sp|Q9M651|RAGP2_ARATH ----> RAN GTPase-activating protein 2
Intron 1 GTATTACTAT ... ATTATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.62 | 6 | 4 | 13 |
| A2 | 57.89 | 4 | 6 | 5 |
| A3 | 38.46 | 4 | 0 | 5 |
| A4 | 72.73 | 1.5 | 5 | 2 |
| A5 | 71.43 | 1 | 2 | 3 |
| A6 | 20.98 | 24.5 | 8 | 5 |
| A7 | 22.23 | 22.8 | 4 | 9 |
| A8 | 29.75 | 19 | 3 | 13 |
| A9 | 7.79 | 17.8 | 0 | 3 |
| A10 | 27.46 | 16 | 5 | 7 |
>TRINITY_DN46150_c0_g1_i3 from sample A10 / Example spliced isoformCCCGATACTGTGCCGTCATTACACACAGGGTAAACCCGATACATTGCCGCTATTACGCACAGTGTAAACCCAATATCGTGCCGCCAGTGCATTGAACGTTGTTATCTCTGTGGAGGTTGCTAGAGCTATCCGAGAACTTCTGCCCTCTGTGGAGAGGCTTAGGGTTCGACATTTCCATGATAATAGGACAACGGATGATG
GAACTGAGGTCCTTTCAGCGGAGCGTACACCTCGTCATATATTTTATGGCAAGGCCGCATAAGGGTTTGAAAGATGGATGAGTATACCCCTGGCTTGGCATATAAACGTAAATTGAATGAAAACAACTTGGCGAAGGTGTGGCTCGACAAGTTGCCATTACTTTTCTTGGCGTTACATACCTATTCGTCATAACAGTGGA
GGAGATCTGGGCTTCATCTCATTTATCTGATGTTTCTCTCATAGACGAGCAAGACGAGCAACAAACTACAACTCGAACAGTTCATTTATGTTGAAAAAATAGTGTCTGGAAACCCTGTTCCTTATATCCGAGGGTTTCGGCCTATTGATTCTAGGTTGCCCAGTCCTCAGCAGTCTTGATGATTTGGTCAGTATGCATCA
ACACGAGGAGCAAAATAAAATGTGGTTTACAAGGGTTTCAACCCTATTTCTGGTCAAAATCTTGGGCCTAAATATTCTCACCGCCGCGGTTCCTGGGACCCGAACACAAGACTTGAACTAGCAGACTTGGCTGGACCAAGGGCTGATTCTACCCTACCGCAGAGAAGATCGCCTTTGAGTAAGCAAGGTCCCTCAAGCGA
ATGTGGCTCTAAGCTAAGGATTGGACATAGTGGGGTTGTTTCGATTGCAAGAATTGAGGCAGTTACCCATCTACAGGATTTTTCCAACAAATTCAACTCCTGCGGCAGTTACCCATCTACAGGATTTTTCCTACAAATTCAACTCCTGCGAGTAATTGCTGGAATTTCTTTTGAAATGACGGACACATGTGGCACTTACT
CAATCCTGGACGGGTGAGGAACCATATTTTTCTTGTAATGCTTATTTTTTTTTCCAGATATCATGGGATACAAAGGATCCTTTATACCAGGAGAAAATAATTTTTGCACAGAGAGCAAAACTGTCCGTGCAAACATTTTATTGTAAGGAAAATGGCTCACCTGACGTCAGGAAGATATACATTTGAAAAGAAAAGGAAGC
TGTCAAGCTGTGGTGAATTTTAAAAAATATATTGGTCCAAAATCCCCAAACATGTAGCTGCAACAACAGCTTGTCCTGCATTATGTTTTCTTGGTATTTTGAAAGGACAGCCTGCCATAAGGCCTGGTTGGAGTTCCATGATAGAGCAGAAGATAATACGACCCTCTGTAATGAGTGATTTAATCATTTGCAGTTTACTT
GCAAGGGAGGGCCATAAATTTCTCCAGATTTTGAGCTTTAAAAATCTTTTTCTGCATTTAATTCCAATCTCTGAGTCTTGAATCTCTTGGAGGTAACTCGGGAAAACTCCACATTTTGGAGCCTCAAAAGTATGTTAAATCTTTTGATGCATCTTGTTTGATCCATTTAGGAGGAAAGTGCATGATTTTTCTTTGATCTA
TTCCCTTCTAGAGGCCATAACATATGTATTTAGAATCTTGTGAACCTGTTTTATTCATGTGATTCTTGATCTCCCCATTATCATTGGCTGCAAATTCGAAATGATTTACACTTTTTGTTAGAATTAATTCTAGCTGCG
>TRINITY_DN46150_c0_g1_i12 from sample A10 / Example unspliced isoform:TAATTATGAATCTCATTTATGTGGTAAGTGAAACATAAAGAGCTTAATTATGAATCTTGTTTATGTGACAATTGAAACAAATACTTTTTCCTCGCAGTATATTGGTCCAAAATCCCCAAACATGTAGCTGCAACAACAGCTTGTCCTGCATTATGTTTTCTTGGTATTTTGAAAGGACAGCCTGCCATAAGgtattacta
tttctgcatagcttccaaaacaattttgtctcaatggccttgttcaggctgtacagcttttgtactcactcttgtggtttgtgcaagcaggatgtactttagttggacactgttgattttttttttctcctgtggttcctttattgagaggatctcatcatttttttcattattacagGCCTGGTTGGAGTTCCATGATA
GAGCAGAAGATAATACGACCCTCTGTAATGAGTGATTTAATCATTTGCAGTTTACTTGCAAGGGAGGGCCATAAATTTCTCCAGATTTTGAGCTTTAAAAATCTTTTTCTGCATTTAATTCCAATCTCTGAGTCTTGAATCTCTTGGAGAGGTAACTCGGGAAAACTCCACATTTTGGAGCCTCAAAAGTATGTTAAATC
TTTTGATGCATCTTGTTTGATCCATTTAGGAGGAAAGTGCATGATTTTTCTTTGATCTATTCCCTTCTAGAGGCCATAACATATGTATTTAGAATCTTGTGAACCTGTTTTATTCATGTGATTCTTGATCTCCCCATTATCATTGGCTGCAAATTCGAAATGATTTACACTTTTTGTTAGAATTAATTCTAGCTGCG
Intron 2 GTAGGTGAAG ... TCATCGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.64 | 10 | 21 | 4.7 |
| A2 | 81.9 | 1.7 | 5 | 6.3 |
| A3 | 59.29 | 3 | 3 | 4 |
| A4 | 80.95 | 1.3 | 8 | 2 |
| A5 | 90.43 | 0.7 | 7 | 5.3 |
| A6 | 64.46 | 12.3 | 22 | 19.7 |
| A7 | 74.22 | 13 | 45 | 27.3 |
| A8 | 75.31 | 9.7 | 43 | 15.7 |
| A9 | 59.99 | 19.7 | 41 | 17.3 |
| A10 | 68.58 | 14.3 | 49 | 13.3 |
>TRINITY_DN43926_c0_g1_i4 from sample A6 / Example spliced isoformGCACCCGATACTGTGCCGTCATTACACACAGGGTAAACCCGATACATTGCCGCTATTACGCACAGTGTAAACCCAATATCGTGCCGCCAGTGCATTGAACGTTGTTATCTCTGTGGAGGTTGCTAGAGCTATCCGAGAACTTCTGCCCTCTGTGGAGAGGCTTAGGGTTCGACATTTCCATGATAATAGGACAACGGATG
ATGGAACTGAGGTCCTTTCAGCGGAGCGTACACCTCGTCATATATTTTATGGCAAGGCCGCATAAGGGTTTGAAAGATGGATGAGTATACCCCTGGCTTGGCATATAAACGTAAATTGAATGAAAACAACTTGGCGAAGGTGTGGCTCGACAAGTTGCCATTACTTTTCTTGGCATTACATACCTATTTGTCATAACAGT
GGAGGAGATCTGGGCTTCATCTCATTTATCTGATGTTTCTCTCATAGACGAGCAACAAACTACAACTCGAACAGTTCATTTATGTTGAAAAAATAGTGTCTGGAAACCCTGTTCCTTATATCCGAGGGTTTCGGCCTATTGATTCCAGGTTACCCAGTCCTCAGCAGTCTTGATGATTTGGTCAGTATGCATCAACACGA
GGAGCAAAATAAAATGTGGTTTACAAGGGTTTCAACCCTATTTCTGGTCAAAATCTTGGGCCTAAATATTCTCACCGCCGCGGTTCCTGGGACCCGAACACAAGACTTGAACTAGCAGACTTGGCTGGACCAAGGGCTGATTCTACCCTACCGCAGAGAAGATCGCCTTTGAGTAAGCAAGGTCCCTCAAGCGAATGTGG
CTCTAAGCTAAGGATTGGACATAGTGGGGTTGTTTCGATTGCAAGAATTGAGGCAGTTACCCATCTACAGGATTTTTCCAACAAATTCAACTCCTGCGGCAGTTACCCATCTACAGGATTTTTCCTACAAATTCAACTCCTGCGAGTAATTGCTGGAATTTCTTTTGAAATGACGGACACATGTGGCACTTACTCAATCC
TGGACGGGTGAGGAACCATATTTTTCTTATATCATGGGATACAAAGGATCCTTTATACCAGGAGAAAATAATTTTTGCACAGAGAGCAAAACTGTCCGTGCAAACATTTTATTGTAAGGAAAATGGCTCACCTGACGTCAGGAAGATATACATTTGAAAAGAAAAGGAAGCTGTCAAGCTGTGGTGAATTTTAAAAAATA
TATTGGTCCAAAATCCCCAAACATGTAGCTGCAACAACAGCTTGTCCTGCATTATGTTTTCTTGGTATTTTGAAAGGACAGCCTGCCATAAGGTATTACTATTTCTGCATAGCTTCCAAAACAATTTTGTCTCAATGGCCTTGTTCAGGCTGTACAGCTTTTGTACTCACTCTTGTGGTTTGTGCAAGCAGGATGTACTT
TAGTTGGACACTGTTGATTTTTTTTTTCTCCTGT
>TRINITY_DN43926_c0_g1_i3 from sample A6 / Example unspliced isoform:GCACCCGATACTGTGCCGTCATTACACACAGGGTAAACCCGATACATTGCCGCTATTACGCACAGTGTAAACCCAATATCGTGCCGCCAGTGCATTGAACGTTGTTATCTCTGTGGAGGTTGCTAGAGCTATCCGAGAACTTCTGCCCTCTGTGGAGAGGCTTAGGGTTCGACATTTCCATGATAATAGGACAACGGATG
ATGGAACTGAGGTCCTTTCAGCGGAGCGTACACCTCGTCATATATTTTATGGCAAGGCCGCATAAGGGTTTGAAAGATGGATGAGTATACCCCTGGCTTGGCATATAAACGTAAATTGAATGAAAACAACTTGGCGAAGGTGTGGCTCGACAAGTTGCCATTACTTTTCTTGGCATTACATACCTATTTGTCATAACAGT
GGAGGAGATCTGGGCTTCATCTCATTTATCTGATGTTTCTCTCATAGACGAGCAACAAACTACAACTCGAACAGTTCATTTATGTTGAAAAAATAGTGTCTGGAAACCCTGTTCCTTATATCCGAGGGTTTCGGCCTATTGATTCCAGGTTACCCAGTCCTCAGCAGTCTTGATGATTTGGTCAGTATGCATCAACACGA
GGAGCAAAATAAAATGTGGTTTACAAGGGTTTCAACCCTATTTCTGGTCAAAATCTTGGGCCTAAATATTCTCACCGCCGCGGTTCCTGGGACCCGAACACAAGACTTGAACTAGCAGACTTGGCTGGACCAAGGGCTGATTCTACCCTACCGCAGAGAAGATCGCCTTTGAGTAAGCAAGGTCCCTCAAGCGAATGTGG
CTCTAAGCTAAGGATTGGACATAGTGGGGTTGTTTCGATTGCAAGAATTGAGGCAGTTACCCATCTACAGGATTTTTCCAACAAATTCAACTCCTGCGGCAGTTACCCATCTACAGGATTTTTCCTACAAATTCAACTCCTGCGAGTAATTGCTGGAATTTCTTTTGAAATGACGGACACATGTGGCACTTACTCAATCC
TGGACGGGTGAGGAACCATATTTTTCTTATATCATGGGATACAAAGGATCCTTTATACCAGGAGAAAATAATTTTTGCACAGAGAGCAAAACTGTCCGTGCAAACATTTTATTGTAAGGAAAATGGCTCACCTGACGTCAGGAAGATATACATTTGAAAAGAAAAGGAAGCTGTCAAGCTGTGGTGAATTTTAAAAAAgt
aggtgaagaaaattatttattcactctacatttgtggctaatgactttctgttgtagccccaggaaaatgccatgaaactcgaactcgcgacactgatttgaacaacttaactgattgaagctgaaatcagaacattataaaatctccattacgtttgtgatccaaacttccaaagtccttcccaagattctcatggtgg
ggagaatatgtcatttcagtcgacccccatcctcagccccatgggatccccccattcaaattcatcccttgggcgccattccaaggagtcatcggtagTATATTGGTCCAAAATCCCCAAACATGTAGCTGCAACAACAGCTTGTCCTGCATTATGTTTTCTTGGTATTTTGAAAGGACAGCCTGCCATAAGGCCTGGTT
GGAGTTCCATGATAGAGCAGAAGATAATACGACCCTCTGTAATGAGTGATTTAATCATTTGCAGTTTACTTGCAAGGGAGGGCCATAAATTTCTCCAGATTTTGAGCTTTAAAAATCTTTTTCTGCATTTAATTCCAATCTCTGAGTCTTGAATCTCTTGGAGAGGTAACTCGGGAAAACTCCACATTTTGGAGCCTCAA
AAGTATGTTAAATCTTTTGATGCATCTTGTTTGATCCATTTAGGAGGAAAGTGCATGATTTTTCTTTGATCTATTCCCTTCTAGAGGCCATAACATATGTATTTAGAATCTTGTGAACCTGTTTTATTCATGTGATTCTTGATCTCCCCATTATCATTGGCTGCT
Intron 3 GTAATGCTTA ... TTTTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.39 | 17.9 | 11.8 | 12.6 |
| A2 | 49.64 | 4 | 4.9 | 2.9 |
| A3 | 42.7 | 9.8 | 6.9 | 7.8 |
| A4 | 43.31 | 4.8 | 2.9 | 4.8 |
| A5 | 45.68 | 9.8 | 5.8 | 11.6 |
| A6 | 41.24 | 37.3 | 20.5 | 32.9 |
| A7 | 40.46 | 54.2 | 32.5 | 41.8 |
| A8 | 41.35 | 22.6 | 15.8 | 16.4 |
| A9 | 44.09 | 40.3 | 28.7 | 35.9 |
| A10 | 44.25 | 41.4 | 33.1 | 33.9 |
>TRINITY_DN107094_c1_g2_i3 from sample A3 / Example spliced isoformCGTGCCGTCATTACACACAGGGTAAACCACCGCCATTACGCACAGTGTAAACCCAATATCGTGCCGCCAGTGCATTGAACGTTGTTATCTCTATGGAGGTTGCTAGAGCTATCCGAGAACTTCTGCCCTCTGTGGAGAGGCTTAGGGTTCGACATTTCCATGATAATAGGACAACGGATGATGGAACTGAGGTCCTTTCA
GCGGAGCGTACACCTCGTCATATATTTTATGGCAAGGCCGCATAAGGGTTTGAAAGATGGATGAGTATACCCCTGGCTTGGCATATAAACGTAAATTGAATGAAAACAACTTGGCGAAGGTGTGGCTCGACAAGTTGCCATTACTTTTCTTGGCATTACATACCTATTTGTCATAACAGTGGAGGAGATCTGGGCTTCAT
CTCATTTATCTGATGTTTCTCTCATAGACGAGCAACAAACTACAACTCGAACAGTTCATTTATGTTGAAAAAATAGTGTCTGGAAACCCTGTTCCTTATATCCGAGGGTTTCGGCCTATTGATTCCAGGTTACCCAGTCCTCAGCAGTCTTGATGATTTGGTCAGTATGCATCAACACGAGGAGCAAAATAAAATGTGGT
TTACAAGGGTTTCAACCCTATTTCTGGTCAAAATCTTGGGCCTAAATATTCTCACCGCCGCGGTTCCTGGGACCCGAACACAAGACTTGAACTAGCAGACTTGGCTGGACCAAGGGCTGATTCTACCCTACCGCAGAGAAGATCGCCTTTGAGTAAGCAAGGTCCCTCAAGCGAATGTGGCTCTAAGCTAAGGATTGGAC
ATAGTGGGGTTGTTTCGATTGCAAGAATTGAGGCAGTTACCCATCTACAGGATTTTTCCAACAAATTCAACTCCTGCGGCAGTTACCCATCTACAGCATTTTTCCAACAAATTCAACTCCTGCGGCAGCTACCCATCTACAGGATTTTTCCTACAAATTCAACTCCTGCGAGTAATTGCTGGAATTTCTTTTGAAATGAC
GGACACATGTGGCACTTACTCAATCCTGGACGGGTGAGGAACCATATTTTTCTTATATCATGGGATACAAAGGATCCTTTATACCAGGAGAAAATAATTTTTGCACAGAGAGCAAAACTGTCCGTGCAAACATTTTATTGTAAGGAAAATG
>TRINITY_DN107094_c1_g2_i2 from sample A3 / Example unspliced isoform:CGTGCCGTCATTACACACAGGGTAAACCACCGCCATTACGCACAGTGTAAACCCAATATCGTGCCGCCAGTGCATTGAACGTTGTTATCTCTATGGAGGTTGCTAGAGCTATCCGAGAACTTCTGCCCTCTGTGGAGAGGCTTAGGGTTCGACATTTCCATGATAATAGGACAACGGATGATGGAACTGAGGTCCTTTCA
GCGGAGCGTACACCTCGTCATATATTTTATGGCAAGGCCGCATAAGGGTTTGAAAGATGGATGAGTATACCCCTGGCTTGGCATATAAACGTAAATTGAATGAAAACAACTTGGCGAAGGTGTGGCTCGACAAGTTGCCATTACTTTTCTTGGCATTACATACCTATTTGTCATAACAGTGGAGGAGATCTGGGCTTCAT
CTCATTTATCTGATGTTTCTCTCATAGACGAGCAACAAACTACAACTCGAACAGTTCATTTATGTTGAAAAAATAGTGTCTGGAAACCCTGTTCCTTATATCCGAGGGTTTCGGCCTATTGATTCCAGGTTACCCAGTCCTCAGCAGTCTTGATGATTTGGTCAGTATGCATCAACACGAGGAGCAAAATAAAATGTGGT
TTACAAGGGTTTCAACCCTATTTCTGGTCAAAATCTTGGGCCTAAATATTCTCACCGCCGCGGTTCCTGGGACCCGAACACAAGACTTGAACTAGCAGACTTGGCTGGACCAAGGGCTGATTCTACCCTACCGCAGAGAAGATCGCCTTTGAGTAAGCAAGGTCCCTCAAGCGAATGTGGCTCTAAGCTAAGGATTGGAC
ATAGTGGGGTTGTTTCGATTGCAAGAATTGAGGCAGTTACCCATCTACAGGATTTTTCCAACAAATTCAACTCCTGCGGCAGTTACCCATCTACAGCATTTTTCCAACAAATTCAACTCCTGCGGCAGCTACCCATCTACAGGATTTTTCCTACAAATTCAACTCCTGCGAGTAATTGCTGGAATTTCTTTTGAAATGAC
GGACACATGTGGCACTTACTCAATCCTGGACGGGTGAGGAACCATATTTTTCTTgtaatgcttatttttttttccagATATCATGGGAT
Intron 4 GTGATCCTGA ... CATGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 6 | 16 | 8 |
| A2 | 51.72 | 7 | 12 | 3 |
| A3 | 48.84 | 11 | 8 | 13 |
| A4 | 70.37 | 4 | 5 | 14 |
| A5 | 71.43 | 2 | 4 | 6 |
| A6 | 34.33 | 22 | 15 | 8 |
| A7 | 25.93 | 30 | 7 | 14 |
| A8 | 24.73 | 35 | 3 | 20 |
| A9 | 22.77 | 39 | 9 | 14 |
| A10 | 40.38 | 31 | 26 | 16 |
>TRINITY_DN47896_c0_g2_i3 from sample A7 / Example spliced isoformCGTTGGCGTTCAGTGGTTTATTCTGTCGGAGATCATGCCCTTTGCGTCAGTGATATCCGCCGACCATGCCCTCGATGGAGTTGATTTCTTCGGAGATTGCACGGAGGAACATTGTTTGAGAGCTACCATTTGCAGCTGGCACCGCGCTCAGGGTTTTGGCAAAGGCCTCCGGCCCAGGTAATGCTTTTTTTCCAAGGTAT
CATTGGATACAAAAGGACCCTTTGTACCAGGAGAAAAGAATTTTTGCACAGAGAGTAAACTGTCCGTGCAAACATTTAATTTAAGGAAAATGGCTCACCTGACGCCAGGAAGATATACATTTGAAAAGAAAAGGAAGATGTCAAGCAAGAAACTATGCCGCAGGAAAATGCCATGAAACTGAAACTCGCGACACTGATTT
GAACAACTTGACTGATTGAAGCTGAAATTAGAACATTATAAAATCTCCATTACGTTTGTTCCCAAGATTCTCATGGTGGGGAGAATATGTCATTTCAGTCCACCCACATCCTCAGCCCCATTGGGTCCCCCCATTCAAATTCATCTCTTGGGTGCCATTCCATGGAGTCATCAATAGGTTACTAAGAGTGGGAGGCAGGA
GTGCCATCTCGTTTCCACTGTTGGTAAATTTTCCGTCATCTAGAATTTCTGGCAAGAAAAATACAGTGACCATGTATGTTACAAGAGACAGGAGGGACTAAAAAGTTTCTATTGCTACAAGATTGTTCCAAAAGTCAAATCCATCGTGGAGAGAAAATTCATGCATGACCAATTTGCTATTACAGATTCTCTAGAAGCTC
TAATTGTAGTTGCAACACCAAAGAAAGTGAGCTCTTTCAGCACAACATCTTAACAGTAACATCCATTTCACACTAATCATGGTTGAAGCTTTGAGTAAATAACTCAAGTAGTGAAATATAAACAGTTGTGATGGTCTGTGCATATGACATCTCCACACCTTATAGGAGTGGAGTAAAACTAAAATCTTTACAGATTTTAA
TTTGTTGTATAACTTAGAGTTTGGGCATTTGGTGCTTGAAAGCAATGCATGTTGCTTGTTGTAATCTGTGTAAAGTTATGATTTGATTTTGATTCCACATGCACCCTTTTGTTCAAGTGCATGACCATCTTTGATATTTTATATAAATATGGATAGTTTGTATAAATTCAGAACAAGAGTGTGACCATCATTGATATTTT
TTATAACTATTAAC
>TRINITY_DN47896_c0_g2_i4 from sample A7 / Example unspliced isoform:CGTTGGCGTTCAGTGGTTTATTCTGTCGGAGATCATGCCCTTTGCGTCAGTGATATCCGCCGACCATGCCCTCGATGGAGTTGATTTCTTCGGAGATTGCACGGAGGAACATTGTTTGAGAGCTACCATTTGCAGCTGGCACCGCGCTCAGGGTTTTGGCAAAGGCCTCCGGCCCAGgtgatcctgatctcctcgctacg
cacagtgacaagcccctcataccaaacaggaagatatacccacctggacactgatatatatatttttacatttttggtctgattctagacttcgtgtttcaacattcatgtgatttctatattgggtgattgaagcttggtttatacagcaccttctgtcatttgcataattcagggttttgttttttttgggtattggc
atcttccaagttgctcgccatgaacatatttctgatgaaagtggtgtatatactactaacattaatggcagcaagccaaggtgaaagctctgatgtcgatgcactatgagcattcaagaagggtcttggcagcccggatggacttgcagactggcataatcactcgtctgcctgcgagtggactggtgttagctgcaggg
gggcgctgtaacttctctctctcttgtacatatggaactgcaaggcctcatttctctagagctcgtacatatggaactgcaaggcctttgtttaaaccctaaacctctccacatagggaaaaagctctcggatggctctagcaacctccatagagataacaatgttcagtgttcatatgccaagccaggggtatgctcat
acatatttcaaacccttgtgttgccttgccataaaatatatgacgaggtgtacgctcccctgaaaggacctttgttgaaacaccaagcctggatctcaaatctgcaaaaagacttcaaactagtcaacggattggatgttgttgacattgctacattttgtctcttaaatattcatttgtccgtagttgaggcttttgtt
ttcttctgagaacaagcagtaggctatttcgtgtgaattggttgcttgtaatggctccataagagtgattaagaaatatttgtcaaacacaaaaccacagaatagggaatggtggctcgcctggttggtgaaagtgtggattgttggttcaggtctctcctctgataagcttatgcttgtgaaaaataggtgaaagtccc
cggaaactttggcagaatagttatctcaaccaatggcatgttagtagaagggtgacttggttgtccaatgaagatataaataaatagcacagtttgtgttgacctggaagcattcaataaaaagaaggcagagcattatcacagttaacctgggaagtgtttttaggaacgaaatgacctttttcatcagtgggaaagaa
agtttttctttaaatggttctaacagatgtttagaaattgagacattgcccaaactgaatgttatttctatgtatattaaacagaaaaaatgcaagcgtaacagtgtgtttcttggaaaatgttgtgacatatatcggtgccattaaaaactgccacaactaactatatctgaacaaaagcacctctgctacagactgga
aaagcactaagtatgaatgtaatgaaaaaacaaacatattcacaccatcaattaaacatagtgattaataactagagaaaaaccctgagtgtggaaaaattccgggagatacattaatgaagagaaactaatttgaagacagtacttgggcactgatacttgaaacaagaattatatattatgttaggtctacatttcgc
tgtgataacaaaattcttctagcctgtgcgtccttcttaatgtagcctcctctttcctcctgctgttgtctttcctcaaaattgttcttttccaactgtttttggtgagactactgcaaacatagcatgaatacccaagcggctttgttgtctgctttttaataattattttattttgtttttcaaatactggacgggta
aggaaccatattttcttgtaagtgcagtgtcactattttttattagttgtattagcttccttgtgtcattaagttatttgttgtattagcttccatgttttatattttcataaagaccataatattatggtattggggcatgtttcagGTAATGCTTTTTTTCCAAGGTATCATTGGATACAAAAGGACCCTTTGTACCA
GGAGAAAAGAATTTTTGCACAGAGAGTAAACTGTCCGTGCAAACATTTAATTTAAGGAAAATGGCTCACCTGACGCCAGGAAGATATACATTTGAAAAGAAAAGGAAGATGTCAAGCAAGAAACTATGCCGCAGGAAAATGCCATGAAACTGAAACTCGCGACACTGATTTGAACAACTTGACTGATTGAAGCTGAAATT
AGAACATTATAAAATCTCCATTACGTTTGTTCCCAAGATTCTCATGGTGGGGAGAATATGTCATTTCAGTCCACCCACATCCTCAGCCCCATTGGGTCCCCCCATTCAAATTCATCTCTTGGGTGCCATTCCATGGAGTCATCAATAGGTTACTAAGAGTGGGAGGCAGGAGTGCCATCTCGTTTCCACTGTTGGTAAAT
TTTCCGTCATCTAGAATTTCTGGCAAGAAAAATACAGTGACCATGTATGTTACAAGAGACAGGAGGGACTAAAAAGTTTCTATTGCTACAAGATTGTTCCAAAAGTCAAATCCATCGTGGAGAGAAAATTCATGCATGACCAATTTGCTATTACAGATTCTCTAGAAGCTCTAATTGTAGTTGCAACACCAAAGAAAGTG
AGCTCTTTCAGCACAACATCTTAACAGTAACATCCATTTCACACTAATCATGGTTGAAGCTTTGAGTAAATAACTCAAGTAGTGAAATATAAACAGTTGTGATGGTCTGTGCATATGACATCTCCACACCTTATAGGAGTGGAGTAAAACTAAAATCTTTACAGATTTTAATTTGTTGTATAACTTAGAGTTTGGGCATT
TGGTGCTTGAAAGCAATGCATGTTGCTTGTTGTAATCTGTGTAAAGTTATGATTTGATTTTGATTCCACATGCACCCTTTTGTTCAAGTGCATGACCATCTTTGATATTTTATATAAATATGGATAGTTTGTATAAATTCAGAACAAGAGTGTGACCATCATTGATATTTTTTATAACTATTAAC
Intron 5 GTGAATTTTA ... TCTGTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.27 | 9 | 17 | 14 |
| A2 | 41.94 | 9 | 6 | 7 |
| A3 | 47.37 | 5 | 3 | 6 |
| A4 | 77.78 | 2 | 7 | 7 |
| A5 | 88.89 | 1 | 6 | 10 |
| A6 | 48.68 | 22.7 | 18 | 25 |
| A7 | 56.64 | 31 | 33 | 48 |
| A8 | 53.25 | 36 | 36 | 46 |
| A9 | 61.54 | 25 | 36 | 44 |
| A10 | 65.61 | 27 | 44 | 59 |
>TRINITY_DN47896_c0_g2_i3 from sample A7 / Example spliced isoformCGTTGGCGTTCAGTGGTTTATTCTGTCGGAGATCATGCCCTTTGCGTCAGTGATATCCGCCGACCATGCCCTCGATGGAGTTGATTTCTTCGGAGATTGCACGGAGGAACATTGTTTGAGAGCTACCATTTGCAGCTGGCACCGCGCTCAGGGTTTTGGCAAAGGCCTCCGGCCCAGGTAATGCTTTTTTTCCAAGGTAT
CATTGGATACAAAAGGACCCTTTGTACCAGGAGAAAAGAATTTTTGCACAGAGAGTAAACTGTCCGTGCAAACATTTAATTTAAGGAAAATGGCTCACCTGACGCCAGGAAGATATACATTTGAAAAGAAAAGGAAGATGTCAAGCAAGAAACTATGCCGCAGGAAAATGCCATGAAACTGAAACTCGCGACACTGATTT
GAACAACTTGACTGATTGAAGCTGAAATTAGAACATTATAAAATCTCCATTACGTTTGTTCCCAAGATTCTCATGGTGGGGAGAATATGTCATTTCAGTCCACCCACATCCTCAGCCCCATTGGGTCCCCCCATTCAAATTCATCTCTTGGGTGCCATTCCATGGAGTCATCAATAGGTTACTAAGAGTGGGAGGCAGGA
GTGCCATCTCGTTTCCACTGTTGGTAAATTTTCCGTCATCTAGAATTTCTGGCAAGAAAAATACAGTGACCATGTATGTTACAAGAGACAGGAGGGACTAAAAAGTTTCTATTGCTACAAGATTGTTCCAAAAGTCAAATCCATCGTGGAGAGAAAATTCATGCATGACCAATTTGCTATTACAGATTCTCTAGAAGCTC
TAATTGTAGTTGCAACACCAAAGAAAGTGAGCTCTTTCAGCACAACATCTTAACAGTAACATCCATTTCACACTAATCATGGTTGAAGCTTTGAGTAAATAACTCAAGTAGTGAAATATAAACAGTTGTGATGGTCTGTGCATATGACATCTCCACACCTTATAGGAGTGGAGTAAAACTAAAATCTTTACAGATTTTAA
TTTGTTGTATAACTTAGAGTTTGGGCATTTGGTGCTTGAAAGCAATGCATGTTGCTTGTTGTAATCTGTGTAAAGTTATGATTTGATTTTGATTCCACATGCACCCTTTTGTTCAAGTGCATGACCATCTTTGATATTTTATATAAATATGGATAGTTTGTATAAATTCAGAACAAGAGTGTGACCATCATTGATATTTT
TTATAACTATTAAC
>TRINITY_DN47896_c0_g2_i10 from sample A7 / Example unspliced isoform:AGGTATCATTGGATACAAAAGGACCCTTTGTACCAGGAGAAAAGAATTTTTGCACAGAGAGTAAACTGTCCGTGCAAACATTTAATTTAAGGAAAATGGCTCACCTGACGCCAGGAAGATATACATTTGAAAAGAAAAGGAAGATGTCAAGCAAGAAACTATGgtgaattttaaaaaagtaggtgaagaaaattatttat
tcacactacatttgtggctgatgactttctgttgtagCCGCAGGAAAATGCCATGAAACTGAAACTCGCGACACTGATTTGAACAACTTGACTGATTGAAGCTGAAATTAGAACATTATAAAATCTCCATTACGTTTGTTCCCAAGATTCTCATGGTGGGGAGAATATGTCATTTCAGTCCACCCACATCCTCAGCCCCA
TTGGGTCCCCCCATTCAAATTCATCTCTTGGGTGCCATTCCATGGAGTCATCAATAGGTTACTAAGAGTGGGAGGCAGGAGTGCCATCTCGTTTCCACTGTTGGTAAATTTTCCGTCATCTAGAATTTCTGGCAAGAAAAATACAGTGACCATGTATGTTACAAGAGACAGGAGGGACTAAAAAGTTTCTATTGCTACAA
GATTGTTCCAAAAGTCAAATCCATCGTGGAGAGAAAATTCATGCATGACCAATTTGCTATTACAGATTCTCTAGAAGCTCTAATTGTAGTTGCAACACCAAAGAAAGTGAGCTCTTTCAGCACAACATCTTAACAGTAACATCCATTTCACACTAATCATGGTTGAAGCTTTGAGTAAATAACTCAAGTAGTGAAATATA
AACAGTTGTGATGGTCTGTGCATATGACATCTCCACACCTTATAGGAGTGGAGTAAAACTAAAATCTTTACAGATTTTAATTTGTTGTATAACTTAGAGTTTGGGCATTTGGTGCTTGAAAGCAATGCATGTTGCTTGTTGTAATCTGTGTAAAGTTATGATTTGATTTTGATTCCACATGCACCCTTTTGTTCAAGTGC
ATGACCATCTTTGATATTTTATATAAATATGGATAGTTTGTATAAATTCAGAACAAGAGTGTGACCATCATTGATATTTTTTATAACTATTAAC
Intron 6 GTAGGTGAAG ... TCATCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.38 | 4 | 12 | 17 |
| A2 | 75 | 1 | 2 | 4 |
| A3 | 36.84 | 6 | 0 | 7 |
| A4 | 71.43 | 2 | 4 | 6 |
| A5 | 77.78 | 2 | 4 | 10 |
| A6 | 64.29 | 10 | 16 | 20 |
| A7 | 80.82 | 7 | 30 | 29 |
| A8 | 71.83 | 10 | 18 | 33 |
| A9 | 78.18 | 6 | 21 | 22 |
| A10 | 75.44 | 7 | 24 | 19 |
>TRINITY_DN43926_c0_g1_i6 from sample A6 / Example spliced isoformATATACATTTGAAAAGAAAAGGAAGATGTCAAGCAAGAAACTATGGTGAATTTTAAAAAAGTTACTAAGAGTGGGAGGCAGGAGTGCCATCTCGTTTCCACTGTTGGTAAATTTTCCGTCATCTAGAATTTCTGGCAAGAAAAATACAGTGACCATGTATGTTACAAGAGACAGGAGGGACTAAAAAGTTTCTATTGCTA
CAAGATTGTTCCAAAAGTCAAATCCATCGTGGAGAGAAAATTCATGCATGACCAATTTGCTATTACAGATTCTCTAGAAGCTCTAATTGTAGTTGCAACACCAAAGAAAGTGAGCTCTTTCAGCACAACATCTTAACAGTAACATCCATTTCACACTAATCATGGTTGAAGCTTTGAGTAAATAACTCAAGTAGTGAAAT
ATAAACAGTTGTGATGGTCTGTGCATATGACATCTCCACACCTTATAGGAGTGGAGTAAAACTAAAATCTTTACAGATTTTAATTTGTTGTATAACTTAGAGTTTGGGCATTTGGTGCTTGAAAGCAATGCATGTTGCTTGTTGTAATCTGTGTAAAGTTATGATTTGATTTTGATTCCACATGCACCCTTTTGTTCAAG
TGCATGACCATCGTTGATATTTTATATAAAT
>TRINITY_DN43926_c0_g1_i13 from sample A6 / Example unspliced isoform:CTGTCAAGCTGTGGTGAATTTTAAAAAAgtaggtgaagaaaattatttattcacactacatttgtggctgatgactttctgttgtagccgcaggaaaatgccaggaaactgaaactcgcgacactgatttgaacaacttaactgattgaagctgaaatcagaacattataaaatctccattacgtttgttcccaagattc
tcatggtggggagaatatgtcatttcagtccacccacatcctcagccccattgggtccccccattcaaattcatctcttgggtgccattccatggagtcatcaatagGTTACTAAGAGTGGGAGGCAGGAGTGCCATCTCGTTTCCACTGTTGGTAAATTTTCCGTCATCTAGAATTTCTGGCAAGAAAAATACAGTGAC
CATGTATGTTACAAGAGACAGGAGGGACTAAAAAGTTTCTATTGCTACAAGATTGTTCCAAAAGTCAAATCCATCGTGGAGAGAAAATTCATGCATGACCAATTTGCTATTACAGATTCTCTAGAAGCTCTAATTGTAGTTGCAACACCAAAGAAAGTGAGCTCTTTCAGCACAACATCTTAACAGTAACATCCATTTCA
CACTAATCATGGTTGAAGCTTTGAGTAAATAACTCAAGTAGTGAAATATAAACAGTTGTGATGGTCTGTGCATATGACATCTCCACACCTTATAGGAGTGGAGTAAAACTAAAATCTTTACAGATTTTAATTTGTTGTATAACTTAGAGTTTGGGCATTTGGTGCTTGAAAGCAATGCATGTTGCTTGTTGTAATCTGTG
TAAAGTTATGATTTGATTTTGATTCCACATGCACCCTTTTGTTCAAGTGCATGACCATCGTTGATATTTTATATAAAT