sp|Q0WPU1|MYO15_ARATH ----> Myosin-15
Intron 1 GTGTGACTCT ... CCTCAGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 8 | 22 | 18 |
| A2 | 70.97 | 9 | 23 | 21 |
| A3 | 64.71 | 9 | 22 | 11 |
| A4 | 72.31 | 9 | 20 | 27 |
| A5 | 53.33 | 7 | 9 | 7 |
| A6 | 100 | 0 | 2 | 4 |
| A7 | 100 | 0 | 5 | 4 |
| A8 | 100 | 0 | 1 | 0 |
| A9 | 80 | 1 | 3 | 5 |
| A10 | 66.67 | 1 | 4 | 0 |
>TRINITY_DN112705_c1_g3_i5 from sample A3 / Example spliced isoformGCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAACTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCG
AGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTGTTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGG
ATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGATTGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAA
AGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTGGGGACTTCACCAAACCGGCAGCCAGTACAATGGCTACTGAAAAGAACATTACTATAGGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAA
TTATTAATGGCCAGATTAAAGTTGTTACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCAGATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGT
AGTATTTTGATTGCTGTAAACCCTTTTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCCATTTGGGCAGTTAAGTCCTCATGTTTTTGCAGTTGCTGATGCTTCTTATAGGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAAC
AGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAGTTCTTGAATCAAATCCACTTCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATAT
CTGGAGCTGCAATTAGGACCTATCTTTTAGAGAGGTCCCGAGTCGTGCAGATAACAGATCCTGAAAGAAATTACCACTGTTTTTATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGG
GAATATGCTAATACTCGAAGGGCCATGGATATAGTAGGCATAAGTCTTGATGAACAGGAAGCTATTTTTCGGACACTGGCTGGAATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACCAGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATCTGCCA
CCAGTCGTGATGCTTTGGCAAAAACATTGTACTCTCGATTATTTGATTGGTTGGTGGATAAAATCAACAAGTCTATAGGACAAGATCAAGATTCTAAAGCTCAAATAGGAGTGTTGGACATCTATGGTTTTGAAAGTTTTCAGAACAACAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTTCAACAACAT
TTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAATTCATAGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCTTTTTAACCA
CTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGGTGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAAAAACAG
>TRINITY_DN112705_c1_g3_i3 from sample A3 / Example unspliced isoform:GCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAACTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCG
AGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTGTTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGG
ATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGATTGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAA
AGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTGGGGACTTCACCAAACCGGCAGCCAGTACAATGGCTACTGAAAAGAACATTACTATAGGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAA
TTATTAATGGCCAGATTAAAGTTGTTACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCAGATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGT
AGTATTTTGATTGCTGTAAACCCTTTTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCCATTTGGGCAGTTAAGTCCTCATGTTTTTGCAGTTGCTGATGCTTCTTATAGGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAAC
AGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAGTTCTTGAATCAAATCCACTTCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATAT
CTGGAGCTGCAATTAGGACCTATCTTTTAGAGAGGTCCCGAGTCGTGCAGATAACAGATCCTGAAAGAAATTACCACTGTTTTTATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGG
GAATATGCTAATACTCGAAGGGCCATGGATATAGTAGGCATAAGTCTTGATGAACAGGAAGCTATTTTTCGGACACTGGCTGGAATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACCAGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATgtgtga
ctctaaaacactgcaagaggcattgtgtacacgtgtgattgtaactcgtgaaggaaatataattaaagctcttgatcctcaggcagCTGCCACCAGTCGTGATGCTTTGGCAAAAACATTGTACTCTCGATTATTTGATTGGTTGGTGGATAAAATCAACAAGTCTATAGGACAAGATCAAGATTCTAAAGCTCAAATAG
GAGTGTTGGACATCTATGGTTTTGAAAGTTTTCAGAACAACAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTTCAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAATTCATAGACAATCAAGATGTTCTAGATTTAATTGAA
AAGAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCTTTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGGTGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAA
AAACAG
Intron 2 GTAAAGCTTT ... TTATCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.17 | 15 | 5 | 12 |
| A2 | 26.32 | 7 | 2 | 3 |
| A3 | 23.53 | 13 | 3 | 5 |
| A4 | 20 | 10 | 4 | 1 |
| A5 | 73.33 | 2 | 8 | 3 |
| A6 | 60 | 1 | 2 | 1 |
| A7 | 33.33 | 5 | 3 | 2 |
| A8 | 0 | 2 | 0 | 0 |
| A9 | 0 | 3 | 0 | 0 |
| A10 | 0 | 1 | 0 | 0 |
>TRINITY_DN134682_c0_g1_i3 from sample A1 / Example spliced isoformAGAAGATAAAGTTTGTGCTAGGGTGGCATATATCATTGCTTGACTTCACTAATTTGTTAATATATTTATTTGTGGTCAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTTCAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAA
TTCATAGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCTTTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGG
TGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAAAAACAGGGACTACATTGTTGTGGAACACAACAATTTATTGTCATCCTCAAAGTGTGCTTTTGTTGCCAGTCTCTTTCCTGAACTAACTTCTGATTCTTCAAAGTCTTCGTTCAAGTTTTCGTCCGTTGCAACACGATTCAAGCAACAACTGCAAGCTTTGCTGG
AGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATGGAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGGGAGTTCTGGAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTCATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCA
CCTGAGATGATTGATGGAAAATATGATGAGAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGATGGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGC
TCAGAAAGAATTTAATAGAAAGCGTAGGGCTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTCAAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCC
GTGCATATTTTGTTCGTCGAGAGTATCATCTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCAACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACA
GGGGCTCTGCGTGAGGCAAAGAACAAACTTGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAGGAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAA
TGTGGTTCTCCGGATTAAACTTGAACTTGCCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGGTAAAATACTGCAGATAGTGATCAGATATGCCGAAGTA
>TRINITY_DN134682_c0_g1_i25 from sample A1 / Example unspliced isoform:TATGAATTCTCATATTTATTGATGCATTACTGATATTTGAACATTTGCATGTTTGCTTTTGGTTTGATAATCATCATCCAGGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAACAGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTG
CTATAGATAATAGGACAGTGGAGCAACAAGTTCTTGAATCAAATCCACTCCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATATCTGGAGCTGCAATTAGGACCTATCTTTTAGAGAGGTCCCGAGTCGTGCAGATA
ACAGATCCTGAAAGAAATTACCACTGTTTTTATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGGGAATATGCTAATACTCGAAGGGCCATGGATATAGTAGGCATAAGTCTTGATGA
ACAGGAAGCTATTTTTCGGACACTGGCTGGAATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACCAGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATGTGTGACTCTAAAACACTGCAAGAGGCATTGTGTACACGTGTGATTGTAACTCGTGAAG
GAAATATAATTAAAGCTCTTGATCCTCAGGCAGCTGCCACCAGTCGTGATGCTTTGGCAAAAACATTGTACTCTCGATTATTTGATTGGTTGGTGGATAAAATCAACAAGTCTATAGGACAAGATCAAGATTCTAAAGCTCAAATAGGAGTGTTGGACATCTATGGTTTTGAAAGTTTTCAGAACAACAGTTTTGAGCAG
TTTTGTATTAACTTTGCCAATGAGAAGCTTCAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAATTCATAGACAATCAAGATGTTCTAGATTTAATTGAAAAGgtaaagcttttattgtcttgttgaatttttttcaagaaaaaggcagggtc
ccttgttactctgagagggtaaggggaattcatgacttgatataaagagaaggaatgatcaaagatgatagatattgtaaacagttaatcttgttcttagatagatatttgcactaaagtttctaaagaacaaacaaggctgaaattctcaagcatttccagagaccattgagaggggggtggaccaaagatctggaatc
acccaataacactactccacaatgcaaccttctctgcaaaatgtctacatctgtagtctgaacaaactcccaaatggggtgcgtcaccatttctagcctgaggcaggaagggcaaagcctatcggagagactgctatttagtaactgtgccttgagagtaaggccctagtaaatcactacccacacaaacacttggagtg
tgcagctgacccaaacctaccacacactatgcaatctcctgatccaccatctctctgtgttagtaaacacccatcgtgtattaagaacagggttgagctcatgacactgatgaagaaaagaatataacctccaagaatcatactggaccagggagcgcctgaagctcccctcccaatcatgccaaaagggattagggatg
tagatattcatgttcaacaggtccttctactgaacaagattgttaatctccataatagtatgctgatatgctgaagatggcaaactcatgggcagtagattgctggtccttcctaaagctagcaccgacattggtgatccctccaataaaaaaatctttttgttacttagtcgctgtccgtgaaagtcccccacatttac
tctgcatgttccatatcgaaatcagtcttctgtccaaatcccatcctggtccactacctgacattcgccagccaaccaagctggctaccttccttcatgctgcccagatacttctaacaataaaggatcctcatacctggaggctgtgaggagctaaaattatgtcacatgattcaaaagatcccctggtcctctcaata
tattcacagctgacaaaattctcggaaaaggctccacaatttttttggggaaattgtgttattcttaatttatttgccatgtttttggtgagtttttgttgagtctaaatgtattcttactcaggcattgctgacttgttttcagagatgaattcagctactttggttccaagtgtgcattagtccattttctttgttcg
agtagtagatctctctatatgtagtatcttccatatccatggatagttttactgtttacttactgtagtttgtttcacgccagtgttgtacttccttgcaaaaatatattttgggattttgtgttaaatttggatgatctgcgataactgataagtgatgttgtttataaaggtattttgcttatttgtcactttgaagt
agacgggttagtaatttatagaattgccttttggtacacctgattttcttcttttctagtggaaacttgtatctgtgtattaggatattgtcttcttcattattgtatagtatgatttggtctatcatggcactgtctattatttcaatatgcatttaattactttctttttgaatttctggtgtaccatttgccttggc
tattttcttgtgtgcattcttcttacacttaaattggcctaaaatgttatctgcagAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCTTTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACA
CTTTCTCATTATGCTGGTGAGGTATGCTTGGCTGCGGGGATTGCATGCTTGCGAGTCTGAGTGTACTGTCATATCATGGATCTTGTTTTTGAATATATTAC
Intron 3 GTTAAGTCCT ... CTTCTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.85 | 24 | 17 | 39 |
| A2 | 68.35 | 10 | 21 | 22.2 |
| A3 | 75.51 | 6 | 18 | 19 |
| A4 | 55.88 | 15 | 16 | 22 |
| A5 | 73.68 | 5 | 11 | 17 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 100 | 0 | 1 | 1 |
| A8 | 100 | 0 | 0 | 3 |
| A9 | 100 | 0 | 3 | 3 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN134682_c0_g1_i5 from sample A1 / Example spliced isoformCTCTTCCAAATTTGGCGCCGAAAAGTTGGGACAAAACGGCGGCCTCGTGAATTTTCTACCCACACGCAGTTAATATTAATATTATTATAATTTTGTTTCGTATAAGGCTCTCAAAGGGCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAA
CTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCGAGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTG
TTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGGATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGAT
TGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAAAGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTG
GGGACTTCACCAAACCGGCAGCCAGTACAATGGCTACTGAAAAGAACATTACTATAGGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAATTATTAATGGCCAGATTAAAGTTGTTACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCA
GATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGTAGTATTTTGATTGCTGTAAACCCTTTTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCC
ATTTGGGCAGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAACAGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAGTTCTTGAAGTAAGATTCTGTCAGCTTTCTCAGTGTG
>TRINITY_DN134682_c0_g1_i22 from sample A1 / Example unspliced isoform:CTCTTCCAAATTTGGCGCCGAAAAGTTGGGACAAAACGGCGGCCTCGTGAATTTTCTACCCACACGCAGTTAATATTAATATTATTATAATTTTGTTTCGTATAAGGCTCTCAAAGGGCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAA
CTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCGAGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTG
TTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGGATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGAT
TGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAAAGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTG
GGGACTTCACCAAACCGGCAGCCAGTACAATGGCTACTGAAAAGAACATTACTATAGGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAATTATTAATGGCCAGATTAAAGTTGTTACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCA
GATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGTAGTATTTTGATTGCTGTAAACCCTTTTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCC
ATTTGGGCAgttaagtcctcatgtttttgcagttgctgatgcttcttatagGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAACAGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAG
TTCTTGAATCAAATCCACTCCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATATCTGGAGCTGCAATTAGGACCTATCTTTTAGAGAGGTCCCGAGTCGTGCAGATAACAGATCCTGAAAGAAATTACCACTGTTTT
TATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGGGAATATGCTAATACTCGAAGGGCCATGGATATAGTAGGCATAAGTCTTGATGAACAGGAAGCTATTTTTCGGACACTGGCTGG
AATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACCAGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATGTGTGACTCTAAAACACTGCAAGAGGCATTGTGTACACGTGTGATTGTAACTCGTGAAGGAAATATAATTAAAGCTCTTGATCCTCAGG
CAGCTGCCACCAGTCGTGATGCTTTGGCAAAAACATTGTACTCTCGATTATTTGATTGGTTGGTGGATAAAATCAACAAGTCTATAGGACAAGATCAAGATTCTAAAGCTCAAATAGGAGTGTTGGACATCTATGGTTTTGAAAGTTTTCAGAACAACAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTT
CAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAATTCATAGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCT
TTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGGTGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAAAAACAGGGACTACATTGTTGTGGAACACAACAATTTATTGTCATCCTCAAAGTGTGCTTTTGTTGCCAGTCTCTTTCCTGAAC
TAACTTCTGATTCTTCAAAGTCTTCGTTCAAGTTTTCGTCCGTTGCAACACGATTCAAGCAACAACTGCAAGCTTTGCTGGAGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATGGAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGGGAGTTCTG
GAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTCATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCACCTGAGATGATTGATGGAAAATATGATGAGAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGAT
GGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGCTCAGAAAGAATTTAATAGAAAGCGTAGGGCTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTC
AAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCCGTGCATATTTTGTTCGTCGAGAGTATCATCTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCA
ACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACAGGGGCTCTGCGTGAGGCAAAGAACAAACTTGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAG
GAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAATGTGGTTCTCCGGATTAAACTTGAACTTGCCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGATTTCAGTGGAAT
CACTTGAAAAGAAAGTTGCAGAGACACACACAGAATTGGTGATATCTCAAAATGAAAGAGATGGAAGTCTGAGAAAAGTGAAAGAAGTTGAATCAAATGTTTCTCAACTTCAGGAGACACTGCATAGGCTGGAAGAAAAACTGTCAAACTTGGAGTCTGAGAATCAAGTTCTACGACGGCAATCTTTAGTTGTCTCTCCA
ACTAATGGCTTTACCAATAATGCAAAGCCTATGAATTTGCAGGTTTGATTTATTTTTGGATTTATCTTAGTGCATTTCTGTTCATTTTGTTTTGTATCAATGTATGGAGAGGATATCAAAGGAAACATCCGGGGGCAGTTTGAATGGGAACAGTTATGTTCGGTATTCTTTTGCTCAGGAAGTTTAAATCGTGTATCTAG
ATTCTAAAGAATCTAAACATATTTGTATCCTATATTTGCTTTACATAACATTTTATATTTTGACATAAGAAAGAAGGCCTACATATTGAAGCAAATAATTTTTGACTAATATTTGTACGTCTAGATTCCTTGTGTTATTTTCCATGATTCGTTTGTACTTTATAGATTTGACGTGATTTTATGAGATCTTGAGCTCAGTT
ATTAGGTGTTCTATCATACAGAAGACTCCAGAAATTCACCAGGCTTACGATGGGGGTCAGAAATCTATGTTTGATTCACCTATTGATTCTCAACAAATCATCAAAATAAGGAGTAATGCTCTGTCCGACACAAAGCAATCAAGGTTTGCCATGGAGAGGCAACAGGAAAACCAACGAGCTCTTGTTAAGTGTGTAATACA
AGATGTAGGTTTCAGCAACGATAAACCTGTTGCGGCCTGTATCATATATAAATGCCTTCTTCACTGGCATGCTTTTGAAGCTGAGATAACACCTGTATTTGAGCTCATTATTCAAACTATTGGCTTAATTATCGAGGAAAAGGATGATAATGATGCTTTGTCATATTGGCTTTCCAATACTTCAACATTGATTTTCTTAC
TTCAACGCAACTTGAAACCAAGTGGGCTTACAACAACTCCTCAACGTCGTTACCCTGGATCAGTCACTCTTATTGGGAGGATGACACAAGGGTTCAAATCACCATCAAATCATGGCTCGTTGGGAACGGGTGGAACCTTTGGTGCACAGGAGGGCATACAACAAGTGGAAGCAAAGTATCCAGCTATACTATTCAAACAA
CAAGTCACTACTTATCTAGAAAAAATATATGGGATAGTCCGAGAGAATGTGAAGAAAGATATAGGACCACTACTTAGCCTTTGTATTCAAGCACCAAGAATGTCACGCACAAGTATGAGCAAAGGATCACGTTCACCAAACATGATTGGAGCTACCCAACAAGTTTTGAGCAGTCATTGGCATAGTATTATCAAAATCCT
GAACTCTTTATTGAGTAAACTCCATGCAAATCATGTACCTCCGCTTTTAGTTTGTAAACTCTTTACTCAAGTTTTTTCATTCATCAATGTGCAACTTTTCAACAGCCTGTTGTTACGACGGGAGTGCTGTTCATTTAGCAATGGTGAATATATAAAATCTGGAATTGCAGAACTGGAACGGTGGATATGTGAGGCTTCAG
AACAATATGTAGGGACATCCTGGGATGAATTAAGGTACATCAGGCAAGCTGTTGGATTCCTGGTCATACATCAGAAAGCAAAGAAGACTTTAGATGAAATTATGCAGGATATTTGCCCAGTGCTAACTGTTCAACAGCTTTATCGGATAAGCACCATGTATTGGGATGATAAATATGGCACACAGAGTGTATCCCGTGAG
GTTTTTGGAAGCATGAAGCTGATGATGACAAAGAGTCCTCAAAATGCCTCGACCAATACATTTCTGCTGGATGATGATACAAGCATACCCTTTTCTGTTGATGAATTAACAAAGGGTATGGCAGATGTTGATCTCTCAGATGTGGAGACCCCACCCCTACTCCGTGACATCTCAGCTTTTCAATTTTTGCAACAGAACGG
ATAGCAATGAGAAAGCTTCTTAGCTATCATTCTGTACCTTTCCTAAATTTTTGGATGAGAACTTGCTGCATTATGTTGATATATTAAACATTCTTATACAGGAGCAGTATATTGATCAACCTATCAAATTAATTTGTGGATCATCTGGCATCTGTCCTTTGTTTTTTGTGATATCCCTGCAATGAGTTAAGCAGGTCTAT
GGGTGCTGTCATTTTCTTCTCAGTCAATGGAAGAAAGTATTCTTCTCCTCAGTTTTCTTCTGGAAGCCTATGCCCAGTTTGCCATACAGTTCGATACAGTTCTCTATGAGTGGGGAATGGGGAAACACAGTTTGTAACAATCATGGCAGTGAATGCCTTGCATCAGATAGTGCCAATATATTATTAATTGCCA
Intron 4 GTATGACTAT ... GTTTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.82 | 15 | 6 | 8 |
| A2 | 24.44 | 17 | 5 | 6 |
| A3 | 20.75 | 21 | 7 | 4 |
| A4 | 15.56 | 19 | 5 | 2 |
| A5 | 30.43 | 8 | 7 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 25 | 9 | 1 | 5 |
| A8 | 27.27 | 4 | 0 | 3 |
| A9 | 38.46 | 4 | 2 | 3 |
| A10 | 9.09 | 5 | 0 | 1 |
>TRINITY_DN134682_c0_g1_i3 from sample A1 / Example spliced isoformAGAAGATAAAGTTTGTGCTAGGGTGGCATATATCATTGCTTGACTTCACTAATTTGTTAATATATTTATTTGTGGTCAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTTCAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAA
TTCATAGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCTTTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGG
TGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAAAAACAGGGACTACATTGTTGTGGAACACAACAATTTATTGTCATCCTCAAAGTGTGCTTTTGTTGCCAGTCTCTTTCCTGAACTAACTTCTGATTCTTCAAAGTCTTCGTTCAAGTTTTCGTCCGTTGCAACACGATTCAAGCAACAACTGCAAGCTTTGCTGG
AGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATGGAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGGGAGTTCTGGAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTCATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCA
CCTGAGATGATTGATGGAAAATATGATGAGAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGATGGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGC
TCAGAAAGAATTTAATAGAAAGCGTAGGGCTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTCAAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCC
GTGCATATTTTGTTCGTCGAGAGTATCATCTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCAACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACA
GGGGCTCTGCGTGAGGCAAAGAACAAACTTGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAGGAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAA
TGTGGTTCTCCGGATTAAACTTGAACTTGCCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGGTAAAATACTGCAGATAGTGATCAGATATGCCGAAGTA
>TRINITY_DN134682_c0_g1_i24 from sample A1 / Example unspliced isoform:GTTTGATTTTATCATTTTTCTATGAAATTTCCATCTGTCCTTATTTTGGTGAATGAAACTGCACCACTCTGGTCTTCTTAACTAATATTGTCATTTGTTTCATTTTGTCAGCAACAACTGCAAGCTTTGCTGGAGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATG
GAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGGTCAGATTTCTCATGAAACTGAATCATATATATATCGAATTTTGTCTAGCTATGATCTTTTCATAGATTGATTGTTTTCAGTTGTGGATTGCATTTTTCTTGATTGTTGTCAGGCATGTTGCATGGATATGTGCCGGAAACATTATATACCTTCAGT
TGATGCTCTTCTGCTGTCACTTATGTAGTCTTTCTAATGCATTCAGTGATTCACAAAGAGAAATGGCATCCTAAAGCCATTCATGCCGAGTTGTGTTGCCTTAGACTTGTTTTCAGAGATGATGTGATAATAACTTTATTTTATCAGGGAGTTCTGGAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTC
ATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCACCTGAGATGATTGATGGAAAgtatgactattcttgctatatgattcagtctttatgtttttgtaactagtgaatgttattctgtggaatgctgctgaatatagtttgggatgtaacgatatattgggcaaatatattgtcaggttttataacatagaagaaaa
atagatgaagttaatgggcattgttgaccatctgttatttcatccataatcatattttgtctatctgcaaattggagtggaattttggatttttgcaatgaaaactctatgcattgttgtttatgaaaactgtatgaaaatagtattaatatatttattttggtgatatgtatacattgttgtttattcagATATGATGA
GAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGATGGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGCTCAGAAAGAATTTAATAGAAAGCGTAGGG
CTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTCAAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCCGTGCATATTTTGTTCGTCGAGAGTATCAT
CTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCAACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACAGGGGCTCTGCGTGAGGCAAAGAACAAACT
TGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAGGAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAATGTGGTTCTCCGGATTAAACTTGAACTTG
CCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGATTTCAGTGGAATCACTTGAAAAGAAAGTTGCAGAGACACACACAGAATTGGTGATATCTCAAAATGAAAGAGATGGAAGTCTGAGAAAAGTGAAAGAAGTTGAATCAAATGTTTCTCAACTT
CAGGAGACACTGCATAGGCTGGAAGAAAAACTGTCAAACTTGGAGTCTGAGAATCAAGTTCTACGACGGCAATCTTTAGTTGTCTCTCCAACTAATGGCTTTACCAATAATGCAAAGCCTATGAATTTGCAGGTGTTCTATCATACAGAAGACTCCAGAAATTCACCAGGCTTACGATGGGGGTCAGAAATCTATGTTTG
ATTCACCTATTGATTCTCAACAAATCATCAAAATAAGGAGTAATGCTCTGTCCGACACAAAGCAATCAAGGTTTGCCATGGAGAGGCAACAGGAAAACCAACGAGCTCTTGTTAAGTGTGTAATACAAGATGTAGGTTTCAGCAACGATAAACCTGTTGCGGCCTGTATCATATATAAATGCCTTCTTCACTGGCATGCT
TTTGAAGCTGAGATAACACCTGTATTTGAGCTCATTATTCAAACTATTGGCTTAATTATCGAG
Intron 5 GCTACTGAAA ... ATTACTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.35 | 39 | 38 | 38 |
| A2 | 51.65 | 22 | 23 | 24 |
| A3 | 49.21 | 16 | 15 | 16 |
| A4 | 46.27 | 18 | 15 | 16 |
| A5 | 50 | 9 | 9 | 9 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 50 | 1 | 1 | 1 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 50 | 2 | 2 | 2 |
| A10 | 50 | 5 | 5 | 5 |
>TRINITY_DN112705_c1_g3_i8 from sample A3 / Example spliced isoformGCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAACTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCG
AGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTGTTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGG
ATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGATTGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAA
AGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTGGGGACTTCACCAAACCGGCAGCCAGTACAATGGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAATTATTAATGGCCAGATTAAAGTTGT
TACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCAGATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGTAGTATTTTGATTGCTGTAAACCCTT
TTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCCATTTGGGCAGTTAAGTCCTCATGTTTTTGCAGTTGCTGATGCTTCTTATAGGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAACAGAGACGACAAAACTAATAATGCAG
TATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAGTTCTTGAATCAAATCCACTTCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATATCTGGAGCTGCAATTAGGACCTATCT
TTTAGAGAGGTCCCGAGTCGTGCAGATAACAGATCCTGAAAGAAATTACCACTGTTTTTATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGGGAATATGCTAATACTCGAAGGGCCA
TGGATATAGTAGGCATAAGTCTTGATGAACAGGAAGCTATTTTTCGGACACTGGCTGGAATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACCAGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATGTGTGACTCTAAAACACTGCAAGAGGCATTG
TGTACACGTGTGATTGTAACTCGTGAAGGAAATATAATTAAAGCTCTTGATCCTCAGGCAGCTGCCACCAGTCGTGATGCTTTGGCAAAAACATTGTACTCTCGATTATTTGATTGGTTGGTGGATAAAATCAACAAGTCTATAGGACAAGATCAAGATTCTAAAGCTCAAATAGGAGTGTTGGACATCTATGGTTTTGA
AAGTTTTCAGAACAACAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTTCAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAATTCATAGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTTGGAGTAATTTCTC
TATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCTTTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGGTGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAAAAACAG
>TRINITY_DN112705_c1_g3_i3 from sample A3 / Example unspliced isoform:GCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAACTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCG
AGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTGTTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGG
ATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGATTGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAA
AGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTGGGGACTTCACCAAACCGGCAGCCAGTACAATGgctactgaaaagaacattactatagGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAA
TTATTAATGGCCAGATTAAAGTTGTTACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCAGATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGT
AGTATTTTGATTGCTGTAAACCCTTTTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCCATTTGGGCAGTTAAGTCCTCATGTTTTTGCAGTTGCTGATGCTTCTTATAGGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAAC
AGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAGTTCTTGAATCAAATCCACTTCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATAT
CTGGAGCTGCAATTAGGACCTATCTTTTAGAGAGGTCCCGAGTCGTGCAGATAACAGATCCTGAAAGAAATTACCACTGTTTTTATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGG
GAATATGCTAATACTCGAAGGGCCATGGATATAGTAGGCATAAGTCTTGATGAACAGGAAGCTATTTTTCGGACACTGGCTGGAATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACCAGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATGTGTGA
CTCTAAAACACTGCAAGAGGCATTGTGTACACGTGTGATTGTAACTCGTGAAGGAAATATAATTAAAGCTCTTGATCCTCAGGCAGCTGCCACCAGTCGTGATGCTTTGGCAAAAACATTGTACTCTCGATTATTTGATTGGTTGGTGGATAAAATCAACAAGTCTATAGGACAAGATCAAGATTCTAAAGCTCAAATAG
GAGTGTTGGACATCTATGGTTTTGAAAGTTTTCAGAACAACAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTTCAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAATTCATAGACAATCAAGATGTTCTAGATTTAATTGAA
AAGAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCTTTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGGTGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAA
AAACAG
Intron 6 GTTTGATTTA ... CAGTTATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.14 | 22 | 3 | 11 |
| A2 | 27.27 | 16 | 12 | 0 |
| A3 | 20 | 14 | 6 | 1 |
| A4 | 28.57 | 10 | 8 | 0 |
| A5 | 71.43 | 1 | 0 | 5 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 12 | 11 | 2 | 1 |
| A8 | 0 | 13 | 0 | 0 |
| A9 | 20 | 6 | 3 | 0 |
| A10 | 0 | 7 | 0 | 0 |
>TRINITY_DN134682_c0_g1_i24 from sample A1 / Example spliced isoformGTTTGATTTTATCATTTTTCTATGAAATTTCCATCTGTCCTTATTTTGGTGAATGAAACTGCACCACTCTGGTCTTCTTAACTAATATTGTCATTTGTTTCATTTTGTCAGCAACAACTGCAAGCTTTGCTGGAGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATG
GAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGGTCAGATTTCTCATGAAACTGAATCATATATATATCGAATTTTGTCTAGCTATGATCTTTTCATAGATTGATTGTTTTCAGTTGTGGATTGCATTTTTCTTGATTGTTGTCAGGCATGTTGCATGGATATGTGCCGGAAACATTATATACCTTCAGT
TGATGCTCTTCTGCTGTCACTTATGTAGTCTTTCTAATGCATTCAGTGATTCACAAAGAGAAATGGCATCCTAAAGCCATTCATGCCGAGTTGTGTTGCCTTAGACTTGTTTTCAGAGATGATGTGATAATAACTTTATTTTATCAGGGAGTTCTGGAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTC
ATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCACCTGAGATGATTGATGGAAAGTATGACTATTCTTGCTATATGATTCAGTCTTTATGTTTTTGTAACTAGTGAATGTTATTCTGTGGAATGCTGCTGAATATAGTTTGGGATGTAACGATATATTGGGCAAATATATTGTCAGGTTTTATAACATAGAAGAAAA
ATAGATGAAGTTAATGGGCATTGTTGACCATCTGTTATTTCATCCATAATCATATTTTGTCTATCTGCAAATTGGAGTGGAATTTTGGATTTTTGCAATGAAAACTCTATGCATTGTTGTTTATGAAAACTGTATGAAAATAGTATTAATATATTTATTTTGGTGATATGTATACATTGTTGTTTATTCAGATATGATGA
GAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGATGGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGCTCAGAAAGAATTTAATAGAAAGCGTAGGG
CTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTCAAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCCGTGCATATTTTGTTCGTCGAGAGTATCAT
CTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCAACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACAGGGGCTCTGCGTGAGGCAAAGAACAAACT
TGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAGGAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAATGTGGTTCTCCGGATTAAACTTGAACTTG
CCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGATTTCAGTGGAATCACTTGAAAAGAAAGTTGCAGAGACACACACAGAATTGGTGATATCTCAAAATGAAAGAGATGGAAGTCTGAGAAAAGTGAAAGAAGTTGAATCAAATGTTTCTCAACTT
CAGGAGACACTGCATAGGCTGGAAGAAAAACTGTCAAACTTGGAGTCTGAGAATCAAGTTCTACGACGGCAATCTTTAGTTGTCTCTCCAACTAATGGCTTTACCAATAATGCAAAGCCTATGAATTTGCAGGTGTTCTATCATACAGAAGACTCCAGAAATTCACCAGGCTTACGATGGGGGTCAGAAATCTATGTTTG
ATTCACCTATTGATTCTCAACAAATCATCAAAATAAGGAGTAATGCTCTGTCCGACACAAAGCAATCAAGGTTTGCCATGGAGAGGCAACAGGAAAACCAACGAGCTCTTGTTAAGTGTGTAATACAAGATGTAGGTTTCAGCAACGATAAACCTGTTGCGGCCTGTATCATATATAAATGCCTTCTTCACTGGCATGCT
TTTGAAGCTGAGATAACACCTGTATTTGAGCTCATTATTCAAACTATTGGCTTAATTATCGAG
>TRINITY_DN134682_c0_g1_i22 from sample A1 / Example unspliced isoform:CTCTTCCAAATTTGGCGCCGAAAAGTTGGGACAAAACGGCGGCCTCGTGAATTTTCTACCCACACGCAGTTAATATTAATATTATTATAATTTTGTTTCGTATAAGGCTCTCAAAGGGCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAA
CTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCGAGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTG
TTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGGATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGAT
TGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAAAGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTG
GGGACTTCACCAAACCGGCAGCCAGTACAATGGCTACTGAAAAGAACATTACTATAGGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAATTATTAATGGCCAGATTAAAGTTGTTACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCA
GATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGTAGTATTTTGATTGCTGTAAACCCTTTTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCC
ATTTGGGCAGTTAAGTCCTCATGTTTTTGCAGTTGCTGATGCTTCTTATAGGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAACAGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAG
TTCTTGAATCAAATCCACTCCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATATCTGGAGCTGCAATTAGGACCTATCTTTTAGAGAGGTCCCGAGTCGTGCAGATAACAGATCCTGAAAGAAATTACCACTGTTTT
TATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGGGAATATGCTAATACTCGAAGGGCCATGGATATAGTAGGCATAAGTCTTGATGAACAGGAAGCTATTTTTCGGACACTGGCTGG
AATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACCAGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATGTGTGACTCTAAAACACTGCAAGAGGCATTGTGTACACGTGTGATTGTAACTCGTGAAGGAAATATAATTAAAGCTCTTGATCCTCAGG
CAGCTGCCACCAGTCGTGATGCTTTGGCAAAAACATTGTACTCTCGATTATTTGATTGGTTGGTGGATAAAATCAACAAGTCTATAGGACAAGATCAAGATTCTAAAGCTCAAATAGGAGTGTTGGACATCTATGGTTTTGAAAGTTTTCAGAACAACAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTT
CAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAATTCATAGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCT
TTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGGTGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAAAAACAGGGACTACATTGTTGTGGAACACAACAATTTATTGTCATCCTCAAAGTGTGCTTTTGTTGCCAGTCTCTTTCCTGAAC
TAACTTCTGATTCTTCAAAGTCTTCGTTCAAGTTTTCGTCCGTTGCAACACGATTCAAGCAACAACTGCAAGCTTTGCTGGAGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATGGAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGGGAGTTCTG
GAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTCATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCACCTGAGATGATTGATGGAAAATATGATGAGAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGAT
GGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGCTCAGAAAGAATTTAATAGAAAGCGTAGGGCTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTC
AAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCCGTGCATATTTTGTTCGTCGAGAGTATCATCTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCA
ACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACAGGGGCTCTGCGTGAGGCAAAGAACAAACTTGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAG
GAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAATGTGGTTCTCCGGATTAAACTTGAACTTGCCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGATTTCAGTGGAAT
CACTTGAAAAGAAAGTTGCAGAGACACACACAGAATTGGTGATATCTCAAAATGAAAGAGATGGAAGTCTGAGAAAAGTGAAAGAAGTTGAATCAAATGTTTCTCAACTTCAGGAGACACTGCATAGGCTGGAAGAAAAACTGTCAAACTTGGAGTCTGAGAATCAAGTTCTACGACGGCAATCTTTAGTTGTCTCTCCA
ACTAATGGCTTTACCAATAATGCAAAGCCTATGAATTTGCAGgtttgatttatttttggatttatcttagtgcatttctgttcattttgttttgtatcaatgtatggagaggatatcaaaggaaacatccgggggcagtttgaatgggaacagttatgttcggtattcttttgctcaggaagtttaaatcgtgtatctag
attctaaagaatctaaacatatttgtatcctatatttgctttacataacattttatattttgacataagaaagaaggcctacatattgaagcaaataatttttgactaatatttgtacgtctagattccttgtgttattttccatgattcgtttgtactttatagatttgacgtgattttatgagatcttgagctcagtt
attagGTGTTCTATCATACAGAAGACTCCAGAAATTCACCAGGCTTACGATGGGGGTCAGAAATCTATGTTTGATTCACCTATTGATTCTCAACAAATCATCAAAATAAGGAGTAATGCTCTGTCCGACACAAAGCAATCAAGGTTTGCCATGGAGAGGCAACAGGAAAACCAACGAGCTCTTGTTAAGTGTGTAATACA
AGATGTAGGTTTCAGCAACGATAAACCTGTTGCGGCCTGTATCATATATAAATGCCTTCTTCACTGGCATGCTTTTGAAGCTGAGATAACACCTGTATTTGAGCTCATTATTCAAACTATTGGCTTAATTATCGAGGAAAAGGATGATAATGATGCTTTGTCATATTGGCTTTCCAATACTTCAACATTGATTTTCTTAC
TTCAACGCAACTTGAAACCAAGTGGGCTTACAACAACTCCTCAACGTCGTTACCCTGGATCAGTCACTCTTATTGGGAGGATGACACAAGGGTTCAAATCACCATCAAATCATGGCTCGTTGGGAACGGGTGGAACCTTTGGTGCACAGGAGGGCATACAACAAGTGGAAGCAAAGTATCCAGCTATACTATTCAAACAA
CAAGTCACTACTTATCTAGAAAAAATATATGGGATAGTCCGAGAGAATGTGAAGAAAGATATAGGACCACTACTTAGCCTTTGTATTCAAGCACCAAGAATGTCACGCACAAGTATGAGCAAAGGATCACGTTCACCAAACATGATTGGAGCTACCCAACAAGTTTTGAGCAGTCATTGGCATAGTATTATCAAAATCCT
GAACTCTTTATTGAGTAAACTCCATGCAAATCATGTACCTCCGCTTTTAGTTTGTAAACTCTTTACTCAAGTTTTTTCATTCATCAATGTGCAACTTTTCAACAGCCTGTTGTTACGACGGGAGTGCTGTTCATTTAGCAATGGTGAATATATAAAATCTGGAATTGCAGAACTGGAACGGTGGATATGTGAGGCTTCAG
AACAATATGTAGGGACATCCTGGGATGAATTAAGGTACATCAGGCAAGCTGTTGGATTCCTGGTCATACATCAGAAAGCAAAGAAGACTTTAGATGAAATTATGCAGGATATTTGCCCAGTGCTAACTGTTCAACAGCTTTATCGGATAAGCACCATGTATTGGGATGATAAATATGGCACACAGAGTGTATCCCGTGAG
GTTTTTGGAAGCATGAAGCTGATGATGACAAAGAGTCCTCAAAATGCCTCGACCAATACATTTCTGCTGGATGATGATACAAGCATACCCTTTTCTGTTGATGAATTAACAAAGGGTATGGCAGATGTTGATCTCTCAGATGTGGAGACCCCACCCCTACTCCGTGACATCTCAGCTTTTCAATTTTTGCAACAGAACGG
ATAGCAATGAGAAAGCTTCTTAGCTATCATTCTGTACCTTTCCTAAATTTTTGGATGAGAACTTGCTGCATTATGTTGATATATTAAACATTCTTATACAGGAGCAGTATATTGATCAACCTATCAAATTAATTTGTGGATCATCTGGCATCTGTCCTTTGTTTTTTGTGATATCCCTGCAATGAGTTAAGCAGGTCTAT
GGGTGCTGTCATTTTCTTCTCAGTCAATGGAAGAAAGTATTCTTCTCCTCAGTTTTCTTCTGGAAGCCTATGCCCAGTTTGCCATACAGTTCGATACAGTTCTCTATGAGTGGGGAATGGGGAAACACAGTTTGTAACAATCATGGCAGTGAATGCCTTGCATCAGATAGTGCCAATATATTATTAATTGCCA
Intron 7 GTCAGATTTC ... ATTTTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.71 | 14 | 11 | 2 |
| A2 | 31.03 | 20 | 14 | 4 |
| A3 | 25 | 18 | 4 | 8 |
| A4 | 39.39 | 10 | 7 | 6 |
| A5 | 41.67 | 7 | 1 | 9 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 0 | 2 | 0 | 0 |
| A8 | 20 | 2 | 1 | 0 |
| A9 | 17.65 | 7 | 3 | 0 |
| A10 | 18.52 | 11 | 1 | 4 |
>TRINITY_DN134682_c0_g1_i3 from sample A1 / Example spliced isoformAGAAGATAAAGTTTGTGCTAGGGTGGCATATATCATTGCTTGACTTCACTAATTTGTTAATATATTTATTTGTGGTCAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTTCAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAA
TTCATAGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCTTTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGG
TGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAAAAACAGGGACTACATTGTTGTGGAACACAACAATTTATTGTCATCCTCAAAGTGTGCTTTTGTTGCCAGTCTCTTTCCTGAACTAACTTCTGATTCTTCAAAGTCTTCGTTCAAGTTTTCGTCCGTTGCAACACGATTCAAGCAACAACTGCAAGCTTTGCTGG
AGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATGGAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGGGAGTTCTGGAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTCATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCA
CCTGAGATGATTGATGGAAAATATGATGAGAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGATGGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGC
TCAGAAAGAATTTAATAGAAAGCGTAGGGCTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTCAAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCC
GTGCATATTTTGTTCGTCGAGAGTATCATCTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCAACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACA
GGGGCTCTGCGTGAGGCAAAGAACAAACTTGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAGGAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAA
TGTGGTTCTCCGGATTAAACTTGAACTTGCCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGGTAAAATACTGCAGATAGTGATCAGATATGCCGAAGTA
>TRINITY_DN134682_c0_g1_i24 from sample A1 / Example unspliced isoform:GTTTGATTTTATCATTTTTCTATGAAATTTCCATCTGTCCTTATTTTGGTGAATGAAACTGCACCACTCTGGTCTTCTTAACTAATATTGTCATTTGTTTCATTTTGTCAGCAACAACTGCAAGCTTTGCTGGAGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATG
GAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGgtcagatttctcatgaaactgaatcatatatatatcgaattttgtctagctatgatcttttcatagattgattgttttcagttgtggattgcatttttcttgattgttgtcaggcatgttgcatggatatgtgccggaaacattatataccttcagt
tgatgctcttctgctgtcacttatgtagtctttctaatgcattcagtgattcacaaagagaaatggcatcctaaagccattcatgccgagttgtgttgccttagacttgttttcagagatgatgtgataataactttattttatcagGGAGTTCTGGAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTC
ATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCACCTGAGATGATTGATGGAAAGTATGACTATTCTTGCTATATGATTCAGTCTTTATGTTTTTGTAACTAGTGAATGTTATTCTGTGGAATGCTGCTGAATATAGTTTGGGATGTAACGATATATTGGGCAAATATATTGTCAGGTTTTATAACATAGAAGAAAA
ATAGATGAAGTTAATGGGCATTGTTGACCATCTGTTATTTCATCCATAATCATATTTTGTCTATCTGCAAATTGGAGTGGAATTTTGGATTTTTGCAATGAAAACTCTATGCATTGTTGTTTATGAAAACTGTATGAAAATAGTATTAATATATTTATTTTGGTGATATGTATACATTGTTGTTTATTCAGATATGATGA
GAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGATGGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGCTCAGAAAGAATTTAATAGAAAGCGTAGGG
CTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTCAAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCCGTGCATATTTTGTTCGTCGAGAGTATCAT
CTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCAACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACAGGGGCTCTGCGTGAGGCAAAGAACAAACT
TGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAGGAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAATGTGGTTCTCCGGATTAAACTTGAACTTG
CCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGATTTCAGTGGAATCACTTGAAAAGAAAGTTGCAGAGACACACACAGAATTGGTGATATCTCAAAATGAAAGAGATGGAAGTCTGAGAAAAGTGAAAGAAGTTGAATCAAATGTTTCTCAACTT
CAGGAGACACTGCATAGGCTGGAAGAAAAACTGTCAAACTTGGAGTCTGAGAATCAAGTTCTACGACGGCAATCTTTAGTTGTCTCTCCAACTAATGGCTTTACCAATAATGCAAAGCCTATGAATTTGCAGGTGTTCTATCATACAGAAGACTCCAGAAATTCACCAGGCTTACGATGGGGGTCAGAAATCTATGTTTG
ATTCACCTATTGATTCTCAACAAATCATCAAAATAAGGAGTAATGCTCTGTCCGACACAAAGCAATCAAGGTTTGCCATGGAGAGGCAACAGGAAAACCAACGAGCTCTTGTTAAGTGTGTAATACAAGATGTAGGTTTCAGCAACGATAAACCTGTTGCGGCCTGTATCATATATAAATGCCTTCTTCACTGGCATGCT
TTTGAAGCTGAGATAACACCTGTATTTGAGCTCATTATTCAAACTATTGGCTTAATTATCGAG
Intron 8 GTATGGGATG ... ACTGGAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.66 | 21 | 6 | 11.7 |
| A2 | 20.99 | 32 | 8 | 9 |
| A3 | 24.53 | 20 | 5 | 8 |
| A4 | 25.49 | 19 | 10 | 3 |
| A5 | 15.79 | 24 | 4 | 5 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 33.33 | 5 | 0 | 5 |
| A8 | 25 | 3 | 0 | 2 |
| A9 | 33.33 | 3 | 3 | 0 |
| A10 | 11.11 | 4 | 0 | 1 |
>TRINITY_DN134682_c0_g1_i12 from sample A1 / Example spliced isoformCTCTTCCAAATTTGGCGCCGAAAAGTTGGGACAAAACGGCGGCCTCGTGAATTTTCTACCCACACGCAGTTAATATTAATATTATTATAATTTTGTTTCGTATAAGGCTCTCAAAGGGCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAA
CTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCGAGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTG
TTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGGATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGAT
TGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAAAGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTG
GGGACTTCACCAAACCGGCAGCCAGTACAATGGCTACTGAAAAGAACATTACTATAGGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAATTATTAATGGCCAGATTAAAGTTGTTACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCA
GATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGTAGTATTTTGATTGCTGTAAACCCTTTTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCC
ATTTGGGCAGTTAAGTCCTCATGTTTTTGCAGTTGCTGATGCTTCTTATAGGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAACAGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAG
TTCTTGAATCAAATCCACTCCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATATCTGGAGCTGCAATTAGGACCTATCTTTTAGAGAGGTCCCGAGTCGTGCAGATAACAGATCCTGAAAGAAATTACCACTGTTTT
TATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGGGAATATGCTAATACTCGAAGGGCCATGGATATAGTAGGCATAAGTCTTGATGAACAGGAAGCTATTTTTCGGACACTGGCTGG
AATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACCAGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATGTGTGACTCTAAAACACTGCAAGAGGCATTGTGTACACGTGTGATTGTAACTCGTGAAGGAAATATAATTAAAGCTCTTGATCCTCAGG
CAGCTGCCACCAGTCGTGATGCTTTGGCAAAAACATTGTACTCTCGATTATTTGATTGTTACCACATTGCAGGTTGGTGGATAAAATCAAC
>TRINITY_DN134682_c0_g1_i4 from sample A1 / Example unspliced isoform:CTCTTCCAAATTTGGCGCCGAAAAGTTGGGACAAAACGGCGGCCTCGTGAATTTTCTACCCACACGCAGTTAATATTAATATTATTATAATTTTGTTTCGTATAAGGCTCTCAAAGGGCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAA
CTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCGAGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTG
TTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGGATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGAT
TGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAAAGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTG
GGGACTTCACCAAACCGGCAGCCAGTACAATGGCTACTGAAAAGAACATTACTATAGGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAATTATTAATGGCCAGATTAAAGTTGTTACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCA
GATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGTAGTATTTTGATTGCTGTAAACCCTTTTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCC
ATTTGGGCAGTTAAGTCCTCATGTTTTTGCAGTTGCTGATGCTTCTTATAGGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAACAGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAG
TTCTTGAATCAAATCCACTCCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATATCTGGAGCTGCAATTAGGACCTATCTTTTAGAGAGGTCCCGAGTCGTGCAGATAACAGATCCTGAAAGAAATTACCACTGTTTT
TATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGGGAATATGCTAATACTCGAAGGGCCATGGATATAGTAGGCATAAGTCTTGATGAACAGgtatgggatgcttctaaactattttc
aaatgtaaggatttaattgtggtctttatttaacatgaccccatttaggagaaaacctccctgttagttcttatatatgacttctcaatctacaatactggaatagGAAGCTATTTTTCGGACACTGGCTGGAATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACC
AGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATGTAAGGTTGTTTGTTGATAAATACTGATAATCAGAGATTGGTGTTTTTAAGATGAGCAATGATAATTTTATTAATTGGCAGATAGTTGTCTTGTTCCCCTCTGTGGAAGCACAAACGGAGGCAACATTTCACTTGTCGATTATGTTGCACTCGTTTT
GTTGAATGATTTGAGCTGAATTAACTTTTCTTGTACTGAATTTCTTTGCTTCTTGCATCCATA
Intron 9 GTTTGATTTA ... TATCATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.41 | 24 | 3 | 17 |
| A2 | 27.66 | 17 | 12 | 1 |
| A3 | 21.21 | 13 | 6 | 1 |
| A4 | 27.62 | 10.5 | 8 | 0 |
| A5 | 60 | 2 | 0 | 6 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 15.38 | 11 | 2 | 2 |
| A8 | 0 | 13 | 0 | 0 |
| A9 | 20 | 6 | 3 | 0 |
| A10 | 5.88 | 8 | 0 | 1 |
>TRINITY_DN134682_c0_g1_i11 from sample A1 / Example spliced isoformCTCTTCCAAATTTGGCGCCGAAAAGTTGGGACAAAACGGCGGCCTCGTGAATTTTCTACCCACACGCAGTTAATATTAATATTATTATAATTTTGTTTCGTATAAGGCTCTCAAAGGGCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAA
CTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCGAGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTG
TTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGGATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGAT
TGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAAAGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTG
GGGACTTCACCAAACCGGCAGCCAGTACAATGGCTACTGAAAAGAACATTACTATAGGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAATTATTAATGGCCAGATTAAAGTTGTTACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCA
GATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGTAGTATTTTGATTGCTGTAAACCCTTTTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCC
ATTTGGGCAGTTAAGTCCTCATGTTTTTGCAGTTGCTGATGCTTCTTATAGGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAACAGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAG
TTCTTGAATCAAATCCACTCCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATATCTGGAGCTGCAATTAGGACCTATCTTTTAGAGAGGTCCCGAGTCGTGCAGATAACAGATCCTGAAAGAAATTACCACTGTTTT
TATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGGGAATATGCTAATACTCGAAGGGCCATGGATATAGTAGGCATAAGTCTTGATGAACAGGAAGCTATTTTTCGGACACTGGCTGG
AATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACCAGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATGTGTGACTCTAAAACACTGCAAGAGGCATTGTGTACACGTGTGATTGTAACTCGTGAAGGAAATATAATTAAAGCTCTTGATCCTCAGG
CAGCTGCCACCAGTCGTGATGCTTTGGCAAAAACATTGTACTCTCGATTATTTGATTGGTTGGTGGATAAAATCAACAAGTCTATAGGACAAGATCAAGATTCTAAAGCTCAAATAGGAGTGTTGGACATCTATGGTTTTGAAAGTTTTCAGAACAACAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTT
CAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAATTCATAGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCT
TTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGGTGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAAAAACAGGGACTACATTGTTGTGGAACACAACAATTTATTGTCATCCTCAAAGTGTGCTTTTGTTGCCAGTCTCTTTCCTGAAC
TAACTTCTGATTCTTCAAAGTCTTCGTTCAAGTTTTCGTCCGTTGCAACACGATTCAAGCAACAACTGCAAGCTTTGCTGGAGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATGGAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGGGAGTTCTG
GAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTCATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCACCTGAGATGATTGATGGAAAATATGATGAGAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGAT
GGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGCTCAGAAAGAATTTAATAGAAAGCGTAGGGCTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTC
AAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCCGTGCATATTTTGTTCGTCGAGAGTATCATCTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCA
ACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACAGGGGCTCTGCGTGAGGCAAAGAACAAACTTGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAG
GAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAATGTGGTTCTCCGGATTAAACTTGAACTTGCCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGATTTCAGTGGAAT
CACTTGAAAAGAAAGTTGCAGAGACACACACAGAATTGGTGATATCTCAAAATGAAAGAGATGGAAGTCTGAGAAAAGTGAAAGAAGTTGAATCAAATGTTTCTCAACTTCAGGAGACACTGCATAGGCTGGAAGAAAAACTGTCAAACTTGGAGTCTGAGAATCAAGTTCTACGACGGCAATCTTTAGTTGTCTCTCCA
ACTAATGGCTTTACCAATAATGCAAAGCCTATGAATTTGCAGAAGACTCCAGAAATTCACCAGGCTTACGATGGGGGTCAGAAATCTATGTTTGATTCACCTATTGATTCTCAACAAATCATCAAAATAAGGAGTAATGCTCTGTCCGACACAAAGCAATCAAGGTTTGCCATGGAGAGGCAACAGGAAAACCAACGAGC
TCTTGTTAAGTGTGTAATACAAGATGTAGGTTTCAGCAACGATAAACCTGTTGCGGCCTGTATCATATATAAATGCCTTCTTCACTGGCATGCTTTTGAAGCTGAGATAACACCTGTATTTGAGCTCATTATTCAAACTATTGGCTTAATTATCGAGGAAAAGGATGATAATGATGCTTTGTCATATTGGCTTTCCAATA
CTTCAACATTGATTTTCTTACTTCAACGCAACTTGAAACCAAGTGGGCTTACAACAACTCCTCAACGTCGTTACCCTGGATCAGTCACTCTTATTGGGAGGATGACACAAGGGTTCAAATCACCATCAAATCATGGCTCGTTGGGAACGGGTGGAACCTTTGGTGCACAGGAGGGCATACAACAAGTGGAAGCAAAGTAT
CCAGCTATACTATTCAAACAACAAGTCACTACTTATCTAGAAAAAATATATGGGATAGTCCGAGAGAATGTGAAGAAAGATATAGGACCACTACTTAGCCTTTGTATTCAAGCACCAAGAATGTCACGCACAAGTATGAGCAAAGGATCACGTTCACCAAACATGATTGGAGCTACCCAACAAGTTTTGAGCAGTCATTG
GCATAGTATTATCAAAATCCTGAACTCTTTATTGAGTAAACTCCATGCAAATCATGTACCTCCGCTTTTAGTTTGTAAACTCTTTACTCAAGTTTTTTCATTCATCAATGTGCAACTTTTCAACAGCCTGTTGTTACGACGGGAGTGCTGTTCATTTAGCAATGGTGAATATATAAAATCTGGAATTGCAGAACTGGAAC
GGTGGATATGTGAGGCTTCAGAACAATATGTAGGGACATCCTGGGATGAATTAAGGTACATCAGGCAAGCTGTTGGATTCCTGGTCATACATCAGAAAGCAAAGAAGACTTTAGATGAAATTATGCAGGATATTTGCCCAGTGCTAACTGTTCAACAGCTTTATCGGATAAGCACCATGTATTGGGATGATAAATATGGC
ACACAGAGTGTATCCCGTGAGGTTTTTGGAAGCATGAAGCTGATGATGACAAAGAGTCCTCAAAATGCCTCGACCAATACATTTCTGCTGGATGATGATACAAGCATACCCTTTTCTGTTGATGAATTAACAAAGGGTATGGCAGATGTTGATCTCTCAGATGTGGAGACCCCACCCCTACTCCGTGACATCTCAGCTTT
TCAATTTTTGCAACAGAACGGATAGCAATGAGAAAGCTTCTTAGCTATCATTCTGTACCTTTCCTAAATTTTTGGATGAGAACTTGCTGCATTATGTTGATATATTAAACATTCTTATACAGGAGCAGTATATTGATCAACCTATCAAATTAATTTGTGGATCATCTGGCATCTGTCCTTTGTTTTTTGTGATATCCCTG
CAATGAGTTAAGCAGGTCTATGGGTGCTGTCATTTTCTTCTCAGTCAATGGAAGAAAGTATTCTTCTCCTCAGTTTTCTTCTGGAAGCCTATGCCCAGTTTGCCATACAGTTCGATACAGTTCTCTATGAGTGGGGAATGGGGAAACACAGTTTGTAACAATCATGGCAGTGAATGCCTTGCATCAGATAGTGCCAATAT
ATTATTAATTGCCA
>TRINITY_DN134682_c0_g1_i22 from sample A1 / Example unspliced isoform:CTCTTCCAAATTTGGCGCCGAAAAGTTGGGACAAAACGGCGGCCTCGTGAATTTTCTACCCACACGCAGTTAATATTAATATTATTATAATTTTGTTTCGTATAAGGCTCTCAAAGGGCAAATCTTTATTTTTACTCATAATTTCATTAGCGGGAATTCATGGGAGAAGGAGAGTGCAGAATAACCCTCGTGGCCATGAA
CTTTCTTCATGTAAATTTCTGTCCGCCTTCGGAGCCTTTACACAATGCAAATCCTCCCTGCGGGCATTCTCTGTTGCAGAGTTTGAAGCTTTCGGTCTTCTAAATAACAGACAAGCGAGGGTTTCAAATGCTACGTTTTAAGATAATTTTCGCCAGGTTTCGTCTGGGTTGCAGCATCTCGGGTTCGAAACAAAAATTTG
TTCTTATATCTGTCTTCTTTGCTCTGTTTCGGGCTCCCGGAGCTCAGAGCTTCTGGCCGCAGCTTTAAAATTCTTTTCAAACGGCTCGGTACGGAGTTCGTTCTCCCTAATTTGTGGATTGTGCAGGTTTTTGAGACGGTTGCTTCAAAGAGCTGAATTTGAAGTTATAGAAAATAAATTTAAAACTTCGTGGCGAGGAT
TGCTGCAGAAACCGGAAACTGCACTTTGTTGCCTGGTTGAATTGTGGAGCTTTGTTTAGCTTTTCGAAATCTGCCTGCAATTTGTCAAATCGACATAAAGAAAATCTAGCTTTATAAAGAAAATCAAAGCTGAGGCGGACTTTGGTAGCTTAAGAGTACTACAGAGAAGCCTGGGTTTATGGCGTCCAGTAGCGGACGTG
GGGACTTCACCAAACCGGCAGCCAGTACAATGGCTACTGAAAAGAACATTACTATAGGGTCAAAAGTATGGATTGAGGACAGCAAAATGGCATGGGTCAAGGCTGAAGTGATTGAAATTATTAATGGCCAGATTAAAGTTGTTACAGGCAAAGGAACTACGTTATGTACTTCCATTTTCAAGGTTCACCCAAGAGATCCA
GATGTAAAGCACGGAGGAGTGGATGACATGACTAAGCTGGCTTATCTAAATGAACCGGGTGTTTTATACAACCTTGCAAGAAGATATGAGCTCAATGATATATATACATATACAGGTAGTATTTTGATTGCTGTAAACCCTTTTACAAAGCTTCCCCATCTCTACAACGTTCACATGATGGAGCAGTATAGAGGAGCTCC
ATTTGGGCAGTTAAGTCCTCATGTTTTTGCAGTTGCTGATGCTTCTTATAGGGCAATGATAAATGAAGGGCACAGCCAGTCAATACTGGTGAGTGGAGAAAGTGGAGCAGGAAAAACAGAGACGACAAAACTAATAATGCAGTATTTAGCTTATATGGGTGGCCGGGCTGCTATAGATAATAGGACAGTGGAGCAACAAG
TTCTTGAATCAAATCCACTCCTAGAGGCATTTGGCAATGCAAAAACAATACGAAATAATAATTCAAGTCGGTTTGGGAAATTTGTTGAAATTCAATTTGACAAAAATGGTAGAATATCTGGAGCTGCAATTAGGACCTATCTTTTAGAGAGGTCCCGAGTCGTGCAGATAACAGATCCTGAAAGAAATTACCACTGTTTT
TATCAACTATGTGCTTCGCCAGAGGATGTGGAGAAGTACAAGCTTGGTGATCCTAGGAGACTCCACTATCTGAACCAGAGCAGTACGCATGAGTTATCTGGCGTGAGTAATGCTAGGGAATATGCTAATACTCGAAGGGCCATGGATATAGTAGGCATAAGTCTTGATGAACAGGAAGCTATTTTTCGGACACTGGCTGG
AATACTGCATTTGGGAAATATTGAATTCGCTTCCGGCAGAGAGCATGATTCCTCAATGCCAAGGGACCAGGAATCTATTTTTCATCTCCAAACTGCAGCAGAATTATTCATGTGTGACTCTAAAACACTGCAAGAGGCATTGTGTACACGTGTGATTGTAACTCGTGAAGGAAATATAATTAAAGCTCTTGATCCTCAGG
CAGCTGCCACCAGTCGTGATGCTTTGGCAAAAACATTGTACTCTCGATTATTTGATTGGTTGGTGGATAAAATCAACAAGTCTATAGGACAAGATCAAGATTCTAAAGCTCAAATAGGAGTGTTGGACATCTATGGTTTTGAAAGTTTTCAGAACAACAGTTTTGAGCAGTTTTGTATTAACTTTGCCAATGAGAAGCTT
CAACAACATTTTAATCAGCATGTGTTTAAAATGGAGCAAGATGATTACAGCAAAGAAGAAATCAATTGGAGCTACATAGAATTCATAGACAATCAAGATGTTCTAGATTTAATTGAAAAGAAGCCTGTTGGAGTAATTTCTCTATTAGATGAAGCCTGCTTGTTCCCCAAATCAACAAACGAGACTTTTGCGACCAAGCT
TTTTAACCACTTTGGGAATCATCAGAGGTTCAAGAAACCTAGGCTAGCACAGACAGACTTCACACTTTCTCATTATGCTGGTGAGGTGACCTATCAGACGGATCTTTTCCTAGAGAAAAACAGGGACTACATTGTTGTGGAACACAACAATTTATTGTCATCCTCAAAGTGTGCTTTTGTTGCCAGTCTCTTTCCTGAAC
TAACTTCTGATTCTTCAAAGTCTTCGTTCAAGTTTTCGTCCGTTGCAACACGATTCAAGCAACAACTGCAAGCTTTGCTGGAGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATGGAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGGGAGTTCTG
GAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTCATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCACCTGAGATGATTGATGGAAAATATGATGAGAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGAT
GGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGCTCAGAAAGAATTTAATAGAAAGCGTAGGGCTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTC
AAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCCGTGCATATTTTGTTCGTCGAGAGTATCATCTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCA
ACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACAGGGGCTCTGCGTGAGGCAAAGAACAAACTTGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAG
GAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAATGTGGTTCTCCGGATTAAACTTGAACTTGCCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGATTTCAGTGGAAT
CACTTGAAAAGAAAGTTGCAGAGACACACACAGAATTGGTGATATCTCAAAATGAAAGAGATGGAAGTCTGAGAAAAGTGAAAGAAGTTGAATCAAATGTTTCTCAACTTCAGGAGACACTGCATAGGCTGGAAGAAAAACTGTCAAACTTGGAGTCTGAGAATCAAGTTCTACGACGGCAATCTTTAGTTGTCTCTCCA
ACTAATGGCTTTACCAATAATGCAAAGCCTATGAATTTGCAGgtttgatttatttttggatttatcttagtgcatttctgttcattttgttttgtatcaatgtatggagaggatatcaaaggaaacatccgggggcagtttgaatgggaacagttatgttcggtattcttttgctcaggaagtttaaatcgtgtatctag
attctaaagaatctaaacatatttgtatcctatatttgctttacataacattttatattttgacataagaaagaaggcctacatattgaagcaaataatttttgactaatatttgtacgtctagattccttgtgttattttccatgattcgtttgtactttatagatttgacgtgattttatgagatcttgagctcagtt
attaggtgttctatcatacagAAGACTCCAGAAATTCACCAGGCTTACGATGGGGGTCAGAAATCTATGTTTGATTCACCTATTGATTCTCAACAAATCATCAAAATAAGGAGTAATGCTCTGTCCGACACAAAGCAATCAAGGTTTGCCATGGAGAGGCAACAGGAAAACCAACGAGCTCTTGTTAAGTGTGTAATACA
AGATGTAGGTTTCAGCAACGATAAACCTGTTGCGGCCTGTATCATATATAAATGCCTTCTTCACTGGCATGCTTTTGAAGCTGAGATAACACCTGTATTTGAGCTCATTATTCAAACTATTGGCTTAATTATCGAGGAAAAGGATGATAATGATGCTTTGTCATATTGGCTTTCCAATACTTCAACATTGATTTTCTTAC
TTCAACGCAACTTGAAACCAAGTGGGCTTACAACAACTCCTCAACGTCGTTACCCTGGATCAGTCACTCTTATTGGGAGGATGACACAAGGGTTCAAATCACCATCAAATCATGGCTCGTTGGGAACGGGTGGAACCTTTGGTGCACAGGAGGGCATACAACAAGTGGAAGCAAAGTATCCAGCTATACTATTCAAACAA
CAAGTCACTACTTATCTAGAAAAAATATATGGGATAGTCCGAGAGAATGTGAAGAAAGATATAGGACCACTACTTAGCCTTTGTATTCAAGCACCAAGAATGTCACGCACAAGTATGAGCAAAGGATCACGTTCACCAAACATGATTGGAGCTACCCAACAAGTTTTGAGCAGTCATTGGCATAGTATTATCAAAATCCT
GAACTCTTTATTGAGTAAACTCCATGCAAATCATGTACCTCCGCTTTTAGTTTGTAAACTCTTTACTCAAGTTTTTTCATTCATCAATGTGCAACTTTTCAACAGCCTGTTGTTACGACGGGAGTGCTGTTCATTTAGCAATGGTGAATATATAAAATCTGGAATTGCAGAACTGGAACGGTGGATATGTGAGGCTTCAG
AACAATATGTAGGGACATCCTGGGATGAATTAAGGTACATCAGGCAAGCTGTTGGATTCCTGGTCATACATCAGAAAGCAAAGAAGACTTTAGATGAAATTATGCAGGATATTTGCCCAGTGCTAACTGTTCAACAGCTTTATCGGATAAGCACCATGTATTGGGATGATAAATATGGCACACAGAGTGTATCCCGTGAG
GTTTTTGGAAGCATGAAGCTGATGATGACAAAGAGTCCTCAAAATGCCTCGACCAATACATTTCTGCTGGATGATGATACAAGCATACCCTTTTCTGTTGATGAATTAACAAAGGGTATGGCAGATGTTGATCTCTCAGATGTGGAGACCCCACCCCTACTCCGTGACATCTCAGCTTTTCAATTTTTGCAACAGAACGG
ATAGCAATGAGAAAGCTTCTTAGCTATCATTCTGTACCTTTCCTAAATTTTTGGATGAGAACTTGCTGCATTATGTTGATATATTAAACATTCTTATACAGGAGCAGTATATTGATCAACCTATCAAATTAATTTGTGGATCATCTGGCATCTGTCCTTTGTTTTTTGTGATATCCCTGCAATGAGTTAAGCAGGTCTAT
GGGTGCTGTCATTTTCTTCTCAGTCAATGGAAGAAAGTATTCTTCTCCTCAGTTTTCTTCTGGAAGCCTATGCCCAGTTTGCCATACAGTTCGATACAGTTCTCTATGAGTGGGGAATGGGGAAACACAGTTTGTAACAATCATGGCAGTGAATGCCTTGCATCAGATAGTGCCAATATATTATTAATTGCCA
Intron 10 GTAGTTTTTT ... CATCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.55 | 31 | 1 | 13 |
| A2 | 29.41 | 12 | 0 | 5 |
| A3 | 25 | 9 | 0 | 3 |
| A4 | 28.57 | 15 | 0 | 6 |
| A5 | 40 | 6 | 0 | 4 |
| A6 | 33.33 | 4 | 0 | 2 |
| A7 | 20 | 8 | 0 | 2 |
| A8 | 40 | 6 | 0 | 4 |
| A9 | 23.08 | 10 | 0 | 3 |
| A10 | 10 | 9 | 0 | 1 |
>TRINITY_DN134682_c0_g1_i24 from sample A1 / Example spliced isoformGTTTGATTTTATCATTTTTCTATGAAATTTCCATCTGTCCTTATTTTGGTGAATGAAACTGCACCACTCTGGTCTTCTTAACTAATATTGTCATTTGTTTCATTTTGTCAGCAACAACTGCAAGCTTTGCTGGAGACTCTAAGCTCCACCGAACCACACTTTATACGTTGTGTCAAACCAAATGCAGATAACAAGCCATG
GAACTTTGAGAACCAAAGTGTGCTGCATCAACTTCGTTGTGGGGTCAGATTTCTCATGAAACTGAATCATATATATATCGAATTTTGTCTAGCTATGATCTTTTCATAGATTGATTGTTTTCAGTTGTGGATTGCATTTTTCTTGATTGTTGTCAGGCATGTTGCATGGATATGTGCCGGAAACATTATATACCTTCAGT
TGATGCTCTTCTGCTGTCACTTATGTAGTCTTTCTAATGCATTCAGTGATTCACAAAGAGAAATGGCATCCTAAAGCCATTCATGCCGAGTTGTGTTGCCTTAGACTTGTTTTCAGAGATGATGTGATAATAACTTTATTTTATCAGGGAGTTCTGGAAGCAGTACGGATTAGCTGCGCAGGTTATCCAACACGATGTTC
ATATGATGAATTTTTAGATCGTTTTGGACTGCTAGCACCTGAGATGATTGATGGAAAGTATGACTATTCTTGCTATATGATTCAGTCTTTATGTTTTTGTAACTAGTGAATGTTATTCTGTGGAATGCTGCTGAATATAGTTTGGGATGTAACGATATATTGGGCAAATATATTGTCAGGTTTTATAACATAGAAGAAAA
ATAGATGAAGTTAATGGGCATTGTTGACCATCTGTTATTTCATCCATAATCATATTTTGTCTATCTGCAAATTGGAGTGGAATTTTGGATTTTTGCAATGAAAACTCTATGCATTGTTGTTTATGAAAACTGTATGAAAATAGTATTAATATATTTATTTTGGTGATATGTATACATTGTTGTTTATTCAGATATGATGA
GAAAGCTGCTACAGAAAAGTTGTTAGAGAAACTGAACCTTAGCAATTATCAATTGGGGAAAACAAAGGTTTTCCTTAGGGCAGGTCAGATGGCTGAGTTGGATGCTCGAAGATCGGAGGCTCTGAATAATGCAGCTAAAGTTATTCAACGGCAGTTTCGTACATTCATTGCTCAGAAAGAATTTAATAGAAAGCGTAGGG
CTGCTTTGAAAATCCAATGTTACTGGAGAGGTTGGCTTGCACGCAAGCAGTATAAAGTTATTCGAAGGGAAGCTGCATCAATTATTATTCAAAAGTACATCCGCAGGTGGTTACATCAGAAGACCTACATTCATCTTCGTTTTGCAGTCAATACTATACAAGCTGGAATCCGTGCATATTTTGTTCGTCGAGAGTATCAT
CTTAAAAGGCAAACACTAGCTGCAGTTATAATTCAGAAAAATTGGCGGATGTGCAAAGCTCATTTATATTTCGTTCATTTGCGGGTGGCAACCATTGCTTTCCAGTGTGCATGGAGGAGCAGGCTTGCAAGAAAGGAACTCCATAGATTGAAGCTGGCTGCAAGGGAAACAGGGGCTCTGCGTGAGGCAAAGAACAAACT
TGAGAAGCGGTGTGAGGAACTAACATGGAGACTAGAACTTGAGAAGAGATTGCGTGCTGATGCTGAAGAATCCAAGAGTTTGGAAATTAGGAAGCTCCAGAATGCTTTGGAAGAAATGCAGCTTGAATCAGATGCAGCTAAGGCACTTGCATTGAAAGAGCAAGAGGCAAATGTGGTTCTCCGGATTAAACTTGAACTTG
CCACGAATCAAAGCTCAGCCTTGGAAGAGAGCTATGAGAAAATCCAGGACCTGACAAGAGAGAATCAGTCTCTGAAGATTTCAGTGGAATCACTTGAAAAGAAAGTTGCAGAGACACACACAGAATTGGTGATATCTCAAAATGAAAGAGATGGAAGTCTGAGAAAAGTGAAAGAAGTTGAATCAAATGTTTCTCAACTT
CAGGAGACACTGCATAGGCTGGAAGAAAAACTGTCAAACTTGGAGTCTGAGAATCAAGTTCTACGACGGCAATCTTTAGTTGTCTCTCCAACTAATGGCTTTACCAATAATGCAAAGCCTATGAATTTGCAGGTGTTCTATCATACAGAAGACTCCAGAAATTCACCAGGCTTACGATGGGGGTCAGAAATCTATGTTTG
ATTCACCTATTGATTCTCAACAAATCATCAAAATAAGGAGTAATGCTCTGTCCGACACAAAGCAATCAAGGTTTGCCATGGAGAGGCAACAGGAAAACCAACGAGCTCTTGTTAAGTGTGTAATACAAGATGTAGGTTTCAGCAACGATAAACCTGTTGCGGCCTGTATCATATATAAATGCCTTCTTCACTGGCATGCT
TTTGAAGCTGAGATAACACCTGTATTTGAGCTCATTATTCAAACTATTGGCTTAATTATCGAG
>TRINITY_DN134682_c0_g1_i20 from sample A1 / Example unspliced isoform:GTTTGCCATGGAGAGGCAACAGgtagttttttgatgccatgttcagtgaatcttacgacatttcagataatagaatctacattgcattttatcttgtcaacctgatgaattcgagcattgtcatctggcagGAAAACCAACGAGCTCTTGTTAAGTGTGTAATACAAGATGTAGGTTTCAGCAACGATAAACCTGTTGCG
GCCTGTATCATATATAAATGCCTTCTTCACTGGCATGCTTTTGAAGCTGAGATAACACCTGTATTTGAGCTCATTATTCAAACTATTGGCTTAATTATCGAGGAAAAGGATGATAATGATGCTTTGTCATATTGGCTTTCCAATACTTCAACATTGATTTTCTTACTTCAACGCAACTTGAAACCAAGTGGGCTTACAAC
AACTCCTCAACGTCGTTACCCTGGATCAGTCACTCTTATTGGGAGGATGACACAAGGGTTCAAATCACCATCAAATCATGGCTCGTTGGGAACGGGTGGAACCTTTGGTGCACAGGAGGGCATACAACAAGTGGAAGCAAAGTATCCAGCTATACTATTCAAACAACAAGTCACTACTTATCTAGAAAAAATATATGGGA
TAGTCCGAGAGAATGTGAAGAAAGATATAGGACCACTACTTAGCCTTTGTATTCAAGCACCAAGAATGTCACGCACAAGTATGAGCAAAGGATCACGTTCACCAAACATGATTGGAGCTACCCAACAAGTTTTGAGCAGTCATTGGCATAGTATTATCAAAATCCTGAACTCTTTATTGAGTAAACTCCATGCAAATCAT
GTACCTCCGCTTTTAGTTTGTAAACTCTTTACTCAAGTTTTTTCATTCATCAATGTGCAACTTTTCAACAGCCTGTTGTTACGACGGGAGTGCTGTTCATTTAGCAATGGTGAATATATAAAATCTGGAATTGCAGAACTGGAACGGTGGATATGTGAGGCTTCAGAACAATATGTAGGGACATCCTGGGATGAATTAAG
GTACATCAGGCAAGCTGTTGGATTCCTGGTCATACATCAGAAAGCAAAGAAGACTTTAGATGAAATTATGCAGGATATTTGCCCAGTGCTAACTGTTCAACAGCTTTATCGGATAAGCACCATGTATTGGGATGATAAATATGGCACACAGAGTGTATCCCGTGAGGTTTTTGGAAGCATGAAGCTGATGATGACAAAGA
GTCCTCAAAATGCCTCGACCAATACATTTCTGCTGGATGATGATACAAG