sp|Q8S944|DRP3A_ARATH ----> Dynamin-related protein 3A
Intron 1 GTAATATTCT ... GCTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.4 | 239.2 | 4 | 11 |
| A2 | 2.85 | 201.3 | 0 | 5.9 |
| A3 | 5.23 | 219 | 0 | 12.1 |
| A4 | 6.56 | 176 | 0 | 12.4 |
| A5 | 0 | 83 | 0 | 0 |
| A6 | 0 | 86 | 0 | 0 |
| A7 | 2.06 | 298.2 | 0 | 6.3 |
| A8 | 2.7 | 144 | 0 | 4 |
| A9 | 1.79 | 219 | 0 | 4 |
| A10 | 0.34 | 214 | 0 | 0.7 |
>TRINITY_DN129553_c4_g1_i12 from sample A1 / Example spliced isoformCGAGATCGTTATTAACTTTTTTTCGACTCTCGAGATTCCATGGATCGTTTATGTTCTGGACATTATATATCTCATCATCCCGGGAGATGTGGAAAACGAGCAAACTCAAGAAATTGAAAGCAAAAAGCAGAGAGGAGCAAAGTTTGAAAGAGGGGCGAAGAATTCCTCCGAATGGCAGAGCAGCGTCATAGCAATATCAA
CAACACTGATGGCAATCCAAATTCAAATTTATCACCGCCTCCTGCTTCTTTAGGGCAATCCGTGATTCCCATTGTCAACAGATTGCAGGACATATTTGCCCAGCTGGGCAGTGCCTCCACCATTGATTTGCCTCAGGTGGCCGTCGTGGGCAGCCAGAGCAGCGGGAAATCCAGCGTTCTAGAGGCTCTTGTTGGCCGAG
ATTTTCTACCGAGAGGAGCAGACATCTGCACTCGCAGGCCTTTGGTTCTGCAGCTCGTTCAACTTCCCCAAAGGGAGGATGGCTCATTATCGGAGACCGCCGAGTGGGGAGAGTTCCTGCATCTCACTGGAAGGCGGTTTTTTGATTTCAGCGCCATTCGGAGGGAAATTCAGGCTGAGACAGAGAAGGAACTAGGGTTA
AACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGTTTCTCCTGCAAA
CTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGGATATTATTGCAA
ACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCGACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTGGTGAAGGAACTT
TCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGCTGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGAGGAAGTTGATCC
TTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACTGGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCATCAATGCGAAACAATTG
AGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACACAGATCTGCCAAG
GAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAGTGGCGAGTCTCG
TGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATATTGTCAGGAAAA
ATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCAGCATGGACATTG
GATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCGA
GCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTTC
AAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCGGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATATA
AATAAATATAAATATCTTTAATGCAATCAGACTTATGTAACTTTTATGGGCTACAACTTCAGGACTTATTGTGGATTCCTGGCCTTATTGCTTTAGGCTCCAGAGGAAGCAAATTAGAG
>TRINITY_DN129553_c4_g1_i3 from sample A1 / Example unspliced isoform:GAACAATAGGTGTGATAACAAAGgtaatattcttctaatggttgtagaagaattttggatgtttttaatatggaaaaatgtcggatgctttttatacagcaccgagttatttagactgtaatttatatttgaattggatgcttgtgcagCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAAT
GTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGGTATGTCTAATATACATATTTTCATTTATGTAAAATGCTTGAACAATAAGTAATTTTCACATTTTATGGTGTGACTTATAAAATGTAGGATGTCTTTTTCTTTCGTAACATGTTTATACACTATAGCTTCTAACGCTTATTGTTTTACT
TTTATCTAATCTTACTCACTTAAGCAAATCCTTTATAGTGAAATCATAGGGGAAGAACTGATTGTCTTATTTTTTTTCCACGAAAAAATGTATTTTTATTCCATTCAGAACCAAAAATACATTCCTCAGGTGCTTGAAGCACAAACAACAAGAAAACAAGGTATAGGATCAGGTCATAAGCCTGCCATATTGAAGCCCAA
AAACACAAAATGACTGTCATAGATCTTAACATGAACAGAGCAGTCAAAGTTGACTGTATACCCAAGTTCAGTCATCAGAAATCTCTGAGAAATAGCTGCCTACAGGGAACAGAAAGACCATTCTGGTATTCTACCAACTGGAGAGTATTCTCTTGTAGGGTCAATCCTTCCTTCGACAATTTATCTACATCCTGGTTGTT
CTCTAAAG
Intron 2 GTAAGTTCTA ... ACTCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.45 | 278.7 | 24.8 | 63 |
| A2 | 21.04 | 240.2 | 22.3 | 64 |
| A3 | 16.93 | 265.1 | 20.2 | 54 |
| A4 | 17.67 | 186.4 | 16.4 | 40 |
| A5 | 18.66 | 82.8 | 9.2 | 19 |
| A6 | 23.38 | 658.8 | 49.4 | 201 |
| A7 | 19.01 | 1031.8 | 90.4 | 242 |
| A8 | 22.74 | 1389.9 | 108.2 | 409 |
| A9 | 21.08 | 969.7 | 88.4 | 259 |
| A10 | 20.63 | 773.3 | 63.4 | 201 |
>TRINITY_DN111345_c3_g2_i6 from sample A3 / Example spliced isoformTGACACCTGTCACATACGAGATCGTTATTAACTTTTTTTCGACTCTCGAGATTCCATGGATCGTTTATGTTCTGGACATTATATATCTCATCATCCCGGGAGATGTGGAAAACGAGCAAACTCAAGAAATTGAAAGCAAAAAGCAGAGAGGAGCAAAGTTTGAAAGAGGGGCGAAGAATTCCTCCGAATGGCAGAGCAGC
GTCATAGCAATATCAACAACACTGATGGCAATCCAAATTCAAATTTATCACCGCCTCCTGCTTCTTTAGGGCAATCCGTGATTCCCATTGTCAACAGATTGCAGGACATATTTGCCCAGCTGGGCAGTGCCTCCACCATTGATTTGCCTCAGGTGGCCGTCGTGGGCAGCCAGAGCAGCGGGAAATCCAGCGTTCTAGAG
GCTCTTGTTGGCCGAGATTTTCTACCGAGAGGAGCAGACATCTGCACTCGCAGGCCTTTGGTTCTGCAGCTCGTTCAACTTCCCCAAAGGGAGGATGGCTCATTATCGGAGACCGCCGAGTGGGGAGAGTTCCTGCATCTCACTGGAAGGCGGTTTTTTGATTTCAGCGCCATTCGGAGGGAAATTCAGGCTGAGACAGA
GAAGGAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAG
CTGTTTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAA
GAGGATATTATTGCAAACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCGACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAG
TGTGGTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGCTGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCT
TAGAGGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACTGGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCAT
CAATGCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCA
ACACAGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTG
GAAGTGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTAC
AATATTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCA
AGCAGCATGGACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGT
CTTCTCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCT
CCCTACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCGGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTAC
TGGGGTATGAAATATAAATAAATATAAATATCTTTAATGCAATCAGACTTATGTAACTTTTATGGGCA
>TRINITY_DN111345_c3_g2_i8 from sample A3 / Example unspliced isoform:AGGTTTTACAGCAAGCAGCATGGgtaagttctataacctatatttagggagatattctattatttcgttatgttgtgtttgtgaaaggccttatcctgtgtagtactgctgtaaggtattgtgatttaatcatgcctataatgcataagtatttggtatttaatagatacagaagggtaaggctattttgaatttgtgcc
gtaatatattcatttatggatcgtcaatataccaatattataaatgcatgcacattatggataatgtttatgctgtggatttactcattcagACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCAT
GCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAAT
GATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCGGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGT
ATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATATAAATAAATATAAATATCTTTAATGCAATCAGACTTATGTAACTTTTATGGGCA
Intron 3 GTAAGTGTAA ... CTTGCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 68 | 17 | 11 |
| A2 | 23.81 | 32 | 10 | 6 |
| A3 | 14.04 | 49 | 8 | 11.5 |
| A4 | 20.69 | 69 | 18 | 7.5 |
| A5 | 17.39 | 19 | 4 | 7 |
| A6 | 9.09 | 10 | 1 | 1.5 |
| A7 | 31.03 | 20 | 9 | 2.5 |
| A8 | 25 | 9 | 3 | 0.5 |
| A9 | 26.67 | 22 | 8 | 4 |
| A10 | 28.13 | 23 | 9 | 2.5 |
>TRINITY_DN111345_c3_g2_i15 from sample A3 / Example spliced isoformGCACCAACGAAATATTGCTGTAAGGGCTGGTTTTATAACCCTGACACATCACGGTCCGTTGCCCTTCCGATCTCCCGCATTGTCAAACCCCTGTCGAGAATCTTTTTATCAACGCGGCGAGATTCGATCTCGCGACGCAGCATGGCCGAGGATAGCAACGCAAACCCTGGTTTCGGCCAGTCGTTGGTCCCTGTGATAAA
CAAGCTGCAGGATATATTCGCCAAACTGGGCGGCGGTTCCGTGATCGATCTCCCGCAGGTTGCCGTTGTCGGAAGTCAGAGCAGCGGGAAGTCTAGCGTCCTGGAAGCCCTGGTTGGCCGGGATTTTCTTCCCCGGGGATCGGACATCTGCACTCGCCGGCCTCTTGTACTACAGCTCGTTCAAGTCCCTCACCCGGCCG
AGGAGTGGGAGTATGTCGAGTGGGGGGAGTTCTTGCATCTTCCCGGTCGGACATTCACCGACTTTTCGGTCATTGAGGGCGAAATTCAGGCTGAAACAGAGAGGGAAGTTGGAGCCAACATGGGCATCTCGGATAAGCCCATTCGATTGAAAATATTTTCTCCATATGTATTGAACATTACTCTGGTGGACTTGCCTGGT
ATAACAAAGGTTCCAGTTGGTGATCAACCAGCAGACATTGAGGCTCGCATTAGAACAATGGTTATGTCATACATTACGAATCCTTCTTGTCTTATCCTAGCAGTCTCTCCAGCTAACTCTGATCTGGCCAATTCAGATGCCCTTCAGATTGCAAGAACAGCTGACGTCGATGGATCTCGCACAATAGGCGTGATTACAAA
GCTGGATATTATGGACAGAGGAACTGATGCTTGTAATTTACTTCTTGGAAATGTGATCCCACTTCGCCTTGGTTATGTTGGGGTTGTTAATCGAAGTCAAGAGGACATTATCGCAAACAAAAGCATACGAGATGCACTTGCATCAGAGGAGAATTTTTTTCGCAGCCATGAGGTGTACCACAGTCTATCTGATCACTGTG
GTATTCCTCAATTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTGGTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGCTGAACATACTTACAAAATACACACACGCATTT
AATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGAGGTGCCATAATTAACTTACAAGTTTCACAGTTCACTAATAATCTTTCTTAAAGACATATATGTAAGGAGCTTGGAATTTATCTTTCTACAAGGTTT
CTGTTTTAAATTATTCTATATTGGTGTGAATTTTCTCTAGGCACTTAATGATTGCTATAGCTTATACAGCAGAATTTATATTTCATGATAAGATATACAGGATTCTATAATCGTGTGACAGGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACTGGCCCAAAAAATGCTC
TGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCATCAATGCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGT
CTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACACAGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAG
GAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAGTGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATG
TAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATATTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCAT
AGTGTCTTTATCAAGAAGCTTTACAG
>TRINITY_DN111345_c3_g2_i4 from sample A3 / Example unspliced isoform:ATGTAAAATACTCAAAAGCTCTTTCTGTAATGTGAAATGGCCTATGAAGGAAATTCATGTCTTGATTTCATAAATGCACTGTAATGTTCTTAAAAGTCTCTTGTCTCATAATTTAATTCCAATCAGTTGGATGAAAAAATAATTGTAGGCATAGCATAGTTTAATTCTAAACTTTCGGCAGTCTGTTTCTCGTCAAAATG
GTAAAACCGAGTCCTTAAAATTGATTGCATGATGTAAGATAACAAAATCTCTTTAATATTGTGGTTATATGTATTACTCAATAGATTTTTATAAGGATGCATGCCCTTCGAGTCCTCACTTCATGAACATTTGTAAACATTTGTAAGATCTTCTGGTGCTAAAGTAGTGCAGGCTGAAACAGAGAGGGAAGTTGGAGCCA
ACATGGGCATCTCGGATAAGCCCATTCGATTGAAAATATTTTCTCCATATGTATTGAACATTACTCTGGTGGACTTGCCTGGTATAACAAAGGTTCCAGTTGGTGATCAACCAGCAGACATTGAGGCTCGCATTAGAACAATGGTTATGTCATACATTACGAATCCTTCTTGTCTTATCCTAGCAGTCTCTCCAGCTAAC
TCTGATCTGGCCAATTCAGATGCCCTTCAGATTGCAAGAACAGCTGACGTCGATGgtaagtgtaatttgaaagttttgaaaatacaggtagtcatttgattttgttttccaatttcaccctgaatgctttgcattttagtaaaatgtaccttctcatgttttcggctcattgggatcctttcatacggggattggaactc
ttgcaacagGATCTCGCACAATAGGCGTGATTACAAAGCTGGATATTATGGACAGAGGAACTGATGCTTGTAATTTACTTCTTGGAAATGTGATCCCACTTCGCCTTGGTTATGTTGGGGTTGTTAATCGAAGTCAAGAGGACATTATCGCAAACAAAAGCATACGAGATGCACTTGCATCAGAGGAGAATTTTTTTCGC
AGCCATGAGGTGTACCGCAGTCTATCTGAACACTGTGGTATTCCCCAATTAGCAAAGAAATTGAATCAGGTAATCATTGCCTCAGTGC
Intron 4 GTAAGTAAAT ... TGCTTACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.29 | 456 | 110 | 108 |
| A2 | 16.61 | 359 | 70 | 73 |
| A3 | 17.84 | 410 | 88 | 90 |
| A4 | 17.63 | 390 | 94 | 73 |
| A5 | 15.89 | 172 | 34 | 31 |
| A6 | 18.95 | 246 | 59 | 56 |
| A7 | 17.71 | 734 | 167 | 149 |
| A8 | 16.39 | 352 | 64 | 74 |
| A9 | 17.08 | 551 | 96 | 131 |
| A10 | 15.81 | 559 | 126 | 84 |
>TRINITY_DN129553_c4_g1_i12 from sample A1 / Example spliced isoformCGAGATCGTTATTAACTTTTTTTCGACTCTCGAGATTCCATGGATCGTTTATGTTCTGGACATTATATATCTCATCATCCCGGGAGATGTGGAAAACGAGCAAACTCAAGAAATTGAAAGCAAAAAGCAGAGAGGAGCAAAGTTTGAAAGAGGGGCGAAGAATTCCTCCGAATGGCAGAGCAGCGTCATAGCAATATCAA
CAACACTGATGGCAATCCAAATTCAAATTTATCACCGCCTCCTGCTTCTTTAGGGCAATCCGTGATTCCCATTGTCAACAGATTGCAGGACATATTTGCCCAGCTGGGCAGTGCCTCCACCATTGATTTGCCTCAGGTGGCCGTCGTGGGCAGCCAGAGCAGCGGGAAATCCAGCGTTCTAGAGGCTCTTGTTGGCCGAG
ATTTTCTACCGAGAGGAGCAGACATCTGCACTCGCAGGCCTTTGGTTCTGCAGCTCGTTCAACTTCCCCAAAGGGAGGATGGCTCATTATCGGAGACCGCCGAGTGGGGAGAGTTCCTGCATCTCACTGGAAGGCGGTTTTTTGATTTCAGCGCCATTCGGAGGGAAATTCAGGCTGAGACAGAGAAGGAACTAGGGTTA
AACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGTTTCTCCTGCAAA
CTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGGATATTATTGCAA
ACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCGACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTGGTGAAGGAACTT
TCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGCTGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGAGGAAGTTGATCC
TTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACTGGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCATCAATGCGAAACAATTG
AGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACACAGATCTGCCAAG
GAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAGTGGCGAGTCTCG
TGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATATTGTCAGGAAAA
ATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCAGCATGGACATTG
GATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCGA
GCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTTC
AAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCGGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATATA
AATAAATATAAATATCTTTAATGCAATCAGACTTATGTAACTTTTATGGGCTACAACTTCAGGACTTATTGTGGATTCCTGGCCTTATTGCTTTAGGCTCCAGAGGAAGCAAATTAGAG
>TRINITY_DN129553_c4_g1_i4 from sample A1 / Example unspliced isoform:CGAGATCGTTATTAACTTTTTTTCGACTCTCGAGATTCCATGGATCGTTTATGTTCTGGACATTATATATCTCATCATCCCGGGAGATGTGGAAAACGAGCAAACTCAAGAAATTGAAAGCAAAAAGCAGAGAGGAGCAAAGTTTGAAAGAGGGGCGAAGAATTCCTCCGAATGGCAGAGCAGCGTCATAGCAATATCAA
CAACACTGATGGCAATCCAAATTCAAATTTATCACCGCCTCCTGCTTCTTTAGGGCAATCCGTGATTCCCATTGTCAACAGATTGCAGGACATATTTGCCCAGCTGGGCAGTGCCTCCACCATTGATTTGCCTCAGGTGGCCGTCGTGGGCAGCCAGAGCAGCGGGAAATCCAGCGTTCTAGAGGCTCTTGTTGGCCGAG
ATTTTCTACCGAGAGGAGCAGACATCTGCACTCGCAGGCCTTTGGTTCTGCAGCTCGTTCAACTTCCCCAAAGGGAGGATGGCTCATTATCGGAGACCGCCGAGTGGGGAGAGTTCCTGCATCTCACTGGAAGGCGGTTTTTTGATTTCAGCGCCATTCGGAGGGAAATTCAGGCTGAGACAGAGAAGGAACTAGGGTTA
AACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGTTTCTCCTGCAAA
CTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGGATATTATTGCAA
ACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCGACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTGGTGAAGGAACTT
TCTTCCTATGGCGAGATCATAGATTCCAAAgtaagtaaatttaatgacatcaaaactagcctacatatccagtcagacaaaagtagcaacaaacttctaaaactatctgactggacactgattgacttttgttgtaggctgcaaatacttcatcagagtttgcttttgaaaagtttatcttacgagaaatattttatttt
gatgttacttaaatggacgtcagttcttattttgtcatctgtgggttcaatatgccttgtgcgtattgtatgttttttgctaaatccatgtgtatatgcattcttatattttcgtgtttgatgcttactagGCTGGTCAAGGAGCTTTACTGCTGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGAC
GGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGAGGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACTGGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCT
TGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCATCAATGCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATC
TTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACACAGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAG
TCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAGTGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCC
TGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATATTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGA
ACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCAGCATGGACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATG
CATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTG
AATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCGGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATG
TGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATATAAATAAATATAAATATCTTTAATGCAATCAGACTTATGTAACTTTTATGGGCTACAACTTCAGGACTTATTGTGGATTCCTGGCCTTATTGCTTTAGGCT
CCAGAGGAAGCAAATTAGAG
Intron 5 GTAAGTATGC ... CTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.84 | 242.1 | 84.5 | 2 |
| A2 | 27.12 | 189.3 | 70.5 | 1 |
| A3 | 26.55 | 211.4 | 76.5 | 0 |
| A4 | 25.09 | 167 | 56 | 0 |
| A5 | 34.07 | 89 | 46 | 0 |
| A6 | 28.35 | 96 | 38 | 0 |
| A7 | 29.51 | 303.1 | 127 | 0 |
| A8 | 26.62 | 128 | 46.5 | 0 |
| A9 | 27.18 | 229 | 85.5 | 0 |
| A10 | 31.14 | 220 | 99.5 | 0 |
>TRINITY_DN112487_c6_g1_i11 from sample A2 / Example spliced isoformCGTGGTGCCAAGGGGGGACAGTCCACTTGTAAACACAAGTGGACTGTGTTTACGGGTGGACTCTGGCGAGCCAGTTTTCTAGGTGGTAGCTAATCCCCAATAAGCTAAGAATTACCAAGTTGTCAGAACTTTGAGATAATATAATCATGCCCTTTCATGCTGCTCTTTGGAGTAGTGCTGGAACAGTTAGTTTTATGTAT
TTTTAAAGTTATAAAACATATTGTATGTCTTCTCGAAATATAAATATATTTTTTCTCTGTTACTGATATTGGGGTATGTTAGCGTTCCATACCGATTTCCTGTTTGAGAGCTTGAAGCCTTTAGATATTTCTTATGCTTTCTTTTGCTTCAAGTTGTGTTCTGATATTAAGAGATTTTAATGCAGGCTGAGACAGAGAAG
GAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGT
TTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGG
ATATTATTGCAAACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCGACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTG
GTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGCTGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGA
GGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACTGGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCATCAAT
GCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACAC
AGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAG
TGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATA
TTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCA
GCATGGACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTC
TCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCT
ACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCAGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGG
GTATGAAATATAAATAAATATAAATATCTTTAATGCG
>TRINITY_DN112487_c6_g1_i10 from sample A2 / Example unspliced isoform:CGTGGTGCCAAGGGGGGACAGTCCACTTGTAAACACAAGTGGACTGTGTTTACGGGTGGACTCTGGCGAGCCAGTTTTCTAGGTGGTAGCTAATCCCCAATAAGCTAAGAATTACCAAGTTGTCAGAACTTTGAGATAATATAATCATGCCCTTTCATGCTGCTCTTTGGAGTAGTGCTGGAACAGTTAGTTTTATGTAT
TTTTAAAGTTATAAAACATATTGTATGTCTTCTCGAAATATAAATATATTTTTTCTCTGTTACTGATATTGGGGTATGTTAGCGTTCCATACCGATTTCCTGTTTGAGAGCTTGAAGCCTTTAGATATTTCTTATGCTTTCTTTTGCTTCAAGTTGTGTTCTGATATTAAGAGATTTTAATGCAGGCTGAGACAGAGAAG
GAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGT
TTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGG
CTGAGACAGAGAAGGAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGC
ATCATTCTAGCTGTTTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGgtaagtatgctttgaaccatgcttgagttgggcaaactggcagtttatttgacattgtaatttgcatagttcattcattttcagcaatgggtgcttgttgattaaatggttattgctg
gacttccatggcaaattggaatactcttagtgcctaatgtggtgattcttgttgcagGATCTCGAACAATAGGTGTGAT
Intron 6 GTATTGAATA ... TTATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.66 | 327 | 34 | 75 |
| A2 | 22.91 | 323 | 35.9 | 96 |
| A3 | 17.59 | 314 | 37.9 | 67 |
| A4 | 20.33 | 337 | 43.5 | 86 |
| A5 | 20.74 | 149 | 14.1 | 39 |
| A6 | 20.63 | 227 | 22.5 | 59 |
| A7 | 20.38 | 672 | 78.8 | 172 |
| A8 | 19.2 | 446 | 39.8 | 106 |
| A9 | 18.3 | 558 | 62.6 | 125 |
| A10 | 18.76 | 498 | 57.4 | 115 |
>TRINITY_DN112487_c6_g1_i11 from sample A2 / Example spliced isoformCGTGGTGCCAAGGGGGGACAGTCCACTTGTAAACACAAGTGGACTGTGTTTACGGGTGGACTCTGGCGAGCCAGTTTTCTAGGTGGTAGCTAATCCCCAATAAGCTAAGAATTACCAAGTTGTCAGAACTTTGAGATAATATAATCATGCCCTTTCATGCTGCTCTTTGGAGTAGTGCTGGAACAGTTAGTTTTATGTAT
TTTTAAAGTTATAAAACATATTGTATGTCTTCTCGAAATATAAATATATTTTTTCTCTGTTACTGATATTGGGGTATGTTAGCGTTCCATACCGATTTCCTGTTTGAGAGCTTGAAGCCTTTAGATATTTCTTATGCTTTCTTTTGCTTCAAGTTGTGTTCTGATATTAAGAGATTTTAATGCAGGCTGAGACAGAGAAG
GAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGT
TTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGG
ATATTATTGCAAACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCGACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTG
GTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGCTGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGA
GGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACTGGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCATCAAT
GCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACAC
AGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAG
TGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATA
TTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCA
GCATGGACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTC
TCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCT
ACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCAGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGG
GTATGAAATATAAATAAATATAAATATCTTTAATGCG
>TRINITY_DN112487_c6_g1_i2 from sample A2 / Example unspliced isoform:TTATTTATGATGAGTTGGTAAAGgtattgaataaatatttactaacttgtcatctttctcattgacatttttcttactcttttaggattgcacacgttggatgttgactagcagtccctattggcatagtggttatttcattttgcaattatttctataatgccacttattttcagATAGCCCATCAATGCGAAACAATT
GAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACACAGATCTGCCAA
GGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAGTGGCGAGTCTC
GTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATATTGTCAGGAAA
AATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCAGCATGGACATT
GGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCG
AGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTT
CAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCAGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATAT
AAATAAATATAAATATCTTTAATGCG
Intron 7 GTATTACAAG ... GTAACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.13 | 237 | 28 | 21.7 |
| A2 | 12.11 | 204 | 28 | 29 |
| A3 | 8.57 | 203 | 24 | 19.7 |
| A4 | 8.71 | 190 | 17.3 | 18.7 |
| A5 | 7.8 | 83 | 13.3 | 7.3 |
| A6 | 10.63 | 433 | 59.3 | 54 |
| A7 | 9.13 | 894 | 108 | 93 |
| A8 | 9.62 | 870 | 106 | 96.7 |
| A9 | 10.85 | 725 | 100.7 | 93 |
| A10 | 10.88 | 651 | 86 | 82.3 |
>TRINITY_DN111345_c3_g2_i6 from sample A3 / Example spliced isoformTGACACCTGTCACATACGAGATCGTTATTAACTTTTTTTCGACTCTCGAGATTCCATGGATCGTTTATGTTCTGGACATTATATATCTCATCATCCCGGGAGATGTGGAAAACGAGCAAACTCAAGAAATTGAAAGCAAAAAGCAGAGAGGAGCAAAGTTTGAAAGAGGGGCGAAGAATTCCTCCGAATGGCAGAGCAGC
GTCATAGCAATATCAACAACACTGATGGCAATCCAAATTCAAATTTATCACCGCCTCCTGCTTCTTTAGGGCAATCCGTGATTCCCATTGTCAACAGATTGCAGGACATATTTGCCCAGCTGGGCAGTGCCTCCACCATTGATTTGCCTCAGGTGGCCGTCGTGGGCAGCCAGAGCAGCGGGAAATCCAGCGTTCTAGAG
GCTCTTGTTGGCCGAGATTTTCTACCGAGAGGAGCAGACATCTGCACTCGCAGGCCTTTGGTTCTGCAGCTCGTTCAACTTCCCCAAAGGGAGGATGGCTCATTATCGGAGACCGCCGAGTGGGGAGAGTTCCTGCATCTCACTGGAAGGCGGTTTTTTGATTTCAGCGCCATTCGGAGGGAAATTCAGGCTGAGACAGA
GAAGGAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAG
CTGTTTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAA
GAGGATATTATTGCAAACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCGACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAG
TGTGGTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGCTGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCT
TAGAGGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACTGGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCAT
CAATGCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCA
ACACAGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTG
GAAGTGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTAC
AATATTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCA
AGCAGCATGGACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGT
CTTCTCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCT
CCCTACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCGGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTAC
TGGGGTATGAAATATAAATAAATATAAATATCTTTAATGCAATCAGACTTATGTAACTTTTATGGGCA
>TRINITY_DN111345_c3_g2_i10 from sample A3 / Example unspliced isoform:TGACACCTGTCACATACGAGATCGTTATTAACTTTTTTTCGACTCTCGAGATTCCATGGATCGTTTATGTTCTGGACATTATATATCTCATCATCCCGGGAGATGTGGAAAACGAGCAAACTCAAGAAATTGAAAGCAAAAAGCAGAGAGGAGCAAAGTTTGAAAGAGGGGCGAAGAATTCCTCCGAATGGCAGAGCAGC
GTCATAGCAATATCAACAACACTGATGGCAATCCAAATTCAAATTTATCACCGCCTCCTGCTTCTTTAGGGCAATCCGTGATTCCCATTGTCAACAGATTGCAGGACATATTTGCCCAGCTGGGCAGTGCCTCCACCATTGATTTGCCTCAGGTGGCCGTCGTGGGCAGCCAGAGCAGCGGGAAATCCAGCGTTCTAGAG
GCTCTTGTTGGCCGAGATTTTCTACCGAGAGGAGCAGACATCTGCACTCGCAGGCCTTTGGTTCTGCAGCTCGTTCAACTTCCCCAAAGGGAGGATGGCTCATTATCGGAGACCGCCGAGTGGGGAGAGTTCCTGCATCTCACTGGAAGGCGGTTTTTTGATTTCAGCGCCATTCGGAGGGAAATTCAGGCTGAGACAGA
GAAGGAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAG
CTGTTTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAA
GAGGATATTATTGCAAACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCGACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAG
TGTGGTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGCTGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCT
TAGAGGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACTGGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCAT
CAATGCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCA
ACACAGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTG
GAAGTGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTAC
AATATTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGgtattacaagctgttcactgtcttatgctaaaaagggtttatattagattatatttgaattttttgaattaaagttgaatctttttttac
tgcggaacctagttgtaagatgattgtaactgcagAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCAGCATGGACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGC
TACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTT
CAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCGGAGCTTGCCCTTAGAAG
ATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATATAAATAAATATAAATATCTTTAATGCAATCAGACTTATGTAACTTTTATGGGCA
Intron 8 GTAAGTTGAG ... TTGATGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.08 | 367 | 118 | 78 |
| A2 | 23.45 | 284 | 106 | 68 |
| A3 | 26.9 | 269 | 134 | 64 |
| A4 | 25.22 | 255 | 115 | 57 |
| A5 | 23.81 | 112 | 41 | 29 |
| A6 | 21.31 | 445 | 165 | 76 |
| A7 | 23.83 | 791 | 346 | 149 |
| A8 | 21.32 | 821 | 271 | 174 |
| A9 | 20.86 | 772 | 277 | 130 |
| A10 | 21.95 | 663 | 238 | 135 |
>TRINITY_DN112487_c6_g1_i2 from sample A2 / Example spliced isoformTTATTTATGATGAGTTGGTAAAGGTATTGAATAAATATTTACTAACTTGTCATCTTTCTCATTGACATTTTTCTTACTCTTTTAGGATTGCACACGTTGGATGTTGACTAGCAGTCCCTATTGGCATAGTGGTTATTTCATTTTGCAATTATTTCTATAATGCCACTTATTTTCAGATAGCCCATCAATGCGAAACAATT
GAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACACAGATCTGCCAA
GGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAGTGGCGAGTCTC
GTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATATTGTCAGGAAA
AATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCAGCATGGACATT
GGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCG
AGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTT
CAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCAGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATAT
AAATAAATATAAATATCTTTAATGCG
>TRINITY_DN112487_c6_g1_i18 from sample A2 / Example unspliced isoform:GTTCTGGACATTATATATCTCATCATCCCGGGAGATGTGGAAAACGAGCAAACTCAAGAAATTGAAAGCAAAAAGCAGAGAGGAGCAAAGTTTGAAAGAGGGGCGAAGAATTCCTCCGAATGGCAGAGCAGCGTCATAGCAATATCAACAACACTGATGGCAATCCAAATTCAAATTTATCACCGCCTCCTGCTTCTTTA
GGGCAATCCGTGATTCCCATTGTCAACAGATTGCAGGACATATTTGCCCAGCTGGGCAGTGCCTCCACCATTGATTTGCCTCAGGTGGCCGTCGTGGGCAGCCAGAGCAGCGGGAAATCCAGCGTTCTAGAGGCTCTTGTTGGCCGAGATTTTCTACCGAGAGGAGCAGACATCTGCACTCGCAGGCCTTTGGTTCTGCA
GCTCGTTCAACTTCCCCAAAGGGAGGATGGCTCATTATCGGAGACCGCCGAGTGGGGAGAGTTCCTGCATCTCACTGGAAGGCGGTTTTTTGATTTCAGCGCCATTCGGAGGGAAATTCAGGCTGAGACAGAGAAGGAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATG
TCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGTTTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCT
AATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGGATATTATTGCAAACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCG
ACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTGGTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGC
TGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGAGGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACT
GGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCATCAATGCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGAC
CTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACACAGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCAC
GGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAGTGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCA
TACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAAgtaagttgagaatatatgcttctatttggatgcacaagtgttttagcactaaatatgtttctctctactaataattttgtccttgatgtcagCCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACA
AAATCACTTCTGAGATCATATTACAATATTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAA
GGAAATTCTCAAGGTTTTACAGCAAGCAGCATGGACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAA
CAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGT
TTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCAGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATC
TTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATATAAATAAATATAAATATCTTTAATGCG
Intron 9 GTGCCATAAT ... CGTGTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.92 | 472.7 | 78.1 | 59.8 |
| A2 | 14.24 | 463 | 78.1 | 61.9 |
| A3 | 10.03 | 507 | 57.1 | 55.6 |
| A4 | 11.43 | 451 | 58.9 | 49.2 |
| A5 | 19.26 | 181 | 43.9 | 15.8 |
| A6 | 9.31 | 400 | 41.9 | 41.6 |
| A7 | 10.56 | 1061 | 128.6 | 95.5 |
| A8 | 12.15 | 618 | 87.5 | 60.1 |
| A9 | 10.7 | 879 | 108.3 | 88.1 |
| A10 | 8.97 | 869 | 87.4 | 70 |
>TRINITY_DN112487_c6_g1_i11 from sample A2 / Example spliced isoformCGTGGTGCCAAGGGGGGACAGTCCACTTGTAAACACAAGTGGACTGTGTTTACGGGTGGACTCTGGCGAGCCAGTTTTCTAGGTGGTAGCTAATCCCCAATAAGCTAAGAATTACCAAGTTGTCAGAACTTTGAGATAATATAATCATGCCCTTTCATGCTGCTCTTTGGAGTAGTGCTGGAACAGTTAGTTTTATGTAT
TTTTAAAGTTATAAAACATATTGTATGTCTTCTCGAAATATAAATATATTTTTTCTCTGTTACTGATATTGGGGTATGTTAGCGTTCCATACCGATTTCCTGTTTGAGAGCTTGAAGCCTTTAGATATTTCTTATGCTTTCTTTTGCTTCAAGTTGTGTTCTGATATTAAGAGATTTTAATGCAGGCTGAGACAGAGAAG
GAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATGTCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGT
TTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCTAATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGG
ATATTATTGCAAACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCGACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTG
GTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGCTGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGA
GGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACTGGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCATCAAT
GCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACAC
AGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAG
TGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATA
TTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCA
GCATGGACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTC
TCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCT
ACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCAGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGG
GTATGAAATATAAATAAATATAAATATCTTTAATGCG
>TRINITY_DN112487_c6_g1_i6 from sample A2 / Example unspliced isoform:GTTCTGGACATTATATATCTCATCATCCCGGGAGATGTGGAAAACGAGCAAACTCAAGAAATTGAAAGCAAAAAGCAGAGAGGAGCAAAGTTTGAAAGAGGGGCGAAGAATTCCTCCGAATGGCAGAGCAGCGTCATAGCAATATCAACAACACTGATGGCAATCCAAATTCAAATTTATCACCGCCTCCTGCTTCTTTA
GGGCAATCCGTGATTCCCATTGTCAACAGATTGCAGGACATATTTGCCCAGCTGGGCAGTGCCTCCACCATTGATTTGCCTCAGGTGGCCGTCGTGGGCAGCCAGAGCAGCGGGAAATCCAGCGTTCTAGAGGCTCTTGTTGGCCGAGATTTTCTACCGAGAGGAGCAGACATCTGCACTCGCAGGCCTTTGGTTCTGCA
GCTCGTTCAACTTCCCCAAAGGGAGGATGGCTCATTATCGGAGACCGCCGAGTGGGGAGAGTTCCTGCATCTCACTGGAAGGCGGTTTTTTGATTTCAGCGCCATTCGGAGGGAAATTCAGGCTGAGACAGAGAAGGAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATG
TCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGTTTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCT
AATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGGATATTATTGCAAACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCG
ACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTGGTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGC
TGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGAGgtgccataattaacttacaagtttcacagttcactaataatctttcttaaagacatatatgta
aggagcttggaatttatctttctacaaggtttctgttttaaattattctatattggtgtgaattttctctaggcacttaatgattgctatagcttatacagcagaatttatatttcatgataagatatacaggattctataatcgtgtgacagGAAGTTGATCCTTGTGATGAT
Intron 10 GTAATGTTAA ... AATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23 | 61.1 | 7 | 17 |
| A2 | 23.97 | 32.7 | 2 | 10 |
| A3 | 23.5 | 54 | 4 | 16 |
| A4 | 25.9 | 66.9 | 0 | 22 |
| A5 | 39.98 | 24.1 | 4 | 16 |
| A6 | 36.51 | 9.1 | 0 | 5 |
| A7 | 23.35 | 17.4 | 1 | 5 |
| A8 | 15.48 | 6.3 | 0 | 1 |
| A9 | 20.68 | 19.7 | 0 | 5 |
| A10 | 29.74 | 17.4 | 0 | 7 |
>TRINITY_DN111345_c3_g2_i4 from sample A3 / Example spliced isoformATGTAAAATACTCAAAAGCTCTTTCTGTAATGTGAAATGGCCTATGAAGGAAATTCATGTCTTGATTTCATAAATGCACTGTAATGTTCTTAAAAGTCTCTTGTCTCATAATTTAATTCCAATCAGTTGGATGAAAAAATAATTGTAGGCATAGCATAGTTTAATTCTAAACTTTCGGCAGTCTGTTTCTCGTCAAAATG
GTAAAACCGAGTCCTTAAAATTGATTGCATGATGTAAGATAACAAAATCTCTTTAATATTGTGGTTATATGTATTACTCAATAGATTTTTATAAGGATGCATGCCCTTCGAGTCCTCACTTCATGAACATTTGTAAACATTTGTAAGATCTTCTGGTGCTAAAGTAGTGCAGGCTGAAACAGAGAGGGAAGTTGGAGCCA
ACATGGGCATCTCGGATAAGCCCATTCGATTGAAAATATTTTCTCCATATGTATTGAACATTACTCTGGTGGACTTGCCTGGTATAACAAAGGTTCCAGTTGGTGATCAACCAGCAGACATTGAGGCTCGCATTAGAACAATGGTTATGTCATACATTACGAATCCTTCTTGTCTTATCCTAGCAGTCTCTCCAGCTAAC
TCTGATCTGGCCAATTCAGATGCCCTTCAGATTGCAAGAACAGCTGACGTCGATGGTAAGTGTAATTTGAAAGTTTTGAAAATACAGGTAGTCATTTGATTTTGTTTTCCAATTTCACCCTGAATGCTTTGCATTTTAGTAAAATGTACCTTCTCATGTTTTCGGCTCATTGGGATCCTTTCATACGGGGATTGGAACTC
TTGCAACAGGATCTCGCACAATAGGCGTGATTACAAAGCTGGATATTATGGACAGAGGAACTGATGCTTGTAATTTACTTCTTGGAAATGTGATCCCACTTCGCCTTGGTTATGTTGGGGTTGTTAATCGAAGTCAAGAGGACATTATCGCAAACAAAAGCATACGAGATGCACTTGCATCAGAGGAGAATTTTTTTCGC
AGCCATGAGGTGTACCGCAGTCTATCTGAACACTGTGGTATTCCCCAATTAGCAAAGAAATTGAATCAGGTAATCATTGCCTCAGTGC
>TRINITY_DN111345_c3_g2_i16 from sample A3 / Example unspliced isoform:ATGTAAAATACTCAAAAGCTCTTTCTGTAATGTGAAATGGCCTATGAAGGAAATTCATGTCTTGATTTCATAAATGCACTGTAATGTTCTTAAAAGTCTCTTGTCTCATAATTTAATTCCAATCAGTTGGATGAAAAAATAATTGTAGGCATAGCATAGTTTAATTCTAAACTTTCGGCAGTCTGTTTCTCGTCAAAATG
GTAAAACCGAGTCCTTAAAATTGATTGCATGATGTAAGATAACAAAATCTCTTTAATATTGTGGTTATATGTATTACTCAATAGATTTTTATAAGGATGCATGCCCTTCGAGTCCTCACTTCATGAACATTTGTAAACATTTGTAAGATCTTCTGGTGCTAAAGTAGTGCAGGCTGAAACAGAGAGGGAAGTTGGAGCCA
ACATGGGCATCTCGGATAAGCCCATTCGATTGAAAATATTTTCTCCATATGTATTGAACATTACTCTGGTGGACTTGCCTGGTATAACAAAGGTTCCAGTTGGTGATCAACCAGCAGACATTGAGGCTCGCATTAGAACAATGGTTATGTCATACATTACGAATCCTTCTTGTCTTATCCTAGCAGTCTCTCCAGCTAAC
TCTGATCTGGCCAATTCAGATGCCCTTCAGATTGCAAGAACAGCTGACGTCGATGGTAAGTGTAATTTGAAAGTTTTGAAAATACAGGTAGTCATTTGATTTTGTTTTCCAATTTCACCCTGAATGCTTTGCATTTTAGTAAAATGTACCTTCTCATGTTTTCGGCTCATTGGGATCCTTTCATACGGGGATTGGAACTC
TTGCAACAGGATCTCGCACAATAGGCGTGATTACAAAGgtaatgttaacgacaaataaattttaagagaatcctataatatttgatgagaaattttacgttggtttgagtgtcttagtatgacaattggcaaactgatggataaatgttgggatgcatattaatattgcagCTGGATATTATGGACAGAGGAACTGATGC
TTGTAATTTACTTCTTGGAAATGTGATCCCACTTCGCCTTGGTTATGTTGGGGTTGTTAATCGAAGTCAAGAGGACATTATCGCAAACAAAAGCATACGAGATGCACTTGCATCAGAGGAGAATTTTTTTCGCAGCCATGAGGTGTACCGCAGTCTATCTGAACACTGTGGTATTCCCCAATTAGCAAAGAAATTGAATC
AGGTAATCATTGCCTCAGTGC
Intron 11 GTATGGATCA ... TGGAGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.68 | 367 | 15 | 21 |
| A2 | 3.2 | 212 | 6 | 8 |
| A3 | 2.26 | 238 | 9 | 2 |
| A4 | 2.23 | 263 | 1 | 11 |
| A5 | 5.21 | 100 | 2 | 9 |
| A6 | 0.53 | 283 | 1 | 2 |
| A7 | 0 | 573 | 0 | 0 |
| A8 | 0.65 | 534 | 6 | 1 |
| A9 | 1.21 | 489 | 12 | 0 |
| A10 | 0.67 | 446 | 3 | 3 |
>TRINITY_DN112487_c6_g1_i2 from sample A2 / Example spliced isoformTTATTTATGATGAGTTGGTAAAGGTATTGAATAAATATTTACTAACTTGTCATCTTTCTCATTGACATTTTTCTTACTCTTTTAGGATTGCACACGTTGGATGTTGACTAGCAGTCCCTATTGGCATAGTGGTTATTTCATTTTGCAATTATTTCTATAATGCCACTTATTTTCAGATAGCCCATCAATGCGAAACAATT
GAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGACCTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACACAGATCTGCCAA
GGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAGTGGCGAGTCTC
GTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCATACAACACAGAGCATGTAATTTCCACCATTTGGTTGAATGAACCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATATTGTCAGGAAA
AATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCAGCATGGACATT
GGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCG
AGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTT
CAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCAGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATAT
AAATAAATATAAATATCTTTAATGCG
>TRINITY_DN112487_c6_g1_i7 from sample A2 / Example unspliced isoform:AAGCAGTAAGTCTTATTGCTGAATCTTGTTAAGGTTCTCCACTCTATGCGTTCATGTCTTTCTTTCATTTCACTCTGTGCCTCATATATCAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCACGGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGgtatggatc
aagtctgctttgaatgatgattttattggttacttttgggactcgtcttgggtccattattgtcaatatcgatctctctttttcttggatgttgcataaattcctgtctttctaaatttgttgttgatgtggagtgtagTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGTAAGTGATCAAATTAAC
TCAAAAGAGTAATATATATGGCTTAGTTCAAGTTCCTTTTGTATATATGGATCTATATATTGGAATCTAGGGTGTCTGAGCTAGACATTATGCTGATTTATAGGAATAGGTGTATATGCGATGCACATATTAAGTCTCTTTAGTTGTTTATTATTGGGATGCAGTTAACTTAGATCTATCATTGGAATTTATGGTATGCA
ATGAATATGTGATGAATGTATAGTGTCTTGATGAAAGGCATCATATGAAAAATTGTGTTGATCTGTTCTAGTATAAACAATATATCTGTTTTTTGAGAAGTTAAATTTTCATGTGGAACATGTGGCTTTTTTAATCTTGTCTATGCTTCAGTTTTGAGGTTGTACACAATTATCATTTCTCCCAGTATGTACTAGTTTTA
TTTGATTCCCAATTTGATTTGTACAAGTTGCTAGGCTACTTTTTCACTAAAATCTTGTTGTAGATAGTCTAAACCAACTTGATGGACCTCTCAAAATGGAACTTATCAGTTTCATCATGATTCTTATGTGAATCTCACCAATTTTCACTATAATATGTTTATGCCTATATTTCCTTCAATTTAAGGTCATGTTTTGCTTT
GATTTCAGTTTACTGAATTTCCACAACCCTCTGGGAATTGTTTACTGAATCTCTCCACAACCCTGGTAATTGCTTACTGAATCTTCACCGCCCTTTGGGAATTGCTTACTGAATCTCCACAACCTTTTGATTGGAAATGCTTATTGAATCTCCACA
Intron 12 GTAATTTCCA ... TTGATGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.26 | 358 | 177 | 78 |
| A2 | 28.08 | 274 | 146 | 68 |
| A3 | 32.45 | 256 | 182 | 64 |
| A4 | 31.07 | 244 | 163 | 57 |
| A5 | 27.46 | 107 | 52 | 29 |
| A6 | 27.6 | 400 | 229 | 76 |
| A7 | 30.64 | 703 | 472 | 149 |
| A8 | 27.29 | 742 | 383 | 174 |
| A9 | 26.63 | 697 | 376 | 130 |
| A10 | 28.19 | 633 | 362 | 135 |
>TRINITY_DN112487_c6_g1_i19 from sample A2 / Example spliced isoformGTTCTGGACATTATATATCTCATCATCCCGGGAGATGTGGAAAACGAGCAAACTCAAGAAATTGAAAGCAAAAAGCAGAGAGGAGCAAAGTTTGAAAGAGGGGCGAAGAATTCCTCCGAATGGCAGAGCAGCGTCATAGCAATATCAACAACACTGATGGCAATCCAAATTCAAATTTATCACCGCCTCCTGCTTCTTTA
GGGCAATCCGTGATTCCCATTGTCAACAGATTGCAGGACATATTTGCCCAGCTGGGCAGTGCCTCCACCATTGATTTGCCTCAGGTGGCCGTCGTGGGCAGCCAGAGCAGCGGGAAATCCAGCGTTCTAGAGGCTCTTGTTGGCCGAGATTTTCTACCGAGAGGAGCAGACATCTGCACTCGCAGGCCTTTGGTTCTGCA
GCTCGTTCAACTTCCCCAAAGGGAGGATGGCTCATTATCGGAGACCGCCGAGTGGGGAGAGTTCCTGCATCTCACTGGAAGGCGGTTTTTTGATTTCAGCGCCATTCGGAGGGAAATTCAGGCTGAGACAGAGAAGGAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATG
TCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGTTTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCT
AATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGGATATTATTGCAAACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCG
ACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTGGTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGC
TGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGAGGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACT
GGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCATCAATGCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGAC
CTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACACAGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCAC
GGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAGTGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCA
TACAACACAGAGCATCCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACAAAATCACTTCTGAGATCATATTACAATATTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTAT
CAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAAGGAAATTCTCAAGGTTTTACAGCAAGCAGCATGGACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTC
AAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAACAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACA
ATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGTTTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCAGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATC
TTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATCTTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATATAAATAAATATAAATATCTTTAATGCG
>TRINITY_DN112487_c6_g1_i18 from sample A2 / Example unspliced isoform:GTTCTGGACATTATATATCTCATCATCCCGGGAGATGTGGAAAACGAGCAAACTCAAGAAATTGAAAGCAAAAAGCAGAGAGGAGCAAAGTTTGAAAGAGGGGCGAAGAATTCCTCCGAATGGCAGAGCAGCGTCATAGCAATATCAACAACACTGATGGCAATCCAAATTCAAATTTATCACCGCCTCCTGCTTCTTTA
GGGCAATCCGTGATTCCCATTGTCAACAGATTGCAGGACATATTTGCCCAGCTGGGCAGTGCCTCCACCATTGATTTGCCTCAGGTGGCCGTCGTGGGCAGCCAGAGCAGCGGGAAATCCAGCGTTCTAGAGGCTCTTGTTGGCCGAGATTTTCTACCGAGAGGAGCAGACATCTGCACTCGCAGGCCTTTGGTTCTGCA
GCTCGTTCAACTTCCCCAAAGGGAGGATGGCTCATTATCGGAGACCGCCGAGTGGGGAGAGTTCCTGCATCTCACTGGAAGGCGGTTTTTTGATTTCAGCGCCATTCGGAGGGAAATTCAGGCTGAGACAGAGAAGGAACTAGGGTTAAACAAGGGTGTGTCTGACAAGCAAATCAGGTTAAAAATATTTTCTCCGAATG
TCCTTAATATAACATTGGTTGACTTGCCTGGGATAACAAGGGTTCCAGTGGGGGATCAACCTTCAGATATCGAGGCTAGAATCAGAACAATGATTCTATCATACATTAAGCATGAGACCTGCATCATTCTAGCTGTTTCTCCTGCAAACTCTGATTTGTCAAATTCAGATGCACTTCAGATGGCAAGAGTGGCTGACCCT
AATGGATCTCGAACAATAGGTGTGATAACAAAGCTGGATATCATGGACAGGGGAACTGATGCTCGCAACTTCCTTCTTGGAAATGTTGTTCCGCTTCGACTTGGCTATATAGGGATTGTTAATCGTAGTCAAGAGGATATTATTGCAAACAAAAGTATCCGAGATGCACTTGCTTATGAGGAAGACTTTTTCCACAGTCG
ACCGGTGTACCATAGTTTAGCTGATCGATGTGGCGTTCCCCAGTTAGCAAAGAAATTGAATCAGATTTTAGTACAACATATCAGGGCAATCTTGCCAGACTTGAAAGCCCGAATAAATAGCCAAATGGTTAGTGTGGTGAAGGAACTTTCTTCCTATGGCGAGATCATAGATTCCAAAGCTGGTCAAGGAGCTTTACTGC
TGAACATACTTACAAAATACACACACGCATTTAATTCAATCGTGGACGGTAAAAGTGAAGACATGTCGACAATAGAGTTGTCTGGAGGAGCGAGGATTCATTACATATTTCAGTCTATTTTTGTTAAGTGCTTAGAGGAAGTTGATCCTTGTGATGATCTAACTGACGAAGATATCCGGACAGCTATTCAAAATGCTACT
GGCCCAAAAAATGCTCTGTTTGTTCCCGAGGTTCCCTTTGAAGTTCTTGTACGAAGGCAGATTACTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCCCATCAATGCGAAACAATTGAGCTACAGCGGTTTCCTGTTTTACGTAGACGTCTTGAAGACGTTGTAGGGAC
CTTTTTACGTGAAGGTCTGGCTCCTGCTGAGACTATGATCGATCATCTTATTTCCATGGAGACGGATTATATCAATACTTCGCATCCATCATTTATTGGTGGCAGCAAAGCAGTGGAAGCTGCATTACAGCAACACAGATCTGCCAAGGAAACTTCTGAGTCTGATAAAACACCAACAACTGAAAAAGTCCAGAAATCAC
GGTCTTTACTTGCAAGGAAAAATATATCTGGAGTTGCTGCTGATCAGTCTACTGAGCCAGTTGCACACCATGAAAAACCTGTCTCATCTGGAAGTACATCTGTTAGTAGTTGGGGTATCTCTTCAATATTTGGAAGTGGCGAGTCTCGTGCATCATCTGCTAAAGAGAATTCAGTATCCAAGTCATATAATGAATCTGCA
TACAACACAGAGCATgtaatttccaccatttggttgaatgaagtaagttgagaatatatgcttctatttggatgcacaagtgttttagcactaaatatgtttctctctactaataattttgtccttgatgtcagCCCCCTGCTATATTGAGGCCCAGTGAAGCACTGACAGATGATGAGCTTGTTGAAATAACTGTGACA
AAATCACTTCTGAGATCATATTACAATATTGTCAGGAAAAATATCCAGGATGCTGTACCTAAAGCTATTATGCACTTTCTGGTAAATAATTCAAAACGAGAATTGCATAGTGTCTTTATCAAGAAGCTTTACAGAGAGAACTTGTTTGAAGAGATGCTTCAAGAACGGGAAGAAATAGCAACAAAGAGGAAACGCTGTAA
GGAAATTCTCAAGGTTTTACAGCAAGCAGCATGGACATTGGATGAATTGCCTTCTGAGTGTGACATATCATCGAAGACTTCAAGCACAGCAGTTGATGCTACAGGGCTACCTAGGGGTCAAAGTTTCTCACCATCCATGCATGCAATTGGAAGGGGTGAATTTGGTGGATTTGGGACTCAGTCTTCACATATGGCTCCAA
CAAGGAATACAAAGTCTCGGAAGTCTTCTCATTCGGGCGAGCAACTATCTTCATTCAATGCAAGCATATTGGCCAATGGAGGGGGACCCCCTTTAGGTTCAGGATCAGGTTATCCGACAATGAATCCATAATCAGGTTGAATGATTAAAGCAATATTGTTATCCATAACCATGCCAAGGTTTTGTCTTCTTCAATATTGT
TTTTGTACAGCTTTTCAAGCTCCTCCCTACATTATACTTCAAGCTTCAGCTCATTTTTGGTTAGATAACATCTTTTTCCTCAGAGCTTGCCCTTAGAAGATTGAAAGCTGGATAAAATCTTATTCAGGATGTGTAGATGTGTATTAAATTTCTTGTTATTTTTTTACTCTTGAGGTCGTTGTTATATAGGGATAAGCATC
TTCCTTTGTATTTTCACAAATTACTGGGGTATGAAATATAAATAAATATAAATATCTTTAATGCG