sp|Q43157|RPE_SPIOL ----> Ribulose-phosphate 3-epimerase, chloroplastic

Intron 1 GTAAGGAACT ... CGGTTGTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	11.69	59.4	8.9	11.6
A2	13.18	45	7.8	7.7
A3	11.88	38	5.3	11.6
A4	6.17	39.7	2.8	7.1
A5	13.89	20.8	3.9	1.8
A6	7.99	190.2	17.7	32.4
A7	8.35	147.6	14.2	22
A8	7.14	176.3	14.2	35.1
A9	8.93	125.4	13.2	26.7
A10	11.19	106.2	15	16.4

>TRINITY_DN107002_c0_g1_i3 from sample A2 / Example spliced isoform

TTGGCTTATATTTAGTTGTTTGTCGAATTATAATGGTTGTCTTTTATCTTTCTTTCTCTTTGAACTTCAGATCAAGAGTCTTGGAGCGAAAGCTGGAGTAGTTTTGAACCCGGCAACCCCATTAAGTTGTATAGAATATGTGCTTGATGTGGTAGACTTGGTCTTAATTATGTCAGTCAATCCCGGATTTGGTGGGCAGA
GCTTTATAGAAAGTCAAGTGAAGAAAATCTCAGAGCTAAGGAGAATGTGTGCAGAGAGGGGCGTGAACCCATGGATTGAGGTGGATGGTGGTGTTACTCCTTCAAATGCCTACAAGGTTATTGAAGCTGGAGCCAATGCGCTGGTGGCAGGATCTGCAGTATTTGGAGCAAAGGATTATGCTGAAGCTATTAAGGGCATC
AAGACCAGTAAGAGGCCAACCCCAGTTGCAGCATGAGGCCAGTTTTAATGAGTATACTTTTCTATACAGTATATGGTTCTGATTCTATTGCCAGATTAGCAGATTGATCTCTTGTTTCTGCTCAGAAGCAAGCCAGAACTGATGAGGGATCATTTGCCATTCTGTGGCAAGTGTAGTATTATTTATTATTTTATTCTCCA
TGTAACTTGCAAAATCATGCAAATAAGAATGGCTGTCAGCTTTACCAAAGTCGGCAAATTCTAGGAAAATCTTGAATGGAAATCTATTCCTTAAAAGCCATGAAATTAAGTAACTTCATATATAATCAGCTTCAATGTCGGCCTATGTCCAGATGCAGTATAAATGCAC

>TRINITY_DN107002_c0_g1_i4 from sample A2 / Example unspliced isoform:

TTGGCTTATATTTAGTTGTTTGTCGAATTATAATGGTTGTCTTTTATCTTTCTTTCTCTTTGAACTTCAGATCAAGAGTCTTGGAGCGAAAGCTGGAGTAGTTTTGAACCCGGCAACCCCATTAAGTTGTATAGAATATGTGCTTGATGTGGTAGACTTGGTCTTAATTATGTCAGTCAATCCCGGATTTGGTGGGCAGA
GCTTTATAGAAAGTCAAGTGAAGAAAATCTCAGAGCTAAGGAGAATGTGTGCAGAGAGGgtaaggaactggacagactttctcaagtgcactatagtaattttgcctctattgtgccaatttgcatggcattataggccactaaagatccttcaacttgagaatcttaaactaacccgtcggttgtcagGGCGTGAACCC
ATGGATTGAGGCGGAT

Intron 2 GTATAATTGA ... TTCAATATAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	39.87	39	29	22.9
A2	24.83	41	21	6.1
A3	22.43	34	15	4.7
A4	29.72	41	19	15.7
A5	25.32	29	10	9.7
A6	19.76	102	35	15.3
A7	12.5	105	20	10.1
A8	15.08	61	15	7
A9	17.59	96	31	10.1
A10	21.73	103	36	21.3

>TRINITY_DN116077_c8_g1_i7 from sample A1 / Example spliced isoform

TCCACCCACCCTCTTCTCGATTTCGAATTTACCAAGACATCCAGTCACATTTTTTTATTTTCATTTTGTTGCATCGAGGTCCAGAGATCGATTCTTAGGCATGTCAACAGCAGCAACATCAATATGCGCCACAGCCGCCATGTTGGGTTCGCAGAGCACCCATTCTGTGGGTGTCTGCCGGAGTCCGTTCTGGGGAAAGA
AGCATAACATGGCCTTTGTATCTCCTCAATGGGCGACCTCTTCAAGGAATGTTCTTTCTACAGTGAAGGCATCTGCCCGAGTTGACAAGTTCTCCAAAACTGACATCATTGTCTCTCCTTCTATTCTTTCTGCAAATTTTGCAACATTGGGTGAGCAGGTCAAAGCTGTGGAGAAGGCAGGTTGTGATTGGGTTCATGTT
GATGTTATGGATGGGCGTTTTGTGCCAAATATTACCATTGGACCTCTGGTGGTTGCTGCATTACGACCGGTGACAGATTTGCCATTGGATGTACATTTGATGATTGTTGAACCGGAACAACGTGTACCAGATTTTATCAAGGCTGGTGCAGACATCGTTAGTGTCCACTGTGAGCAATCTTCCACTATCCATTTGCACCG
AACAGTAAATCAGATCAAGAGTCTTGGAGCGAAAGCTGGAGTAGTTTTGAACCCGGCAACCCCATTAAGTTGTATAGAATATGTGCTTGATGTGGTAGACTTGGTCTTAATTATGTCAGTCAATCCCGGATTTGGTGGGCAGAGCTTTATAGAAAGTCAAGTGAAGAAAATCTCAGAGCTAAGGAGAATGTGTGCAGAGA
GGGGCGTGAACCCATGGATTGAGGTGGATGGTGGTGTTACTCCTTCAAATGCCTACAAGGTTATTGAAGCTGGAGCCAATGCGCTGGTGGCAGGATCTGCAGTATTTGGAGCAAAGGATTATGCTGAAGCTATTAAGGGCATCAAGACCAGTAAGAGGCCAACCCCAGTTGCAGCATGAGGCCAGTTTTAATGAGTATAC
TTTTCTATACAGTATATGGTTCTGATTCTATTGCCAGATTAGCAGATTGATCTCTTGTTTCTGCTCAGAAGCAAGCCAGAACTGATGAGGGATCATTTGCCATTCTGTGGCAAGTGTAGTATTATTTATTATTTTATTCTCCATGTAACTTGCAAAATCATGCAAATAAGAATGGCTGTCAGCTTTACCAAAGTCGGCAA
ATTCTAGGAAAATCTTGAATGGAAATCTATTCCTTAAAAGCCATGAAATTAAGTAACTTCATATATAATCAGCTTCAATGTCGGCCTATGTCCAGATGCAGTATAAATGCACATGAATTTACAGTGTACTCATGACATGTAGAAAGGGAAACTCTTATTATGCTACTGTTTCTTTAGAGGATTCCAAACAC

>TRINITY_DN116077_c8_g1_i4 from sample A1 / Example unspliced isoform:

CCAAAGCTGCCATTCCTCGAGATTTTTTTTAAATGTGTTAAAGTTAGATGCTGCTTTGTACATCTGTCATGCTGTGGTCTGGTGGTATATTAGAGCACTTCCCATGAGGATCGCCCAGGTTCAAAACCTGGTGGGCATGTTCACCATGGTAATGCAGTTGACCAAGTCTCCATGAGTTGTGATGTCGTGTTAATTTGACC
GAATTGATACCCACTTTGTCATGGTATCTATAAGATGAAGCCAAGCTCACTTTGTTGACAAAGGGTGATTTACCAAACAAAAAAGAAAAAAAGAGGCTGCTTTGCATGATTTTTCCAAAAAAATTTAGTTCCAAACCTTTGATGCTTTGTCAAAACTGGTCTGGCTGTTGATTTCAGAGTAACTTATGTTTCTATGATTC
ATAGGTCAAAGCTGTGGAGAAGGCAGGTTGTGATTGGGTTCATGTTGATGTTATGGATGGGCGTTTTGTGCCAAATATTACCATTGGACCTCTGGTGGTTGCTGCATTACGACCGGTGACAGATTTGCCATTGGATGTACATTTGgtataattgacattctttcttatatgactctttctgtgtgactgtctattgctaa
gagtaagcatttagatgcggtctttaaatattttagttttcatgtattacttgcgagataaaagatgagttgatttgatggccaactgcaattattgttttctatgtctatgaattatgagtttatggccttgcattgaaatgtgttaattgatttactaacttttgaagttttcaactcattcaatatagATGATTGTT
GAACCGGAACAACGTGTACCAGATTTTATCAAGGCTGGTGCAGACATCGTTAGTGTCCACTGTGAGCAATCTTCCACTATCCATTTGCACCGAACAGTAAATCAGGTGGGATTATTCTCTAATATCTTTATTTGAGAGACAGTTCGGTGGAAGTTAATAGCTCAAGATTTATGATGAAGTACATACTCAATAAATTATTA
GATAGTACAGCTATGGTACA

Intron 3 GTGGGTGCAT ... TCTATTTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20	60	0	15
A2	9.52	57	2	6
A3	13.56	51	2	8
A4	16.18	57	0	11
A5	21.43	22	0	6
A6	15.81	229	0	43
A7	15.12	174	0	31
A8	15.08	214	0	38
A9	21.18	201	0	54
A10	15.88	143	0	27

>TRINITY_DN116077_c8_g1_i7 from sample A1 / Example spliced isoform

TCCACCCACCCTCTTCTCGATTTCGAATTTACCAAGACATCCAGTCACATTTTTTTATTTTCATTTTGTTGCATCGAGGTCCAGAGATCGATTCTTAGGCATGTCAACAGCAGCAACATCAATATGCGCCACAGCCGCCATGTTGGGTTCGCAGAGCACCCATTCTGTGGGTGTCTGCCGGAGTCCGTTCTGGGGAAAGA
AGCATAACATGGCCTTTGTATCTCCTCAATGGGCGACCTCTTCAAGGAATGTTCTTTCTACAGTGAAGGCATCTGCCCGAGTTGACAAGTTCTCCAAAACTGACATCATTGTCTCTCCTTCTATTCTTTCTGCAAATTTTGCAACATTGGGTGAGCAGGTCAAAGCTGTGGAGAAGGCAGGTTGTGATTGGGTTCATGTT
GATGTTATGGATGGGCGTTTTGTGCCAAATATTACCATTGGACCTCTGGTGGTTGCTGCATTACGACCGGTGACAGATTTGCCATTGGATGTACATTTGATGATTGTTGAACCGGAACAACGTGTACCAGATTTTATCAAGGCTGGTGCAGACATCGTTAGTGTCCACTGTGAGCAATCTTCCACTATCCATTTGCACCG
AACAGTAAATCAGATCAAGAGTCTTGGAGCGAAAGCTGGAGTAGTTTTGAACCCGGCAACCCCATTAAGTTGTATAGAATATGTGCTTGATGTGGTAGACTTGGTCTTAATTATGTCAGTCAATCCCGGATTTGGTGGGCAGAGCTTTATAGAAAGTCAAGTGAAGAAAATCTCAGAGCTAAGGAGAATGTGTGCAGAGA
GGGGCGTGAACCCATGGATTGAGGTGGATGGTGGTGTTACTCCTTCAAATGCCTACAAGGTTATTGAAGCTGGAGCCAATGCGCTGGTGGCAGGATCTGCAGTATTTGGAGCAAAGGATTATGCTGAAGCTATTAAGGGCATCAAGACCAGTAAGAGGCCAACCCCAGTTGCAGCATGAGGCCAGTTTTAATGAGTATAC
TTTTCTATACAGTATATGGTTCTGATTCTATTGCCAGATTAGCAGATTGATCTCTTGTTTCTGCTCAGAAGCAAGCCAGAACTGATGAGGGATCATTTGCCATTCTGTGGCAAGTGTAGTATTATTTATTATTTTATTCTCCATGTAACTTGCAAAATCATGCAAATAAGAATGGCTGTCAGCTTTACCAAAGTCGGCAA
ATTCTAGGAAAATCTTGAATGGAAATCTATTCCTTAAAAGCCATGAAATTAAGTAACTTCATATATAATCAGCTTCAATGTCGGCCTATGTCCAGATGCAGTATAAATGCACATGAATTTACAGTGTACTCATGACATGTAGAAAGGGAAACTCTTATTATGCTACTGTTTCTTTAGAGGATTCCAAACAC

>TRINITY_DN116077_c8_g1_i6 from sample A1 / Example unspliced isoform:

ACTCCTTCAAATGCCTACAAGgtgggtgcattaaagtttttatattgtttctgattagggatttttctcaaatgctattgttctcttctctttctgtttatttgcaattgcagattttactaatcgttctctattttagGTTATTGAAGCTGGAGCCAATGCGCTGGTGGCAGGATCTGCAGTATTTGGAGCAAAGGATT
ATGCTGAAGCTATTAAGGGCATCAAGACCAGTAAGAGGCCAACCCCAGTTGCAGCATGAGGCCAGTTTTAATGAGTATACTTTTCTATACAGTATATGGTTCTGATTCTATTGCCAGATTAGCAGATTGATCTCTTGTTTCTGCTCAGAAGCAAGCCAGAACTGATGAGGGATCATTTGCCATTCTGTGGCAAGTGTAGT
ATTATTTATTATTTTATTCTCCATGTAACTTGCAAAATCATGCAAATAAGAATGGCTGTCAGCTTTACCAAAGTCGGCAAATTCTAGGAAAATCTTGAATGGAAATCTATTCCTTAAAAGCCATGAAATTAAGTAACTTCATATATAATCAGCTTCAATGTCGGCCTATGTCCAGATGCAGTATAAATGCACATGAATTT
ACAGTGTACTCATGACATGTAGAAAGGGAAACTCTTATTATGCTACTGTTTCTTTAGAGGATTCCAAACAC