sp|Q8RY16|PEX6_ARATH ----> Peroxisomal ATPase PEX6
Intron 1 GTAAATGTCA ... GTCTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.68 | 19 | 15 | 10 |
| A2 | 57.69 | 11 | 19 | 11 |
| A3 | 41.43 | 9.7 | 8.7 | 5 |
| A4 | 43.3 | 12.7 | 5 | 14.3 |
| A5 | 37.14 | 11 | 7 | 6 |
| A6 | 33.33 | 3 | 3 | 0 |
| A7 | 42.86 | 2 | 0 | 3 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 39.13 | 7 | 4 | 5 |
| A10 | 63.24 | 3 | 5 | 5.3 |
>TRINITY_DN106951_c0_g1_i5 from sample A5 / Example spliced isoformAAAGAATGTCAAAGGAACCTTCAAATCGGGAAAAATGTAAGAAACAAGACGGACCATCTAAAAGCCATGTGAACACTCCGGGATATGGAACTTTTTGCAAATGACACAAATGAAGACGAGGCATAATTATTAAGGACTAATGATGCAGATGCAAGGACTCTTATGTCACTGCCCGTCAGAAATCATAACAGCCTATTCCT
ATTCCCGGATCCTGCCGACCATGGCGAATTGGCAGAGAAAAATATGAAAAAATTCGCACCCATTGGAGCATTCATTCTGATTCATTCAACCATGGCATTTGAATGAGTGGGTTTCTACTCTTTGCAGGGCTAGTTTGATATTTATATCCTACACAACATCTTATATGCTGCAAAAAGAATCACAGAACTATCCACTACTC
AAGTTTCGATCCCCACCTTCATTGTGTGTATAATACTGCTAAATCTGGCTGAGTTGTTACCAATGGGTGGAAGAAAGAAGCCTCTGATATTGGCTAGTACTGCTGAAGTTGTTAATTCCGTCCTGCTTTCTGGAGAACTTGCTGGTGAGCCATGTACCCAAGCAGATTTGGTATCTAATTATTCGAGTTTTTGCTCCATC
CGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGAGGGTTCTGAATTGAATGACAGTTTGGAAGAATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAGCTATTGTGGGGGTGGCATCAACTACATTAAGGGACTTATCTCTGACTTCTGGCTCATGGGTGATTGTGAAAGATGTCCA
TACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTCCAGACAAAAAATCTATTGAATTCCACAAATCACAAGAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGCCTTTTATCGGCTTACTCTTTGCCTGAAGAATATACTTTAGCCGTTGATCCACAAGTGGCATATCTCTCACCTCAACTAG
CCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATAGGACACGGTAAAGAATCTTTTGATTCTCTATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGCTGAAGTGGAAATCATTCCATCCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCCGAATCATAATTTT
GAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTAAGAATATCTTTTGTAAAAATACCTTCTAGTGGAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAGAACGCCAAGAAATGATAGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTC
TATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACTGTAACAAGAAGACAGCAGCAGATTCTTCAGAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAAGCTATTCTCTGTGTTAATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTTA
TGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATAGCTCGACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCCGAAGGTAACGCTTTGTACAATTAGTTTGTGTCTTATAGCTTCTGATGTTTGAATATTTTTATTTCC
TC
>TRINITY_DN106951_c0_g1_i1 from sample A5 / Example unspliced isoform:AAAGAATGTCAAAGGAACCTTCAAATCGGGAAAAATGTAAGAAACAAGACGGACCATCTAAAAGCCATGTGAACACTCCGGGATATGGAACTTTTTGCAAATGACACAAATGAAGACGAGGCATAATTATTAAGGACTAATGATGCAGATGCAAGGACTCTTATGTCACTGCCCGTCAGAAATCATAACAGCCTATTCCT
ATTCCCGGATCCTGCCGACCATGGCGAATTGGCAGAGAAAAATATGAAAAAATTCGCACCCATTGGAGCATTCATTCTGATTCATTCAACCATGGCATTTGAATGAGTGGGTTTCTACTCTTTGCAGGGCAGTTTGATATTTATATCCTACACAACATCTTATATGgtaaatgtcaggcccggattttggaaattgtata
tgacaggcccggactttaggttgctttgtttttcatattgatgtcgctgtcgggtcacgataatttcgtgtagaaaagcccaaaagagtcatcaaacaggatgaataattgagaacttgatttgggtttggattaaactttcacaaatttcaggttactatagccaaacgttatttcgattacagatttgactcatcatc
aataaaaaaatattgatttcgtgtcttttcagCTGCAAAAAGAATCACAGAACTATCCACTACTCAAGTTTCGATCCCCACCTTCATTGTGTGTATAATACTGCTAAATCTGGCTGAGTTGTTACCAATGGGTGGAAGAAAGAAGCCTCTGATATTGGCTAGTACTGCTGAAGTTGTTAATTCCGTCCTGCTTTCTGGAG
AACTTGCTGGTGAGCCATGTACCCAAGCAGATTTGGTATCTAATTATTCGAGTTTTTGCTCCATCCGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGAGGGTTCTGAATTGAATGACAGTTTGGAAGAATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAGCTATTGTGGGGGTG
GCATCAACTACATTAAGGGACTTATCTCTGACTTCTGGCTCATGGGTGATTGTGAAAGATGTCCATACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTCCAGACAAAAAATCTATTGAATTCCACAAATCACAGAAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGCCTTTTATCGGCTTA
CTCTTTGCCTGAAGAATATACTTTAGCCGTTGATTTACAAGTGGCATATCTCTCACCTCAACTAGCCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATAGGACACGGTAAAGAATCTTTTGATTCTCTATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGCTGAAGTGGAAATCA
TTCCATCCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCCGAATCATAATTTTGAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTAAGAATATCTTTTGTAAAAATACCTTCTAGTGGAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAGAACGCCAAGAAATG
ATAGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACTGTAACAAGAAGACAGCAGCAGATTCTTCAGAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAAGCTATTCTCTGTGT
TAATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTTATGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATAGCTCGACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCCG
AAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATCTGTTGCTCTTGGACAAGCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTCA
ACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATGCGGTTGAAATGAGGGATGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCGA
GGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCAACTGGTTCTGACAATGATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATGCATGCCTAGGGACATTCGAGGCTTAA
TTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAACAGAAATGGATATTCAAACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAACA
GCTTTGGGGACACCAAAAGTGCCGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGCTGCCTCTTGTGCACAAAGAGCTCTTTTCGTCTGGGTTGCGTCAACGTTCTGGTGTTCTTCTATATGGGCCTCCTGGCACGGGCAAGACATTGTTGGCAAAAGCAGTGGC
AACTGAATGTTCACTGAATTTCCTCAGTGTGAAGGGACCTGAGCTTATCAACATGTATATAGGAGAGTCAGAAAAGAATGTTCGAGATATATTCCAAAAGGCAAGGGCTGCTCGACCGTGTGTCATTTTCTTTGATGAGCTTGATGCTCTTGCTCCTGCTCGTGGGGCATCTGGTGATTCAGGTGGAGTCATGGACAGAG
TAGTATCTCAGATGCTTGCTGAAATTGATGGTCTAAATGAGACTACCCAGGACTTGTTTATTATAGGGGCTAGTAATCGGCCTGATCTTATTGATCCAGCCCTTTTACGGCCTGGCCGGTTTGACAAATTATTGTACGTTGGTATCAGCTCCGACTCATCTTATAGAGAACGGGTACTGGGAGCATTGACCCGGAAGTTC
AAACTTCATGGAAATGTATCATTGTCATCAATAGCCAAAAGATGCCCCCCGAATTTTACTGGTGCTGACATGTATGCTTTATGTGCGGATGCCTGGCTTCAAGCTGTGAAGCGAAAGTTATCAGGTAAAAGGGCAGACACCTCAGGGGACAATGAAGATCACGATTCAGTTATTGTTGGGCATGAAGATTTCATGAAGGC
ACTTGGAGAATTATCCCCATCGCTTTCTCAGGCAGAACTTAGTAGGTATGAAAGGTTACGACAGCAGTTTGAAGGCAAGTCAAAATAAAAACTATATCTTGCAAATGCATGGGAGAATCGTTTTCTTTCCTTCTCAGGGAGAGATTAACAAGATATGAGAGGTCATGGATCCATTTATACTTTTGAATAAAATACAAGAT
GATTTGCTCAACAAGATCATAAGTCAGAAGATTGAACAATGAACTTATTCACTATCTATCCAAAGACTTGCCACCATTTCTGCCGAGCTGGAGATTAGCAGGGGATTTGATTTGAGGGGCAGTTTGTAGGAAACAGAGTCATAGGAGAAGTATTGCTGTTTCTGCCTCAGGCAGAGTAGATTAACTCAGTGCATTTTTCT
AATAAAACCACTGTGTCCATTGCTGAAACATAAACGATGTTTGACAGAATGAAAGTGGCATACCATCTGCCCTAAGATGCGTCACATGTAAACTTTAGTGGCAAATGATTTCTCTATTGTGACCATTTGAAGGAAATTCAACATCGGTCATCAGAGAATGATATATTAATCCACACTAAAGCTTAAAGCTTTTCCTGTAA
CGTACAAAGTTACATTTTTAATGACTAGATGTGAAAGCAACACGTCACCGAATTTTATTGTAAGC
Intron 2 GTAGGAAGAC ... ATTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.24 | 38 | 12 | 18.1 |
| A2 | 11.83 | 25 | 4 | 2.7 |
| A3 | 18.53 | 26 | 11 | 0.9 |
| A4 | 26.19 | 35 | 12 | 12.9 |
| A5 | 39.1 | 6 | 5 | 2.7 |
| A6 | 18.52 | 11 | 3 | 2 |
| A7 | 27.39 | 22 | 9 | 7.7 |
| A8 | 20.59 | 34 | 12 | 5.9 |
| A9 | 12.47 | 39 | 6 | 5.4 |
| A10 | 20.03 | 31 | 10 | 6 |
>TRINITY_DN131340_c0_g1_i5 from sample A1 / Example spliced isoformCAGCCGTTCCATGAAAGAATGTCAAAGGAACCTTCAAATCGGGAAAAATGTAAGAAACAAGACGGACCATCTAAAAGCCATGTGAACAGTCCGGGATATGGAACTTTTTGCAAATGAAACAAATGGAGACGAGGCATAATTATTAAGGACTACTGATGCAGATGCAAGGACTCTTATGTCACCGCCAGTCAGAAATCATA
ACAGCCTATTCCTATTCCCGGATCCTGCCGACCATGGCGAATTGGCAGAGAAAAATATGAAAAAATTCGCACCCATTGGAGCATTCATTCTGATTCATTCAACCATGGCATTTGAATGACTGCAAAAAGAATCACAGAACTATCCACTACTCAAGTTTCGATCCCCACCTTCATTGTGTGTATAATACTGCTAAATCTGG
CTGAGTTGTTACCAATGGGTGGAAGAAAGAAGCCTCTGATATTGGCTAGTACTGCTGAAGTTGTTAATTCCGTCCTGCTTTCTGGAGAACTTGCTGGTGAGCCATGTACCCAAGCAAATTTGGTATCTAATTATTCGAGTTTTTGCTCCATCCGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGAGGGT
TCTGAATTGAATGACAGTTTGGAAGAATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAGCTATTGTGGGGGTGGCATCAACTACATTAAGGGACTTATCTCTGACTTCTGGGTCATGGGTGATTGTGAAAGATGTCCATACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTCCAGA
CAAAAAATCTATTGAATTCCACAAATCACAGAAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGCCTTCTATCGGCTTACTCTTTGCCTGAAGAATATACTTTAGCCGTTGATTTACAAGTGGCATATCTCTCACCTCAACTAGCCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATAGGAC
ACGGTAAAGAATCTTTTGATTCTCTATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGCTGAAGTGGAAATCATTCCATCCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCCGAATCATAATTTTGAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTAAGAATA
TCTTTTGTAAAAATACCTTCTAGTGGAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAGAACGCCAAGAAATGATAGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACTGTAA
CAAGAAGACAGCAGCAGATTCTTCAGAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAAGCTATTCTCTGTGTTAATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTTATGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATAGCTC
GACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCCGAAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATCTGTT
GCTCTTGGACAAGCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTCAACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATGCGGT
TGAAATGAGGGATGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCGAGGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCAACTG
GTTCTGACAATGATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATTCATGCCTAGGGACATTCGAGGCTTAATTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAACAGA
AATGGATATTCAAACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAACAGCTTTGGGGACACCAAAAGTGCCGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGCTGCCTCTTGTGCACAAAGAGCT
CTTTTCGTCTGGGTTGCGTCAACGTTCTGGTGTTCTTCTATATGGGCCTCCTGGCACGGGCAAGACATTGTTGGCAAAAGCAGTGGCAACTGAATGTTCACTGAATTTCCTCAGTGTGAAGGGACCTGAGCTTATCAACATGTATATAGGAGAGTCAGAAAAGAATGTTCGAGATATATTCCAAAAGGCAAGGGCTGCTC
GACCGTGTGTCATTTTCTTTGATGAGCTTGATGCTCTTGCTCCTGCTCGTGGGGCATCTGGTGATTCAGGTGGAGTCATGGACAGAGTAGTATCTCAGATGCTTGCTGAAATTGATGGTCTAAATGAGACTACCCAGGACTTGTTTATTATAGGGGCTAGTAATCGGCCCGATCTTATTGATCCAGCCCTTTTACGGCCT
GGCCGGTTTGACAAATTATTGTACGTTGGTATCAGCTCCGACTCATCTTATAGAGAACGGGTACTGGGAGCATTGACCCGGAAGTTCAAACTTCATGGAAATGTATCATTGTCATCAATAGCCAAAAGATGCCCCCCGAATTTTACTGGTGCTGACATGTATGCTTTATGTGCGGATGCCTGGCTTCAAGCTGTGAAGCG
AAAGTTATCAGGTAAAAGGGCAGACACCTCAGGGGACAATGAAGATCACGATTCAGTTATTGTTGGGCATGAAGATTTCATGAAGGCACTTGGAGAATTATCCCCATCGCTTTCTCAGGCAGAACTTAGTAGGTATGAAAGGTTACGACAGCAGTTTGAAGGCAAGTCAAAATAAAAACTATATCTTGCAAATGCATGGG
AGAATCGTTTTCTTTCCTTCTCAGGGAGAGATTAACAAGATATGAGAGGTCATGGATCCATTTATACTTTTGAATAAAATACAAGATGATTTGCTCAACAAGATCATAAGTCAGAAGATTGAACAATGAACTTATTCACTATCTATCCAAAGACTTGCCACCATTTCTGCCGAGCTGGAGATTAGCAGGGGATTTGATTT
GAGGGGCAGTTTGTAGGAAACAGAGTCATAGGAGAAGTATTGCTGTTTCTGCCTCAGGCAGAGTAGATTAACTCAGTGCATTTTTCTAATAAAACCACTGTGTCCATTGCTGAAACATAAACGATGTTTGACAGAATGAAAGTGGCATACCATCTGCCCTAAGATGCGTCACATGTAAACTTTAGTGGCAAATGATTTCT
CTATTGTGACCATTTGAAGGAAATTCAACATCGGTCATCAGAGAATGATATATTAATCCACACTAAAGCTTAAAGCTTTTCCTGTAACGTACAAAGTTACATTTTTAATGACTAGATGTGAAAGCAACACGTCACCGAATTTTATTGTAAGCATATTGCCATGTTCAAGTTATACCCTCCTGTATCATCATAGACTTGTT
TAACGATCCATAACAGCTGAATTTGTTGCATTGCATTATTTAAGCGCATTATGACCAAGTTATTTGATACTTTATTGTCAAAGTTTATCTATATTCAGGATCGCCC
>TRINITY_DN131340_c0_g1_i6 from sample A1 / Example unspliced isoform:CAGCCGTTCCATGAAAGAATGTCAAAGGAACCTTCAAATCGGGAAAAATGTAAGAAACAAGACGGACCATCTAAAAGCCATGTGAACAGTCCGGGATATGGAACTTTTTGCAAATGAAACAAATGGAGACGAGGCATAATTATTAAGGACTACTGATGCAGATGCAAGGACTCTTATGTCACCGCCAGTCAGAAATCATA
ACAGCCTATTCCTATTCCCGGATCCTGCCGACCATGGCGAATTGGCAGAGAAAAATATGAAAAAATTCGCACCCATTGGAGCATTCATTCTGATTCATTCAACCATGGCATTTGAATGAGTGGGTTTCTACTCTTTGCAGGGCTGGTTTGATATTTATATCCTACACAACAGCTTATATGCTGCAACAACAATCACAGAA
CTATCCACTACTCAAGTTTCGATCCCCACCTTCATTGTGTGTATAATACTGCTAAATCTGGCTGAGTTGTTACCAATGGGTGGAAGAAAGAAGCCTCTGATATTGGCTAGTACTGCTGAAGTTGTTAATTCCGTCCTGCTTTCTGGAGAACTTGCTGGTGAGCCATGTACCCAAGCAAATTTGGTATCTAATTATTCGAG
TTTTTGCTCCATCCGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGAGGGTTCTGAATTGAATGACAGTTTGGAAGAATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAGCTATTGTGGGGGTGGCATCAACTACATTAAGGGACTTATCTCTGACTTCTGGGTCATGGGTGATTG
TGAAAGATGTCCATACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTCCAGACAAAAAATCTATTGAATTCCACAAATCACAAGAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGCCTTCTATCGGCTTACTCTTTGCCTGAAGAATATACTTTAGCCGTTGATTTACAAGTGGCATATCTC
TCACCTCAACTAGCCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATAGGACACGGTAAAGAATCTTTTGATTCTCTATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGCTGAAGTGGAAATCATTCCATCCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCC
GAATCATAATTTTGAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTAAGAATATCTTTTGTAAAAATACCTTCTAGTGGAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAGAACGCCAAGAAATGATAGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGG
GTGACATTTTTTCTATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACTGTAACAAGAAGACAGCAGCAGATTCTTCAGAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAAGCTATTCTCTGTGTTAATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTG
CCTCCTGCTTTTATGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATAGCTCGACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCCGAAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCT
TCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATCTGTTGCTCTTGGACAAGCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTCAACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTT
CTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATGCGGTTGAAATGAGGGATGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCGAGGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGG
GCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCAACTGGTTCTGACAATGATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATTCATGCCTAGGGACATTCGAGGCTTAATTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAA
AAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAACAGAAATGGATATTCAAACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAACAGCTTTGGGGACACCAAAAgtaggaagacaaactcaactaagctggaaatgtc
tctgtttacattctctaatattcagtgagagtaaaatcatgggaaagtgcagtcttgaaaatttattagtaaaaaaacgggtgccatgtattgaaatttggtttgttggtttgtctggaggattggattcatgtaaattttagttactgcgaatacttaaaattcaaagattctctgtttctgttacaaaaagcgtggat
tagatcgtcataatcatgtaatgattgagagccatattcataattttcacagGTGCCGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGGTACATCTGATTTATCTCTCCATTTTTACAGCCACTCTTGATATGAGCACTAAGAAAAGCCATGCTGGAATCAACT
CTGACG
Intron 3 GTAGGAAGAC ... ATTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 38 | 12 | 26 |
| A2 | 10.71 | 25 | 4 | 2 |
| A3 | 21.21 | 26 | 11 | 3 |
| A4 | 27.84 | 35 | 12 | 15 |
| A5 | 36.84 | 6 | 5 | 2 |
| A6 | 18.52 | 11 | 3 | 2 |
| A7 | 32.31 | 22 | 9 | 12 |
| A8 | 26.88 | 34 | 12 | 13 |
| A9 | 20.41 | 39 | 6 | 14 |
| A10 | 29.55 | 31 | 10 | 16 |
>TRINITY_DN40630_c0_g3_i1 from sample A6 / Example spliced isoformGCTCGACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCTGAAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATC
TGTTGCTCTTGGACAAGCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTCAACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATG
CGGTTGAAATGAGGGATGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCGAGGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCA
ACTGGTTCTGACAATGATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATGCATGCCTAGGGACATTCGAGGCTTAATTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAA
CAGAAATGGATATTCAAACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAACAGCTTTGGGGACACCAAAAGTGCCGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGCTGCCTCTTGTGCACAAAG
AGCTCTTTTCGTCTGGGTTGCGTCAACGTTCTGGTGTTCTTCTATATGGGCCTCCTGGCACGGGCAAGACATTGTTGGCAAAAGCAGTGGCAACTGAATGTTCACTGAATTTCCTCAGTGTGAAGGGACCTGAGCTTATCAACATGTATATAGGAGAGTCAGAAAAGAATGTTCGAGATATATTCCAAAAGGCAAGGGCT
GCTCGACCGTGTGTCATTTTCTTTGATGAGCTTGATGCTCTTGCTCCTGCTCGTGGGGCATCTGGTGATTCAGGTGGAGTCATGGACAGAGTAGTATCTCAGATGCTTGCTGAAATTGATGGTCTAAATGAGACTACCCAGGACTTGTTTATTATAGGGGCTAGTAATCGGCCTGATCTTATTGATCCAGCCCTTTTACG
GCCTGGCCGGTTTGACAAATTATTGTACGTTGGTATCAGCTCCGACTCATCTTATAGAGAACGGGTACTGGGAGCATTGACCCGGAAGTTCAAACTTCATGGAAATGTATCATTGTCATCAATAGCCAAAAGATGCCCCCCGAATTTTACTGGTGCTGACATGTATGCTTTATGTGCGGATGCCTGGCTTCAAGCTGTGA
AGCGAAAGTTATCAGGTAAAAGGGCAGACACCTCAGGGGACAATGAAGATCACGATTCAGTTATTGTTGGGCATGAAGATTTCATGAAGGCACTTGGAGAATTATCCCCATCGCTTTCTCAGGCAGAACTTAGTAGGTATGAAAGGTTACGACAGCAGTTTGAAGGCAAGTCAAAATAAAAACTATATCTTGCAAATGCA
TGGGAGAATCGTTTTCTTTCCTTCTCAGGGAGAGATTAACAAGATATGAGAGGTCATGGATCCATTTATACTTTTGAATAAAATACAAGATGACTTGCTCAACAAGATCATAAGTCAGAAGATTGAACAATGAACTTATTCACTATCTATCCAAAGACTTGCCACCATTTCTGCCGAGCTGGAGATTAGCAGGGGATTTG
ATTTGAGGGGCAGTTTGTAGGAAACAGAGTCATAGGAGAAGTATTGCTGTTTCTGCCTCAGGCAGAGTAGATTAACTCAGTGCATTTTTCTAATAAAACCACTGTGTCCATTGCTGAAACATAAACGATGTTTGACAGAATGAAAGTGGCATACCATCTGCCCTAAGATGCGTCACATGTAAACTTTAGTGGCAAATGAT
TTCTCTATTGTGACCATTTGAAGGAAATTCAACATGGGTCATCAGAGAATGATATATTAATCCACACTAAAGCTTAAAGCTTTTCCTGTAACGTACAAAGTTACATTTTTAATGACTAGATGTGAAAGCAACACGTCACCGAATTTTATTGTAAGCATATTGCCATGTTCAAGTTATACCCTCCTGTATCATCATAGACT
TGTTTAACGATCCATAACAGCTGAATTTGTTGCATTGCATTATTTAAGCGCATTATGACCAAGTTATTTGATACTTTATTGTCAAAG
>TRINITY_DN40630_c0_g3_i2 from sample A6 / Example unspliced isoform:GCTCGACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCTGAAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATC
TGTTGCTCTTGGACAAGCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTCAACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATG
CGGTTGAAATGAGGGATGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCGAGGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCA
ACTGGTTCTGACAATGATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATGCATGCCTAGGGACATTCGAGGCTTAATTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAA
CAGAAATGGATATTCAAACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAACAGCTTTGGGGACACCAAAAgtaggaagacaaactcaactaagctggaaatgtctctgtttacattctctaatattcagtgagagtaaaatcatgggaaagtgcagtcttg
aaaatttattagtaaaaaaacgggtgccatgtattgaaatttggtttgttggtttgtctggaggattggattcatgtaaattttagttactgcgaataacttaaaattcaaagattctctgtttctgttacaaaaagtgtggattagatcgtcataaccatgtaatgattgagagccatattcataattttcacagGTGC
CGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGCTGCCTCTTGTGCACAAAGAGCTCTTTTCGTCTGGGTTGCGTCAACGTTCTGGTGTTCTTCTATATGGGCCTCCTGGCACGGGCAAGACATTGTTGGCAAAAGCAGTGGCAACTGAATGTTCACTGAATTTC
CTCAGTGTGAAGGGACCTGAGCTTATCAACATGTATATAGGAGAGTCAGAAAAGAATGTTCGAGATATATTCCAAAAGGCAAGGGCTGCTCGACCGTGTGTCATTTTCTTTGATGAGCTTGATGCTCTTGCTCCTGCTCGTGGGGCATCTGGTGATTCAGGTGGAGTCATGGACAGAGTAGTATCTCAGATGCTTGCTGA
AATTGATGGTCTAAATGAGACTACCCAGGACTTGTTTATTATAGGGGCTAGTAATCGGCCTGATCTTATTGATCCAGCCCTTTTACGGCCTGGCCGGTTTGACAAATTATTGTACGTTGGTATCAGCTCCGACTCATCTTATAGAGAACGGGTACTGGGAGCATTGACCCGGAAGTTCAAACTTCATGGAAATGTATCAT
TGTCATCAATAGCCAAAAGATGCCCCCCGAATTTTACTGGTGCTGACATGTATGCTTTATGTGCGGATGCCTGGCTTCAAGCTGTGAAGCGAAAGTTATCAGGTAAAAGGGCAGACACCTCAGGGGACAATGAAGATCACGATTCAGTTATTGTTGGGCATGAAGATTTCATGAAGGCACTTGGAGAATTATCCCCATCG
CTTTCTCAGGCAGAACTTAGTAGGTATGAAAGGTTACGACAGCAGTTTGAAGGCAAGTCAAAATAAAAACTATATCTTGCAAATGCATGGGAGAATCGTTTTCTTTCCTTCTCAGGGAGAGATTAACAAGATATGAGAGGTCATGGATCCATTTATACTTTTGAATAAAATACAAGATGACTTGCTCAACAAGATCATAA
GTCAGAAGATTGAACAATGAACTTATTCACTATCTATCCAAAGACTTGCCACCATTTCTGCCGAGCTGGAGATTAGCAGGGGATTTGATTTGAGGGGCAGTTTGTAGGAAACAGAGTCATAGGAGAAGTATTGCTGTTTCTGCCTCAGGCAGAGTAGATTAACTCAGTGCATTTTTCTAATAAAACCACTGTGTCCATTG
CTGAAACATAAACGATGTTTGACAGAATGAAAGTGGCATACCATCTGCCCTAAGATGCGTCACATGTAAACTTTAGTGGCAAATGATTTCTCTATTGTGACCATTTGAAGGAAATTCAACATGGGTCATCAGAGAATGATATATTAATCCACACTAAAGCTTAAAGCTTTTCCTGTAACGTACAAAGTTACATTTTTAAT
GACTAGATGTGAAAGCAACACGTCACCGAATTTTATTGTAAGCATATTGCCATGTTCAAGTTATACCCTCCTGTATCATCATAGACTTGTTTAACGATCCATAACAGCTGAATTTGTTGCATTGCATTATTTAAGCGCATTATGACCAAGTTATTTGATACTTTATTGTCAAAG
Intron 4 GTGGGTTTCT ... GTCTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.37 | 20 | 26 | 10 |
| A2 | 57.65 | 18 | 38 | 11 |
| A3 | 59.79 | 8 | 18 | 5.8 |
| A4 | 39.8 | 28.6 | 23 | 14.8 |
| A5 | 51.22 | 10 | 15 | 6 |
| A6 | 100 | 0 | 3 | 0 |
| A7 | 58.33 | 5 | 11 | 3 |
| A8 | 50 | 1 | 2 | 0 |
| A9 | 39.53 | 13 | 12 | 5 |
| A10 | 51.67 | 10.2 | 16 | 5.8 |
>TRINITY_DN113106_c0_g1_i3 from sample A3 / Example spliced isoformGAAAGAATGTCAAAGGAACCTTCAAATCGGGAAAAATGTAAGAAACAAGACGGACCATCTAAAAGCCATGTGAACAGTCCGGGATATGGAACTTTTTGCAAATGACACAAATGAAGACGAGGCATAATTATTAAGGACTAATGATGCAGATGCAAGGACTCTTATGTCACTGCCCGTCAGAAATCATAACAGCCTATTCC
TATTCCCGGATCCTGCCGACCATGGCGAATTGGCAGAGAAAAATATGAAAAAATTCGCACCCATTGGAGCATTCATTCTGATTCATTCAACCATGGCATTTGAATGACTGCAACAACAATCACAGAACTATCCACTACTCAAGTTTCGATCCCGACCTTCATTGTGTGTATAATACTGCTAAATCTGGCTGAGTTGTTAC
CAATGGGTGGAAGAAAGAAGCCTCTGATATTGGCAAGTACTGCTGAAGTTGTTAATTCCGTCCTGCTTTCTGGAGAACTTGCTGGTGAGCCATGTACCCAAGCAGATTTGGTATCTAATTATTCGAGTTTTTGCTCCATCCGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGAGGGTTCTGAATTGAAT
GACAGTTTGGAAGAATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAGCTATTGTGGGGGTGGCATCAACTACATTAAGGGACTTATCTCTGACTTCTGGCTCATGGGTGATTGTGAAAGATGTCCATACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTCCAGACAAAAAATCTAT
TGAATTCCACAAATCACAGAAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGCCTTTTATCGGCTTACTCTTTGCCTGAAGAATATACTTTAGCCGTTGATTTACAAGTGGCATATCTCTCACCTCAACTAGCCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATAGGACATGGTAAAGAAT
CTTTTGATTCTCTATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGCTGAAGTGGAAATCATTCCATCCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCCGAATCATAATTTTGAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTGAGAATATCTTTTGTAAAA
ATACCTTCTAGTGGAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAGAACGCCAAGAAATGATAGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACTGTAACAAGAAGACAGC
AGCAGATTCTTCAGAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAAGCTATTCTCTGTGTTAATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTTATGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATAGCTCGACATTTGGCAT
CTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCTGAAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATCTGTTGCTCTTGGACAA
GCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTCAACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATGCGGTTGAAATGAGGGA
TGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCGAGGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCAACTGGTTCTGACAATG
ATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATTCATGCCTAGGGACATTCGAGGCTTAATTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAACAGAAATGGATATTCA
AACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAACAGCTTTGGGGACACCAAAAGTAGGAAGACAAACTCAACTAAGCTGGAAATGTCTCTGTTTACATTCTCTAATATTCAGTGAGAGTAAAATCATGGGAAAGTGCAGTCTCGAAAATTTATTAGTAAA
AAAACGGGTG
>TRINITY_DN113106_c0_g1_i4 from sample A3 / Example unspliced isoform:GAAAGAATGTCAAAGGAACCTTCAAATCGGGAAAAATGTAAGAAACAAGACGGACCATCTAAAAGCCATGTGAACAGTCCGGGATATGGAACTTTTTGCAAATGAAACAAATGGAGACGAGGCATAATTATTAAGGACTAATGATGCAGATGCAAGGACTCTTATGTCACCGCCAGTCAGAAATCATAACAGCCTATTCC
TATTCCCGGATCCTGCCGACCATGGCGAATTGGCAGAGAAAAATATGAAAAAATTCGCACCCATTGGAGCATTCATTCTGATTCATTCAACCATGGCATTTGAATGAgtgggtttctactctttgcagggctggtttgatatttatatcctacacaacatcttatatggtaaatgtcaggcccggattttggaaattgta
tatggcccggactttaggttgctttgtttttcatattgatgtcgctgtcgggtcacgataatttcgtgtagaaaagcccaaaagagtcatcaaacaggatgaataattgagaacttgatttgggtttggattaaactttcacaaatttcaggttactatagccaaacgttatttcgattacagatttgactcatcatcaa
taaaaaaatattgatttcgtgtcttttcagCTGCAACAACAATCACAGAACTATCCACTACTCAAGTTTCGATCCCGACCTTCATTGTGTGTATAATACTGCTAAATCTGGCTGAGTTGTTACCAATGGGTGGAAGAAAGAAGCCTCTGATATTGGCAAGTACTGCTGAAGTTGTTAATTCCGTCCTGCTTTCTGGAGAA
CTTGCTGGTGAGCCATGTACCCAAGCAGATTTGGTATCTAATTATTCGAGTTTTTGCTCCATCCGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGAGGGTTCTGAATTGAATGACAGTTTGGAAGAATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAGCTATTGTGGGGGTGGC
ATCAACTACATTAAGGGACTTATCTCTGACTTCTGGCTCATGGGTGATTGTGAAAGATGTCCATACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTCCAGACAAAAAATCTATTGAATTCCACAAATCACAGAAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGCCTTTTATCGGCTTACT
CTTTGCCTGAAGAATATACTTTAGCCGTTGATTTACAAGTGGCATATCTCTCACCTCAACTAGCCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATAGGACATGGTAAAGAATCTTTTGATTCTCTATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGCTGAAGTGGAAATCATT
CCATCCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCCGAATCATAATTTTGAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTGAGAATATCTTTTGTAAAAATACCTTCTAGTGGAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAGAACGCCAAGAAATGAT
AGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACTGTAACAAGAAGACAGCAGCAGATTCTTCAGAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAAGCTATTCTCTGTGTTA
ATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTTATGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATAGCTCGACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCTGAA
GGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATCTGTTGCTCTTGGACAAGCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTCAAC
GAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATGCGGTTGAAATGAGGGATGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCGAGG
ATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCAACTGGTTCTGACAATGATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATTCATGCCTAGGGACATTCGAGGCTTAATT
GCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAACAGAAATGGATATTCAAACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAACAGC
TTTGGGGACACCAAAAGTGCCGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGCTGCCTCTTGTGCACAAAGAGCTCTTTTCGTCTGGGTTGCGTCAACGTTCTGGTGTTCTTCTATATGGGCCTCCTGGCACGGGCAAGACATTGTTGGCAAAAGCAGTGGCAA
CTGAGTGTTCACTGAATTTCCTCAGTGTGAAGGGACCTGAGCTTATCAACATGTATATAGGAGAGTCAGAAAAGAATGTTCGAGATATATTCCAAAAGGCAAGGGCTGCTCGACCGTGTGTCATTTTCTTTGATGAGCTTGATGCTCTTGCTCCTGCTCGTGGGGCATCTGGTGATTCAGGTGGAGTCATGGACAGAGTA
GTATCTCAGATGCTTGCTGAAATTGATGGTCTAAATGAGACTACCCAGGACTTGTTTATTATAGGGGCTAGTAATCGGCCCGATCTTATTGATCCAGCCCTTTTACGGCCTGGCCGGTTTGACAAATTATTGTACGTTGGTATCAGCTCCGACTCATCTTATAGAGAACGGGTACTGGGAGCATTGACCCGGAAGTTCAA
ACTTCATGGAAATGTATCATTGTCATCAATAGCCAAAAGATGCCCCCCGAATTTTACTGGTGCTGACATGTATGCTTTATGTGCGGATGCCTGGCTTCAAGCTGTGAAGCGAAAGTTATCAGGTAAAAGGGCAGACACCTCAGGGGACAATGAAGATCACGATTCAGTTATTGTTGGGCATGAAGATTTCATGAAGGCAC
TTGGAGAATTATCCCCATCGCTTTCTCAGGCAGAACTTAGTAGGTATGAAAGGTTACGACAGCAGTTTGAAGGCAAGTCAAAATAAAAACTATATCTTGCAAATGCATGGGAGAATCGTTTTCTTTCCTTCTCAGGGAGAGATTAACAGATATGAGAGGTCATCGATCCATTTATACTTTTGAATAAAATACAAGATGAT
TTGCTCAACAAGATCATAAGTCAGAAGATTGAACAATGAACTTATTCACTATCTATCCAAAGACTTGCCACCATTTCTGCCGAGCTGGAGATTAGCAGGGGATTTGATTTGAGGGGCAGTTTGTAGGAAACAGAGTCATAGGAGAAGTATTGCTGTTTCTGCCTCAGGCAGAGTAGATTAACTCAGTGCATTTTTCTAAT
AAAACCACTGTGTCCATTGCTGAAACATAAACGATGTTTGACAGAATGAAAGTGGCATACCATCTGCCCTAAGATGCGTCACATGTAAACTTTAGTGGCAAATGATTTCTCTATTGTGACCATTTGAAGGAAATTCAACATCGGTCATCAGAGAATGATATATTAATCCACACTAAAGCTTAAAGCTTTTCCTGTAACGT
ACAAAGTTACATTTTTAATGACTAGATGTGAAAGCAACACGTCACCGAATTTTATTGTAAGCATATTGCCATGTTCAAGTTATACCCTCCTGTATCATCATAGACTTGTTTAACG
Intron 5 GTGGGTTTCT ... GTCTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.37 | 20 | 26 | 10 |
| A2 | 57.65 | 18 | 38 | 11 |
| A3 | 58.97 | 8 | 18 | 5 |
| A4 | 40.66 | 27 | 23 | 14 |
| A5 | 51.22 | 10 | 15 | 6 |
| A6 | 100 | 0 | 3 | 0 |
| A7 | 58.33 | 5 | 11 | 3 |
| A8 | 50 | 1 | 2 | 0 |
| A9 | 39.53 | 13 | 12 | 5 |
| A10 | 48.84 | 11 | 16 | 5 |
>TRINITY_DN131340_c0_g1_i5 from sample A1 / Example spliced isoformCAGCCGTTCCATGAAAGAATGTCAAAGGAACCTTCAAATCGGGAAAAATGTAAGAAACAAGACGGACCATCTAAAAGCCATGTGAACAGTCCGGGATATGGAACTTTTTGCAAATGAAACAAATGGAGACGAGGCATAATTATTAAGGACTACTGATGCAGATGCAAGGACTCTTATGTCACCGCCAGTCAGAAATCATA
ACAGCCTATTCCTATTCCCGGATCCTGCCGACCATGGCGAATTGGCAGAGAAAAATATGAAAAAATTCGCACCCATTGGAGCATTCATTCTGATTCATTCAACCATGGCATTTGAATGACTGCAAAAAGAATCACAGAACTATCCACTACTCAAGTTTCGATCCCCACCTTCATTGTGTGTATAATACTGCTAAATCTGG
CTGAGTTGTTACCAATGGGTGGAAGAAAGAAGCCTCTGATATTGGCTAGTACTGCTGAAGTTGTTAATTCCGTCCTGCTTTCTGGAGAACTTGCTGGTGAGCCATGTACCCAAGCAAATTTGGTATCTAATTATTCGAGTTTTTGCTCCATCCGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGAGGGT
TCTGAATTGAATGACAGTTTGGAAGAATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAGCTATTGTGGGGGTGGCATCAACTACATTAAGGGACTTATCTCTGACTTCTGGGTCATGGGTGATTGTGAAAGATGTCCATACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTCCAGA
CAAAAAATCTATTGAATTCCACAAATCACAGAAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGCCTTCTATCGGCTTACTCTTTGCCTGAAGAATATACTTTAGCCGTTGATTTACAAGTGGCATATCTCTCACCTCAACTAGCCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATAGGAC
ACGGTAAAGAATCTTTTGATTCTCTATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGCTGAAGTGGAAATCATTCCATCCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCCGAATCATAATTTTGAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTAAGAATA
TCTTTTGTAAAAATACCTTCTAGTGGAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAGAACGCCAAGAAATGATAGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACTGTAA
CAAGAAGACAGCAGCAGATTCTTCAGAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAAGCTATTCTCTGTGTTAATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTTATGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATAGCTC
GACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCCGAAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATCTGTT
GCTCTTGGACAAGCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTCAACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATGCGGT
TGAAATGAGGGATGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCGAGGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCAACTG
GTTCTGACAATGATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATTCATGCCTAGGGACATTCGAGGCTTAATTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAACAGA
AATGGATATTCAAACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAACAGCTTTGGGGACACCAAAAGTGCCGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGCTGCCTCTTGTGCACAAAGAGCT
CTTTTCGTCTGGGTTGCGTCAACGTTCTGGTGTTCTTCTATATGGGCCTCCTGGCACGGGCAAGACATTGTTGGCAAAAGCAGTGGCAACTGAATGTTCACTGAATTTCCTCAGTGTGAAGGGACCTGAGCTTATCAACATGTATATAGGAGAGTCAGAAAAGAATGTTCGAGATATATTCCAAAAGGCAAGGGCTGCTC
GACCGTGTGTCATTTTCTTTGATGAGCTTGATGCTCTTGCTCCTGCTCGTGGGGCATCTGGTGATTCAGGTGGAGTCATGGACAGAGTAGTATCTCAGATGCTTGCTGAAATTGATGGTCTAAATGAGACTACCCAGGACTTGTTTATTATAGGGGCTAGTAATCGGCCCGATCTTATTGATCCAGCCCTTTTACGGCCT
GGCCGGTTTGACAAATTATTGTACGTTGGTATCAGCTCCGACTCATCTTATAGAGAACGGGTACTGGGAGCATTGACCCGGAAGTTCAAACTTCATGGAAATGTATCATTGTCATCAATAGCCAAAAGATGCCCCCCGAATTTTACTGGTGCTGACATGTATGCTTTATGTGCGGATGCCTGGCTTCAAGCTGTGAAGCG
AAAGTTATCAGGTAAAAGGGCAGACACCTCAGGGGACAATGAAGATCACGATTCAGTTATTGTTGGGCATGAAGATTTCATGAAGGCACTTGGAGAATTATCCCCATCGCTTTCTCAGGCAGAACTTAGTAGGTATGAAAGGTTACGACAGCAGTTTGAAGGCAAGTCAAAATAAAAACTATATCTTGCAAATGCATGGG
AGAATCGTTTTCTTTCCTTCTCAGGGAGAGATTAACAAGATATGAGAGGTCATGGATCCATTTATACTTTTGAATAAAATACAAGATGATTTGCTCAACAAGATCATAAGTCAGAAGATTGAACAATGAACTTATTCACTATCTATCCAAAGACTTGCCACCATTTCTGCCGAGCTGGAGATTAGCAGGGGATTTGATTT
GAGGGGCAGTTTGTAGGAAACAGAGTCATAGGAGAAGTATTGCTGTTTCTGCCTCAGGCAGAGTAGATTAACTCAGTGCATTTTTCTAATAAAACCACTGTGTCCATTGCTGAAACATAAACGATGTTTGACAGAATGAAAGTGGCATACCATCTGCCCTAAGATGCGTCACATGTAAACTTTAGTGGCAAATGATTTCT
CTATTGTGACCATTTGAAGGAAATTCAACATCGGTCATCAGAGAATGATATATTAATCCACACTAAAGCTTAAAGCTTTTCCTGTAACGTACAAAGTTACATTTTTAATGACTAGATGTGAAAGCAACACGTCACCGAATTTTATTGTAAGCATATTGCCATGTTCAAGTTATACCCTCCTGTATCATCATAGACTTGTT
TAACGATCCATAACAGCTGAATTTGTTGCATTGCATTATTTAAGCGCATTATGACCAAGTTATTTGATACTTTATTGTCAAAGTTTATCTATATTCAGGATCGCCC
>TRINITY_DN131340_c0_g1_i4 from sample A1 / Example unspliced isoform:CAGCCGTTCCATGAAAGAATGTCAAAGGAACCTTCAAATCGGGAAAAATGTAAGAAACAAGACGGACCATCTAAAAGCCATGTGAACAGTCCGGGATATGGAACTTTTTGCAAATGAAACAAATGGAGACGAGGCATAATTATTAAGGACTACTGATGCAGATGCAAGGACTCTTATGTCACCGCCAGTCAGAAATCATA
ACAGCCTATTCCTATTCCCGGATCCTGCCGACCATGGCGAATTGGCAGAGAAAAATATGAAAAAATTCGCACCCATTGGAGCATTCATTCTGATTCATTCAACCATGGCATTTGAATGAgtgggtttctactctttgcagggctggtttgatatttatatcctacacaacagcttatatggtaaatgtcaggcccggatt
ttggaaattgtatatgacaggcccggactttaggttgctttgtttttcatattgatgtcgctgtcgggtcacgataatttcgtgtagaaaagcccaaaagagtcatcaaacaggatgaataattgagaacttgatttgggtttggattaaactttcacaaatttcaggttactatagccaaacgttatttcgattacaga
tttgactcatcatcaataaaaaaatattgatttcgtgtcttttcagCTGCAAAAAGAATCACAGAACTATCCACTACTCAAGTTTCGATCCCCACCTTCATTGTGTGTATAATACTGCTAAATCTGGCTGAGTTGTTACCAATGGGTGGAAGAAAGAAGCCTCTGATATTGGCTAGTACTGCTGAAGTTGTTAATTCCGT
CCTGCTTTCTGGAGAACTTGCTGGTGAGCCATGTACCCAAGCAAATTTGGTATCTAATTATTCGAGTTTTTGCTCCATCCGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGAGGGTTCTGAATTGAATGACAGTTTGGAAGAATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAG
CTATTGTGGGGGTGGCATCAACTACATTAAGGGACTTATCTCTGACTTCTGGGTCATGGGTGATTGTGAAAGATGTCCATACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTCCAGACAAAAAATCTATTGAATTCCACAAATCACAAGAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGC
CTTCTATCGGCTTACTCTTTGCCTGAAGAATATACTTTAGCCGTTGATTTACAAGTGGCATATCTCTCACCTCAACTAGCCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATAGGACACGGTAAAGAATCTTTTGATTCTCTATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGC
TGAAGTGGAAATCATTCCATCCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCCGAATCATAATTTTGAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTAAGAATATCTTTTGTAAAAATACCTTCTAGTGGAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAG
AACGCCAAGAAATGATAGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACTGTAACAAGAAGACAGCAGCAGATTCTTCAGAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAA
GCTATTCTCTGTGTTAATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTTATGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATAGCTCGACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCT
CCTGCATGGCCCCGAAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATCTGTTGCTCTTGGACAAGCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCT
TGGGAAAGTCTTCAACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATGCGGTTGAAATGAGGGATGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCA
GCTGACAGTACCGAGGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCAACTGGTTCTGACAATGATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATTCATGCCTAGGGA
CATTCGAGGCTTAATTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAACAGAAATGGATATTCAAACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGA
AGAGAACCGCAACAGCTTTGGGGACACCAAAAGTGCCGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGCTGCCTCTTGTGCACAAAGAGCTCTTTTCGTCTGGGTTGCGTCAACGTTCTGGTGTTCTTCTATATGGGCCTCCTGGCACGGGCAAGACATTGTTG
GCAAAAGCAGTGGCAACTGAATGTTCACTGAATTTCCTCAGTGTGAAGGGACCTGAGCTTATCAACATGTATATAGGAGAGTCAGAAAAGAATGTTCGAGATATATTCCAAAAGGCAAGGGCTGCTCGACCGTGTGTCATTTTCTTTGATGAGCTTGATGCTCTTGCTCCTGCTCGTGGGGCATCTGGTGATTCAGGTGG
AGTCATGGACAGAGTAGTATCTCAGATGCTTGCTGAAATTGATGGTCTAAATGAGACTACCCAGGACTTGTTTATTATAGGGGCTAGTAATCGGCCCGATCTTATTGATCCAGCCCTTTTACGGCCTGGCCGGTTTGACAAATTATTGTACGTTGGTATCAGCTCCGACTCATCTTATAGAGAACGGGTACTGGGAGCAT
TGACCCGGAAGTTCAAACTTCATGGAAATGTATCATTGTCATCAATAGCCAAAAGATGCCCCCCGAATTTTACTGGTGCTGACATGTATGCTTTATGTGCGGATGCCTGGCTTCAAGCTGTGAAGCGAAAGTTATCAGGTAAAAGGGCAGACACCTCAGGGGACAATGAAGATCACGATTCAGTTATTGTTGGGCATGAA
GATTTCATGAAGGCACTTGGAGAATTATCCCCATCGCTTTCTCAGGCAGAACTTAGTAGGTATGAAAGGTTACGACAGCAGTTTGAAGGCAAGTCAAAATAAAAACTATATCTTGCAAATGCATGGGAGAATCGTTTTCTTTCCTTCTCAGGGAGAGATTAACAAGATATGAGAGGTCATGGATCCATTTATACTTTTGA
ATAAAATACAAGATGATTTGCTCAACAAGATCATAAGTCAGAAGATTGAACAATGAACTTATTCACTATCTATCCAAAGACTTGCCACCATTTCTGCCGAGCTGGAGATTAGCAGGGGATTTGATTTGAGGGGCAGTTTGTAGGAAACAGAGTCATAGGAGAAGTATTGCTGTTTCTGCCTCAGGCAGAGTAGATTAACT
CAGTGCATTTTTCTAATAAAACCACTGTGTCCATTGCTGAAACATAAACGATGTTTGACAGAATGAAAGTGGCATACCATCTGCCCTAAGATGCGTCACATGTAAACTTTAGTGGCAAATGATTTCTCTATTGTGACCATTTGAAGGAAATTCAACATCGGTCATCAGAGAATGATATATTAATCCACACTAAAGCTTAA
AGCTTTTCCTGTAACGTACAAAGTTACATTTTTAATGACTAGATGTGAAAGCAACACGTCACCGAATTTTATTGTAAGCATATTGCCATGTTCAAGTTATACCCTCCTGTATCATCATAGACTTGTTTAACGATCCATAACAGCTGAATTTGTTGCATTGCATTATTTAAGCGCATTATGACCAAGTTATTTGATACTTT
ATTGTCAAAGTTTATCTATATTCAGGATCGCCC
Intron 6 GTACATTGAC ... TGTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.4 | 72 | 22 | 0 |
| A2 | 13.33 | 39 | 6 | 0 |
| A3 | 15.15 | 28 | 5 | 1 |
| A4 | 33.33 | 24 | 12 | 0 |
| A5 | 22.22 | 7 | 2 | 0 |
| A6 | 9.09 | 40 | 4 | 0 |
| A7 | 18.7 | 100 | 23 | 1 |
| A8 | 21.63 | 72.5 | 20 | 0 |
| A9 | 12.5 | 70 | 10 | 0 |
| A10 | 18.28 | 76 | 17 | 0 |
>TRINITY_DN48269_c0_g1_i6 from sample A7 / Example spliced isoformGAAAGAATGTCAAAGGAACCTTCAAATCGGGAAAAATGTAAGAAACAAGACGGACCATCTAAAAGCCATGTGAACAGTCCGGGATATGGAACTTTTTGCAAATGAAACAAATGGAGACGAGGCATAATTATTAAGGACTACTGATGCAGATGCAAGGACTCTTATGTCACTGCCCGTCAGAAATCATAACAGCCTATTCC
TATTCCCGGATCCTGCCAACCATGGCGAATTGGCAGAGAAAAATATGAAAAAATTCGCACCCATTGGAGCATTCATTCTGATTCATTCAACCATGGCATTTGAATGAGTGGGTTTCTACTCTTTGCAGGGCAGTTTGATATTTATATCCTACACAACAGCTTATATGGTAAATGTCAGGCCCGGATTTTGGAAATTGTAT
ATGACAGGCCCGGACTTTAGGTTGCTTTGTTTTTCATATTGATGTCGCTGTCGGGTCACGATAATTTCGTGTAGAAAAGCCCAAAAGAGTCATCAAACAGGATGAATAATTGAGAACTTGATTTGGGTTTGGATTAAACTTTCACAAATTTCAGGTTACTATAGCCAAACGTTATTTCGATTACAGATTTGACTCATCAT
CAATAAAAAAATATTGATTTCGTGTCTTTTCAGCTGCAAAAAGAATCACAGAACTATCCACTACTCAAGTTTCGATCCCGACCTTCATTGTGTGTATAATACTGCTAAATCTGGCTGAGTTGTTACCAATGGGTGGAAGAAAGAAGCCTCTGATATTGGCAAGTACTGCTGAAGTTGTTAATTCCGTCCTGCTTTCTGGA
GAACTTGCTGGTGAGCCATGTACCCAAGCAAATTTGGTATCTAATTATTCGAGTTTTTGCTCCATCCGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGAGGGTTCTGAATTGAATGACAGTTTGGAAGAATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAGCTATTGTGGGGGT
GGCATCAACTACATTAAGGGACTTATCTCTGACTTCTGGCTCATGGGTGATTGTGAAAGATGTCCATACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTCCAGACAAAAAATCTATTGAATTCCACAAATCACAGAAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGCCTTCTATCGGCTT
ACTCTTTGCCTGAAGAATATACTTTAGCCGTTGATTTACAAGTGGCATATCTCTCACCTCAACTAGCCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATAGGACACGGTAAAGAATCTTTTGATTCTCTATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGCTGAAGTGGAAATC
ATTCCATTCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCCGAATCATAATTTTGAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTAAGAATATCTTTTGTAAAAATACCTTCTAGTGGAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAGAACGCCAAGAAAT
GATAGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACTGTAACAAGAAGACAGCAGCAGATTCTTCAGAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAAGCTATTCTCTGTG
TTAATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTTATGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATAGCTCGACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCC
GAAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATCTGTTGCTCTTGGACAAGCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTC
AACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATGCGGTTGAAATGAGGGATGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCG
AGGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCAACTGGTTCTGACAATGATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATGCATGCCTAGGGACATTCGAGGCTTA
ATTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAACAGAAATGGATATTCAAACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAAC
AGCTTTGGGGACACCAAAAGTGCCGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGCTGCCTCTTGTGCACAAAGAGCTCTTTTCGTCTGGGTTGCGTCAACGTTCTGGTGTTCTTCTATATGGGCCTCCTGGCACGGGCAAGACATTGTTGGCAAAAGCAGTGG
CAACTGAGTGTTCACTGAATTTCCTCAGTGTGAAGGGACCTGAGCTTATCAACATGTATATAGGAGAGTCAGAAAAGAATGTTCGAGATATATTCCAAAAGGCAAGGGCTGCTCGACCGTGTGTCATTTTCTTTGATGAGCTTGATGCTCTTGCTCCTGCTCGTGGGGCATCTGGTGATTCAGGTGGAGTCATGGACAGA
GTAGTATCTCAGATGCTTGCTGAAATTGATGGTCTAAATGAGACTACCCAGGACTTGTTTATTATAGGGGCTAGTAATCGGCCTGATCTTATTGATCCAGCCCTTTTACGGCCTGGCCGGTTTGACAAATTATTGTACGTTGGTATCAGCTCCGACTCATCTTATAGAGAACGGGTACTGGGAGCATTGACCCGGAAGTT
CAAACTTCATGGAAATGTATCATTGTCATCAATAGCCAAAAGATGCCCCCCGAATTTTACTGGTGCTGACATGTATGCTTTATGTGCGGATGCCTGGCTTCAAGCTGTGAAGCGAAAGTTATCAGGTAAAAGGGCAGACACCTCAGGGGACAATGAAGATCACGATTCAGTTATTGTTGGGCATGAAGATTTCATGAAGG
CACTTGGAGAATTATCCCCATCGCTCTCTCAGGCAGAACTTAGTAGGTATGAAAGGTTACGACAGCAGTTTGAAGGCAAGTCAAAATAAAAACTATATCTTGCAAATGCATGGGAGAATCGTTTTCTTTCCTTCTCAGGGAGAGATTAACAAGATATGAGAGGTCATGGATCCATTTATACTTTTGAATAAAATACAAGA
TGATTTGCTCAACAAGATCATAAGTCAGAAGATTGAACAATGAACTTATTCACTATCTATCCAAAGACTTGCCACCATTTCTGCCGAGCTGGAGATTAGCAGGGGATTTGATTTGAGGGGCAGTTTGTAGGAAACAGAGTCATAGGAGAAGTATTGCTGTTTCTGCCTCAGGCAGAGTAGATTAACTCAGTGCATTTTTC
TAATAAAACCACTGTGTCCATTGCTGAAACATAAACGATGTTTGACAGAATGAAAGTGGCATACCATCTGCCCTAAGATGCGTCACATGTAAACTTTAGTGGCAAATGATTTCTCTATTGTGACCATTTGAAGGAAATTCAACATCGGTCATCAGAGAATGATATATTAATCCACACTAAAGCTTAAAGCTTTTCCTGTA
ACGTACAAAGTTACATTTTTAATGACTAGATGTGAAAGCAACACGTCACCGAATTTTATTGTAAGCATATTGCCATGTTCAAGTTATACCCTCCTGTATCATCATAGACTTGTTTAACGATCCATAACAGCTGAATTTGTTGCATTGCATTATTTAAGCGCATTATGACCAAGTTATTTGATACTTTATTGTCAAAGTTT
ATCTATATTCAGGATCGCCCCTTTGGGTTCCAGACTAAAAGCTGACCTAAAAGCAGGCTTTGTAGATTGTTGATAAATTATGCAATTGTCAAAGTGGAAGACAACTTTGTGAATTTCCAATACCCGACCAGGGAGTGTATTGTGAAACACTCAGTTTGGTTGTAC
>TRINITY_DN48269_c0_g1_i7 from sample A7 / Example unspliced isoform:GAAAGAATGTCAAAGGAACCTTCAAATCGGGAAAAATGTAAGAAACAAGACGGACCATCTAAAAGCCATGTGAACAGTCCGGGATATGGAACTTTTTGCAAATGAAACAAATGGAGACGAGGCATAATTATTAAGGACTACTGATGCAGATGCAAGGACTCTTATGTCACCGCCAGTCAGAAATCATAACAGCCTATTCC
TATTCCCGGATCCTGCCAACCATGGCGAATTGGCAGAGAAAAATATGAAAAAATTCGCACCCATTGGAGCATTCATTCTGATTCATTCAACCATGGCATTTGAATGAGTGGGTTTCTACTCTTTGCAGGGCAGTTTGATATTTATATCCTACACAACAGCTTATATGCTGCAACAACAATCACAGAACTATCCACTACTC
AAGTTTCGATCCCGACCTTCATTGTGTGTATAATACTGCTAAATATTGGCAAGTACTGCTGAAGTTGTTAATTCCGTCCTGCTTTCTGGAGAACTTGCTGGTGAGCCATGTACCCAAGCAAATTTGGTATCTAATTATTCGAGTTTTTGCTCCATCCGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGA
GGGTTCTGAATTGAATGACAGTTTGGAAGAATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAGCTATTGTGGGGGTGGCATCAACTACATTAAGGGACTTATCTCTGACTTCTGGCTCATGGGTGATTGTGAAAGATGTCCATACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTC
CAGACAAAAAATCTATTGAATTCCACAAATCACAGAAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGCCTTCTATCGGCTTACTCTTTGCCTGAAGAATATACTTTAGCCGTTGATTTACAAGTGGCATATCTCTCACCTCAACTAGCCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATA
GGACACGGTAAAGAATCTTTTGATTCTCTATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGCTGAAGTGGAAATCATTCCATTCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCCGAATCATAATTTTGAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTAAG
AATATCTTTTGTAAAAATACCTTCTAGTGGAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAGAACGCCAAGAAATGATAGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACT
GTAACAAGAAGACAGCAGCAGATTCTTCAGAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAAGCTATTCTCTGTGTTAATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTTATGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATA
GCTCGACATTTGGCATCTTTGTTGGCACCTTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCCGAAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATC
TGTTGCTCTTGGACAAGCATTCAATACTGCTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTCAACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATG
CGGTTGAAATGAGGGATGCACTTAATGCATCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCGAGGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCA
ACTGGTTCTGACAATGATAGTATTAACGTTATTTTGAAGGACATTGCTGGACAAACTTCAGGATGCATGCCTAGGGACATTCGAGGCTTAATTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAA
CAGAAATGGATATTCAAACTCGGAAGTAGATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAACAGCTTTGGGGACACCAAAAGTGCCGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGCTGCCTCTTGTGCACAAAG
AGCTCTTTTCGTCTGGGTTGCGTCAACGTTCTGGTGTTCTTCTATATGGGCCTCCTGGCACGGGCAAGACATTGTTGGCAAAAGCAGTGGCAACTGAGTGTTCACTGAATTTCCTCAGTGTGAAGGGACCTGAGCTTATCAACATGTATATAGGAGAGTCAGAAAAGAATGTTCGAGATATATTCCAAAAGGCAAGGGCT
GCTCGACCGTGTGTCATTTTCTTTGATGAGCTTGATGCTCTTGCTCCTGCTCGTGGGGCATCTGGTGATTCAGGTGGAGTCATGGACAGAGTAGTATCTCAGgtacattgactacatgctttatttctatatgatgtatagagctagaatttcatttcagcactttgtaaaaacatgcaaatcaacacaagtgtttacct
atatggatcaccactcatataaagggtggaaggcatacatgtctgtatgttacgaattgtatgatccatattttattgttttacagATGCTTGCTGAAATTGATGG
Intron 7 GTAAACAAGT ... TGTCTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.08 | 25 | 11 | 4 |
| A2 | 19.35 | 25 | 8 | 4 |
| A3 | 19.35 | 25 | 7 | 5 |
| A4 | 6.38 | 22 | 2 | 1 |
| A5 | 28.57 | 5 | 3 | 1 |
| A6 | 13.97 | 77 | 16 | 9 |
| A7 | 18.58 | 149 | 53 | 15 |
| A8 | 18.07 | 170 | 45 | 30 |
| A9 | 13.76 | 94 | 16 | 14 |
| A10 | 18.75 | 104 | 31 | 17 |
>TRINITY_DN44940_c0_g1_i1 from sample A8 / Example spliced isoformCAAGAAGCCTCTGATATTGGCAAGTACTGCTGAAGTTGTTAATTCCGTCCTGCTTTCTGGAGAACTTGCTGGTGAGCCATGTACCCAAGCAAATTTGGTATCTAATTATTCGAGTTTTTGCTCCATCCGTCTTTCTGCGGGGCTTCTGCGTTTCCCTCGGGATGCGAAGGAGGGTTCTGAATTGAATGACAGTTTGGAAG
AATTATTGTCCAAGCGAGGCGGGAAGGAAGCACCTTACGATGGTGCAGCTATTGTGGGGGTGGCATCAACTACATTAAGGGACTTATCTCTGACTTCTGGGTCATGGGTGATTGTGAAAGATGTCCATACTAATGTGGGGAGGCTTGCAAGAGCCCTTGTTTTGGATCCTCCAGACAAAAAATCTATTGAATTCCACAAA
TCACAGAAAGTATTATATTCTCGGCTGCCATGCTTGAAGCATATGGGCCTTCTATCGGCTTACTCTTTGCCTGAAGAATATACTTTAGCCGTTGATTTACAAGTGGCATATCTCTCACCTCAACTAGCCTTCAATATCGGGCTACATTTAACTTGCCTGAAAACCCTCATAGGACATGGTAAAGAATCTTTTGATTCTCT
ATTTTCTGAGAGTGTTTCTGCTGAAAAAAAGTCTCCAAATGCAACTGCTGAAGTGGAAATCATTCCATTCACTATTCTTCATCAATCACCAAGTTCAGTCCTGCCTAGAAACCCGAATCATAATTTTGAGGGTTCTCAACCTACTATGCCTAAATATGCTTCACACTTAAGAATATCTTTTGTAAAAATACCTTCTAGTG
GAGTCCTTGATGGTTTAAAGAGGAGCAGCAATTCTCTAGAAGCAAAAGAACGCCAAGAAATGATAGATACTGCCTTACATCATTATTTTAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAATTGCAAATCAGAGATTTGCAGTCACTGTAACAAGAAGACAGCAGCAGATTCTTCA
GAAGATATCATCTATTTTAAGGTGATGGCCATGGAGCCCTTGAATGAAGCTATTCTCTGTGTTAATTGCAATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTTATGGCTACCGGAAGTGCAGAATGCACACCTTTGCAAGAGGATATAGCTCGACATTTGGCATCTTTGTTGGCACC
TTGCTTACATCCTTCTGCATTTTCATATAAATTTAAGATGACAGTGCTCCTGCATGGCCCTGAAGGCTGTGGAAAACGCACTGTTGTCAGACAGGTTGCAAAGAGCTTGGGTCTTCATGTTGTTGAATATAATTGTTATGATCTGCTGGGAGCTTCAGAAAGGAAGACATCTGTTGCTCTTGGACAAGCATTCAATACTG
CTCAGAGATATGCTCCTGTTATTCTTCTGTTGCGTCGTTTTAATGCCTTGGGAAAGTCTTCAACGAGTGGAAATATGTCATCTGATCAGATTGGGTCTGCCTCTCAAGTTGCTTCTGTTCTTCACCAATTTACTCAAGCCCACATGAATAAGCAAGAGGATGATGTTGATGCGGTTGAAATGAGGGATGCACTTAATGCA
TCTAAAACATGGGGATTGAAAGAAGGTCTAGTATTCCTAGTTGCAGCAGCTGACAGTACCGAGGATATCACATCCTCTATTAGGCGTTGCTTCAGTCATGAGATAAGTATGGGGGCTCCTACAGAGACACAACGGATCAAATTGCTCTCTCATTCTGTTCACAGTGTGGCAACTGGTTCTGACAATGATAGTATTAACGT
TATTTTGAAGGACATTGCTGGACAAACTTCAGGATGCATGCCTAGGGACATTCGAGGCTTAATTGCTGATGCAGGAGCATGCCTGGTTTCCAGAATCATGGAAAAGGATAAGAAAAATGAACTGAATGAAAATACTCAAAGCCTTGATGCGATGTCAAATGCTATGGAGAACAGAAATGGATATTCAAACTCGGAAGTAG
ATTCCTTGTGTAAGGAAGACTTGGAAAAAGCATTAGACCGAATGAAGAAGAGAACCGCAACAGCTTTGGGGACACCAAAAGTGCCGAATGTAAAATGGGAAGATGTTGGTGGACTTGAGGATGTGAAGAAGTCCATTCTTGACACAGTACAGCTGCCTCTTGTGCACAAAGAGCTCTTTTCGTCTGGGTTGCGTCAACGT
TCTGGTGTTCTTCTATATGGGCCTCCTGGCACGGGCAAGACATTGTTGGCAAAAGCAGTGGCAACTGAATGTTCACTGAATTTCCTCAGTGTGAAGGGACCTGAGCTTATCAACATGTATATAGGAGAGTCAGAAAAGAATGTTCGAGATATATTCCAAAAGGCAAGGGCTGCTCGACCGTGTGTCATTTTCTTTGATGA
GCTTGATGCTCTTGCTCCTGCTCGTGGGGCATCTGGTGATTCAGGTGGAGTCATGGACAGAGTAGTATCTCAGATGCTTGCTGAAATTGATGGTCTAAATGAGACTACCCAGGACTTGTTTATTATAGGGGCTAGTAATCGGCCTGATCTTATTGATCCAGCCCTTTTACGGCCTGGCCGGTTTGACAAATTATTGTACG
TTGGTATCAGCTCCGACTCATCTTATAGAGAACGGGTACTGGGAGCATTGACCCGGAAGTTCAAACTTCATGGAAATGTATCATTGTCATCAATAGCCAAAAGATGCCCCCCGAATTTTACTGGTGCTGACATGTATGCTTTATGTGCGGATGCCTGGCTTCAAGCTGTGAAGCGAAAGTTATCAGGTAAAAGGGCAGAC
ACCTCAGGGGACAATGAAGATCACGATTCAGTTATTGTTGGGCATGAAGATTTCATGAAGGCACTTGGAGAATTATCCCCATCGCTCTCTCAGGCAGAACTTAGTAGGTATGAAAGGTTACGACAGCAGTTTGAAGGCAAGTCAAAATAAAAACTATATCTTGCAAATGCATGGGAGAATCGTTTTCTTTCCTTCTCAGG
GAGAGATTAACAAGATATGAGAGGTCATGGATCCATTTATACTTTTGAATAAAATACAAGATGATTTGCTCAACAAGATCATAAGTCAGAAGATTGAACAATGAACTTATTCACTATCTATCCAAAGACTTGCCACCATTTTTGCCGAGCTGGAGATTAGCAGGGGATTTGATTTGAGGGGCAGTTTGTAGGAAACAGAG
TCATAGGAGAAGTATTGCTGTTTCTGCCTCAGGCAGAGTAGATTAACTCAGTGCATTTTTCTAATAAAACCACTGTGTCCATTGCTGAAACATAAACGATGTTTGACAGAATGAAAGTGGCATACCATCTGCCCTAAGATGTGTCACATGTAAACTTTAGTGGCAAATGATTTCTCTATTGTGACCATTTGAAGGAAATT
CAACATCGGTCATCAGAGAATGATATATTAATCCACACTAAAGCTTAAAGCTTTTCCTGTAACGTACAAAGTTACATTTTTAATGACTAGATGTGAAAGCAACACGTCACCGAATTTTATTGTAAGCATATTGCCATGTTCAAGTTATACCCTCCTGTATCATCATAGACTTGTTTAACGATCCATAACAGCTGAATTTG
TTGCATTGCATTATTTAAGCGCATTATGACCAAGTTATTTGATACTTTATTGTCAAAGTTTATCTATATTCAGGATCGCCCCTTTGGGTTCCAGACTAAAAGCTGACCTAAAAGCTGGCTTTGTAGATTGTTGATAAATTATGCAATTGTCAAAGTGGAAGACAACTTTGTGAATTTCCAATACCCGACCAGGGAGTGTA
TTGTGAAACACTCAGTTTGGTTGTAC
>TRINITY_DN44940_c0_g1_i2 from sample A8 / Example unspliced isoform:ATGCTTGCTGAAATTGATGGTCTAAATGAGACTACCCAGGACTTGTTTATTATAGGGGCTAGTAATCGGCCTGATCTTATTGATCCAGCCCTTTTACGGCCTGGCCGGTTTGACAAATTATTGTACGTTGGTATCAGCTCCGACTCATCTTATAGAGAACGGGTACTGGGAGCATTGACCCGGAAGTTCAAACTTCATGG
AAATGTATCATTGTCATCAATAGCCAAAAGATGCCCCCCGAATTTTACTGGTGCTGACATGTATGCTTTATGTGCGGATGCCTGGCTTCAAGCTGTGAAGCGAAAGTTATCAGGTAAAAGGGCAGACACCTCAGGGGACAATGAAGATCACGATTCAGTTATTGTTGGGCATGAAGATTTCATGAAGGCACTTGGAGAAT
TATCCCCATCGCTCTCTCAGGCAGAACTTAGTAGGTATGAAAGGTTACGACAGCAGTTTGAAGGCAAGTCAAAATAAAAACTATATCTTGCAAATGCATGGGAGAATCGTTTTCTTTCCTTCTCAGGGAGAGATTAACAAGATATGAGAGGTCATGGATCCATTTATACTTTTGAATAAAATACAAGATGATTTGCTCAA
CAAGATCATAAGTCAGAAGATTGAACAATGAACTTATTCACTATCTATCCAAAGgtaaacaagtaaaaaattcattaatttttttggcaaggcttcgcacctctaaacatttttttatgtttaacttaatcttttcttcacatccattttacatgtttgcaatcaattctagtaatttcttgtatcttaatttataatcc
acctgagtctatttttttctgtctcacagACTTGCCACCATTTTTGCCGAGCTGGAGATTAGCAGGGGATTTGATTTGAGGGGCAGTTTGTAGGAAACAGAGTCATAGGAGAAGTATTGCTGTTTCTGCCTCAGGCAGAGTAGATTAACTCAGTGCATTTTTCTAATAAAACCACTGTGTCCATTGCTGAAACATAAACG
ATGTTTGACAGAATGAAAGTGGCATACCATCTGCCCTAAGATGTGTCACATGTAAACTTTAGTGGCAAATGATTTCTCTATTGTGACCATTTGAAGGAAATTCAACATCGGTCATCAGAGAATGATATATTAATCCACACTAAAGCTTAAAGCTTTTCCTGTAACGTACAAAGTTACATTTTTAATGACTAGATGTGAAA
GCAACACGTCACCGAATTTTATTGTAAGCATATTGCCATGTTCAAGTTATACCCTCCTGTATCATCATAGACTTGTTTAACGATCCATAACAGCTGAATTTGTTGCATTGCATTATTTAAGCGCATTATGACCAAGTTATTTGATACTTTATTGTCAAAGTTTATCTATATTCAGGATCGCCCCTTTGGGTTCCAGACTA
AAAGCTGACCTAAAAGCTGGCTTTGTAGATTGTTGATAAATTATGCAATTGTCAAAGTGGAAGACAACTTTGTGAATTTCCAATACCCGACCAGGGAGTGTATTGTGAAACACTCAGTTTGGTTGTAC