NA ----> NA

Intron 1 GTCCGTGAGA ... CTTACTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	55.56	2	4	1
A2	86.67	1	10	3
A3	53.85	6	11	3
A4	-1	0	0	0
A5	100	0	2	1
A6	66.8	20.4	53	29
A7	52.54	36.6	69	12
A8	64.05	30.8	76	33.5
A9	65.42	19.2	47.6	25
A10	49.58	17.8	29	6

>TRINITY_DN40050_c0_g3_i2 from sample A6 / Example spliced isoform

TTTCTTTGGCGAGGAACAATTTGAAAACCTAAATGTAGTATCATTCATTTTCACAAGCCATATGTAACGACCTTCTCGTCTCAATTCGAATACCGGTGATGAAAACCATTTCGCATTATTAAAGTTAGTAGCTGAATGGGAAAGCAAGGAAGAAAACACCATGGCCGTAGTCATTCTCGGTTAAGGGAAGATGATGATCC
ATTGCCTTCGTCTGCTTATGACTCTGAACCACTAGAGCAACACCCTTTAACTACTAACGAGTTTCCTCCCGAGGAAGAAGAAGAGAAATACGAAAAATATAAATATGAGGAGCAGTCTTCACGGGACTTACCATCCAAGTTTGTCCTCTATCAGCGTTCTGTGCAGTCACCTAAGGGAGATATTAGCTATATGCAAAAGT
TCTTCTGGACCTATGTAGGAGGACGCTTGCCTCTTCACCTGCGTGAGGATTTTTGTGGAACTGCTTTTATAAGTGCAGAGTGGCTGCGTAGTGATTCTCGACGAACAGCTGTTGGAGTGGATTTGGATATTGAAGCACTTAGATGGGGTCTGGAAAACAATGTTCTAAAAGTTGGAGCTGATGCCTACTCCAGAATATGC
CTATTTCATGGAAATGTCTTACATTCTCTGACCAGTGCAAAATGTATCAAGTCTGCTTCGTTGGGTTCAGAAAATGCCAAATCATTGAGAGAAACTGAGGATGCTTCTGCCTCTGTAACAGAAAATGATGTGGTTGGTCTTGGTAGTAAGCTTGAAATCAGTGAACATGTGCAAGATTACTGTGGACGAAAGGAGAGTTT
ATGTCCACCAGCAGATATTGTTTGTGCATTTAACTACAGTTGTTGTTGCCTTCAAAGTCGTTCAGAGTTGCTATTATATTTCAAGCAAGCTTGGAATGCAATATCAAAGAAAGGAGGAATCTTTGTAATGGATCTCTATGGAGGCACATCATCAGAGCATGCACTAAAACTCCGCAGAAGATATGAGGATTTTATGTATC
AATGGGAGCAAGAGGATTTCAATATCATAAATCGGACAACAAAAATTAGTCTACATTTTTATCTCAGTAAAAATCAGCGCAGTCTTCGTCATGCTTTTACTTATTACTGGCGGCTATGGACCTTACCAGAAATCAAAGATTGCTTAGAAGAGGCTGGATTCAATTCTGTGCACTTTTGGATGCGCGAAATGCCAAATATA
CAAGAAAGGAGGGAAGCGGAGGACTTTGAAGTGAATGAAAATGTCAAGTATGAAGAAGTTTCTAGCTTCAATCAGAAGGATGCTTGGAATGCCTACATTGTTGGAATTGCAAATAAAGTTGAGAAGAAGAGCTAAAGCAGCAGTTGCTTCAACGTGCATTAATTTCCTTTTTAGATTTTGGTTGTGAATGATCAAGCGCT
ATGCACTCTGTTTTGAAATTTCCGTTATGCTCTTTTTAGTTGTCTTAGAGGCAACTGATTGGATTTTCAGCAGCACATCAAAGTTGAACATGAAGTTGATATTTGGGAAATATATGCTCTGGACGTGCTCAAACAAACATCAAATCCTTTTCAAGATGTGCTAGACGTTGCTCTTTTGCAATCAAGAGAAAACTTTGGCT
C

>TRINITY_DN40050_c0_g3_i4 from sample A6 / Example unspliced isoform:

TTTCTTTGGCGAGGAACAATTTGAAAACCTAAATGTAGTATCATTCATTTTCACAAGCCATATGTAACGACCTTCTCGTCTCAATTCGAATACCGGTGATGAAAACCATTTCGCATTATTAAAGTTAGTAGCTGAATGGGAAAGCAAGGAAGAAAACACCATGGCCGTAGTCATTCTCGGTTAAGGGAAGATGATGATCC
ATTGCCTTCGTCTGCTTATGACTCTGAACCACTAGAGCAACACCCTTTAACTACTAACGAGTTTCCTCCCGAGGAAGAAGAAGAGAAATACGAAAAATATAAATATGAGGAGCAGTCTTCACGGGACTTACCATCCAAGTTTGTCCTCTATCAGCGTTCTGTGCAGTCACCTAAGGGAGATATTAGCTATATGCAAAAGT
TCTTCTGGACCTATGTAGGAGGACGCTTGCCTCTTCACCTGCGTGAGGATTTTTGTGGAACTGCTTTTATAAGTGCAGAGTGGCTGCGTAGTGATTCTCGACGAACAGCTGTTGGAGTGGATTTGGATATTGAAGCACTTAGATGGGGTCTGGAAAACAATGTTCTAAAAGTTGGAGCTGATGCCTACTCCAGAATATGC
CTATTTCATGGAAATGTCTTACATTCTCTGACCAGTGCAAAATGTATCAAGTCTGCTTCGTTGGGTTCAGAAAATGCCAAATCATTGAGAGAAACTGAGGATGCTTCTGCCTCTGTAACAGAAAATGATGTGGTTGGTCTTGGTAGTAAGCTTGAAATCAGTGAACATGTGCAAGATTACTGTGGACGAAAGGAGAGTTT
ATGTCCACCAGCAGATATTGTTTGTGCATTTAACTACAGTTGTTGTTGCCTTCAAAGTCGTTCAGAGTTGCTATTATATTTCAAGCAAGCTTGGAATGCAATATCAAAGAAAGGAGGAATCTTTGTAATGGATCTCTATGGAGGCACATCATCAGAGCATGCACTAAAACTCCGCAGAAGATATGAGGATTTTATGTATC
AATGGGAGCAAGAGGATTTCAATATCATAAATCGGACAACAAAAATTAGTCTACATTTTTATCTCAGTAAAAATCAGCGCAGTCTTCGTCATGCTTTTACTTATTACTGGCGGCTATGGACCTTACCAGAAATCAAAGATTGCTTAGAAGAGGCTGGATTCAATTCTGTGCACTTTTGGATGCGCGAAATGCCAAATATA
CAAGAAAGGAGGGAAGCGGAGGACTTTGAAGTGAATGAAAATGTCAAGTATGAAGAAGTTTCTAGCTTCAATCAGAAGGATGCTTGGAATGCCTACATTGTTGGAATTGCAAATAAAGTTGAGAAGAAGAGCTAAAgtccgtgagataatttgtcgtttcaacattctaaacattaatgtttttctgtttgtattttgag
ttctttgggtgcactgtcacttgcaatgcaaatatccaagttttgcttttactttgtctgactaaacaaggtgactacaaaactctctttgaacagtttgattttgacaggaaaaactaatctctatgtttacttactgcagGCAGCAGTTGCTTCAACGTGCATTAATTTCCTTTTTAGATTTTGGTTGTGAATGATCA
AGCGCTATGCACTCTGTTTTGAAATTTCCGTTATGCTCTTTTTAGTTGTCTTAGAGGCAACTGATTGGATTTTCAGCAGCACATCAAAGTTGAACATGAAGTTGATATTTGGGAAATATATGCTCTGGACGTGCTCAAACAAACATCAAATCCTTTTCAAGATGTGCTAGACGTTGCTCTTTTGCAATCAAGAGAAAACT
TTGGCTC