NA ----> NA
Intron 1 GTAAGGGACA ... GGCGAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.1 | 73 | 8 | 14 |
| A2 | 17.71 | 72 | 14 | 17 |
| A3 | 16.49 | 81 | 4 | 28 |
| A4 | 19.69 | 51 | 6 | 19 |
| A5 | 13.04 | 30 | 3 | 6 |
| A6 | 15.86 | 557 | 65 | 145 |
| A7 | 13.75 | 486 | 43 | 112 |
| A8 | 14.85 | 450 | 49 | 108 |
| A9 | 15.06 | 516 | 72 | 111 |
| A10 | 16.69 | 372 | 48 | 101 |
>TRINITY_DN33856_c0_g1_i4 from sample A8 / Example spliced isoformCGGAGCCAAACTTCAACACCTGATCTAAGAAAATACCCCTAATCCAAGAAAATGGTTTACCATAATGTTGAACGGCCTAGTATCCTCATATGTGTAAATCACGTTTTTGATTTTGTTAAAAGGATATTTGGTTACTCCAAGTCCCCAACCAGATATATTTCAATAGCTCAACTTCTCTCCTATGCGGACGTCAGCTCAAC
CATAATAATCTGCATAAGCATAACCCGCATTCATAGAGCCAGTTTCCTGTTGGATTATACGGCACAATGGAGGGAGGCATACTGTCCCGAAGCCCTTCAAAGGATAACAATTCTGAAGATCCATGCACTTCTCAACAAAATGTCGAATCGCCTACATGTATCCATGAACATATCAGCAATCCCCACACAGTGGATGGCCT
TAGTCAACCCGCTGAACCCAATTGCAGTGATTCTCTTGTGGGCACCTCTGGAGACACAAGGCCACCTCCAGAGGAAAATACCCCAAACATTAAAAAGGATCCCGAACATCTAGGTACAGATACCCTACACTTGGAGGGTACCCAAATTATAGCTAGAGGGATTGCCTCTGTCTTCGATCCGGTTATGAGAGATTTTGATG
CCAGGGCGGAAGGAGCCCTCAAGAGCCAGGGCATTCTCAGAAGCAGCATTGACCGACTCACTCGAGAATTGGATAAACTATTGGAAGATGCACCTGCACCATTTATTACTCAGAATTCAACCAAGCTCTCAGTTGTTCGTAAGCGGGTTTCATCTTTAACTTCAACATTACAAGTTGTCCAGAAGCGCATTGACAACATT
GAGCGAATGCTTTCTGGGCAAGTCTTTATGGCGGCTTCTCAACCTACTTCTCTGGCTCATCTTCAGCGTGTGCATGCTTCAAATTTGAAAGGTGTAGAGAATGGTCCAAGTTCACATACGGGAGAATCATCAGAACCTCATCACAGTGATCAACATGACAAATTGAATGATTTGGATGCACAGAAAATATGATAGAGTCT
CAATTCAGATCAAATTTTCCAGTTCTTCTCAGGCGATGAGGATTCTGTTAGCTATCTGAGAAGGCTTTAAAAATTAGTTTCTCTTAAGTTCTAATTGCATGTTCATTTGAGTCCCGATCCAAACAAATGAGCAGCCTCTCAATAAATTTATGTTTTTCTTGTTTTGTTGTCTCCTCTTGTAAGTGTCCTTATATTTTCCT
CGGAAAAAATGGAATTTTATTATAAGAACAAA
>TRINITY_DN33856_c0_g1_i5 from sample A8 / Example unspliced isoform:CGGAGCCAAACTTCAACACCTGATCTAAGAAAATACCCCTAATCCAAGAAAATGGTTTACCATAATGTTGAACGGCCTAGTATCCTCATATGTGTAAATCACGTTTTTGATTTTGTTAAAAGGATATTTGGTTACTCCAAGTCCCCAACCAGATATATTTCAATAGCTCAACTTCTCTCCTATGCGGACGTCAGCTCAAC
CATAATAATCTGCATAAGCATAACCCGCATTCATAGAGCCAGTTTCCTGTTGGATTATACGGCACAATGGAGGGAGGCATACTGTCCCGAAGCCCTTCAAAGGATAACAATTCTGAAGATCCATGCACTTCTCAACAAAATGTCGAATCGCCTACATGTATCCATGAACATATCAGCAATCCCCACACAGTGGATGGCCT
TAGTCAACCCGCTGAACCCAATTGCAGTGATTCTCTTGTGGGCACCTCTGGAGACACAAGGCCACCTCCAGAGGAAAATACCCCAAACATTAAAAAGGATCCCGAACATCTAGGTACAGATACCCTACACTTGGAGGGTACCCAAATTATAGCTAGAGGGATTGCCTCTGTCTTCGATCCGGTTATGAGAGATTTTGATG
CCAGGGCGGAAGGAGCCCTCAAGAGCCAGGGCATTCTCAGAAGCAGCATTGACCGACTCACTCGAGgtaagggacagtttcctgaaacataactttacaattgactttttgtttattttcttggcgaatcagAATTGGATAAACTATTGGAAGATGCACCTGCACCATTTATTACTCAGAATTCAACCAAGCTCTCAGTT
GTTCGTAAGCGGGTTTCATCTTTAACTTCAACATTACAAGTTGTCCAGAAGCGCATTGACAACATTGAGCGAATGCTTTCTGGGCAAGTCTTTATGGCGGCTTCTCAACCTACTTCTCTGGCTCATCTTCAGCGTGTGCATGCTTCAAATTTGAAAGGTGTAGAGAATGGTCCAAGTTCACATACGGGAGAATCATCAGA
ACCTCATCACAGTGATCAACATGACAAATTGAATGATTTGGATGCACAGAAAATATGATGTATATATTGAACTTTACTTCCATTGTGGTAGTATATGAGAGAGCAATTTAAAATTTTCCCGGGAGAAATTCATGTCCTTTGCTGCTTCTGTATATTTTCATTTTACAGTCATGCTGTTTTGACATTACAAGTTGATAATA
TTTGCGTAGCCCTGTCCATGCCATCTGTGAATAAGTGTCATGGCATTGGATATCACTCTAGCTTTCAAGGCTTCTTAGATGAATGGGAATGTTCAATCTCTTATTATATGCACTGGACAGAATTGTTGGCAATGGACCCTTTGATATTTTTATGTACTAGAAGTTTTGTAGCTTAGTAATTTTCTGGGGGTTTTAAGCTG
GGAATGGATAGATAATGGTCTTATGTTCACTATTCCTCGACTGTTGTAATTCCAGTTTAGGAGAGGCTGCAAACTTGCTAAATGCTTGATGACTTGGTCAATGGACAACTAACTTGAAACCTAAATCAAGTTTAAGGAGGGATATATATATATATATATTACTTGTGATGATCAATTATTTGTAGACACAGAGTTCATGA
CTCATCTGACCATTTAGCTGCAAAATTTTATTTGAAAGACAGGAAGAGATCTGCATCATGATTAATAATAATAAACTTTCATATATTCCATGAA
Intron 2 GTTTGTAACC ... GCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.25 | 63 | 26 | 8 |
| A2 | 19.79 | 75 | 20 | 17 |
| A3 | 22.58 | 60 | 16 | 19 |
| A4 | 15.79 | 40 | 7 | 8 |
| A5 | 31.25 | 11 | 3 | 7 |
| A6 | 19.19 | 459 | 136 | 82 |
| A7 | 20.31 | 347.2 | 105 | 72 |
| A8 | 21.55 | 442.4 | 127 | 116 |
| A9 | 17.79 | 353.4 | 92 | 61 |
| A10 | 20.06 | 285 | 90 | 53 |
>TRINITY_DN101175_c0_g1_i1 from sample A2 / Example spliced isoformACGGCCTAGTATCCTCATATGTGTAAATCACGTTTTTGATTTTGTTAAAAGGATATTTGGTTACTCCAAGTCCCCAACCAGATATATTTCAATAGCTCAACTTCTCTCCTATGCGGACGTCAGCTCAACCATAATAATCTGCATAAGCATAACCCGCATTCATAGAGCCAGTTTCCTGTTGGATTATACGGCACAATGGA
GGGAGGCATACTGTCCCGAAGCCCTTCAAAGGATAACAATTCTGAAGATCCATGCACTTCTCAACAAAATGTCGAATCGCCTACATGTATCCATGAACATATCAGCAATCCCCACACAGTGGATGGCCTTAGTCAACCCGCTGAACCCAATTGCAGTGATTCTCTTGTGGGCACCTCTGGAGACACAAGGCCACCTCCAG
AGGAAAATACCCCAAACATTAAAAAGGATCCCGAACATCTAGGTACAGATACCCTACACTTGGAGGGTACCCAAATTATAGCTAGAGGGATTGCCTCTGTCTTCGATCCGGTTATGAGAGATTTTGATGCCAGGGCGGAAGGAGCCCTCAAGAGCCAGGGCATTCTCAGAAGCAGCATTGACCGACTCACTCGAGAATTG
GATAAACTATTGGAAGATGCACCTGCACCATTTATTACTCAGAATTCAACCAAGCTCTCAGTTGTTCGTAAGCGGGTTTCATCTTTAACTTCAACATTACAAGTTGTCCAGAAGCGCATTGACAACATTGAGCGAATGCTTTCTGGGCAAGTCTTTATGGCGGCTTCTCAACCTACTTCTCTGGCTCATCTTCAGCGTGT
GCATGCTTCAAATTTGAAAGGTGTAGAGAATGGTCCAAGTTCACATACGGGAGAATCATCAGAACCTCATCACAGTGATCAACATGACAAATTGAATGATTTGGATGCACAGAAAATATGATGTATATATTGAACTTTACTTCCATTGTGGTAGTATATGAGAGAGCAATTTAAAATTTTCCCGGGAGAAATTCATGTCC
TTTGCTGCTTCTGTATATTTTCATTTTACAGTCATGCTGTTTTGACATTACAAGTTGATAATATTTGCGTAGCCCTGTCCATGCCATCTGTGAATAAGTGTCATGGCATTGGATATCACTCTAGCTTTCAAGGCTTCTTAGATGAATGGGAATGTTCAATCTCTTATTATATGCACTGGACAGAATTGTTGGCAATGGAC
CCTTTGATATTTTTATGTACTAGAAGTTTTGTAGCTTAGTAATTTTCTGGGGGTTTTAAGCTGGGAATGGATAGATAATGGTCTTATGTTCACTATTCCTCGACTGTTGTAATTCCAGTTTAGGAGAGGCTGCAAACTTGCTAAATGCTTGATGACTTGGTCAATGGACAACTAACTTGAAACCTAAATCAAGTTTAAGG
AGGGATATATATATATATATATTACTTGTGATGATCAATTATTTGTAGACACAGAGTTCATGACTCATCTGACCATTTAGCTGCAAAATTTTATTTGAAAGACAGGAAGAGATCTGCATCATGATTAATAATAATAAACTTTCATATATTCCAT
>TRINITY_DN101175_c0_g1_i3 from sample A2 / Example unspliced isoform:ACGGCCTAGTATCCTCATATGTGTAAATCACGTTTTTGATTTTGTTAAAAGGATATTTGGTTACTCCAAGTCCCCAACCAGATATATTTCAATAGCTCAACTTCTCTCCTATGCGGACGTCAGCTCAACCATAATAATCTGCATAAGCATAACCCGCATTCATAGAGCCAGTTTCCTGTTGGATTATACGGCACAATGGA
GGGAGGCATACTGTCCCGAAGCCCTTCAAAGGATAACAATTCTGAAGATCCATGCACTTCTCAACAAAATGTCGAATCGCCTACATGTATCCATGAACATATCAGCAATCCCCACACAGTGGATGGCCTTAGTCAACCCGCTGAACCCAATTGCAGTGATTCTCTTGTGGGCACCTCTGGAGACACAAGGCCACCTCCAG
AGGAAAATACCCCAAACATTAAAAAGGATCCCGAACATCTAGGTACAGATACCCTACACTTGGAGGGTACCCAAATTATAGCTAGAGGGATTGCCTCTGTCTTCGATCCGGTTATGAGAGATTTTGATGCCAGGGCGGAAGGAGCCCTCAAGAGCCAGGGCATTCTCAGAAGCAGCATTGACCGACTCACTCGAGAATTG
GATAAACTATTGGAAGATGCACCTGCACCATTTATTACTCAGAATTCAACCAAGCTCTCAGTTGTTCGTAAGCGGGTTTCATCTTTAACTTCAACATTACAAGTTGTCCAGAAGCGCATTGACAACATTGAGCGAATGCTTTCTGGGCAAGTCTTTATGGCGGCTTCTCAACCTACTTCTCTGGCTCATCTTCAGCGTGT
GCATGCTTCAAATTTGAAAGgtttgtaacccggaaatcactaactatgttagagagtgcatcagtttcattttactaaagtctgcttttgcagGTGTAGAGAATGGTCCAAGTTCACATACGGGAGAATCATCAGAACCTCATCACAGTGATCAACATGACAAATTGAATGATTTGGATGCACAGAAAATATGATGTATA
TATTGAACTTTACTTCCATTGTGGTAGTATATGAGAGAGCAATTTAAAATTTTCCCGGGAGAAATTCATGTCCTTTGCTGCTTCTGTATATTTTCATTTTACAGTCATGCTGTTTTGACATTACAAGTTGATAATATTTGCGTAGCCCTGTCCATGCCATCTGTGAATAAGTGTCATGGCATTGGATATCACTCTAGCTT
TCAAGGCTTCTTAGATGAATGGGAATGTTCAATCTCTTATTATATGCACTGGACAGAATTGTTGGCAATGGACCCTTTGATATTTTTATGTACTAGAAGTTTTGTAGCTTAGTAATTTTCTGGGGGTTTTAAGCTGGGAATG