sp|P34788|RS18_ARATH ----> Small ribosomal subunit protein uS13z/uS13y/uS13x

Intron 1 GTGAGTATTT ... CTTCATTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	60	9	23	4
A2	84.62	1	4	7
A3	56.52	5	9	4
A4	56.1	9	20	3
A5	60	2	4	2
A6	75	4	21	3
A7	53.12	15	17	17
A8	60	3	5	4
A9	37.5	5	4	2
A10	87.5	1	8	6

>TRINITY_DN40503_c3_g1_i2 from sample A6 / Example spliced isoform

GGGGATAGGAGTTTTATCATTCTATGTGTATTGTCTTTCATTTTGTTCTACATTTGGTATCAGAGCCCTTATGTTCTTAAGGGCCTGGTAGTTTTAATTCTCCATGGTAGTTTTCATGAAAGGTTGAGAGGTTTGATGTGAGTAGACAATGGATCTAAGAACTGGTACGTATGACTGAAAAGGAGAATGAAAAAGAAGCC
TACACCCATAGTCCACATGTCCAGTTGGCAAAATTGAAGCATTTTCTGCAGATATCGGTCCACATATATATGGTTGTGGTCAAGGAGCAACCTTCTACAGGCAATTTCAGCGATCTGGTATTGTTATCTTCATCCGGCGTGTGAGGTGGATGGAAGAAAGAATCGCATGGCATTCAAGAAAATTGGCTGAAAATGATTTT
GATCTACCGATCCAACAATCTAGTGTGAGCCAGGAATCCACCGATCCATCAGATCCTTCATCACCGATCAGCGTGAGCCATCATCGACCAGCCTGAGCCAGCGTGAGCCATCAAACAATCTTGATCTCCAGCGACCAGCAACCAATCTAAGCAGTGTACTCTAGTTTTAATGATCAACATCAGTGATCTACTCAGTAATT
GAATTCTCGATGCAGCTTGAAGCGCCCCTCCTGTCAGCAATCAGCTATGGAATCTGGTGACAGAGATCTACTCATCTACCAGGCAACACAATCACCTCAAAATGGTTTTCGAGAAGGGCACGAGCTCGTCTCGATCTCTGCCTCGAGAGGATTCACCTCTATTACCCAATCACGCACAATCAGGGCCCCTTTTGTTTGTA
CCTAAATCCTTTGGTAATATCTGGATCGCTTGCATTTTCCAATTTGAATGAAGCATCGTCAGCACACACATTATCCCCTGGGTGAGCTTCAAGCATTCCTTATCATTCTGCCTTGATGATCAGCAAGAAGCAGCCGAATAGTTTCTGCCTCTACCTTGGCATCCTGTATAACTCTCAAAATTATTCAACGACGCACTCTT
CCTGGCAGAAAACCCTCGGAAAGCCGACTGCAGAAGTCTCGTGCATTACAGGAGCAGAAGTCAAGTCTCTCATGGATCCGGGAAGATGATTTGCGAGCCTCCAGTGTATCGCAAAAACAATAGCACAATTTGAGAAGCCTTCGAGGCTTGAATATTTGTATTTGAAAGCAAGATTTTTATATTTGAAAAAAAAAAAAATT
CAGTATCTTCATTCTAATCCTTTAGACAAAGAAGACAAAAGTGGAGCTCTTATTTAGAAGAGAGTTTCCCATGAAAATAATGAAAGAATTTTCATAAAATCTATTGAAATAAGAAAAAGGGGGCTCACTTTTGTAAGTAAAATCATTCACTTAAAAAAGGGGTTATTGGATAGTGGTTCCAATAAAAACAATTGAAAGCT
AAATTTTTTGCTCAACTAGTATTGAGAGAATATTGTTGAAAGATTGTACGGATTGGTGAGAACTTAGTTTTTTAAAGGAGGAGGAGTTTTTAAGCTTGTAAAGGGAGGTGTGAAAAAGTATCAAAGCTTTTAATAAAAGATCAATTTTTAGTGGTGGATGTGTTCTTGATCCACCCGAAATTTGAA

>TRINITY_DN40503_c3_g1_i3 from sample A6 / Example unspliced isoform:

GGGGATAGGAGTTTTATCATTCTATGTGTATTGTCTTTCATTTTGTTCTACATTTGGTATCAGAGCCCTTATGTTCTTAAGGGCCTGGTAGTTTTAATTCTCCATGGTAGTTTTCATGAAAGGTTGAGAGGTTTGATGTGAGTAGACAATGGATCTAAGAACTGGTACGTATGACTGAAAAGGAGAATGAAAAAGAAGCC
TACACCCATAGTCCACATGTCCAGTTGGCAAAATTGAAGCATTTTCTGCAGATATCGGTCCACATATATATGGTTGTGGTCAAGGAGCAACCTTCTACAGGCAATTTCAGCGATCTGGTATTGTTATCTTCATCCGGCGTGTGAGGTGGATGGAAGAAAGAATCGCATGGCATTCAAGAAAATTGGCTGAAAATGATTTg
tgagtattttttttattggttgaaaatgatttgtgagtattttatggctaaaagttttatgtcaagagcattggataccacctgagtggttcggccatccttgatatctttctgtctgtttaaaaaccaatatgggatcttggattttttttctatagaacgaatacttccagaccattttcccttgaaagagtccagta
actgtatagccatccaaatcttctttgataactttgattggatattcccgaaaatcaaaagaaagaatatgtcttctctgtgtagtgcatgaaggcatttttgcaatgttcttcattcagTGATCTACCGATCCAACAATCTAGTGTGAGCCAGGAATCCACCGATCCATCAGATCCTTCATCACCGATCAGCGTGAGCC
ATCATCGACCAGCCTGAGCCAGCGTGAGCCATCAAACAATCTTGATCTCCAGCGACCAGCAACCAATCTAAGCAGTGTACTCTAGTTTTAATGATCAACATCAGTGATCTACTCAGTAATTGAATTCTCGATGCAGCTTGAAGCGCCCCTCCTGTCAGCAATCAGCTATGGAATCTGGTGACAGAGATCTACTCATCTAC
CAGGCAACACAATCACCTCAAAATGGTTTTCGAGAAGGGCACGAGCTCGTCTCGATCTCTGCCTCGAGAGGATTCACCTCTATTACCCAATCACGCACAATCAGGGCCCCTTTTGTTTGTACCTAAATCCTTTGGTAATATCTGGATCGCTTGCATTTTCCAATTTGAATGAAGCATCGTCAGCACACACATTATCCCCT
GGGTGAGCTTCAAGCATTCCTTATCATTCTGCCTTGATGATCAGCAAGAAGCAGCCGAATAGTTTCTGCCTCTACCTTGGCATCCTGTATAACTCTCAAAATTATTCAACGACGCACTCTTCCTGGCAGAAAACCCTCGGAAAGCCGACTGCAGAAGTCTCGTGCATTACAGGAGCAGAAGTCAAGTCTCTCATGGATCC
GGGAAGATGATTTGCGAGCCTCCAGTGTATCGCAAAAACAATAGCACAATTTGAGAAGCCTTCGAGGCTTGAATATTTGTATTTGAAAGCAAGATTTTTATATTTGAAAAAAAAAAAAATTCAGTATCTTCATTCTAATCCTTTAGACAAAGAAGACAAAAGTGGAGCTCTTATTTAGAAGAGAGTTTCCCATGAAAATA
ATGAAAGAATTTTCATAAAATCTATTGAAATAAGAAAAAGGGGGCTCACTTTTGTAAGTAAAATCATTCACTTAAAAAAGGGGTTATTGGATAGTGGTTCCAATAAAAACAATTGAAAGCTAAATTTTTTGCTCAACTAGTATTGAGAGAATATTGTTGAAAGATTGTACGGATTGGTGAGAACTTAGTTTTTTAAAGGA
GGAGGAGTTTTTAAGCTTGTAAAGGGAGGTGTGAAAAAGTATCAAAGCTTTTAATAAAAGATCAATTTTTAGTGGTGGATGTGTTCTTGATCCACCCGAAATTTGAA

Intron 2 GTGAGTATTT ... CTCTGTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	62.79	8	23	4
A2	71.43	2	4	6
A3	64.71	3	9	2
A4	48.94	12	20	3
A5	63.64	2	4	3
A6	69.7	5	21	2
A7	41.03	23	17	15
A8	77.78	1	5	2
A9	75	1	4	2
A10	58.33	5	8	6

>TRINITY_DN46214_c1_g3_i4 from sample A7 / Example spliced isoform

TCTATGTGTATTGTCTTTCATTTTGTTCTACATTTGGTATCAGAGCCCTTATGTTCTTAAGGGCCTGGTAGTTTTAATTCTCCATGGTAGTTTTCATGAAAGGTTGAGAGGTTTGATGTGAGTAGACAATGGATCTAAGAACTGGTACGTATGACTGAAAAGGAGAATGAAAAAGAAGCCTACACCCATAGTCCACATGT
CCAGTTGGCAAAATTGAAGCATTTTCTGCAGATATCGGTCCACATATATATGGTTGTGGTCAAGGAGCAACCTTCTACAGGCAATTTCAGCGATCTGGTATTGTTATCTTCATCCGGCGTGTGAGGTGGATGGAAGAAAGAATCGCATGGCATTCAAGAAAATTGGCTGAAAATGATTTTGCATGAAGGCATTTTTGCAA
TGTTCTTCATTCAGTGATCTACCGATCCAACAATCTAGTGTGAGCCAGGAATCCACCGATCCATCAGATCCTTCATCACCGATCAGCGTGAGCCATCATCGACCAGCCTGAGCCAGCGTGAGCCATCAAACAATCTTGATCTCCAGCGACCAGCAACCAATCTAAGCAGTGTACTCTAGTTTTAATGATCAACATCAGTG
ATCTACTCAGTAATTGAATTCTCGATGCAGCTTGAAGCGCCCCTCCTGTCAGCAATCAGCTATGGAATCTGGTGACAGAGATCTACTCATCTACCAGGCAACACAATCACCTCAAAATGGTTTTCGAGAAGGGCAC

>TRINITY_DN46214_c1_g3_i5 from sample A7 / Example unspliced isoform:

TCTATGTGTATTGTCTTTCATTTTGTTCTACATTTGGTATCAGAGCCCTTATGTTCTTAAGGGCCTGGTAGTTTTAATTCTCCATGGTAGTTTTCATGAAAGGTTGAGAGGTTTGATGTGAGTAGACAATGGATCTAAGAACTGGTACGTATGACTGAAAAGGAGAATGAAAAAGAAGCCTACACCCATAGTCCACATGT
CCAGTTGGCAAAATTGAAGCATTTTCTGCAGATATCGGTCCACATATATATGGTTGTGGTCAAGGAGCAACCTTCTACAGGCAATTTCAGCGATCTGGTATTGTTATCTTCATCCGGCGTGTGAGGTGGATGGAAGAAAGAATCGCATGGCATTCAAGAAAATTGGCTGAAAATGATTTgtgagtattttttttattggt
tgaaaatgatttgtgagtattttatggctaaaagttttatgtcaagagcattggataccacctgagtggttcggccatccttgatatctttctgtctgtttaaaaaccaatatgggatcttggattttttttctatagaacgaatacttccagaccattttcccttgaaagagtccagtaactgtatagccatccaaatc
ttctttgataactttgattggatattcccgaaaatcaaaagaaagaatatgtcttctctgtgtagTGCATGAAGGCATTTTTGCAATGTTCTTCATTCAGTGATCTACCGATCCAACAATCTAGTGTGAGCCAGGAATCCACCGATCCATCAGATCCTTCATCACCGATCAGCGTGAGCCATCATCGACCAGCCTGAGCC
AGCGTGAGCCATCAAACAATCTTGATCTCCAGCGACCAGCAACCAATCTAAGCAGTGTACTCTAGTTTTAATGATCAACATCAGTGATCTACTCAGTAATTGAATTCTCGATGCAGCTTGAAGCGCCCCTCCTGTCAGCAATCAGCTATGGAATCTGGTGACAGAGATCTACTCATCTACCAGGCAACACAATCACCTCA
AAATGGTTTTCGAGAAGGGCAC

Intron 3 GTGAGTATTT ... CTCGATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	55.56	10	23	2
A2	100	0	4	10
A3	83.33	1	9	1
A4	63.16	7	20	4
A5	60	2	4	2
A6	87.5	2	21	7
A7	56.52	10	17	9
A8	86.67	1	5	8
A9	81.82	1	4	5
A10	87.5	1	8	6

>TRINITY_DN46214_c1_g3_i3 from sample A7 / Example spliced isoform

TCTATGTGTATTGTCTTTCATTTTGTTCTACATTTGGTATCAGAGCCCTTATGTTCTTAAGGGCCTGGTAGTTTTAATTCTCCATGGTAGTTTTCATGAAAGGTTGAGAGGTTTGATGTGAGTAGACAATGGATCTAAGAACTGGTACGTATGACTGAAAAGGAGAATGAAAAAGAAGCCTACACCCATAGTCCACATGT
CCAGTTGGCAAAATTGAAGCATTTTCTGCAGATATCGGTCCACATATATATGGTTGTGGTCAAGGAGCAACCTTCTACAGGCAATTTCAGCGATCTGGTATTGTTATCTTCATCCGGCGTGTGAGGTGGATGGAAGAAAGAATCGCATGGCATTCAAGAAAATTGGCTGAAAATGATTTCTTGAAGCGCCCCTCCTGTCA
GCAATCAGCTATGGAATCTGGTGACAGAGATCTACTCATCTACCAGGCAACACAATCACCTCAAAATGGTTTTCGAGAAGGGCAC

>TRINITY_DN46214_c1_g3_i5 from sample A7 / Example unspliced isoform:

TCTATGTGTATTGTCTTTCATTTTGTTCTACATTTGGTATCAGAGCCCTTATGTTCTTAAGGGCCTGGTAGTTTTAATTCTCCATGGTAGTTTTCATGAAAGGTTGAGAGGTTTGATGTGAGTAGACAATGGATCTAAGAACTGGTACGTATGACTGAAAAGGAGAATGAAAAAGAAGCCTACACCCATAGTCCACATGT
CCAGTTGGCAAAATTGAAGCATTTTCTGCAGATATCGGTCCACATATATATGGTTGTGGTCAAGGAGCAACCTTCTACAGGCAATTTCAGCGATCTGGTATTGTTATCTTCATCCGGCGTGTGAGGTGGATGGAAGAAAGAATCGCATGGCATTCAAGAAAATTGGCTGAAAATGATTTgtgagtattttttttattggt
tgaaaatgatttgtgagtattttatggctaaaagttttatgtcaagagcattggataccacctgagtggttcggccatccttgatatctttctgtctgtttaaaaaccaatatgggatcttggattttttttctatagaacgaatacttccagaccattttcccttgaaagagtccagtaactgtatagccatccaaatc
ttctttgataactttgattggatattcccgaaaatcaaaagaaagaatatgtcttctctgtgtagtgcatgaaggcatttttgcaatgttcttcattcagtgatctaccgatccaacaatctagtgtgagccaggaatccaccgatccatcagatccttcatcaccgatcagcgtgagccatcatcgaccagcctgagcc
agcgtgagccatcaaacaatcttgatctccagcgaccagcaaccaatctaagcagtgtactctagttttaatgatcaacatcagtgatctactcagtaattgaattctcgatgcagCTTGAAGCGCCCCTCCTGTCAGCAATCAGCTATGGAATCTGGTGACAGAGATCTACTCATCTACCAGGCAACACAATCACCTCA
AAATGGTTTTCGAGAAGGGCAC

Intron 4 GTGAGTATTT ... CTTCATTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	60	9	23	4
A2	84.62	1	4	7
A3	56.52	5	9	4
A4	56.1	9	20	3
A5	60	2	4	2
A6	75	4	21	3
A7	53.12	15	17	17
A8	60	3	5	4
A9	37.5	5	4	2
A10	87.5	1	8	6

>TRINITY_DN117758_c0_g9_i2 from sample A3 / Example spliced isoform

CTTATGTTCTTAAGGGCCTGGTAGTTTTAATTCTCCATGGTAGTTTTCATGAAAGGTTGAGAGGTTTGATGTGAGTAGCCAATGGATCTAAGAACTGGTACGTATGACTGAAAAGGAGAATGAAAAAGAAGCCTACACCCATAGTCCACATGTCCAGTTGGCAAAATTGAAGCATTTTCTGCAGATATCGGTCCACATAT
ATATGGTTGTGGTCAAGGAGCAACCTTCTACAGGCAATTTCAGCGATCTGGTATTGTTATCTTCATCCGGCGTGTGAGGTGGATGGAAGAAAGAATCGCATGGCATTCAAGAAAATTGGCTGAAAATGATTTTGATCTACCGATCCAACAATCTAGTGTGAGCCAGGAATCCACCGATCCATCAGATCCTTCATCACCGA
TCAGCGTGAGCCATCATCGATCAGCCTGAGCCAGCGTGAGCCATCAAACAATCTTGATCTCCAGCGACCAGCAACCAATCTAAGCAGTGTACTCTAGTTTTAATGATCAACATCAGTGATCTACTCAGTAATTGAATTCTCGATGCAGCTTGAAGCGCCCCTCCTGTCAGCAATCAGCTATGGAATCTGGTGACAGAGAT
CTACTCATCTACCAGGCAACACAATCACCTCAAAATGGTTTTCGAGAAGGGCACGAGCTCATCTCGATCTCTGCCTCGAGAGGATTCACCTCTATTACCCAATCACGCACAATCAGGGCCCC

>TRINITY_DN117758_c0_g9_i1 from sample A3 / Example unspliced isoform:

CTTATGTTCTTAAGGGCCTGGTAGTTTTAATTCTCCATGGTAGTTTTCATGAAAGGTTGAGAGGTTTGATGTGAGTAGCCAATGGATCTAAGAACTGGTACGTATGACTGAAAAGGAGAATGAAAAAGAAGCCTACACCCATAGTCCACATGTCCAGTTGGCAAAATTGAAGCATTTTCTGCAGATATCGGTCCACATAT
ATATGGTTGTGGTCAAGGAGCAACCTTCTACAGGCAATTTCAGCGATCTGGTATTGTTATCTTCATCCGGCGTGTGAGGTGGATGGAAGAAAGAATCGCATGGCATTCAAGAAAATTGGCTGAAAATGATTTgtgagtattttattttattggttgaaaatgatttgtgagtattttatggctaaaagttttatgtcaag
agcattggataccacctgagtggttcggccatccttgatatctttctgtctgtttaaaaaccaatatgggatcttggaatttttttctatagaacgaatacttccagaccattttcccttgaaagagtccagtaactgtatagccatccaaatcttctttgataactttgattggatattcccgaaaatcaaaagaaaga
atatgtcttctctgtgtagtgcatgaaggcatttttgcaatgttcttcattcagTGATCTACCGATCCAACAATCTAGTGTGAGCCAGGAATCCACCGATCCATCAGATCCTTCATCACCGATCAGCGTGAGCCATCATCGATCAGCCTGAGCCAGCGTGAGCCATCAAACAATCTTGATCTCCAGCGACCAGCAACCAA
TCTAAGCAGTGTACTCTAGTTTTAATGATCAACATCAGTGATCTACTCAGTAATTGAATTCTCGATGCAGCTTGAAGCGCCCCTCCTGTCAGCAATCAGCTATGGAATCTGGTGACAGAGATCTACTCATCTACCAGGCAACACAATCACCTCAAAATGGTTTTCGAGAAGGGCACGAGCTCATCTCGATCTCTGCCTCG
AGAGGATTCACCTCTATTACCCAATCACGCACAATCAGGGCCCC