NA ----> NA
Intron 1 GCTTTAGGGC ... GAGAGTAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.82 | 38.2 | 6.5 | 17 |
| A2 | 20.8 | 30.5 | 6.5 | 8 |
| A3 | 22.56 | 17.2 | 4.5 | 5 |
| A4 | 30.64 | 27.2 | 2 | 12 |
| A5 | 32 | 17 | 1 | 8 |
| A6 | 34.33 | 44 | 4.5 | 23 |
| A7 | 37.77 | 59.3 | 4 | 36 |
| A8 | 41.82 | 55.7 | 7 | 40 |
| A9 | 33.39 | 59.8 | 7.5 | 30 |
| A10 | 33.03 | 48.7 | 12 | 24 |
>TRINITY_DN42011_c1_g1_i7 from sample A8 / Example spliced isoformAATCACAATAAAAAAAAATCACACCTAGCCCCAACTACCCACTCCATTCACTAAAAATTAAGAAATATTTATTATTCATGACAAACTCCATGGTCCGCATTGGCGAGGGAAAAACGAACAGCGTGTTTGAATCAGTTGAACCAGAGAGTCTAGTTATCGTGATTGCCGCACAAATTTCACGATGTTTTCATGGTTTTCCG
GCGATGTGGACCGGTGATTGCCCGTGCTATTTACCGGTCACGTGAGGCTTTCTAGGGTTTGCTTTCCGATTGTCAACACCGCCACTGCTACTACAACTGGAAGACGAGGAGATTCTGTATAACACGAAGTTTGCACTTGGACTTATAGTGGTACTCAGCACTATAGATTTCAATATTATGAGGTCGTCTGAGAAAAATGG
AAAAAGTCGGAAGCCTGCTTTTGTACAGAATTCAATGCAAAATGTTCCTCAAGAGGGGCTGAACTGGGTTGTTTTATTGGGTGGGGCTATTGTGAGCGCCTTGTCAGTTACACTTGGGCGTAAGTTGAAGCAGGCCCTTGAGATTAACCGTGAAAGAGATACGAAAGCACTAAATGAGCCAGAAGGAAGCTCTGCTACAA
ACCGAATTTCAGGGGTTCATCCCTTGCGCTCAAATCTGGATTACTGCAGGCAGGGTGGAGTAGTTTGCATTCATTGTTTTCCTGGTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACATACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATT
TATTCTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAATAGCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAGGGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCA
AGTTCAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAACAGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATGCAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATT
ATACAATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGGGAGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGATTAGTTGAAAGTTTCCGAAGATGAAATAAAAGCATTGGT
TCAAGAAGAGAAGCCTAAACTAAAGGTTTAGCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGCACAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGAAGAGCAAGGATGACAAGGTTGTACAAGGCTGCGGTGTACTTCTT
TTGTTTCTTGTAAATATTCTACGATGTTCCTGCTTGGGTTGTATATCTATAAAGAGATCATGATTCTTCTATGGTTTGAGGTATCTGTGGTTTTCAAATTTGGAATTTGTGCTTGCATGTGAATCACTAATCCTGTGAGATTTTTGTGATGCATCTTCCTTACAATATTCTATTCCTCTCTATTTGACAATTCTTTCCCT
CTGGCATTTTTTTTGCAGGATCAAGGCTGTAATGCTATTTTAGAGATTATATTAGAGTTGAGGCCACTTGACACATGATTATAATTTAAGATATGCTCCTAATTAGATTATCAGTTGGCCAAGCAGTCTTAATATTTTAGATAAATTTTGATTGGAAGAATTATCTATTTTGCACAGGATTTTGTGGAGGAAAAGTAGAA
ACAAAAATGACTAAAGCATGTGATACAGATTTGTGAGTACTCTAATTAATACCTGATGATGTACTTTCAGAAATTTATTTCCACCCACTACATTTGTGTTTCCCCAGATATTTTAATTTTAATTGAACATGAAACACCAGCAAATATCAAATATCAAGAATATATAATTGATGTAAAGTTTCATTGCAACTTTGTTCAAT
GGCAAGTTCGACCGACGGCTTTCATACCCATTGTGGTCTGTGTTATCTGCATGACATTATTTTCAAAGGGATTAGGCTAATTGCATGTCCATGCGATTTTGGCAGAATAAACCCCATCAGACCACTGACTTAAAACAAAGTTGAAGGTCCAATCTTTGTGGTGCAGC
>TRINITY_DN42011_c1_g1_i8 from sample A8 / Example unspliced isoform:AATCACAATAAAAAAAAATCACACCTAGCCCCAACTACCCACTCCATTCACTAAAAATTAAGAAATATTTATTATTCATGACAAACTCCATGGTCCGCATTGGCGAGGGAAAAACGAACAGCGTGTTTGAATCAGTTGAACCAGAGAGTCTAGTTATCGTGATTGCCGCACAAATTTCACGATGTTTTCATGGTTTTCCG
GCGATGTGGACCGGTGATTGCCCGTGCTATTTACCGGTCACGTGAGGCTTTCTAGGGTTTGCTTTCCGATTGTCAACACCGCCACTGCTACTACAACTGGAAGACGAGGAGATTCTGTATAACACGAAGTTTGCACTTGGACTTATAGTGGTACTCAGCACTATAGATTTCAATATTATGAGGTCGTCTGAGAAAAATGG
AAAAAGTCGGAAGCCTGCTTTTGTACAGAATTCAATGCAAAATGTTCCTCAAGAGGGGCTGAACTGGGTTGTTTTATTGGGTGGGGCTATTGTGAGCGCCTTGTCAGTTACACTTGGGCGTAAGTTGAAGCAGGCCCTTGAGATTAACCGTGAAAGAGATACGAAAGCACTAAATGAGCCAGGTATATGCTGTCCTTAAC
ACTTTAATTACCAACTAAGGTTGTAGCATTCTGTTTGAACCACTATTGGACATTATAACTATGCATGCAGAAGGAAGCTCTGCTACAAACCGAATTTCAGGGGTTCATCCCTTGCGCTCAAATCTGGATTACTGCAGGCAGGGTGGAGTAGTTTGCATTCATTGTTTTCCTGgctttagggcagcaaatagcaatcacac
atataacatagacacaaaagtttttggtcaatgcgaccctgctaaaacccttgcgggaaaacaagtgagagagagtagagGTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACATACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATTTATT
CTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAATAGCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAGGGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCAAGTT
CAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAACAGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATGCAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATTATAC
AATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGGGAGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGGTATGAAATGAAAACTCCAGATGTAAAGGTGTGGAATCTATTAGAGGACCTACCCTGCATTTCGTTGAACAGAAATGGAG
AAATGACTAAACATGAAGATACCCTTGAAAGCGTGAAAGACATGGAGAGAGAATTAGTTGAACTCAAGCGGTTAGTTAGTGGAAAAAATTATCTTCTAGAGGAATATGAGAACCAACGGGTGGAACTATCCACTCAGCTGAAGGAGCTTCAGCTTAAATTGGGTACTCAGGTGGCAAATGTACTATAGTTTTTGCGGAAT
ATCTAGGAGAGGCTTTTATTTTCAATTTTGGTGCCTCTCCATACACATATTGTTCTGTGTGTTTATATCCCTATTCTGGAAATTGCATTTTTATAACAGTTCACTGACGTGGTTTCAGTATGAGTGCCAATTTTCTGTTGGACAAAATCTTCACTGGGTATAGGCAGGAGCTATGCCTCAAACTTTCCACAAGCAGCAAA
ATGTTCAAATATCATTGATGATTTCATTTTGTTCACTCTAAAATTTTACGTCTAAAACATTGTTCAATCACTTGTTTTCCTGTATAATTTTGTTAGCGCGACTTGCTTCTTATATGACAAGATTCAAAATATAAAGGGGTTGCAAGGAGATTTGGCGC
Intron 2 GTATATGCTG ... ATGCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.72 | 27.8 | 15 | 14.6 |
| A2 | 23.46 | 26.6 | 10 | 6.4 |
| A3 | 29.78 | 28.2 | 15.7 | 8.3 |
| A4 | 24.32 | 26.6 | 11 | 6.1 |
| A5 | 38.51 | 16 | 12 | 8.1 |
| A6 | 23.86 | 46.6 | 21.3 | 8.1 |
| A7 | 29.86 | 53.6 | 31 | 14.7 |
| A8 | 28.8 | 31 | 16 | 9.3 |
| A9 | 24.31 | 53.4 | 22 | 12.4 |
| A10 | 35.19 | 38.8 | 28 | 14.1 |
>TRINITY_DN118674_c0_g1_i8 from sample A1 / Example spliced isoformGCCACGGTTAAGATGGATCTATGCTGGTGATTATACCAATGATCTTTTCCTTGGAAGAAACTCTCATGACTCCAAATCCTTTTCCAGTTAATTAGGATTGTTACCAGTGTATTGTTGGGTTTAGTCAATAAATCTTACATCCCTGCACTGTCTCAAATGCTTGCTTTGCAGTTTGCACTTGGACTTATAGTGGTACTCAG
CACTATAGATTTCAATATTATGAGGTCGTCTGAGAAAAATGGAAAAAGTCGGAAGCCTGCTTTTGTACAGAATTCAATGCAAAATGTTCCTCAAGAGGGGCTGAACTGGGTTGTTTTATTGGGTGGGGCTATTGTGAGCGCCTTGTCAGTTACACTTGGGCGTAAGTTGAAGCAGGCCCTTGAGATTAACCGCGAAAGAG
ATACGAAAGCACTAAATGAGCCAGAAGGAAGCTCTGCTACAAACCGAACTTCAGGGGTTCATCCCTTGCGCTCAAATCTGGATTACTGCAGGCAGGGTGGAGTAGTTTGCATTCATTGTTTTCCTGGTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACAT
ACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATTTATTCTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAATAGCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAG
GGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCAAGTTCAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAACAGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATG
CAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATTATACAATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGGGAGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGGTATGAAATGAAAACTCCAGATGTAAAGGTGTGG
AATCTATTAGAGGACCTACCCTGCATTTCGTTGAACAGAAATGGAGAAATGACTAAACATGAAGATACCCTTGAAAGCGTGAAAGACATGGAGAGAGAATTAGTTGAACTCAAGCGGTTAGTTAGTGGAAAAAATTATCTTCTAGAGGAATATGAGAACCAACGGGTGGAACTATCCACTCAGCTGAAGGAGCTTCAGCT
TAAATTGGGTACTCAGGTGGCAAATGTACTATAGTTTTTGCGGAATATCTAGGAGAGGCTTTTATTTTCAATTTTGGTGCCTCTCCATACACATATTGTTCTGTGTGTTTATATCCCTATTCTGGAAATTGCATTTTTATAACAGTTCACTGACGTGGTTTCAGTATGAGTGCCAATTTTCTGTTGGACAAAATCTTCAC
TGGGTATAGGCAGGAGCTATGCCTCAAACTTTCCACAAGCAGCAAAATGTTCAAATATCATTGATGATTTCATTTTGTTCACTCTAAAATTTTACGTCTAAAACATTGTTCAATCACTTGTTTTCCTGTATAATTTTGTTAGCGCGACTTGCTTCTTATATGACAAGATTCAAAATATAAAGGGGTTGCAAGGAGATTTG
GTGCCATATGATGTTTTAGATTGGGATGTATTTGGAAAAGTGTCCTGCAAGGAGATTAG
>TRINITY_DN118674_c0_g1_i9 from sample A1 / Example unspliced isoform:GCCACGGTTAAGATGGATCTATGCTGGTGATTATACCAATGATCTTTTCCTTGGAAGAAACTCTCATGACTCCAAATCCTTTTCCAGTTAATTAGGATTGTTACCAGTGTATTGTTGGGTTTAGTCAATAAATCTTACATCCCTGCACTGTCTCAAATGCTTGCTTTGCAGTTTGCACTTGGACTTATAGTGGTACTCAG
CACTATAGATTTCAATATTATGAGGTCGTCTGAGAAAAATGGAAAAAGTCGGAAGCCTGCTTTTGTACAGAATTCAATGCAAAATGTTCCTCAAGAGGGGCTGAACTGGGTTGTTTTATTGGGTGGGGCTATTGTGAGCGCCTTGTCAGTTACACTTGGGCGTAAGTTGAAGCAGGCCCTTGAGATTAACCGCGAAAGAG
ATACGAAAGCACTAAATGAGCCAGgtatatgctgtccttaacactttaattaccaactaaggttgtagcattctgtttgaaccactattggacattataactatgcatgcagAAGGAAGCTCTGCTACAAACCGAACTTCAGGGGTTCATCCCTTGCGCTCAAATCTGGATTACTGCAGGCAGGGTGGAGTAGTTTGCAT
TCATTGTTTTCCTGGTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACATACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATTTATTCTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATT
TACAGCAGTCCAATAGCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAGGGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCAAGTTCAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAG
CTTGATGCAGCAAACAGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATGCAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATTATACAATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGA
ACTATGCAACGGGGGAGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGGTATGAAATGAAAACTCCAGATGTAAAGGTGTGGAATCTATTAGAGGACCTACCCTGCATTTCGTTGAACAGAAATGGAGAAATGACTAAACATGAAGATACCCTTGAAAGCGTGAAAGACATGGAGAGAGAATTAGTTGAACTCA
AGCGGTTAGTTAGTGGAAAAAATTATCTTCTAGAGGAATATGAGAACCAACGGGTGGAACTATCCACTCAGCTGAAGGAGCTTCAGCTTAAATTGGGTACTCAGGTGGCAAATGTACTATAGTTTTTGCGGAATATCTAGGAGAGGCTTTTATTTTCAATTTTGGTGCCTCTCCATACACATATTGTTCTGTGTGTTTAT
ATCCCTATTCTGGAAATTGCATTTTTATAACAGTTCACTGACGTGGTTTCAGTATGAGTGCCAATTTTCTGTTGGACAAAATCTTCACTGGGTATAGGCAGGAGCTATGCCTCAAACTTTCCACAAGCAGCAAAATGTTCAAATATCATTGATGATTTCATTTTGTTCACTCTAAAATTTTACGTCTAAAACATTGTTCA
ATCACTTGTTTTCCTGTATAATTTTGTTAGCGCGACTTGCTTCTTATATGACAAGATTCAAAATATAAAGGGGTTGCAAGGAGATTTGGTGCCATATGATGTTTTAGATTGGGATGTATTTGGAAAAGTGTCCTGCAAGGAGATTAG
Intron 3 GTTGTACAAG ... TTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.34 | 3 | 32 | 3 |
| A2 | 93.33 | 1 | 21 | 7 |
| A3 | 79.95 | 2 | 15 | 1 |
| A4 | 85.19 | 2 | 20 | 3 |
| A5 | 75 | 1 | 3 | 3 |
| A6 | 83.37 | 16 | 85 | 75.5 |
| A7 | 92.98 | 8 | 113.5 | 99 |
| A8 | 86.3 | 33 | 184 | 232 |
| A9 | 86.47 | 17 | 94.5 | 123 |
| A10 | 88.03 | 6 | 46.5 | 42 |
>TRINITY_DN42011_c1_g1_i4 from sample A8 / Example spliced isoformGAAAGTGAAGCTCAACAATGTTTCAGACTCAACGATATACTCAATAAAGAATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGATTAGTTGAAAGTTTCCGAAGATGAAATAAAAGCATTGGTTCAAGAAGAGAAGCCTAAACTAAAGGTTTAGCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGCA
CAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGAAGAGCAAGGATGACAAGGATCAAGGCTGTAATGCTATTTTAGAGATTATATTAGAGTTGAGGCCACTTGACACATGATTATAATTTAAGATATGCTCCTAATTAGATTATCAGTTGGC
CAAGCAGTCTTAATATTTTAGATAAATTTTGATTGGAAGAATTATCTATTTTGCACAGGATTTTGTGGAGGAAAAGTAGAAACAAAAATGACTAAAGCATGTGATACAGATTTGTGAGTACTCTAATTAATACCTGATGATGTACTTTCAGAAATTTATTTCCACCCACTACATTTGTGTTTCCCCAGATATTTTAATTT
TAATTGAACATGAAACACCAGCAAATATCAAATATCAAGAATATATAATTGATGTAAAGTTTCATTGCAACTTTGTTCAATGGCAAGTTCGACCGACGGCTTTCATACCCATTGTGGTCTGTGTTATCTGCATGACATTATTTTCAAAGGGATTAGGCTAATTGCATGTCCATGCGATTTTGGCAGAATAAACCCCATCA
GACCACTGACTTAAAACAAAGTTGAAGGTCCAATCTTTGTGGTGCAGC
>TRINITY_DN42011_c1_g1_i1 from sample A8 / Example unspliced isoform:AGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACATACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATTTATTCTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAATAGCTCAGAATCAGTATGTACA
TCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAGGGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCAAGTTCAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAACAGGGAGTCATTTGGAACAGA
AAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATGCAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATTATACAATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGGGAGCTCAAAGATTTCATGAAC
AGAAGCTGCAGGAACAGAGATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGATTAGTTGAAAGTTTCCGAAGATGAAATAAAAGCATTGGTTCAAGAAGAGAAGCCTAAACTAAAGGTTTAGGTATAATTATCCTGGCAGTGCTGCACTTTTTAAAGCTTGATAGCCTTGTAACATCATTATGCTTTCTACTGTTT
CTGAACAAGTATTTGCACTTTTCATCTGGTGTTTTACCTGTCGAAAACTTGTAGCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGCACAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGAAGAGCAAGGATGACAAGgttg
tacaaggctgcggtgtacttcttttgtttcttgtaaatattctacgatgttcctgcttgggttgtatatctataaagagatcatgattcttctatggtttgaggtatctgtggttttcaaatttggaatttgtgcttgcatgtgaatcactaatcctgtgagatttttgtgatgcatcttccttacaatattctattcct
ctctatttgacaattctttccctctggcattttttttgcagGATCAAGGCTGTAATGCTATTTTAGAGATTATATTAGAGTTGAGGCCACTTGACACATGATTATAATTTAAGATATGCTCCTAATTAGATTATCAGTTGGCCAAGCAGTCTTAATATTTTAGATAAATTTTGATTGGAAGAATTATCTATTTTGCACAG
GATTTTGTGGAGGAAAAGTAGAAACAAAAATGACTAAAGCATGTGATACAGATTTGTGAGTACTCTAATTAATACCTGATGATGTACTTTCAGAAATTTATTTCCACCCACTACATTTGTGTTTCCCCAGATATTTTAATTTTAATTGAACATGAAACACCAGCAAATATCAAATATCAAGAATATATAATTGATGTAAA
GTTTCATTGCAACTTTGTTCAATGGCAAGTTCGACCGACGGCTTTCATACCCATTGTGGTCTGTGTTATCTGCATGACATTATTTTCAAAGGGATTAGGCTAATTGCATGTCCATGCGATTTTGGCAGAATAAACCCCATCAGACCACTGACTTAAAACAAAGTTGAAGGTCCAATCTTTGTGGTGCAGC
Intron 4 GTATATGCTG ... ATGCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.63 | 28 | 15 | 16 |
| A2 | 26.03 | 27 | 10 | 9 |
| A3 | 30 | 28 | 16 | 8 |
| A4 | 26.03 | 27 | 11 | 8 |
| A5 | 39.62 | 16 | 12 | 9 |
| A6 | 26.94 | 47 | 21 | 13.7 |
| A7 | 30.77 | 54 | 31 | 17 |
| A8 | 31.87 | 31 | 16 | 13 |
| A9 | 27.19 | 54 | 23 | 17.3 |
| A10 | 35.54 | 39 | 28 | 15 |
>TRINITY_DN110161_c0_g1_i4 from sample A2 / Example spliced isoformTAGCCCCAACTACCCACTCCATTCACTAAAAATTAAGAAATATTTATTATTCATGACAAACTCCATGGTCCGCATTGGCGAGGGAAAAACGAACAGCGTGTTTGAATCGGTTGAACCAGAGAGTCTAGTTATCGTGATTGCCGCACAAATTTCACGATGTTTTCATGGTTTTCCGGCGATGTGGACCGGTGATTGCCCGT
GCTATTTACCGGTCACGTGAGGCTTTCTAGGGTTTGCTTTCCGATTGTCAACACCGCCACTGCTACTACAACTGGAAGACGAGGAGATTCTGTATAACACGAAGTCTGCACTTGGACTTATAGTGGTACTCAGCACTATAGATTTCAATATTATGAGGTCGTCTGAGAAAAATGGAAAAAGTCGGAAGCCTGCTTTTGTA
CAGAATTCAATGCAAAATGTTCCTCAAGAGGGGCTGAACTGGGTTGTTTTATTGGGTGGGGCTATTGTGAGCGCCTTGTCAGTTACACTTGGGCGTAAGTTGAAGCAGGCCCTTGAGATTAACCGCGAAAGAGATACGAAAGCACTAAATGAGCCAGAAGGAAGCTCTGCTACAAACCGAATTTCAGGGGTTCATCCCTT
GCGCTCAAATCTGGATTACTGCAGGCAGGGTGGAGTAGTTTGCATTCATTGTTTTCCTGGTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACATACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATTTATTCTGAAAGTACAGCAAATAGCC
CTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAATAGCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAGGGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCAAGTTCAGATTACTGATCAGCTGCAA
ATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAACAGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATGCAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATTATACAATGGTAGATCCTTCGATGAG
TAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGGGAGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGGTATGAAATGAAAACTCCAGATGTAAAGGTGTGGAATCTATTAGAGGACCTACCCTGCATTTCGTTGAACAGAAATGGAGAAATGACTAAACATGAAGATA
CCCTTGAAAGCGTGAAAGACATGGAGAGAGAATTAGTTGAACTCAAGCGGTTAGTTAGTGGAAAAAATTATCTTCTAGAGGAATATGAGAATCAACGGGTGGAACTATCCACTCAGCTGAAGGAGCTTCAGCTTAAATTGGGTACTCAGGTGGCAAATGTACTATAGTTTTTGCGGAATATCTAGGAGAGGCTTTTATTT
TCAATTTTGGTGCCTCTCCATACACATATTGTTCTGTGTGTTTATATCCCTATTCTGGAAATTGCATTTTTATAACAGTTCACTGACGTGGTTTCAGTATGAGTGCCAATTTTCTGTTGGACAAAATCTTCACTGGGTATAGGCAGGAGCTATGCCTCAAACTTTCCACAAGCAGCAAAATGTTCAAATATCATTGATGA
TTTCATTTTGTTCACTCTAAAATTTTACGTCTAAAAC
>TRINITY_DN110161_c0_g1_i2 from sample A2 / Example unspliced isoform:TAGCCCCAACTACCCACTCCATTCACTAAAAATTAAGAAATATTTATTATTCATGACAAACTCCATGGTCCGCATTGGCGAGGGAAAAACGAACAGCGTGTTTGAATCGGTTGAACCAGAGAGTCTAGTTATCGTGATTGCCGCACAAATTTCACGATGTTTTCATGGTTTTCCGGCGATGTGGACCGGTGATTGCCCGT
GCTATTTACCGGTCACGTGAGGCTTTCTAGGGTTTGCTTTCCGATTGTCAACACCGCCACTGCTACTACAACTGGAAGACGAGGAGATTCTGTATAACACGAAGTCTGCACTTGGACTTATAGTGGTACTCAGCACTATAGATTTCAATATTATGAGGTCGTCTGAGAAAAATGGAAAAAGTCGGAAGCCTGCTTTTGTA
CAGAATTCAATGCAAAATGTTCCTCAAGAGGGGCTGAACTGGGTTGTTTTATTGGGTGGGGCTATTGTGAGCGCCTTGTCAGTTACACTTGGGCGTAAGTTGAAGCAGGCCCTTGAGATTAACCGCGAAAGAGATACGAAAGCACTAAATGAGCCAGgtatatgctgtccttaacactttaattaccaactaaggttgta
gctgtttgaaccactattggacattataactatgcatgcagAAGGAAGCTCTGCTACAAACCGAATTTCAGGGGTTCATCCCTTGCGCTCAAATCTGGATTACTGCAGGCAGGGTGGAGTAGTTTGCATTCATTGTTTTCCTGGTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAAT
TTGACAATGACAGACATACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATTTATTCTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAATAGCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGAT
TTCATACACAGATTGAGGGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCAAGTTCAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAACAGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGA
TCACTGTGCAGGTCATGCAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATTATACAATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGGGAGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGGTATGAAATGAAAACTC
CAGATGTAAAGGTGTGGAATCTATTAGAGGACCTACCCTGCATTTCGTTGAACAGAAATGGAGAAATGACTAAACATGAAGATACCCTTGAAAGCGTGAAAGACATGGAGAGAGAATTAGTTGAACTCAAGCGGTTAGTTAGTGGAAAAAATTATCTTCTAGAGGAATATGAGAATCAACGGGTGGAACTATCCACTCAG
CTGAAGGAGCTTCAGCTTAAATTGGGTACTCAGGTGGCAAATGTACTATAGTTTTTGCGGAATATCTAGGAGAGGCTTTTATTTTCAATTTTGGTGCCTCTCCATACACATATTGTTCTGTGTGTTTATATCCCTATTCTGGAAATTGCATTTTTATAACAGTTCACTGACGTGGTTTCAGTATGAGTGCCAATTTTCTG
TTGGACAAAATCTTCACTGGGTATAGGCAGGAGCTATGCCTCAAACTTTCCACAAGCAGCAAAATGTTCAAATATCATTGATGATTTCATTTTGTTCACTCTAAAATTTTACGTCTAAAAC
Intron 5 GTTCTTCTGA ... AGGAACAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.46 | 15 | 29 | 15 |
| A2 | 47.54 | 16 | 18 | 11 |
| A3 | 76.19 | 5 | 11 | 21 |
| A4 | 62.79 | 8 | 18 | 9 |
| A5 | 60 | 5 | 13 | 2 |
| A6 | 53.95 | 35 | 37 | 45 |
| A7 | 54.68 | 46 | 52 | 59 |
| A8 | 55.13 | 59 | 59 | 86 |
| A9 | 53.14 | 56 | 55 | 72 |
| A10 | 53.85 | 33 | 35 | 42 |
>TRINITY_DN40440_c0_g2_i2 from sample A9 / Example spliced isoformAAAAAATCACACCTAGCCCCAACTACCCACTCCATTCACTAAAAATTAAGAAATATTTATTATTCATGACAAACTCCATGGTCCGCATTGGCGAGGGAAAAACGAACAGCGTGTTTGAATCGGTTGAACCAGAGAGTCTAGTTATCGTGATTGCCGCACAAATTTCACGATGTTTTCATGGTTTTCCGGCGATGTGGACC
GGTGATTGCCCGTGCTATTTACCGGTCACGTGAGGCTTTCTAGGGTTTGCTTTCCGATTGTCAACACCGCCACTGCTACTACAACTGGAAGACGAGGAGATTCTGTATAACACGAAGATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGATTAGTTGAAAGTTTCCGAAGATGAAATAAAAGCATTGGTTCAAGAA
GAGAAGCCTAAACTAAAGGTTTAGCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGCACAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGAAGAGCAAGGATGACAAGGATCAAGGCTGTAATGCTATTTTAGAGATTATAT
TAGAGTTGAGGCCACTTGACACATGATTATAATTTAAGATATGCTCCTAATTAGATTATCAGTTGGCCAAGCAGTCTTAATATTTTAGATAAATTTTGATTGGAAGAATTATCTATTTTGCACAGGATTTTGTGGAGGAAAAGTAG
>TRINITY_DN40440_c0_g2_i1 from sample A9 / Example unspliced isoform:AAAAAATCACACCTAGCCCCAACTACCCACTCCATTCACTAAAAATTAAGAAATATTTATTATTCATGACAAACTCCATGGTCCGCATTGGCGAGGGAAAAACGAACAGCGTGTTTGAATCGGTTGAACCAGAGAGTCTAGTTATCGTGATTGCCGCACAAATTTCACGATGTTTTCATGGTTTTCCGGCGATGTGGACC
GGTGATTGCCCGTGCTATTTACCGGTCACGTGAGGCTTTCTAGGGTTTGCTTTCCGATTGTCAACACCGCCACTGCTACTACAACTGGAAGACGAGGAGATTCTGTATAACACGAAGgttcttctgatggagcagtcgagatgaagttaggacctcaggatgctaacttccaatttgacaatgacagacatacaatatcc
ccaaagcagtgcaaactgtcagaaattcaaatttattctgaaagtacagcaaatagccctttatgggtatctccagagcaacttgatctggccaatgtgcatttacagcagtccaatagctcagaatcagtatgtacatcagatacaggctctgatctgtttagcaagcgtgatttcatacacagattgagggaacagct
gaaaagaagagatgaaatgataatggagatgcaagttcagattactgatcagctgcaaatcataaataatcaaatttcacacatgacaaatttacagtcacagcttgatgcagcaaacagggagtcatttggaacagaaagggaaattcagcgattgcgcaaagcaattgcagatcactgtgcaggtcatgcagtggata
tgtcttgttcatctgggacaatgattactaattatacaatggtagatccttcgatgagtagatcaattgcagacttacagggttccacaattggaagtgctgaactatgcaacgggggagctcaaagatttcatgaacagaagctgcaggaacagagATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGATTAGTT
GAAAGTTTCCGAAGATGAAATAAAAGCATTGGTTCAAGAAGAGAAGCCTAAACTAAAGGTTTAGCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGCACAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGAAGAGCAAGGAT
GACAAGGTTGTACAAGGCTGCGGTGTACTTCTTTTGTTTCTTGTAAATATTCTACGATGTTCCTGCTTGGGTTGTATATCTATAAAGAGATCATGATTCTTCTATGGTTTGAGGTATCTGTGGTTTTCAAATTTGGAATTTGTGCTTGCATGTGAATCACTAATCCTGTGAGATTTTTGTGATGCATCTTCCTTACAATA
TTCTATTCCTCTCTATTTGACAATTCTTTCCCTCTGGCATTTTTTTTGCAGGATCAAGGCTGTAATGCTATTTTAGAGATTATATTAGAGTTGAGGCCACTTGACACATGATTATAATTTAAGATATGCTCCTAATTAGATTATCAGTTGGCCAAGCAGTCTTAATATTTTAGATAAATTTTGATTGGAAGAATTATCTA
TTTTGCACAGGATTTTGTGGAGGAAAAGTAG
Intron 6 GTATAATTAT ... AAACTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.5 | 14 | 3 | 2 |
| A2 | 22.01 | 17.8 | 0 | 5 |
| A3 | 28.84 | 15 | 2 | 6 |
| A4 | 15.79 | 16 | 0 | 3 |
| A5 | 16.67 | 5 | 0 | 1 |
| A6 | 23.28 | 85.8 | 8 | 26 |
| A7 | 11.93 | 110.8 | 4.8 | 15 |
| A8 | 16.6 | 160.8 | 6 | 32 |
| A9 | 19.16 | 105.5 | 4.8 | 25 |
| A10 | 12.87 | 67.8 | 0.3 | 10 |
>TRINITY_DN41048_c0_g1_i5 from sample A6 / Example spliced isoformTATGGCCTTTCATTGAAGTACAGCAACAAAATCACAATCACAATAAAAAAAAATCACACCTAGCCCCAACTACCCACTCCATTCACTAAAAATTAAGAAATATTTATTATTCATGACAAACTCCATGGTCCGCATTGGCGAGGGAAAAACGAACAGCGTGTTTGAATCGGTTGAACCAGAGAGTCTAGTTATCGTGATTG
CCGCACAAATTTCACGATGTTTTCATGGTTTTCCGGCGATGTGGACCGGTGATTGCCCGTGCTATTTACCGGTCACGTGAGGCTTTCTAGGGTTTGCTTTCCGATTGTCAACACCGCCACTGCTACTACAACTGGAAGACGAGGAGATTCTGTATAACACGAAGTTTGCACTTGGACTTATAGTGGTACTCAGCACTATA
GATTTCAATATTATGAGGTCGTCTGAGAAAAATGGAAAAAGTCGGAAGCCTGCTTTTGTACAGAATTCAATGCAAAATGTTCCTCAAGAGGGGCTGAACTGGGTTGTTTTATTGGGTGGGGCTATTGTGAGCGCCTTGTCAGTTACACTTGGGCGTAAGTTGAAGCAGGCCCTTGAGATTAACCGCGAAAGAGATACGAA
AGCACTAAATGAGCCAGAAGGAAGCTCTGCTACAAACCGAACTTCAGGGGTTCATCCCTTGCGCTCAAATCTGGATTACTGCAGGCAGGGTGGAGTAGTTTGCATTCATTGTTTTCCTGGTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACATACAATAT
CCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATTTATTCTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAATAGCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAGGGAACAG
CTGAAAAGAAGAGATGAAATGATAATGGAGATGCAAGTTCAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAACAGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATGCAGTGGA
TATGTCTTGTTCATCTGGGACAATGATTACTAATTATACAATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGGGAGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGATTAG
TTGAAAGTTTCCGAAGATGAAATAAAAGCATTGGTTCAAGAAGAGAAGCCTAAACTAAAGGTTTAGCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGCACAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGAAGAGCAAGG
ATGACAAGGTTGTACAAGGCTGCGGTGTACTTCTTTTGTTTCTTGTAAATATTCTACGATGTTCCTGCTTGGGTTGTATATCTATAAAGAGATCATGATTCTTCTATGGTTTGAGGTATCTGTGGTTTTCAAATTTGGAATTTGTGCTTGCATGTGAATCACTAATCCTGTGAGATTTTTGTGATGCATCTTCCTTACAA
TATTCTATTCCTCTCTATTTGACAATTCTTTCCCTCTGGCATTTTTTTTGCAGGATCAAGGCTGTAATGCTATTTTAGAGATTATATTAGAGTTGAGGCCACTTGACACAGGATGATAGTTTAAGATAAGCTCCTAATCAG
>TRINITY_DN41048_c0_g1_i6 from sample A6 / Example unspliced isoform:GTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACATACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATTTATTCTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAAT
AGCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAGGGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCAAGTTCAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAA
CAGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATGCAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATTATACAATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGG
GAGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGATTAGTTGAAAGTTTCCGAAGATGAAATAAAAGCATTGGTTCAAGAAGAGAAGCCTAAACTAAAGGTTTAGgtataattatcctggcagtgctgcactttttaaagcttgatagccttgtaaca
tcattatgctttctactgtttctgaacaagtatttgcacttttcatctggtgttttacctgtcgaaaacttgtagCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGCACAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGA
AGAGCAAGGATGACAAGGTTGTACAAGGCTGCGGTGTACTTCTTTTGTTTCTTGTAAATATTCTACGATGTTCCTGCTTGGGTTGTATATCTATAAAGAGATCATGATTCTTCTATGGTTTGAGGTATCTGTGGTTTTCAAATTTGGAATTTGTGCTTGCATGTGAATCACTAATCCTGTGAGATTTTTGTGATGCATCT
TCCTTACAATATTCTATTCCTCTCTATTTGACAATTCTTTCCCTCTGGCATTTTTTTTGCAGGATCAAGGCTGTAATGCTATTTTAGAGATTATATTAGAGTTGAGGCCACTTGACACAGGATGATAGTTTAAGATAAGCTCCTAATCAG
Intron 7 GTTGTACAAG ... ATGGTTTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 91.89 | 3 | 34 | 0 |
| A2 | 95.65 | 1 | 22 | 2 |
| A3 | 88.89 | 2 | 16 | 0 |
| A4 | 90.91 | 2 | 20 | 0 |
| A5 | 75 | 1 | 3 | 1 |
| A6 | 84.91 | 16 | 90 | 3 |
| A7 | 93.94 | 8 | 124 | 9 |
| A8 | 85.59 | 33 | 196 | 19 |
| A9 | 85.47 | 17 | 100 | 8 |
| A10 | 89.66 | 6 | 52 | 3 |
>TRINITY_DN42011_c1_g1_i4 from sample A8 / Example spliced isoformGAAAGTGAAGCTCAACAATGTTTCAGACTCAACGATATACTCAATAAAGAATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGATTAGTTGAAAGTTTCCGAAGATGAAATAAAAGCATTGGTTCAAGAAGAGAAGCCTAAACTAAAGGTTTAGCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGCA
CAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGAAGAGCAAGGATGACAAGGATCAAGGCTGTAATGCTATTTTAGAGATTATATTAGAGTTGAGGCCACTTGACACATGATTATAATTTAAGATATGCTCCTAATTAGATTATCAGTTGGC
CAAGCAGTCTTAATATTTTAGATAAATTTTGATTGGAAGAATTATCTATTTTGCACAGGATTTTGTGGAGGAAAAGTAGAAACAAAAATGACTAAAGCATGTGATACAGATTTGTGAGTACTCTAATTAATACCTGATGATGTACTTTCAGAAATTTATTTCCACCCACTACATTTGTGTTTCCCCAGATATTTTAATTT
TAATTGAACATGAAACACCAGCAAATATCAAATATCAAGAATATATAATTGATGTAAAGTTTCATTGCAACTTTGTTCAATGGCAAGTTCGACCGACGGCTTTCATACCCATTGTGGTCTGTGTTATCTGCATGACATTATTTTCAAAGGGATTAGGCTAATTGCATGTCCATGCGATTTTGGCAGAATAAACCCCATCA
GACCACTGACTTAAAACAAAGTTGAAGGTCCAATCTTTGTGGTGCAGC
>TRINITY_DN42011_c1_g1_i3 from sample A8 / Example unspliced isoform:AATCACAATAAAAAAAAATCACACCTAGCCCCAACTACCCACTCCATTCACTAAAAATTAAGAAATATTTATTATTCATGACAAACTCCATGGTCCGCATTGGCGAGGGAAAAACGAACAGCGTGTTTGAATCAGTTGAACCAGAGAGTCTAGTTATCGTGATTGCCGCACAAATTTCACGATGTTTTCATGGTTTTCCG
GCGATGTGGACCGGTGATTGCCCGTGCTATTTACCGGTCACGTGAGGCTTTCTAGGGTTTGCTTTCCGATTGTCAACACCGCCACTGCTACTACAACTGGAAGACGAGGAGATTCTGTATAACACGAAGTTTGCACTTGGACTTATAGTGGTACTCAGCACTATAGATTTCAATATTATGAGGTCGTCTGAGAAAAATGG
AAAAAGTCGGAAGCCTGCTTTTGTACAGAATTCAATGCAAAATGTTCCTCAAGAGGGGCTGAACTGGGTTGTTTTATTGGGTGGGGCTATTGTGAGCGCCTTGTCAGTTACACTTGGGCGTAAGTTGAAGCAGGCCCTTGAGATTAACCGTGAAAGAGATACGAAAGCACTAAATGAGCCAGAAGGAAGCTCTGCTACAA
ACCGAATTTCAGGGGTTCATCCCTTGCGCTCAAATCTGGATTACTGCAGGCAGGGTGGAGTAGTTTGCATTCATTGTTTTCCTGGTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACATACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATT
TATTCTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAATAGCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAGGGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCA
AGTTCAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAACAGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATGCAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATT
ATACAATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGGGAGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGATTAGTTGAAAGTTTCCGAAGATGAAATAAAAGCATTGGT
TCAAGAAGAGAAGCCTAAACTAAAGGTTTAGCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGCACAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGAAGAGCAAGGATGACAAGgttgtacaaggctgcggtgtacttctt
ttgtttcttgtaaatattctacgatgttcctgcttgggttgtatatctataaagagatcatgattcttctatggtttgagGATCAAGGCTGTAATGCTATTTTAGAGATTATATTAGAGTTGAGGCCACTTGACACATGATTATAATTTAAGATATGCTCCTAATTAGATTATCAGTTGGCCAAGCAGTCTTAATATTTT
AGATAAATTTTGATTGGAAGAATTATCTATTTTGCACAGGATTTTGTGGAGGAAAAGTAGAAACAAAAATGACTAAAGCATGTGATACAGATTTGTGAGTACTCTAATTAATACCTGATGATGTACTTTCAGAAATTTATTTCCACCCACTACATTTGTGTTTCCCCAGATATTTTAATTTTAATTGAACATGAAACACC
AGCAAATATCAAATATCAAGAATATATAATTGATGTAAAGTTTCATTGCAACTTTGTTCAATGGCAAGTTCGACCGACGGCTTTCATACCCATTGTGGTCTGTGTTATCTGCATGACATTATTTTCAAAGGGATTAGGCTAATTGCATGTCCATGCGATTTTGGCAGAATAAACCCCATCAGACCACTGACTTAAAACAA
AGTTGAAGGTCCAATCTTTGTGGTGCAGC
Intron 8 GTATCTGTGG ... TTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 3 |
| A2 | 77.78 | 2 | 2 | 7 |
| A3 | 100 | 0 | 0 | 1 |
| A4 | 100 | 0 | 0 | 3 |
| A5 | 75 | 1 | 0 | 3 |
| A6 | 96.2 | 3 | 4 | 76 |
| A7 | 91.67 | 9 | 7 | 99 |
| A8 | 92.43 | 19 | 8 | 232 |
| A9 | 93.89 | 8 | 5 | 123 |
| A10 | 93.33 | 3 | 2 | 42 |
>TRINITY_DN44500_c0_g3_i9 from sample A7 / Example spliced isoformTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACATACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATTTATTCTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAATA
GCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAGGGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCAAGTTCAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAAC
AGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATGCAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATTATACAATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGGG
AGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGGTAGTGTTGAAGCCATGCAAAGCCATTGCGGATATGAAGGTTGCTCGCAGTGGAAGCCAATGATCTATAGGAAGAAAGTGAAGCTCAACAATGTTTCAGACTCAGCGATATACTCAATAAAGAATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGAT
TAGTTGAAAGTTTCCGAAGATGAAATAAAAGCATTGGTTCAAGAAGAGAAGCCTAAACTAAAGGTTTAGCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGCACAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGAAGAGCA
AGGATGACAAGGTTGTACAAGGCTGCGGTGTACTTCTTTTGTTTCTTGTAAATATTCTACGATGTTCCTGCTTGGGTTGTATATCTATAAAGAGATCATGATTCTTCTATGGTTTGAGGATCAAGGCTGTAATGCTATTTTAGAGATTATATTAGAGTTGAGGCCACTTGACACATGATTATAATTTAAGATATGCTCCT
AATTAGATTATCAGTTGGCCAAGCAGTCTTAATATTTTAGATAAATTTTGATTGGAAGAATTATCTATTTTGCACAGGATATTGTGAAGGAAAAGTAGGATAAAAAAATGACTAAAGCATGTGCTATATTTATTAAGGCACACACTTTATTGATATGTTTGCTTTAACATGCATCTAATTGTGCATGTGGCTATTCTGTT
TTAA
>TRINITY_DN44500_c0_g3_i3 from sample A7 / Example unspliced isoform:ATCACAATAAAAAAAAATCACACCTAGCCCCAACTACCCACTCCATTCACTAAAAATTAAGAAATATTTATTATTCATGACAAACTCCATGGTCCGCATTGGCGAGGGAAAAACGAACAGCGTGTTTGAATCGGTTGAACCAGAGAGTCTAGTTATCGTGATTGCCGCACAAATTTCACGATGTTTTCATGGTTTTCCGG
CGATGTGGACCGGTGATTGCCCGTGCTATTTACCGGTCACGTGAGGCTTTCTAGGGTTTGCTTTCCGATTGTCAACACCGCCACTGCTACTACAACTGGAAGACGAGGAGATTCTGTATAACACGAAGTCTGCACTTGGACTTATAGTGGTACTCAGCACTATAGATTTCAATATTATGAGGTCGTCTGAGAAAAATGGA
AAAAGTCGGAAGCCTGCTTTTGTACAGAATTCAATGCAAAATGTTCCTCAAGAGGGGCTGAACTGGGTTGTTTTATTGGGTGGGGCTATTGTGAGCGCCTTGTCAGTTACACTTGGGCGTAAGTTGAAGCAGGCCCTTGAGATTAACCGCGAAAGAGATACGAAAGCACTAAATGAGCCAGAAGGAAGCTCTGCTACAAA
CCGAATTTCAGGGGTTCATCCCTTGCGCTCAAATCTGGATTACTGCAGGCAGGGTGGAGTAGTTTGCATTCATTGTTTTCCTGGTTCTTCTGATGGAGCAGTCGAGATGAAGTTAGGACCTCAGGATGCTAACTTCCAATTTGACAATGACAGACATACAATATCCCCAAAGCAGTGCAAACTGTCAGAAATTCAAATTT
ATTCTGAAAGTACAGCAAATAGCCCTTTATGGGTATCTCCAGAGCAACTTGATCTGGCCAATGTGCATTTACAGCAGTCCAATAGCTCAGAATCAGTATGTACATCAGATACAGGCTCTGATCTGTTTAGCAAGCGTGATTTCATACACAGATTGAGGGAACAGCTGAAAAGAAGAGATGAAATGATAATGGAGATGCAA
GTTCAGATTACTGATCAGCTGCAAATCATAAATAATCAAATTTCACACATGACAAATTTACAGTCACAGCTTGATGCAGCAAACAGGGAGTCATTTGGAACAGAAAGGGAAATTCAGCGATTGCGCAAAGCAATTGCAGATCACTGTGCAGGTCATGCAGTGGATATGTCTTGTTCATCTGGGACAATGATTACTAATTA
TACAATGGTAGATCCTTCGATGAGTAGATCAATTGCAGACTTACAGGGTTCCACAATTGGAAGTGCTGAACTATGCAACGGGGGAGCTCAAAGATTTCATGAACAGAAGCTGCAGGAACAGAGATGGGCCTCTTGGCAGAAAATCAGACTCTACTGAAGATTAGTTGAAAGTTTCCGAAGATGAAATAAAAGCATTGGTT
CAAGAAGAGAAGCCTAAACTAAAGGTTTAGGTATAATTATCCTGGCAGTGCTGCACTTTTTAAAGCTTGATAGCCTTGTAACATCATTATGCTTTCTACTGTTTCTGAACAAGTATTTGCACTTTTCATCTGGTGTTTTACCTGTCGAAAACTTGTAGCTGCAGAACCTGCACAGTTGGACAATAACCCTCCTCGTTTGC
ACAAACAAGTTCTGAAGTTACTAAGCAATCAAATTCCCAAGTTACAGAGGTTTCTCCAAATCAAAGTAGGATTGAGAATGTGAAGAGCAAGGATGACAAGGTTGTACAAGGCTGCGGTGTACTTCTTTTGTTTCTTGTAAATATTCTACGATGTTCCTGCTTGGGTTGTATATCTATAAAGAGATCATGATTCTTCTATG
GTTTGAGgtatctgtggttttcaaatttggaatttgtgcttgcatgtgaatcactaatcctgtgagatttttgtgatgcatcttccttacaatattctattcctctctatttgacaattctttccctctggcattttttttgcagGATCAAGGCTGTAATGCTATTTTAGAGATTATATTAGAGTTGAGGCCACTTGACA
CATGATTATAATTTAAGATATGCTCCTAATTAGATTATCAGTTGGCCAAGCAGTCTTAATATTTTAGATAAATTTTGATTGGAAGAATTATCTATTTTGCACAGGATATTGTGAAGGAAAAGTAGGATAAAAAAATGACTAAAGCATGTGCTATATTTATTAAGGCACACACTTTATTGATATGTTTGCTTTAACATGCA
TCTAATTGTGCATGTGGCTATTCTGTTTTAA