NA ----> NA
Intron 1 GTTACATCTC ... GTGATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.69 | 87 | 17 | 23 |
| A2 | 17 | 144 | 28 | 31 |
| A3 | 17.68 | 156 | 39 | 28 |
| A4 | 18.82 | 69 | 13 | 19 |
| A5 | 25.16 | 58 | 21 | 18 |
| A6 | 16.19 | 1007 | 217 | 172 |
| A7 | 15.64 | 898 | 175 | 158 |
| A8 | 15.48 | 920 | 177 | 160 |
| A9 | 16.11 | 984 | 217 | 161 |
| A10 | 14.21 | 761 | 137 | 115 |
>TRINITY_DN79560_c0_g1_i1 from sample A5 / Example spliced isoformATAATATTTTATTTAGGAGTCGTTATACTGCATAAACTAAGCAGCTCAGAGCACCATTGACTCCTATTCTCATTTTCACAAATGGCATCGAGGGCAATATTTAGTTCAATGGGTGTTCGCGGTTCTCCTGCGCCTGTTAACAGGATGGTTTGGCGGCTCTTCAGCGATGACAGGGGAAAGGTCTTCCACGAAGAGGAAAA
AGCAGCTGAGAATATCTACATTAAGAGAAAGGAGCAGGAGAGTAGGGAAAAGATGAAGCAGAAGATGGAGAAGGAGAAAAAAGCAGGAGAGGAAGCACATAAAGATGAACCATCTGCTTAATGTTTTTTGGAAAGAACAGGACCAACATGCAGTGACTATGTATTATTACTAAGTAGTAATGATGATAAGAATGCCTGCA
TATCAATAGGCTGTGATCAGCCTTTGTTTTGAAAATAAGGGTTGTTGTAATTACCCCTCCAATTTCTCCTGAGGCATTCAAAACAGGTTTTGAAAATAAGGGTTGTAATTACCCCACCAATTTCTCCTGAGACATTCAAAACATATATATCTGAAGCATTATATACCTGACATGTTTGTTCATGACACGTAATGTGTGCA
AGTCCATTTTTCTGTCTGCAATATCTGTTCATTTGGCTTTTTTAGTTTGTGCATTTTGCAG
>TRINITY_DN79560_c0_g1_i2 from sample A5 / Example unspliced isoform:ATAATATTTTATTTAGGAGTCGTTATACTGCATAAACTAAGCAGCTCAGAGCACCATTGACTCCTATTCTCATTTTCACAAATGGCATCGAGGGCAATATTTAGTTCAATGGGTGTTCGCGGTTCTCCTGCGCCTGTTAACAGGATGGTTTGGCGGCTCTTCAGCGATGACAGGGGAAAGGTCTTCCACGAAGAGGAAAA
AGCAGCTGAGAATATCTACATTAAGgttacatctcatctctgtaatttccatctgaaactaactgaaataaactgcgaatctgagtgtgaaatgaccgttttctagtttttgtgatcttttattgggatgtctgtgatggcagAGAAAGGAGCAGGAGAGTAGGGAAAAGATGAAGCAGAAGATGGAGAAGGAGAAAAAA
GCAGGAGAGGAAGCACATAAAGATGAACCATCTGCTTAATGTTTTTTGGAAAGAACAGGACCAACATGCAGTGACTATGTATTATTACTAAGTAGTAATGATGATAAGAATGCCTGCATATCAATAGGCTGTGATCAGCCTTTGTTTTGAAAATAAGGGTTGTTGTAATTACCCCTCCAATTTCTCCTGAGGCATTCAAA
ACAGGTTTTGAAAATAAGGGTTGTAATTACCCCACCAATTTCTCCTGAGACATTCAAAACATATATATCTGAAGCATTATATACCTGACATGTTTGTTCATGACACGTAATGTGTGCAAGTCCATTTTTCTGTCTGCAATATCTGTTCATTTGGCTTTTTTAGTTTGTGCATTTTGCAG
Intron 2 GTGGTTGTGA ... ATTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17 | 83 | 0 | 17 |
| A2 | 15.92 | 132 | 1 | 25 |
| A3 | 9.85 | 119 | 0 | 13 |
| A4 | 4.08 | 47 | 0 | 2 |
| A5 | 11.86 | 52 | 0 | 7 |
| A6 | 16.45 | 889 | 2 | 175 |
| A7 | 17.39 | 822 | 2 | 173 |
| A8 | 17.68 | 852 | 3 | 183 |
| A9 | 15.45 | 848 | 4 | 155 |
| A10 | 14.79 | 657 | 1 | 114 |
>TRINITY_DN39200_c0_g1_i2 from sample A7 / Example spliced isoformATGCACACTCCATATATCAAAGTTCATGTAGGCATAGCTGGTTTTCATAATATTTTATTTAGGAGTCGTTATACTGCATAAACTAAGCAGCTCAGAGCACCATTGACTCCTATTCTCATTTTCACAAATGGCATCGAGGGCAATATTTAGTTCAATGGGTGTTCGCGGTTCTCCTGCGCCTGTTAACAGGATGGTTTGGC
GGCTCTTCAGCGATGACAGGGGAAAGGTCTTCCACGAAGAGGAAAAAGCAGCTGAGAATATCTACATTAAGAGAAAGGAGCAGGAGAGTAGGGAAAAGATGAAGCAGAAGATGGAGAAGGAGAAAAAAGCAGGAGAGGAAGCACATAAAGATGAACCATCTGCTTAATGTTTTTTGGAAAGAACAGGACCAACATGCAGT
GACTATGTATTATTACTAAGTAGTAATGATGATAAGAATGCCTGCATATCAATAGGCTGTGATCAGCCTTTGTTTTGAAAATAAGGGTTGTTGTAATTACCCCTCCAATTTCTCCTGAGGCATTCAAAACAGGTTTTGAAAATAAGGGTTGTAATTACCCCACCAATTTCTCCTGAGACATTCAAAACATATATATCTGA
AGCATTATATACCTGACATGTTTGTTCATGACACGTAATGTGTGCAAGTCCATTTTTCTGTCTGCAATATCTGTTCATTTGGCTTTTTTAGTTTGTGCATTTTGCAGATTGTAGGGTAAATACTACTAAATTCTTTCAGTCTGTGTTCTCGTTTAAGATTATGTCCTCATCAGAAATGTTTGTGAATTAGGCTTGGATAT
TTAATTTGAAAAAGTGAAGTTGAAAT
>TRINITY_DN39200_c0_g1_i4 from sample A7 / Example unspliced isoform:TGAAGCAGAAGATGGAGAAGGAGgtggttgtgaatgccttggtgccatggaactgtcccagtggatctcttctgcaacatcaatgggcaaatgctttatgctttcctcaatgttgcatataatatcatgcactgggattttccttggggcgactgcaaacctagaccacgctccagtaaccttattgtgctatcatccaa
caggtggttcaagagattgaccacatggcttttcttctgttcatccaaggcagatgtcaactctaacaggtggtccgtgagattgatcacttggcttttcttttcttcatccaaggtagatgtcgaatctcttaaagagatgcattctacctgagcaccattactagtactatggttcttaaaggaaatgtgattactcc
caacttcacgggtatctgattcattggtgcctgaatcacttttcaataacttagaagtgacacatgatccaaagaatcatgtacaatcaatattaagagagtcttcatctcaaatttgctagaacatcatgggtttcaccattgcagtagaaattattaatttaccattcatatggttatcttgttgtctgacttgtaac
ttgctttatcttacaaacataagctacattagaagtccagtatcagtttaatccgtgattaagaaggaaagttatttctacatacatccaacagcagtactattttctcttgcattctcagttgaactgtttcatttagttgattggaagctatattctttgagtgtctttgtaagtgatccagattccatatatattag
ttatgcaatactgtctgttaaggtacttcctttttcagtcatcgaaaggcttagtttctagtatctacgctagcaatcttccatcttaaagtattgaatcctaaattatgtttccatttgaatctggctataatacaagtgctcattttttcagAAAAAAGCAGGAGAGGAAGCACATAAAGATGAACCATCTGCTTAAT
GTTTTTTGGAAAGAACAGGACCAACATGCAGTGACTATGTATTATTACTAAGTAGTAATGATGATAAGAATGCCTGCATATCAATAGGCTGTGATCAGCCTTTGTTTTGAAAATAAGGGTTGTTGTAATTACCCCTCCAATTTCTCCTGAGGCATTCAAAACAGGTTTTGAAAATAAGGGTTGTAATTACCCCACCAATT
TCTCCTGAGACATTCAAAACATATATATCTGAAGCATTATATACCTGACATGTTTGTTCATGACACGTAATGTGTGCAAGTCCATTTTTCTGTCTGCAATATCTGTTCATTTGGCTTTTTTAGTTTGTGCATTTTGCAGATTGTAGGGTAAATACTACTAAATTCTTTCAGTCTGTGTTCTCGTTTAAGATTATGTCCTC
ATCAGAAATGTTTGTGAATTAGGCTTGGATATTTAATTTGAAAAAGTGAAGTTGAAAT