sp|Q9SA52|CP41B_ARATH ----> Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic


Intron 1 GTATCTTCTG ... GCATTTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A151.5216172.5
A233.331052
A35024245
A440642.5
A55015150.5
A646.8125220
A754.8147570
A851.1642440
A951.9761661
A1053.4141470.5



>TRINITY_DN117056_c8_g4_i6 from sample A1 / Example spliced isoform
GACTCAGCTTGGCCATGTGAAGGTCTGCAATTCATTATTGAATTTCTTTTCCTTTTTAGATAGAGTCTAAACAGAGTAACTATCTGAAACTCCGAGAGTCTGAAGTATGAGAGATTTTACTAGAATATGAATTGTCTGGACTCTATTTGTGAAAAGTAGAGTTTTGTTTGTCTCTGAAGGATTTGGCCAGGGCTTTCCTG
ATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGGTGGTACTGGTAACCCTCTCAAGCTTGGACTCCAGAAATTCAACCCTCATGTCTTTCAAAAGAGGCAAAGATCCATAGTTTAGGCTGCTGGTTTTCCCGAGCCA
GAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTGGCAAGAAAAAGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTGGAAACCAGAGTTTGATCTTGTCAACGGTCTTACTGATTCCTACAATCTAGACTTTGGCCGAGGTACATTCAGAAAGGAGCCTGACTT
TTCAGTTGATGATATGATCCTGAATAGAACACTGGTGCTGCAAAGCTAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAATCAGATTTGTCTACATTCTGTTCATTTTCATTGTAGCTCCATTGACTACTATAGATTGTAGTAGGTTACAGTTCAATCATTTCAAAGA
GCAAGATAGCTCGTATCATGTTTGCAACGATTCAACCAGATTTGTCTACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAATTGAAATTGAAATCCTGTACTAATGTCCACTAAAGACCAAAATAGATCAAAGGGAGTAATGATTAACCAACAGTTATTTATCAATGCT
GAAATTTCTGTATTTGTTGAATGATACTAATCTTTTAGCATTTGCCACTGCCCAATTTCAATTTGGCACGACTAGAATTTGACATTCTGGAAAGGATCTTGAATTTTCAACTAGTCATATA


>TRINITY_DN117056_c8_g4_i4 from sample A1 / Example unspliced isoform:
GACTCAGCTTGGCCATGTGAAGGTCTGCAATTCATTATTGAATTTCTTTTCCTTTTTAGATAGAGTCTAAACAGAGTAACTATCTGAAACTCCGAGAGTCTGAAGTATGAGAGATTTTACTAGAATATGAATTGTCTGGACTCTATTTGTGAAAAGTAGAGTTTTGTTTGTCTCTGAAGGATTTGGCCAGGGCTTTCCTG
ATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGgtatcttctgccatgcttggtcatcaatttcattttaaaatttcgtgttagcacccttaatttaatcagatttaagcatatatgcttgtgttatttttggcatg
tacatattgttgaaattaggacctgcattttcag
GTGGTACTGGTAACCCTCTCAAGCTTGGACTCCAGAAATTCAACCCTCATGTCTTTCAAAAGAGGCAAAGATCCATAGTTTAGGTGACCGAATCGTTTGTGCCAAAGCACAAATTGTCATTGCTAGTCAAGAAGGCTTCCTGCTTAATGGGATGTGCAAGCAATCT
GCAAAGTCCACCCTCTCTGACTCCTCTAGCCAAGACTCAACTAGGATCAG




Intron 2 GTGGTACTGG ... CATAGTTTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A116.081071625
A214.12761015
A318.87862416
A413.1979618
A520521511
A614.872492562
A713.993784776
A816.1240642114
A914.744056179
A1013.713404167



>TRINITY_DN117056_c8_g4_i1 from sample A1 / Example spliced isoform
AAGATGTCACTGGAACATAAAACCGATGGAATTTACTGTTGAGGTTTGATGTTTATCTGTGACATAACGACATGGGCAGCCTTATCCTCATCTCTCGACATCCTCATGTGTGTGCCTGTGGCCAAGAACCAACCTCAAGAAGAAGCAGCATATCTTCTTTTACTACTACAACTGATGGCTTCATTTCATTGCACATCCAA
TCCAGGCACTGCCGAGCTGAATTATAATATTGCACACTAAACGAGGATGATGGCCATGAATGTAATGAACCATGTCAGTGGCATAGCCATTGCAAATACCATCAATATTAACAACAACGTTAAAGCATTTTTTACAGCATCAAAACCTGCATTGCTCACTGCATCTTCGTCCCAATTCAATGGCGTACGTCTGGATAATC
ACCCACAACAGTTTCAGACCAACAAACTATCATACAGGTCCAGGGGACGGGTGGATGTCACTGCCTCGTTATCTTCCGTACCGCCCAAGAAGATATTGATTATGGGTGGCACACGTTTTATTGGCGTTTACTTATCGCGCCTGCTAGTAAAAGCCGGCCATGAGGTAACTTTATTTACCCGTGGTAAATCACCAGTGACA
CAAAAGATTGCAGGGGAGTCAGATCAGGAATATGCAGAATTTTCATCAAAAGTATTGCACATTAAAGGTGATAGGAAGGACTTCGAATTTGTGAAGACCAAACTTTCAGTTTCTGGTTTTGATGTTGTCTATGACATAAATGGAAGAGAGGCGGTTGAAGTAGAACCCATCTTGGATGCCTTGCCAAACCTCGAGCAGTA
CATCTACTGTTCTTCTGCTGGGGTTTATCTCAAGTCTGATATACTTCCACATTTTGAGATTGATGCAGTTGACCCCAAAAGTAGGCACAAGGGAAAGCTTGACACTGAGAATCTGCTTACCGGAAGAGGCATCAATTGGACATCTTTACGGCCAGTCTACATTTATGGACCCCTCAACTACAATCCAGTGGAGGAATGGT
TCTTTCACCGTCTTAAGGCAGGGCGACCAATTCCAATTCCCAATTCTGGCCTTCAAATGACTCAGCTTGGCCATGTGAAGGATTTGGCCAGGGCTTTCCTGATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGGCT
GCT
GGTTTTCCCGAGCCAGAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTGGCAAGAAAAAGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTGGAAACCAGAGTTTGATCTTGTCAACGGTCTTACTGATTCCTACAATCTAGACTTTGGCCGAGGTACATT
CAGAAAGGAGCCTGACTTTTCAGTTGATGATATGATCCTGAATAGAACACTGGTGCTGCAAAGCTAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAATCAGATTTGTCTACATTCTGTTCATTTTCATTGTAGCTCCATTGACTACTATAGATTGTAGTAGGTTACA
GTTCAATCATTTCAAAGAGCAAGATAGCTCGTATCATGTTTGCAACGATTCAACCAGATTTGTCTACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAATTGAAATTGAAATCCTGTACTAATGTCCACTAAAGACCAAAATAGATCAAAGGGAGTAATGATTAACCAA
CAGTTATTTATCAATGCTGAAATTTCTGTATTTGTTGAATGATACTAATCTTTTAGCATTTGCCACTGCCCAATTTCAATTTGGCACGACTAGAATTTGACATTCTGGAAAGGATCTTGAATTTTCAACTAGTCATATA


>TRINITY_DN117056_c8_g4_i6 from sample A1 / Example unspliced isoform:
GACTCAGCTTGGCCATGTGAAGGTCTGCAATTCATTATTGAATTTCTTTTCCTTTTTAGATAGAGTCTAAACAGAGTAACTATCTGAAACTCCGAGAGTCTGAAGTATGAGAGATTTTACTAGAATATGAATTGTCTGGACTCTATTTGTGAAAAGTAGAGTTTTGTTTGTCTCTGAAGGATTTGGCCAGGGCTTTCCTG
ATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGgtggtactggtaaccctctcaagcttggactccagaaattcaaccctcatgtctttcaaaagaggcaaagatccatagtttagGCTGCTGGTTTTCCCGAGCCA
GAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTGGCAAGAAAAAGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTGGAAACCAGAGTTTGATCTTGTCAACGGTCTTACTGATTCCTACAATCTAGACTTTGGCCGAGGTACATTCAGAAAGGAGCCTGACTT
TTCAGTTGATGATATGATCCTGAATAGAACACTGGTGCTGCAAAGCTAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAATCAGATTTGTCTACATTCTGTTCATTTTCATTGTAGCTCCATTGACTACTATAGATTGTAGTAGGTTACAGTTCAATCATTTCAAAGA
GCAAGATAGCTCGTATCATGTTTGCAACGATTCAACCAGATTTGTCTACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAATTGAAATTGAAATCCTGTACTAATGTCCACTAAAGACCAAAATAGATCAAAGGGAGTAATGATTAACCAACAGTTATTTATCAATGCT
GAAATTTCTGTATTTGTTGAATGATACTAATCTTTTAGCATTTGCCACTGCCCAATTTCAATTTGGCACGACTAGAATTTGACATTCTGGAAAGGATCTTGAATTTTCAACTAGTCATATA




Intron 3 GTATCTTCTG ... CATAGTTTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A115.751071723
A211.6376515
A319.25862417
A412.2279418
A520521511
A614.292492261
A714.863785775
A816.240644113
A915.184056679
A1014.253404766



>TRINITY_DN105361_c3_g2_i4 from sample A3 / Example spliced isoform
ACACCTATACTTGTGAATCCCTCTTACTTTAAATCAAAGTAGCATGAAGATGTCACTGGAACATAAAACCGATGGAATTTACTGTTGAGGTTTGATGTTTATCTGTGACATAACGACATGGGCAGCCTTATCCTCATCTCTCGACATCCTCATGTGTGTGCCTGTGGCCAAGAACCAACCTCAAGAAGAAGCAGCATATC
TTCTTTTACTACTACAACTGATGGCTTCATTTCATTGCACATCCAATCCAGGCACTGCCGAGCTGAATTATAATATTGCACACTAAACGAGGATGATGGCCATGAATGTAATGAACCATGTCAGTGGCATAGCCATTGCAAATACCATCAATATTAACAACAACGTTAAAGCATTTTTTACAGCATCAAAACCTGCATTG
CTCACTGCATCTTCGTCCCAATTCAATGGCGTACGTCTGGATAATCACCCACAACAGTTTCAGACCAACAAACTATCATACAGGTCCAGGGGACGGGTGGATGTCACTGCCTCGTTATCTTCCGTACCGCCCAAGAAGATATTGATTATGGGTGGCACACGTTTTATTGGCGTTTACTTATCGCGCCTGCTAGTAAAAGC
CGGCCATGAGGTAACTTTATTTACCCGTGGTAAATCACCAGTGACACAAAAGATTGCAGGGGAGTCAGATCAGGAATATGCAGAATTTTCATCAAAAGTATTGCACATTAAAGGTGATAGGAAGGACTTCGAATTTGTGAAGACCAAACTTTCAGTTTCTGGTTTTGATGTTGTCTATGACATAAATGGAAGAGAGGCGG
TTGAAGTAGAACCCATCTTGGATGCCTTGCCAAACCTCGAGCAGTACATCTACTGTTCTTCTGCTGGGGTTTATCTCAAGTCTGATATACTTCCACATTTTGAGATTGATGCAGTTGACCCCAAAAGTAGGCACAAGGGAAAGCTTGACACTGAGAATCTGCTTACCGGAAGAGGCATCAATTGGACATCTTTACGGCCA
GTCTACATTTATGGACCCCTCAACTACAATCCAGTGGAGGAATGGTTCTTTCACCGTCTTAAGGCAGGGCGACCAATTCCAATTCCCAATTCTGGCCTTCAAATGACTCAGCTTGGCCATGTGAAGGATTTGGCCAGGGCTTTCCTGATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGC
AAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGGCTGCTGGTTTTCCCGAGCCAGAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTGGCAAGAAAAAGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTGGAAACCAGAGTTTGATCTTGTCA
ACGGTCTTACTGATTCCTACAATCTAGACTTTGGCCGAGGTACATTCAGAAAGGAGCCTGACTTTTCAGTTGATGATATGATCCTGAATAGAACACTGGTGCTGCAAAGCTAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAATCAGATTTGTCTACATTCTGTTCA
TTTTCATTGTAGCTCCATTGACTACTATAGATTGTAGTAGGTTACAGTTCAATCATTTCAAAGAGCAAGATAGCTCGTATCATGTTTGCAACGATTCAACCAGATTTGTCTACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAATTGAAATTGAAATCCTGTACTAAT
GTCCACTAAAGACCAAAATAGATCAAAGGGAGTAATGATTAACCAACAGTTATTTATCAATGCTGAAATTTCTGTATTTGTTGAATGATACTAATCTTTT


>TRINITY_DN105361_c3_g2_i3 from sample A3 / Example unspliced isoform:
TGACTCAGCTTGGCCATGTGAAGAGTTTTGTTTGTCTCTGAAGGATTTGGCCAGGGCTTTCCTGATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGgtatcttctgccatgcttggtcatcaatttcattttaaaa
tttcgtgttagcacccttaatttaatcagatttaagcatatatgcttgtgttatttttggcatgtacatattgttgaaattaggacatgcattttcaggtggtactggtaaccctctcaagcttggactccagaaattcaaccctcatgtctttcaaaagaggcaaagatccatagtttag
GCTGCTGGTTTTCCCGAGC
CAGAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTGGCAAGAAAAAGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTGGAAACCAGAGTTTGATCTTGTCAACGGTCTTACTGATTCCTACAATCTAGACTTTGGCCGAGGTACATTCAGAAAGGAGCCTGAC
TTTTCAGTTGATGATATGATCCTGAATAGAACACTGGTGCTGCAAAGCTAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAATCAGATTTGTCTACATTCTGTTCATTTTCATTGTAGCTCCATTGACTACTATAGATTGTAGTAGGTTACAGTTCAATCATTTCAAA
GAGCAAGATAGCTCGTATCATGTTTGCAACGATTCAACCAGATTTGTCTACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAATTGAAATTGAAATCCTGTACTAATGTCCACTAAAGACCAAAATAGATCAAAGGGAGTAATGATTAACCAACAGTTATTTATCAATG
CTGAAATTTCTGTATTTGTTGAATGATACTAATCTTTT




Intron 4 GTACCTTACT ... TTCCTAAAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A120.591621442
A219.2114316.334
A325.951171241
A416.389710.319
A513.333956
A621.3221425.758
A715.94604787
A816.5330330.760
A917.3842336.789
A1013.383953861



>TRINITY_DN117056_c8_g4_i1 from sample A1 / Example spliced isoform
AAGATGTCACTGGAACATAAAACCGATGGAATTTACTGTTGAGGTTTGATGTTTATCTGTGACATAACGACATGGGCAGCCTTATCCTCATCTCTCGACATCCTCATGTGTGTGCCTGTGGCCAAGAACCAACCTCAAGAAGAAGCAGCATATCTTCTTTTACTACTACAACTGATGGCTTCATTTCATTGCACATCCAA
TCCAGGCACTGCCGAGCTGAATTATAATATTGCACACTAAACGAGGATGATGGCCATGAATGTAATGAACCATGTCAGTGGCATAGCCATTGCAAATACCATCAATATTAACAACAACGTTAAAGCATTTTTTACAGCATCAAAACCTGCATTGCTCACTGCATCTTCGTCCCAATTCAATGGCGTACGTCTGGATAATC
ACCCACAACAGTTTCAGACCAACAAACTATCATACAGGTCCAGGGGACGGGTGGATGTCACTGCCTCGTTATCTTCCGTACCGCCCAAGAAGATATTGATTATGGGTGGCACACGTTTTATTGGCGTTTACTTATCGCGCCTGCTAGTAAAAGCCGGCCATGAGGTAACTTTATTTACCCGTGGTAAATCACCAGTGACA
CAAAAGATTGCAGGGGAGTCAGATCAGGAATATGCAGAATTTTCATCAAAAGTATTGCACATTAAAGGTGATAGGAAGGACTTCGAATTTGTGAAGACCAAACTTTCAGTTTCTGGTTTTGATGTTGTCTATGACATAAATGGAAGAGAGGCGGTTGAAGTAGAACCCATCTTGGATGCCTTGCCAAACCTCGAGCAGTA
CATCTACTGTTCTTCTGCTGGGGTTTATCTCAAGTCTGATATACTTCCACATTTTGAGATTGATGCAGTTGACCCCAAAAGTAGGCACAAGGGAAAGCTTGACACTGAGAATCTGCTTACCGGAAGAGGCATCAATTGGACATCTTTACGGCCAGTCTACATTTATGGACCCCTCAACTACAATCCAGTGGAGGAATGGT
TCTTTCACCGTCTTAAGGCAGGGCGACCAATTCCAATTCCCAATTCTGGCCTTCAAATGACTCAGCTTGGCCATGTGAAGGATTTGGCCAGGGCTTTCCTGATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGGCT
GCTGGTTTTCCCGAGCCAGAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTGGCAAGAAAAAGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTGGAAACCAGAGTTTGATCTTGTCAACGGTCTTACTGATTCCTACAATCTAGACTTTGGCCGAGGTACATT
CAGAAAGGAGCCTGACTTTTCAGTTGATGATATGATCCTGAATAGAACACTGGTGCTGCAAAGCTAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAATCAGATTTGTCTACATTCTGTTCATTTTCATTGTAGCTCCATTGACTACTATAGATTGTAGTAGGTTACA
GTTCAATCATTTCAAAGAGCAAGATAGCTCGTATCATGTTTGCAACGATTCAACCAGATTTGTCTACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAATTGAAATTGAAATCCTGTACTAATGTCCACTAAAGACCAAAATAGATCAAAGGGAGTAATGATTAACCAA
CAGTTATTTATCAATGCTGAAATTTCTGTATTTGTTGAATGATACTAATCTTTTAGCATTTGCCACTGCCCAATTTCAATTTGGCACGACTAGAATTTGACATTCTGGAAAGGATCTTGAATTTTCAACTAGTCATATA


>TRINITY_DN117056_c8_g4_i5 from sample A1 / Example unspliced isoform:
AAGATGTCACTGGAACATAAAACCGATGGAATTTACTGTTGAGGTTTGATGTTTATCTGTGACATAACGACATGGGCAGCCTTATCCTCATCTCTCGACATCCTCATGTGTGTGCCTGTGGCCAAGAACCAACCTCAAGAAGAAGCAGCATATCTTCTTTTACTACTACAACTGATGGCTTCATTTCATTGCACATCCAA
TCCAGGCACTGCCGAGCTGAATTATAATATTGCACACTAAACGAGGATGATGGCCATGAATGTAATGAACCATGTCAGTGGCATAGCCATTGCAAATACCATCAATATTAACAACAACGTTAAAGCATTTTTTACAGCATCAAAACCTGCATTGCTCACTGCATCTTCGTCCCAATTCAATGGCGTACGTCTGGATAATC
ACCCACAACAGTTTCAGACCAACAAACTATCATACAGGTCCAGGGGACGGGTGGATGTCACTGCCTCGTTATCTTCCGTACCGCCCAAGAAGATATTGATTATGGGTGGCACACGTTTTATTGGCGTTTACTTATCGCGCCTGCTAGTAAAAGCCGGCCATGAGGTAACTTTATTTACCCGTGGTAAATCACCAGTGACA
CAAAAGATTGCAGGGGAGTCAGATCAGGAATATGCAGAATTTTCATCAAAAGTATTGCACATTAAAGGTGATAGGAAGGACTTCGAATTTGTGAAGACCAAACTTTCAGTTTCTGGTTTTGATGTTGTCTATGACATAAATGGAAGAGAGGCGGTTGAAGTAGAACCCATCTTGGATGCCTTGCCAAACCTCGAGCAGTA
CATCTACTGTTCTTCTGCTGGGGTTTATCTCAAGTCTGATATACTTCCACATTTTGAGgtaccttactatacatgtgttacttttccaaaatttgtgacctgagatgattgcctacaaagatgtcaatagaattgttcacaatgtgtcttgacaacgattgactaattgccatctttataaatgttcctaaaagATTGAT

GCAGTTGACCCCAAAAGTAGGCACAAGGGAAAGCTTGACACTGAGAATCTGCTTACCGGAAGAGGCATCAATTGGACATCTTTACGGCCAGTCTACATTTATGGACCCCTCAACTACAATCCAGTGGAGGAATGGTTCTTTCACCGTCTTAAGGCAGGGCGACCAATTCCAATTCCCAATTCTGGCCTTCAAATGACTCA
GCTTGGCCATGTGAAGGATTTGGCCAGGGCTTTCCTGATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGGCTGCTGGTTTTCCCGAGCCAGAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTGGCAAGAAAA
AGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTGGAAACCAGAGTTTGATCTTGTCAACGGTCTTACTGATTCCTACAATCTAGACTTTGGCCGAGGTACATTCAGAAAGGAGCCTGACTTTTCAGTTGATGATATGATCCTGAATAGAACACTGGTGCTGCAAAGC
TAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAATCAGATTTGTCTACATTCTGTTCATTTTCATTGTAGCTCCATTGACTACTATAGATTGTAGTAGGTTACAGTTCAATCATTTCAAAGAGCAAGATAGCTCGTATCATGTTTGCAACGATTCAACCAGATTTGTC
TACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAATTGAAATTGAAATCCTGTACTAATGTCCACTAAAGACCAAAATAGATCAAAGGGAGTAATGATTAACCAACAGTTATTTATCAATGCTGAAATTTCTGTATTTGTTGAATGATACTAATCTTTTAGCATTTGCC
ACTGCCCAATTTCAATTTGGCACGACTAGAATTTGACATTCTGGAAAGGATCTTGAATTTTCAACTAGTCATATA




Intron 5 GTCTGCAATT ... GTCTCTGAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A113.1699215
A210.76517.8
A318.3100022.4
A410.146217
A522.7149214.4
A610.03210023.4
A714.27359059.8
A813.95311050.4
A917.17302062.6
A1013.82293047



>TRINITY_DN117056_c8_g4_i1 from sample A1 / Example spliced isoform
AAGATGTCACTGGAACATAAAACCGATGGAATTTACTGTTGAGGTTTGATGTTTATCTGTGACATAACGACATGGGCAGCCTTATCCTCATCTCTCGACATCCTCATGTGTGTGCCTGTGGCCAAGAACCAACCTCAAGAAGAAGCAGCATATCTTCTTTTACTACTACAACTGATGGCTTCATTTCATTGCACATCCAA
TCCAGGCACTGCCGAGCTGAATTATAATATTGCACACTAAACGAGGATGATGGCCATGAATGTAATGAACCATGTCAGTGGCATAGCCATTGCAAATACCATCAATATTAACAACAACGTTAAAGCATTTTTTACAGCATCAAAACCTGCATTGCTCACTGCATCTTCGTCCCAATTCAATGGCGTACGTCTGGATAATC
ACCCACAACAGTTTCAGACCAACAAACTATCATACAGGTCCAGGGGACGGGTGGATGTCACTGCCTCGTTATCTTCCGTACCGCCCAAGAAGATATTGATTATGGGTGGCACACGTTTTATTGGCGTTTACTTATCGCGCCTGCTAGTAAAAGCCGGCCATGAGGTAACTTTATTTACCCGTGGTAAATCACCAGTGACA
CAAAAGATTGCAGGGGAGTCAGATCAGGAATATGCAGAATTTTCATCAAAAGTATTGCACATTAAAGGTGATAGGAAGGACTTCGAATTTGTGAAGACCAAACTTTCAGTTTCTGGTTTTGATGTTGTCTATGACATAAATGGAAGAGAGGCGGTTGAAGTAGAACCCATCTTGGATGCCTTGCCAAACCTCGAGCAGTA
CATCTACTGTTCTTCTGCTGGGGTTTATCTCAAGTCTGATATACTTCCACATTTTGAGATTGATGCAGTTGACCCCAAAAGTAGGCACAAGGGAAAGCTTGACACTGAGAATCTGCTTACCGGAAGAGGCATCAATTGGACATCTTTACGGCCAGTCTACATTTATGGACCCCTCAACTACAATCCAGTGGAGGAATGGT
TCTTTCACCGTCTTAAGGCAGGGCGACCAATTCCAATTCCCAATTCTGGCCTTCAAATGACTCAGCTTGGCCATGTGAAGGATTTGGCCAGGGCTTTCCTGATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGGCT
GCTGGTTTTCCCGAGCCAGAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTGGCAAGAAAAAGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTGGAAACCAGAGTTTGATCTTGTCAACGGTCTTACTGATTCCTACAATCTAGACTTTGGCCGAGGTACATT
CAGAAAGGAGCCTGACTTTTCAGTTGATGATATGATCCTGAATAGAACACTGGTGCTGCAAAGCTAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAATCAGATTTGTCTACATTCTGTTCATTTTCATTGTAGCTCCATTGACTACTATAGATTGTAGTAGGTTACA
GTTCAATCATTTCAAAGAGCAAGATAGCTCGTATCATGTTTGCAACGATTCAACCAGATTTGTCTACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAATTGAAATTGAAATCCTGTACTAATGTCCACTAAAGACCAAAATAGATCAAAGGGAGTAATGATTAACCAA
CAGTTATTTATCAATGCTGAAATTTCTGTATTTGTTGAATGATACTAATCTTTTAGCATTTGCCACTGCCCAATTTCAATTTGGCACGACTAGAATTTGACATTCTGGAAAGGATCTTGAATTTTCAACTAGTCATATA


>TRINITY_DN117056_c8_g4_i4 from sample A1 / Example unspliced isoform:
GACTCAGCTTGGCCATGTGAAGgtctgcaattcattattgaatttcttttcctttttagatagagtctaaacagagtaactatctgaaactccgagagtctgaagtatgagagattttactagaatatgaattgtctggactctatttgtgaaaagtagagttttgtttgtctctgaagGATTTGGCCAGGGCTTTCCTG
ATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGGTATCTTCTGCCATGCTTGGTCATCAATTTCATTTTAAAATTTCGTGTTAGCACCCTTAATTTAATCAGATTTAAGCATATATGCTTGTGTTATTTTTGGCATG
TACATATTGTTGAAATTAGGACCTGCATTTTCAGGTGGTACTGGTAACCCTCTCAAGCTTGGACTCCAGAAATTCAACCCTCATGTCTTTCAAAAGAGGCAAAGATCCATAGTTTAGGTGACCGAATCGTTTGTGCCAAAGCACAAATTGTCATTGCTAGTCAAGAAGGCTTCCTGCTTAATGGGATGTGCAAGCAATCT
GCAAAGTCCACCCTCTCTGACTCCTCTAGCCAAGACTCAACTAGGATCAG




Intron 6 GTAAGGTCTT ... TTTTGGACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A127.78117045
A222.39156045
A314.12146124
A416.76144429
A522.2270020
A622.12243069
A719.85550137
A821.03323086
A917.554841103
A1019.634750116



>TRINITY_DN36831_c0_g1_i2 from sample A7 / Example spliced isoform
CTAAAAATATGGTAAGGAATCACACACCTATACTTGTGAATCCCTCTTACTTTAAATCAAAGTAGCATGAAGATGTCACTGGAACATAAAACCGATGGAATTTACTGTTGAGGTTTGATGTTTATCTGTGACATAACGACATGGGCAGCCTTATCCTCATCTCTCGACATCCTCATGTGTGTGCCTGTGGCCAAGAACCA
ACCTCAAGAAGAAGCAGCATATCTTCTTTTACTACTACAACTGATGGCTTCATTTCATTGCACATCCAATCCAGGCACTGCCGAGCTGAATTATAATATTGCACACTAAACGAGGATGATGGCCATGAATGTAATGAACCATGTCAGTGGCATAGCCATTGCAAATACCATCAATATTAACAACAACGTTAAAGCATTTT
TTACAGCATCAAAACCTGCATTGCTCACTGCATCTTCGTCCCAATTCAATGGCGTACGTCTGGATAATCACCCACAACAGTTTCAGACCAACAAACTATCATACAGGTCCAGGGGACGGGTGGATGTCACTGCCTCGTTATCTTCCGTACCGCCCAAGAAGATATTGATTATGGGTGGCACACGTTTTATTGGCGTTTAC
TTATCGCGCCTGCTAGTAAAAGCCGGCCATGAGGTAACTTTATTTACCCGTGGTAAATCACCAGTGACACAAAAGATTGCAGGGGAGTCAGATCAGGAATATGCAGAATTTTCATCAAAAGTATTGCACATTAAAGGTGATAGGAAGGACTTCGAATTTGTGAAGACCAAACTTTCAGTTTCTGGTTTTGATGTTGTCTA
TGACATAAATGGAAGAGAGGCGGTTGAAGTAGAACCCATCTTGGATGCCTTGCCAAACCTCGAGCAGTACATCTACTGTTCTTCTGCTGGGGTTTATCTCAAGTCTGATATACTTCCACATTTTGAGATTGATGCAGTTGACCCCAAAAGTAGGCACAAGGGAAAGCTTGACACTGAGAATCTGCTTACCGGAAGAGGCA
TCAATTGGACATCTTTACGGCCAGTCTACATTTATGGACCCCTCAACTACAATCCAGTGGAGGAATGGTTCTTTCACCGTCTTAAGGCAGGGCGACCAATTCCAATTCCCAATTCTGGCCTTCAAATGACTCAGCTTGGCCATGTGAAGGATTTGGCCAGGGCTTTCCTGATGGTTCTTGGCAATGAGAAAGCGAGTAAG
CAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGGCTGCTGGTTTTCCCGAGCCAGAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTGGCAAGAAAAAGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTG
GAAACCAGAGTTTGATCTTGTCAACGGTCTTACTGATTCCTACAATCTAGACTTTGGCCGAGGTACATTCAGAAAGGAGCCTGACTTTTCAGTTGATGATATGATCCTGAATAGAACACTGGTGCTGCAAAGCTAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAAT
CAGATTTGTCTACATTCTGTTCATTTTCATTGTAGCTCCATTGACTACTATAGATTGTAGTAGGTTACAGTTCAATCATTTCAAAGAGCAAGATAGCTCGTATCATGTTTGCAACGATTCAACCAGATTTGTCTACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAAT
TGAAATTGAAATCCTGTACTAATGTCCACTAAAGACCAAAATAGATCAAAGGGAGTAATGATTAACCAACAGTTATTTATCAATGCTGAAATTTCTGTATTTGTTGAATGATACTAATCTTTTAGCATTTGCCACTGCCCAATTTCAATTTGGCACGACT


>TRINITY_DN36831_c0_g1_i3 from sample A7 / Example unspliced isoform:
GATGTTGTCTATGACATAAATGgtaaggtcttcctctaaccaggctgtttatattcattaaggattgaaaatagatttcattgtgagcttcatcttaattcccatgttagtaataagtactagtttagtattttggtcaaaacttaaacatgttgaactgctgaaattgcatgaaactgggtaagtgtgcagggtatttc
taagttgcctatttctgtactgaggcacaatctcatattttaacttctattccttgtcttcagagagtgttcaaagattgttataattttctgtgcaactcttgcatccaattgccttaaaatgtgttttccatattccattttaagctatttgtgtactgaagcacaagctcagattttaacttctattcctcatcttc
agagagtgttcaaagattgttctgattttctgtgcgtctcttgcgtcgatttggcttaaaatgtgttttccatgttccattttcagctctctcaaatttgtgcagaatattcccaacaatcttgtactatttgctcgtgacacacaatctatagaaatagatatttgagtttcattcagcactttgattgtcactagttt
ggatattgcccaccctgattcattcaattagattcaagtgaagagaaatttccacttagcagatcttctgagttttgttttggacag
GAAGAGAGGCGGTTGAAGTAGAACCCATCTTGGATGCCTTGCCAAACCTCGAGCAGTACATCTACTGTTCTTCTGCTGGGGTTTATCTCAAGTCTGATATACTTCCACATTTT
GAGATTGATGCAGTTGACCCCAAAAGTAGGCACAAGGGAAAGCTTGACACTGAGAATCTGCTTACCGGAAGAGGCATCAATTGGACATCTTTACGGCCAGTCTACATTTATGGACCCCTCAACTACAATCCAGTGGAGGAATGGTTCTTTCACCGTCTTAAGGCAGGGCGACCAATTCCAATTCCCAATTCTGGCCTTCA
AATGACTCAGCTTGGCCATGTGAAGGATTTGGCCAGGGCTTTCCTGATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCATGTGCAAAGGCTGCTGGTTTTCCCGAGCCAGAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTG
GCAAGAAAAAGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTGGAAACCAGAGTTTGATCTTGTCAACGGTCTTACTGATTCCTACAATCTAGACTTTGGCCGAGGTACATTCAGAAAGGAGCCTGACTTTTCAGTTGATGATATGATCCTGAATAGAACACTGGTG
CTGCAAAGCTAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAATCAGATTTGTCTACATTCTGTTCATTTTCATTGTAGCTCCATTGACTACTATAGATTGTAGTAGGTTACAGTTCAATCATTTCAAAGAGCAAGATAGCTCGTATCATGTTTGCAACGATTCAACC
AGATTTGTCTACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAATTGAAATTGAAATCCTGTACTAATGTCCACTAAAGACCAAAATAGATCAAAGGGAGTAATGATTAACCAACAGTTATTTATCAATGCTGAAATTTCTGTATTTGTTGAATGATACTAATCTTTTA
GCATTTGCCACTGCCCAATTTCAATTTGGCACGACT




Intron 7 GTACATCCAT ... TTGACTGTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A1121321620
A214.531473713
A317.851223617
A420.151073420
A517.3957168
A612.812114418
A714.6750311162
A814.23025545
A915.5343810457
A1014.884497879



>TRINITY_DN100615_c0_g1_i4 from sample A4 / Example spliced isoform
CAAAGTAGCATGAAGATGTCACTGGAACATAAAACCGATGGAATTTACTGTTGAGGTTTGATGTTTATCTGTGACATAACGACATGGGCAGCCTTATCCTCATCTCTCGACATCCTCATGTGTGTGCCTGTGGCCAAGAACCAACCTCAAGAAGAAGCAGCATATCTTCTTTTACTACTACAACTGATGGCTTCATTTCA
TTGCACATCCAATCCAGGCACTGCCGAGCTGAATTATAATATTGCACACTAAACGAGGATGATGGCCATGAATGTAATGAACCATGTCAGTGGCATAGCCATTGCAAATACCATCAATATTAACAACAACGTTAAAGCATTTTTTACAGCATCAAAACCTGCATTGCTCACTGCATCTTCGTCCCAATTCAATGGCGTAC
GTCTGGATAATCACCCACAACAGTTTCAGACCAACAAACTATCATACAGGTCCAGGGGACGGGTGGATGTCACTGCCTCGTTATCTTCCGTACCGCCCAAGAAGATATTGATTATGGGTGGCACACGTTTTATTGGCGTTTACTTATCGCGCCTGCTAGTAAAAGCCGGCCATGAGGTAACTTTATTTACCCGTGGTAAA
TCACCAGTGACACAAAAGATTGCAGGGGAGTCAGATCAGGAATATGCAGAATTTTCATCAAAAGTATTGCACATTAAAGGTGATAGGAAGGACTTCGAATTTGTGAAGACCAAACTTTCAGTTTCTGGTTTTGATGTTGTCTATGACATAAATGGAAGAGAGGCGGTTGAAGTAGAACCCATCTTGGATGCCTTGCCAAA
CCTCGAGCAGTACATCTACTGTTCTTCTGCTGGGGTTTATCTCAAGTCTGATATACTTCCACATTTTGAGATTGATGCAGTTGACCCCAAAAGTAGGCACAAGGGAAAGCTTGACACTGAGAATCTGCTTACCGGAAGAGGCATCAATTGGACATCTTTACGGCCAGTCTACATTTATGGACCCCTCAACTACAATCCAG
TGGAGGAATGGTTCTTTCACCGTCTTAAGGCAGGGCGACCAATTCCAATTCCCAATTCTGGCCTTCAAATGACTCAGCTTGGCCATGTGAAGGATTTGGCCAGGGCTTTCCTGATGGTTCTTGGCAATGAGAAAGCGAGTAAGCAAGTCTACAATATATCCGGAGCAAAATATGTCACATTTTCGGGTTTAGCAAAAGCA
TGTGCAAAGGCTGCTGGTTTTCCCGAGCCAGAGATTATTCATTTCAACCCAAAAGAGTTTGATTTTGGCAAGAAAAAGTCCTTTCCCCTTCGAGATCAGCATTTTTTTACATCCATTGAGAAAGCTCAAACAGATCTTGGCTGGAAACCAGAGTTTGATCTTGTCAACGGTCTTACTGATTCCTACAATCTAGACTTTGG
CCGAGGTACATTCAGAAAGGAGCCTGACTTTTCAGTTGATGATATGATCCTGAATAGAACACTGGTGCTGCAAAGCTAGTCAGCTTACAGTTCAAGCCTGGCAAAGAGCAAGATAGCTCCTATCATGTTTGCAACGATTCAATCAGATTTGTCTACATTCTGTTCATTTTCATTGTAGCTCCATTGACTACTATAGATTG
TAGTAGGTTACAGTTCAATCATTTCAAAGAGCAAGATAGCTCGTATCATGTTTGCAACGATTCAACCAGATTTGTCTACATTCTGTTCATTTAATTCATTGTAGCTCCATTGACTACTATAGATTGAAGTAGCTGGGACCAATTGAAATTGAAATCCTGTACTAATGTCCACTAAAGACCAAAATAGATCAAAGGGAGTA
ATGATTAACCAACAGTTATTTATCAATGCTGAAATTTCTGTATTTGTTGAATGATACTAATCTTTTAGCATGTGCCACTGCCC


>TRINITY_DN100615_c0_g1_i2 from sample A4 / Example unspliced isoform:
CAAAGTAGCATGAAGATGTCACTGGAACATAAAACCGATGGAATTTACTGTTGAGGTTTGATGTTTATCTGTGACATAACGACATGGGCAGCCTTATCCTCATCTCTCGACATCCTCATGTGTGTGCCTGTGGCCAAGAACCAACCTCAAGAAGAAGCAGCATATCTTCTTTTACTACTACAACTGATGGCTTCATTTCA
TTGCACATCCAATCCAGGCACTGCCGAGCTGAATTATAATATTGCACACTAAACGAGGATGATGGCCATGAATGTAATGAACCATGTCAGTGGCATAGCCATTGCAAATACCATCAATATTAACAACAACGTTAAAGCATTTTTTACAGCATCAAAACCTGCATTGCTCACTGCATCTTCGTCCCAATTCAATGGCGTAC
GTCTGGATAATCACCCACAACAGTTTCAGACCAACAAACTATCATACAGGTCCAGGGGACGGGTGGATGTCACTGCCTCGTTATCTTCCGTACCGCCCAAGAAGATATTGATTATGGGTGGCACACGTTTTATTGGCGTTTACTTATCGCGCCTGCTAGTAAAAGCCGGCCATGAGGTAACTTTATTTACCCGTGGTAAA
TCACCAGTGACACAAAAGATTGCAGGGGAGTCAGATCAGGAATATGCAGAATTTTCATCAAAAGTATTGCACATTAAAGGTGATAGGAAGGACTTCGAATTTGTGAAGACCAAACTTTCAGTTTCTGGTTTTGATGTTGTCTATGACATAAATGGAAGAGAGGCGGTTGAAGTAGAACCCATCTTGGATGCCTTGCCAAA
CCTCGAGCAgtacatccatttcccaacctttcatttctgtagttttgcttgttgtttgcatccaaaattattgtgtgatgtctcattttgtccaatattgttgactgtagGTACATCTACTGTTCTTCTGCTGGGGTTTATCTCAAGTCTGATATACTTCCACATTTTGAGATTGATGCAGTTGACCCCAAAAGTAGGCA
CAAGGGAAAGCTTGACACTGAGAATCTGCTTACCGGAAGAGGCATCAATTGGACATCTTTACGGCCAGTCTACATTTATGGACCCCTCAACTACAATCCAGTGGAGGAATGGTTCTTTCACCGTCTTAAGGCAGGGCGACCAATTCCAATTCCCAATTCTGGCCTTCAAATGACTCAGCTTGGCCATGTGAAGGTCTGCA
ATTCATTATTGAATTTCTTTTCCTTTTTAGATAGAGTCTAAACAGAGTAACTATCTGAAACTCCGAGAGTCTGAAGTATGAGA