sp|Q501D2|IQD30_ARATH ----> Protein IQ-DOMAIN 30
Intron 1 GTAGGAAGTC ... TTTATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.29 | 5.2 | 0 | 1.2 |
| A2 | 9.09 | 10 | 0 | 1 |
| A3 | 7.35 | 28.8 | 1 | 2.6 |
| A4 | 12.95 | 9.2 | 0.6 | 1.4 |
| A5 | 27 | 12.2 | 2.4 | 4.6 |
| A6 | 8.01 | 48.6 | 2.4 | 4.8 |
| A7 | 7.3 | 44.6 | 1 | 4.4 |
| A8 | 12.53 | 52.4 | 1.4 | 8 |
| A9 | 10.58 | 64.8 | 2.6 | 8.2 |
| A10 | 4.55 | 47.8 | 2.6 | 2.4 |
>TRINITY_DN45539_c0_g1_i6 from sample A8 / Example spliced isoformATTAAAGAAAAACCATCAGATGCTTCTGTTTCAGAGGTTGTTGACACTGTTCATGATCTTGAGAGAATAAGGGAAGAATCTGCAGCCATCAAAGCACAGACAGCTTTCAGGGGCTATCTGGCTAGGCGAGCATTTCGAGCCCTTAGAGGCCTTATAAGACTTCAAGCCCTTGTCCGTGGGCACATGGTTAGGAGACAGGC
TGCGGGAAGTTTACGCTGTTTACAAGCAATTATCAGATTGCAAGCTTTAGTCCGTGGTCGCCGAGTTAGAATGTCGGAACAAGGATTGGCTGTACAGGAGACGCTTGAACTTAGGCGCAGACAAAATCCATCAAGAGTAAATGAATTGGAGAGAAAAAGTTCCTCGATCTTTGTGGTCAATGGTGCTTCCCGATCCGAGA
AGCTGTTAGCAAATGCATTTGCTCGTCAGATTCTAGAGTCTGCACCCATGACCAAGTCTATACGAATTCATTGTGGTCCTGGTGATTCCAATTCGGGATGGGTCTGGTTGGAACGTTGGATGTCTGCTCAACCTTGGAGTTCATCTGGGCGGACTAGTAATAGCTCAAATCTGTGGTCTCAGAAGACAAGTGAGAATGTG
TCCTCAACTGAGGCTAAAGTAGGAAGGCCGAAGTGCAACATGGGAAGGGTACCCAATTCAACGCAGGAGCATATTTCAAATCAGTTTGATATGGAATCAGAGTAGCCAAAGCGTGGCTTGAGAAAGGTATCAAGATCAGCAGTGGATTCTGTTTCTGATCAACCTGATGTTGACACTGAGAGACCTAAACAGAGTTTTAG
AAGAGGGTTAAATGCAGCTTGAGAAAGGTATCACATCCGATGCGGAGTCTGTCTCAGATCAGCCAGAGGTAGAAATGGAAAAGGTTAAATGCAGCTTGAGAAAGATATCAGCTTCAGGAGTGGATTCTGCATCAGAACCACCAGAGGTCGAGGCTGAGAAAGCTAAGCACAGCATGAGAAAGGTATCAAATTCAACAGTG
GATTCAGTGTCAGATCATCTGGAGGTGGAAACTGAGATGTCCAAGCGCAACTTGAGAAAGGTTTCAAAGCCAACATTGGATCCTATTTCTGATCAACTCAGCATGCAGTCTACAATGGGCAGCTCCATGAATATAACTGGAAATGATGAACCAATCCAGCTTGTAGCCCTGGATGAGACAGTTTCAGTTGTTCAGGAGAC
ATCTCCAGTTCAGCATTCAACAAGTCCAACTGAAAGCATTGCACGAGACGATGCCTCATTGCAACAAAGGATGGCTTCTTCTGTTCTAAATGGAGACTTTACACCCACAAAGCATGACAGTGTAGACCTGACCCCCAAAAATGAGCCCGAGACTCCTGTGGTAGAGCAGAAGTCTACTAGACGACGTAGCTCATTTGGAT
CTGTTAAGACTGAGCATACTGAACACGCTTCACAAGGCAGTCCATCGATTCCAAGTTACATGGCTGCTACTGAATCGGCAAAAGCAAAGCTTCGTGGTCATTCTCCAAGGTCGAGTCCAGATGTTCAGGAGAAGGGAACTCCTATAATACGAAGACATTCTCTTCCAGCAGCTCCTAATGGGAAACCAAATTCAGTATCA
CCAAGGACTCAGAGACTGTTGCCACAAGTTCAATCAACCAGGGGGCACATGAAAAGTGATCGATCTCTCGGGAATGAAAAAGCAATCCCTGTTCAGGTTGATTGGCGAAGGTGACGAGTATTTGAGCTTCTATCGATATTTTGTGCATCTGGTGTGTCTTTTCAGTTAGTAAGGAATGAGAATCTCTGGAGAGACCTTTT
ATATATTACGAGTTTAGATTAAGTGTGCTGTACTTGATATTCACTCTAAATGTCTTGTGAGCTCTAAGGTGCACCAAATTATGCTGTATATACAAAGAATATACCACATTGCATATTCATGATGTGACTGCCAGGGTACATTTTTATGGGTTCACATGGGACAGCTGATTCATTGACTGTAAACTGTCTGATTGCAGATT
TTTTAGCTTCAAAATGTTTTGAGAAGGGTTTGGATATTATGTATGCCTTGAGCTAATATCTGTTCGATTTTATGATGTATAATAATATGGGTTTGACTTCAGAGGCACTGAAACTAGCTTTTTTATAACTTAATGCTACAATGATGTGGTGTGTAAGCATGCACTGATGATATAACTTGGGTAAATTTGAG
>TRINITY_DN45539_c0_g1_i5 from sample A8 / Example unspliced isoform:ATTAAAGAAAAACCATCAGATGCTTCTGTTTCAGAGGTTGTTGACACTGTTCATGATCTTGAGAGAATAAGGGAAGAATCTGCAGCCATCAAAGCACAGACAGCTTTCAGGGGCTATCTGGCTAGGCGAGCATTTCGAGCCCTTAGAGGCCTTATAAGACTTCAAGCCCTTGTCCGTGGGCACATGGTTAGGAGACAGGC
TGCGGGAAGTTTACGCTGTTTACAAGCAATTATCAGATTGCAAGCTTTAGTCCGTGGTCGCCGAGTTAGAATGTCGGAACAAGGATTGGCTGTACAGGAGACGCTTGAACTTAGGCGCAGACAAAATCCATCAAGAGTAAATGAATTGGAGAGAAAAAGTTCCTCGATCTTTGTGGTCAATGGTGCTTCCCGATCCGAGA
AGCTGTTAGCAAATGCATTTGCTCGTCAGATTCTAGAGTCTGCACCCATGACCAAGTCTATACGAATTCATTGTGGTCCTGGTGATTCCAATTCGGGATGGGTCTGGTTGGAACGTTGGATGTCTGCTCAACCTTGGAGTTCATCTGGGCGGACTAGTAATAGCTCAAATCTGTGGTCTCAGAAGACAAGTGAGAATGTG
TCCTCAACTGAGGCTAAAGTAGGAAGGCCGAAGTGCAACATGGGAAGGGTACCCAATTCAACGCAGGAGCATATTTCAAATCAGTTTGATATGGAATCAGAGTAGCCAAAGCGTGGCTTGAGAAAGGTATCAAGATCAGCAGTGGATTCTGTTTCTGATCAACCTGATGTTGACACTGAGAGACCTAAACAGAGTTTTAG
AAGAGGGTTAAATGCAGCTTGAGAAAGGTATCACATCCGATGCGGAGTCTGTCTCAGATCAGCCAGAGGTAGAAATGGAAAAGGTTAAATGCAGCTTGAGAAAGATATCAGCTTCAGGAGTGGATTCTGCATCAGAACCACCAGAGGTCGAGGCTGAGAAAGCTAAGCACAGCATGAGAAAGGTATCAAATTCAACAGTG
GATTCAGTGTCAGATCATCTGGAGGTGGAAACTGAGATGTCCAAGCGCAACTTGAGAAAGGTTTCAAAGCCAACATTGGATCCTATTTCTGATCAACTCAGCATGCAGTCTACAATGGGCAGCTCCATGAATATAACTGGAAATGATGAACCAATCCAGCTTGTAGCCCTGGATGAGACAGTTTCAGTTGTTCAGGAGAC
ATCTCCAGTTCAGCATTCAACAAGTCCAACTGAAAGCATTGCACGAGACGATGCCTCATTGCAACAAAGGATGGCTTCTTCTGTTCTAAATGGAGACTTTACACCCACAAAGCATGACAGTGTAGACCTGACCCCCAAAAATGAGCCCGAGACTCCTGTGGTAGAGCAGAAGTCTACTAGACGACGTAGCTCATTTGGAT
CTGTTAAGACTGAGCATACTGAACACGCTTCACAAGGCAGTCCATCGATTCCAAGTTACATGGCTGCTACTGAATCGGCAAAAGCAAAGCTTCGTGGTCATTCTCCAAGGTCGAGTCCAGATGTTCAGGAGAAGGGAACTCCTATAATACGAAGACATTCTCTTCCAGCAGCTCCTAATGGGAAACCAAATTCAGTATCA
CCAAGGACTCAGAGACTGTTGCCACAAGTTCAATCAACCAGGGGGCACATGAAAAGTGATCGATCTCTCGGGAATGgtaggaagtcagtctaatgatttggagatttatttgttcatctttatttggagtaaatttctttcaatgctgacattttgtctttttttatttcagAAAAAGCAATCCCTGTTCAGGTTGATTG
GCGAAGGTGACGAGTATTTGAGCTTCTATCGATATTTTGTGCATCTGGTGTGTCTTTTCAGTTAGTAAGGAATGAGAATCTCTGGAGAGACCTTTTATATATTACGAGTTTAGATTAAGTGTGCTGTACTTGATATTCACTCTAAATGTCTTGTGAGCTCTAAGGTGCACCAAATTATGCTGTATATACAAAGAATATAC
CACATTGCATATTCATGATGTGACTGCCAGGGTACATTTTTATGGGTTCACATGGGACAGCTGATTCATTGACTGTAAACTGTCTGATTGCAGATTTTTTAGCTTCAAAATGTTTTGAGAAGGGTTTGGATATTATGTATGCCTTGAGCTAATATCTGTTCGATTTTATGATGTATAATAATATGGGTTTGACTTCAGAG
GCACTGAAACTAGCTTTTTTATAACTTAATGCTACAATGATGTGGTGTGTAAGCATGCACTGATGATATAACTTGGGTAAATTTGAG
Intron 2 GTGAACCTTA ... TGTGATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.19 | 33 | 9.5 | 3 |
| A2 | 16.13 | 23 | 5 | 1.5 |
| A3 | 15.51 | 15.5 | 3.1 | 1.8 |
| A4 | 19.23 | 9 | 2.5 | 0.5 |
| A5 | 10.42 | 10 | 1.3 | 0 |
| A6 | 43.75 | 2 | 1.6 | 0 |
| A7 | 9.79 | 11 | 1.4 | 1.3 |
| A8 | 28.57 | 5 | 2 | 2.3 |
| A9 | 13.39 | 11 | 1.9 | 0.5 |
| A10 | 20.35 | 29 | 8.8 | 0.8 |
>TRINITY_DN127398_c0_g1_i5 from sample A1 / Example spliced isoformCGACAGAGTAGTTGAGTGGCTTCTGAGGCTCTGTTAAGGTCTAAGTGCTACCCGTCATCATATTTGTATGAGCATTGCGAGCTTTCTCTGGTTTTGCTGCAGTGGGTATTCAAGTTTTGTGAGAATTTCACGGCATTGAATGGTTGATAGGCCGAGATCGGAGTAGAGTTATTTATGGGGGAATGCTTAGAGTAGCAGTG
GATGGTACAAGGTATATGGTATTGCTGAGCCGCATTGCTTGAGAACGAAGGCTCACAATAATCCCTGGTACGTTACAGATCTCTCGTTAATTTTCCCCTCCTGATGCTTCAGCTTTGCAGTTGGGATGACTAAACTGAGCAAAAATATATTCCCACTTGTTCTTCTAAGTCTTCACAGGCCTTGTAATATAAACTGTTTT
ACTTTTAGTTTGTCGTTGCAGAGAACTGAGACAGATCCTTGCAGCCATGGGGAAGCATCCTGGGAAATGGCTCAAAACTATCTTATTTGGCAAAAAGTCCTCCAGATCTCAGTCTTCTGAGAAGCTGACGAAGAGGGATAGTGGCAGAGAAAATGGGAAGAAAGCATCAAAGGATAAGGACACAAAAGTTTTGGAGAATG
AGTCAATGCAAGACCAGGTTCCAAATACCATTGTGGCATCAGATCCATCATCTATGGGTAGAGAGATAGAACAGCATATTCCCCTCCGAGATCGGAGCAAGCAGGCAGTATTTTCTGGCACAGAGAAAAATTTGTCCACATCAACTGATAAAGCAGTCACTCTTCCTGCAATTGAAATTAAAGAAAAACCATCAGATGCT
TCTGTTTCAGAGGTTGTTGACACTGTTCATGATCTTGAGAGAATAAGGGAAGAATCTGCAGCCATCAAAGCACAGACAGCTTTCAGGGGCTATCTGGCTAGGCGAGCATTTCGAGCCCTTAGAGGCCTTATAAGACTTCAAGCCCTTGTCCGTGGGCACATGGTTAGGAGACAGGCTGCGGGAAGTTTACGCTGTTTACA
AGCAATTATCAGATTGCAAGCTTTAGTCCGTGGTCGCCGAGTTAGAATGTCGGAACAAGGATTGGCTGTACAGGAGACGCTTGAACTTAGGCGCAGACAAAATCCATCAAGAGTAAATGAATTGGAGAGAAAAAGTTCCTCGATCTTTGTGGTCAATGGTGCTTCCCGATCCGAGAAGCTGTTAGCAAATGCATTTGCTC
GTCAGATTCTAGAGTCTGCACCCATGACCAAGTCTATAGTTATACGAATTCATTGTGGTCCTGGTGATTCCAATTCGGGATGGGTCTGGTTGGAACGTTGGATGTCTGCTCAACCTTGGAGTTCATCTGGGCAGACTAGTAATAACTCAAATCTGAGGTCTCAGAAGACAACTGAGAATGTACCTTCAACTGAGGCTGAA
GTAGGAAGGCCGAAGCGCAGTGTGAGAAGGGTACCAAATTCAACGCAGGAGCATATTTCAAATCAGTTTGATATGGAATCAGAGAAGCCAAAGCGTGGCTTGAGAAAGACGTTAAGATCAGCAGTGGATTCTGTTTCTGATCAACCTGATGTTGATGCTGAGAGACCTAAACGGACTTTTAGAAGAGGGTTAAACTCAGC
ACAGGATTCTGTTTCAGATCAACCTGAGGTTGAAGCTGAGAAGGTTAAGCGTAACTTGAGAAAGGTATCACATCCGATGGCGGAGTCTGTCTCAGATCATCCGGAGGTAGAAATGGAGAAGGTTAAACGCAGCTTGAGAAAAATATCAGCTTCAGGAGTGGATTC
>TRINITY_DN127398_c0_g1_i3 from sample A1 / Example unspliced isoform:CGACAGAGTAGTTGAGTGGCTTCTGAGGCTCTGTTAAGGTCTAAGTGCTACCCGTCATCATATTTGTATGAGCATTGCGAGCTTTCTCTGGTTTTGCTGCAGTGGGTATTCAAGTTTTGTGAGAATTTCACGGCATTGAATGGTTGATAGGCCGAGATCGGAGTAGAGTTATTTATGGGGGAATGCTTAGAGTAGCAGTG
GATGGTACAAGGTATATGGTATTGCTGAGCCGCATTGCTTGAGAACGAAGGCTCACAATAATCCCTGTTTGTCGTTGCAGAGAACTGAGACAGATCCTTGCAGCCATGGGGAAGCATCCTGGGAAATGGCTCAAAACTATCTTATTTGGCAAAAAGTCCTCCAGATCTCAGTCTTCTGAGAAGCTGACGAAGAGGGATAG
TGGCAGAGAAAATGGGAAGAAAGCATCAAAGGATAAGGACACAAAAGTTTTGGAGAATGAGTCAATGCAAGACCAGGTTCCAAATACCATTGTGGCATCAGATCCATCATCTATGGGTAGAGAGATAGAACAGCATATTCCCCTCCGAGATCGGAGCAAGCAGGCAGTATTTTCTGGCACAGAGAAAAATTTGTCCACAT
CAACTGATAAAGCAGTCACTCTTCCTGCAATTGAAATTAAAGAAAAACCATCAGATGCTTCTGTTTCAGAGGTTGTTGACACTGTTCATGATCTTGAGAGAATAAGGGAAGAATCTGCAGCCATCAAAGCACAGACAGCTTTCAGGGGCTATCTGGCTAGGCGAGCATTTCGAGCCCTTAGAGGCCTTATAAGACTTCAA
GCCCTTGTCCGTGGGCACATGGTTAGGAGACAGGCTGCGGGAAGTTTACGCTGTTTACAAGCAATTATCAGATTGCAAGCTTTAGTCCGTGGTCGCCGAGTTAGAATGTCGGAACAAGGATTGGCTGTACAGGAGACGCTTGAACTTAGGCGCAGACAAAATCCATCAAGAGTAAATGAATTGGAGAGAAAAAGTTCCTT
GATCTTTGTGGTCAATGGTGCTTCCCGATCCGAGAAGCTGTTAGCAAATGCATTTGCTCGTCAGgtgaaccttaaatttgttttaatagttcaggacaattcatttgctgacattgctctaataccattcatttacattgcaatagtattaatattaatttggatacttctgtgataaagATTCTAGAGTCTGC
Intron 3 GTACGTTACA ... GTCGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.13 | 21 | 12 | 15 |
| A2 | 27.03 | 27 | 10 | 10 |
| A3 | 23.6 | 34 | 4 | 17 |
| A4 | 35.85 | 17 | 9 | 10 |
| A5 | 29.41 | 24 | 10 | 10 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 25.81 | 23 | 13 | 3 |
| A8 | 12.5 | 7 | 1 | 1 |
| A9 | 9.09 | 10 | 1 | 1 |
| A10 | 20 | 2 | 1 | 0 |
>TRINITY_DN127398_c0_g1_i7 from sample A1 / Example spliced isoformCGACAGAGTAGTTGAGTGGCTTCTGAGGCTCTGTTAAGGTCTAAGTGCTACCCGTCATCATATTTGTATGAGCATTGCGAGCTTTCTCTGGTTTTGCTGCAGTGGGTATTCAAGTTTTGTGAGAATTTCACGGCATTGAATGGTTGATAGGCCGAGATCGGAGTAGAGTTATTTATGGGGGAATGCTTAGAGTAGCAGTG
GATGGTACAAGGTATATGGTATTGCTGAGCCGCATTGCTTGAGAACGAAGGCTCACAATAATCCCTGAGAACTGAGACAGATCCTTGCAGCCATGGGGAAGCATCCTGGGAAATGGCTCAAAACTATCTTATTTGGCAAAAAGTCCTCCAGATCTCAGTCTTCTGAGAAGCTGACGAAGAGGGATAGTGGCAGAGAAAAT
GGGAAGAAAGCATCAAAGGATAAGGACACAAAAGTTTTGGAGAATGAGTCAATGCAAGACCAGGTTCCAAATACCATTGTGGCATCAGATCCATCATCTATGGGTAGAGAGATAGAACAGCATATTCCCCTCCGAGATCGGAGCAAGCAGGCAGTATTTTCTGGCACAGAGAAAAATTTGTCCACATCAACTGATAAAGC
AGTCACTCTTCCTGCAATTGAAATTAAAGAAAAACCATCAGATGCTTCTGTTTCAGAGGTTGTTGACACTGTTCATGATCTTGAGAGAATAAGGGAAGAATCTGCAGCCATCAAAGCACAGACAGCTTTCAGGGGCTATCTGGCTAGGCGAGCATTTCGAGCCCTTAGAGGCCTTATAAGACTTCAAGCCCTTGTCCGTG
GGCACATGGTTAGGAGACAGGCTGCGGGAAGTTTACGCTGTTTACAAGCAATTATCAGATTGCAAGCTTTAGTCCGTGGTCGCCGAGTTAGAATGTCGGAACAAGGATTGGCTGTACAGGAGACGCTTGAACTTAGGCGCAGACAAAATCCATCAAGAGTAAATGAATTGGAGAGAAAAAGTTCCTCGATCTTTGTGGTC
AATGGTGCTTCCCGATCCGAGAAGCTGTTAGCAAATGCATTTGCTCGTCAGATTCTAGAGTCTGCACCCATGACCAAGTCTATAGTTATACGAATTCATTGTGGTCCTGGTGATTCCAATTCGGGATGGGTCTGGTTGGAACGTTGGATGTCTGCTCAACCTTGGAGTTCATCTGGGCAGACTAGTAATAACTCAAATCT
GAGGTCTCAGAAGACAACTGAGAATGTACCTTCAACTGAGGCTGAAGTAGGAAGGCCGAAGCGCAGTGTGAGAAGGGTACCAAATTCAACGCAGGAGCATATTTCAAATCAGTTTGATATGGAATCAGAGAAGCCAAAGCGTGGCTTGAGAAAGACGTTAAGATCAGCAGTGGATTCTGTTTCTGATCAACCTGATGTTG
ATGCTGAGAGACCTAAACGGACTTTTAGAAGAGGGTTAAACTCAGCACAGGATTCTGTTTCAGATCAACCTGAGGTTGAAGCTGAGAAGGTTAAGCGTAACTTGAGAAAGGTATCACATCCGATGGCGGAGTCTGTCTCAGATCATCCGGAGGTAGAAATGGAGAAGGTTAAACGCAGCTTGAGAAAAATATCAGCTTCA
GGAGTGGATTC
>TRINITY_DN127398_c0_g1_i5 from sample A1 / Example unspliced isoform:CGACAGAGTAGTTGAGTGGCTTCTGAGGCTCTGTTAAGGTCTAAGTGCTACCCGTCATCATATTTGTATGAGCATTGCGAGCTTTCTCTGGTTTTGCTGCAGTGGGTATTCAAGTTTTGTGAGAATTTCACGGCATTGAATGGTTGATAGGCCGAGATCGGAGTAGAGTTATTTATGGGGGAATGCTTAGAGTAGCAGTG
GATGGTACAAGGTATATGGTATTGCTGAGCCGCATTGCTTGAGAACGAAGGCTCACAATAATCCCTGgtacgttacagatctctcgttaattttcccctcctgatgcttcagctttgcagttgggatgactaaactgagcaaaaatatattcccacttgttcttctaagtcttcacaggccttgtaatataaactgtttt
acttttagtttgtcgttgcagAGAACTGAGACAGATCCTTGCAGCCATGGGGAAGCATCCTGGGAAATGGCTCAAAACTATCTTATTTGGCAAAAAGTCCTCCAGATCTCAGTCTTCTGAGAAGCTGACGAAGAGGGATAGTGGCAGAGAAAATGGGAAGAAAGCATCAAAGGATAAGGACACAAAAGTTTTGGAGAATG
AGTCAATGCAAGACCAGGTTCCAAATACCATTGTGGCATCAGATCCATCATCTATGGGTAGAGAGATAGAACAGCATATTCCCCTCCGAGATCGGAGCAAGCAGGCAGTATTTTCTGGCACAGAGAAAAATTTGTCCACATCAACTGATAAAGCAGTCACTCTTCCTGCAATTGAAATTAAAGAAAAACCATCAGATGCT
TCTGTTTCAGAGGTTGTTGACACTGTTCATGATCTTGAGAGAATAAGGGAAGAATCTGCAGCCATCAAAGCACAGACAGCTTTCAGGGGCTATCTGGCTAGGCGAGCATTTCGAGCCCTTAGAGGCCTTATAAGACTTCAAGCCCTTGTCCGTGGGCACATGGTTAGGAGACAGGCTGCGGGAAGTTTACGCTGTTTACA
AGCAATTATCAGATTGCAAGCTTTAGTCCGTGGTCGCCGAGTTAGAATGTCGGAACAAGGATTGGCTGTACAGGAGACGCTTGAACTTAGGCGCAGACAAAATCCATCAAGAGTAAATGAATTGGAGAGAAAAAGTTCCTCGATCTTTGTGGTCAATGGTGCTTCCCGATCCGAGAAGCTGTTAGCAAATGCATTTGCTC
GTCAGATTCTAGAGTCTGCACCCATGACCAAGTCTATAGTTATACGAATTCATTGTGGTCCTGGTGATTCCAATTCGGGATGGGTCTGGTTGGAACGTTGGATGTCTGCTCAACCTTGGAGTTCATCTGGGCAGACTAGTAATAACTCAAATCTGAGGTCTCAGAAGACAACTGAGAATGTACCTTCAACTGAGGCTGAA
GTAGGAAGGCCGAAGCGCAGTGTGAGAAGGGTACCAAATTCAACGCAGGAGCATATTTCAAATCAGTTTGATATGGAATCAGAGAAGCCAAAGCGTGGCTTGAGAAAGACGTTAAGATCAGCAGTGGATTCTGTTTCTGATCAACCTGATGTTGATGCTGAGAGACCTAAACGGACTTTTAGAAGAGGGTTAAACTCAGC
ACAGGATTCTGTTTCAGATCAACCTGAGGTTGAAGCTGAGAAGGTTAAGCGTAACTTGAGAAAGGTATCACATCCGATGGCGGAGTCTGTCTCAGATCATCCGGAGGTAGAAATGGAGAAGGTTAAACGCAGCTTGAGAAAAATATCAGCTTCAGGAGTGGATTC
Intron 4 GTACGTTACA ... TTACCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 14 | 12 | 9 |
| A2 | 23.33 | 23 | 10 | 4 |
| A3 | 21.52 | 31 | 4 | 13 |
| A4 | 35.85 | 17 | 9 | 10 |
| A5 | 29.63 | 19 | 10 | 6 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 25.81 | 23 | 13 | 3 |
| A8 | 12.5 | 7 | 1 | 1 |
| A9 | 5.26 | 9 | 1 | 0 |
| A10 | 20 | 2 | 1 | 0 |
>TRINITY_DN127398_c0_g1_i4 from sample A1 / Example spliced isoformCGACAGAGTAGTTGAGTGGCTTCTGAGGCTCTGTTAAGGTCTAAGTGCTACCCGTCATCATATTTGTATGAGCATTGCGAGCTTTCTCTGGTTTTGCTGCAGTGGGTATTCAAGTTTTGTGAGAATTTCACGGCATTGAATGGTTGATAGGCCGAGATCGGAGTAGAGTTATTTATGGGGGAATGCTTAGAGTAGCAGTG
GATGGTACAAGGTATATGGTATTGCTGAGCCGCATTGCTTGAGAACGAAGGCTCACAATAATCCCTGTTTGTCGTTGCAGAGAACTGAGACAGATCCTTGCAGCCATGGGGAAGCATCCTGGGAAATGGCTCAAAACTATCTTATTTGGCAAAAAGTCCTCCAGATCTCAGTCTTCTGAGAAGCTGACGAAGAGGGATAG
TGGCAGAGAAAATGGGAAGAAAGCATCAAAGGATAAGGACACAAAAGTTTTGGAGAATGAGTCAATGCAAGACCAGGTTCCAAATACCATTGTGGCATCAGATCCATCATCTATGGGTAGAGAGATAGAACAGCATATTCCCCTCCGAGATCGGAGCAAGCAGGCAGTATTTTCTGGCACAGAGAAAAATTTGTCCACAT
CAACTGATAAAGCAGTCACTCTTCCTGCAATTGAAATTAAAGAAAAACCATCAGATGCTTCTGTTTCAGAGGTTGTTGACACTGTTCATGATCTTGAGAGAATAAGGGAAGAATCTGCAGCCATCAAAGCACAGACAGCTTTCAGGGGCTATCTGGCTAGGCGAGCATTTCGAGCCCTTAGAGGCCTTATAAGACTTCAA
GCCCTTGTCCGTGGGCACATGGTTAGGAGACAGGCTGCGGGAAGTTTACGCTGTTTACAAGCAATTATCAGATTGCAAGCTTTAGTCCGTGGTCGCCGAGTTAGAATGTCGGAACAAGGATTGGCTGTACAGGAGACGCTTGAACTTAGGCGCAGACAAAATCCATCAAGAGTAAATGAATTGGAGAGAAAAAGTTCCTC
GATCTTTGTGGTCAATGGTGCTTCCCGATCCGAGAAGCTGTTAGCAAATGCATTTGCTCGTCAGATTCTAGAGTCTGCACCCATGACCAAGTCTATAGTTATACGAATTCATTGTGGTCCTGGTGATTCCAATTCGGGATGGGTCTGGTTGGAACGTTGGATGTCTGCTCAACCTTGGAGTTCATCTGGGCAGACTAGTA
ATAACTCAAATCTGAGGTCTCAGAAGACAACTGAGAATGTACCTTCAACTGAGGCTGAAGTAGGAAGGCCGAAGCGCAGTGTGAGAAGGGTACCAAATTCAACGCAGGAGCATATTTCAAATCAGTTTGATATGGAATCAGAGAAGCCAAAGCGTGGCTTGAGAAAGACGTTAAGATCAGCAGTGGATTCTGTTTCTGAT
CAACCTGATGTTGATGCTGAGAGACCTAAACGGACTTTTAGAAGAGGGTTAAACTCAGCACAGGATTCTGTTTCAGATCAACCTGAGGTTGAAGCTGAGAAGGTTAAGCGTAACTTGAGAAAGGTATCACATCCGATGGCGGAGTCTGTCTCAGATCATCCGGAGGTAGAAATGGAGAAGGTTAAACGCAGCTTGAGAAA
AATATCAGCTTCAGGAGTGGATTC
>TRINITY_DN127398_c0_g1_i5 from sample A1 / Example unspliced isoform:CGACAGAGTAGTTGAGTGGCTTCTGAGGCTCTGTTAAGGTCTAAGTGCTACCCGTCATCATATTTGTATGAGCATTGCGAGCTTTCTCTGGTTTTGCTGCAGTGGGTATTCAAGTTTTGTGAGAATTTCACGGCATTGAATGGTTGATAGGCCGAGATCGGAGTAGAGTTATTTATGGGGGAATGCTTAGAGTAGCAGTG
GATGGTACAAGGTATATGGTATTGCTGAGCCGCATTGCTTGAGAACGAAGGCTCACAATAATCCCTGgtacgttacagatctctcgttaattttcccctcctgatgcttcagctttgcagttgggatgactaaactgagcaaaaatatattcccacttgttcttctaagtcttcacaggccttgtaatataaactgtttt
acttttagTTTGTCGTTGCAGAGAACTGAGACAGATCCTTGCAGCCATGGGGAAGCATCCTGGGAAATGGCTCAAAACTATCTTATTTGGCAAAAAGTCCTCCAGATCTCAGTCTTCTGAGAAGCTGACGAAGAGGGATAGTGGCAGAGAAAATGGGAAGAAAGCATCAAAGGATAAGGACACAAAAGTTTTGGAGAATG
AGTCAATGCAAGACCAGGTTCCAAATACCATTGTGGCATCAGATCCATCATCTATGGGTAGAGAGATAGAACAGCATATTCCCCTCCGAGATCGGAGCAAGCAGGCAGTATTTTCTGGCACAGAGAAAAATTTGTCCACATCAACTGATAAAGCAGTCACTCTTCCTGCAATTGAAATTAAAGAAAAACCATCAGATGCT
TCTGTTTCAGAGGTTGTTGACACTGTTCATGATCTTGAGAGAATAAGGGAAGAATCTGCAGCCATCAAAGCACAGACAGCTTTCAGGGGCTATCTGGCTAGGCGAGCATTTCGAGCCCTTAGAGGCCTTATAAGACTTCAAGCCCTTGTCCGTGGGCACATGGTTAGGAGACAGGCTGCGGGAAGTTTACGCTGTTTACA
AGCAATTATCAGATTGCAAGCTTTAGTCCGTGGTCGCCGAGTTAGAATGTCGGAACAAGGATTGGCTGTACAGGAGACGCTTGAACTTAGGCGCAGACAAAATCCATCAAGAGTAAATGAATTGGAGAGAAAAAGTTCCTCGATCTTTGTGGTCAATGGTGCTTCCCGATCCGAGAAGCTGTTAGCAAATGCATTTGCTC
GTCAGATTCTAGAGTCTGCACCCATGACCAAGTCTATAGTTATACGAATTCATTGTGGTCCTGGTGATTCCAATTCGGGATGGGTCTGGTTGGAACGTTGGATGTCTGCTCAACCTTGGAGTTCATCTGGGCAGACTAGTAATAACTCAAATCTGAGGTCTCAGAAGACAACTGAGAATGTACCTTCAACTGAGGCTGAA
GTAGGAAGGCCGAAGCGCAGTGTGAGAAGGGTACCAAATTCAACGCAGGAGCATATTTCAAATCAGTTTGATATGGAATCAGAGAAGCCAAAGCGTGGCTTGAGAAAGACGTTAAGATCAGCAGTGGATTCTGTTTCTGATCAACCTGATGTTGATGCTGAGAGACCTAAACGGACTTTTAGAAGAGGGTTAAACTCAGC
ACAGGATTCTGTTTCAGATCAACCTGAGGTTGAAGCTGAGAAGGTTAAGCGTAACTTGAGAAAGGTATCACATCCGATGGCGGAGTCTGTCTCAGATCATCCGGAGGTAGAAATGGAGAAGGTTAAACGCAGCTTGAGAAAAATATCAGCTTCAGGAGTGGATTC