NA ----> NA

Intron 1 GTTAGTTTGG ... CGCATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	90	3	27	8
A2	92	4	46	3
A3	74	13	37	19
A4	83.33	7	35	37
A5	95	1	19	9
A6	80.83	46	194	52
A7	88.39	26	198	51
A8	89.29	24	200	21
A9	92.38	23	279	48
A10	87.65	21	149	47

>TRINITY_DN48273_c1_g1_i13 from sample A10 / Example spliced isoform

CTTGAAGACTTAGAAAATATTGACTAAAATGTTGTTACTGTCAATGTAACTTTAACACCTCGAAAATATTTACAGTTATTTGCCCGGGACACACCACAGCTGGTTTACATTGCATGGCAGAAGATGGTTGGCTTGGATAGGTTTCTTTTGTTTTCAGAGATCTCAAATGAAATAATGTTGTTGCTGGTTATCACCGATGA
TACCGATGTGATGCTCAAAAAGAGAAGAGGACCGGTGTACTGAACACTAATGTATTGCCCAATACTGAACACTAATGTATTGCCCAATACTGAATACTAGTGTACTGCCGAATTTTATTAATTATTTATTTTCAGGTTTACGGCAG

>TRINITY_DN48273_c1_g1_i1 from sample A10 / Example unspliced isoform:

CTTGAAGACTTAGAAAATATTGACTAAAATGTTGTTACTGTCAATGTAACTTTAACACCTCGAAAATATTTACAGTTATTTGCCCGGGACACACCACAGCTGGTTTACATTGCATGGCAGAAGgttagtttggatggattttaggtctcgaatgacggaacaattgtagatggtttagattggacggattgcttcgtctt
taagggttcctcggatagtttggatggatttcaggtctctgaaagacattgtaatagttatttgcatcgcattgcagATGGTTGGCTTGGATAGGTTTCTTTTGTTTTCAGAGATCTCAAATGAAATAATGTTGTTGCTGGTTATCACCGATGATACCGATGTG

Intron 2 GTCTCATCCG ... TGGATTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	21.94	32.4	8.4	10.2
A2	18.14	56.6	13.6	12.4
A3	37.7	33.2	20.6	20.8
A4	29.59	29	10	16.2
A5	11.18	20.4	2.8	2.4
A6	33.73	201.8	90.6	120.6
A7	35.75	220.8	120.4	133.6
A8	36.45	243.4	142.8	143.8
A9	29.1	311.2	128	136
A10	34.03	179.2	86.4	105.8

>TRINITY_DN133225_c0_g2_i12 from sample A1 / Example spliced isoform

GTAGTGGAGGAGGAGCAAAGCGATGATATAGACCTGATAGACCTGAATTTTATGCGATGATATAGACCTGATAGACCTGAATTTTATGCGATGATATAGACCTGATAGACCTGAATTTTATGAGGATGATAAAGACCTGAAGAGAGGGTTGTGGAGAACTGAATTTCTCGTCTGTAACAATGAAACCATCTGCTCTGGCT
GTATCTTCTCGAAAATTTTGTTACTGTCAGTGTAACTTTAACACCTCGAAAATATTTACAGTTATTTGCCCGGGACACACCACAGCTGGTTTACATTGTATGGCAGAAGGTTAGTTTGGATGGATTTCAGGTCTCGAATGACAGAATCAATTGTAGATGGTTTATATTGGACGGATTTCTTCGTCTTTAAGGGTTCCTCG
GATAGTTTGGATGGATTTCAGGTCTCGAATGACAGAACAATTGTAGATGGTTTAGATTGTCATTGGACGGATTTTTTCGTCTTTAAGGGTTCCTCGGATGAAAGACATTGTAATAGTTATTTGTATATTTGTATTTGCATTGCATTGCAGATGGTTGGCTTGGATGGGTTTCTTTCGTTTTCAGAGATCTCAAATGAAAT
AATGTTGTTGTTGCTGGTTATCACCGATGATACCGATGTGGTGCTTAAACAGAGAAGAGGATCGGTGTACTGAATACCGAATTTTATTAATTATTTATTTTCAGGTTTACGGCTTCATCCTATTAATTTTTTTCGTGC

>TRINITY_DN133225_c0_g2_i16 from sample A1 / Example unspliced isoform:

TTATGATCGGGAAAAGGCGGTTCCCTTGGAGGATCGATTAGCTATGCATCGAGAGAGACAAAGGTAGTGGAGGAGGAGCAAAAGCGATGATATAGACCTGATAGACCTGAATTTTATGCGATGATACTGAATTTTATGAGGATGATATAGACCTGAATTTTATGAGGATTGTTGAGAACTGAATTTCTCGTCTGTAACAA
TGAAACCATCTGCTCTGGCTGTATCTTCTCGAAAATTTTGTTACTGTCAGTGTAACTTTAACACCTCGAAAATATTTACAGTTATTTGCCCGGGACACACCACAGCTGGTTTACATTGTATGGCAGAAGGTTAGTTTGGATGGATTTCAGGTCTCGAATGACAGAATCAATTGTAGATGGTTTATATTGGACGGTGGTTT
ATATTGGACGATTTCTTCGTCTTTAAGGGTTCCTCGGATAGTTTGGATGGATTTCAGgtctcatccgagtttggatggatttcagGTCTCGAATGACAGAACAATTGTAGATGGTTTAGATTGTCATTGGACGGATTTTTTCGTCTTTAAGGGTTCCTCGGATGAAAGACATTGTAATAGTTATTTGTATATTTGTATTT
GCATTGCATTGCAGATGGTTGGCTTGGATGGGTTTCTTTCGTTTTCAGAGATCTCAAATGAAATAATGTTGTTGTTGCTGGTTATCACCGATGATACCGATGTGGTGCTTAAACAGAGAAGAGGATCGGTGTACTGAATACCGAATTTTATTAATTATTTATTTTCAGGTTTACGGCTTCATCCTATTAATTTTTTTCGT
GCTTATCCCGCTCTCTCATATTTCTTTGCATCATACTAAAGCTAATTTAATTGAATATTGCTCTGATAATGCTCCAATAACCCTAGATATAAAGTTTATCCGGTCTAATAACCCTAGTTATTGAATTTCCA