sp|Q8GY84|RH10_ARATH ----> DEAD-box ATP-dependent RNA helicase 10
Intron 1 GTAACTCCTT ... AAATTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.47 | 52 | 53 | 41 |
| A2 | 43.22 | 33.5 | 26 | 25 |
| A3 | 60.49 | 32 | 47 | 51 |
| A4 | 49.6 | 47.5 | 46 | 47.5 |
| A5 | 56.63 | 18 | 25 | 22 |
| A6 | 46.58 | 39 | 37 | 31 |
| A7 | 58.68 | 69 | 110 | 86 |
| A8 | 50 | 35 | 42 | 28 |
| A9 | 53.33 | 52.5 | 67 | 53 |
| A10 | 58.25 | 62 | 109 | 64 |
>TRINITY_DN131085_c1_g1_i11 from sample A1 / Example spliced isoformAGGAAAGTAAGACACTGAAGCTCGACTCGAGGCAAAGTATTAGTTTAACATAGATAAATAGGTATTGAAGGTGTTTTTTTTTTCAACCGAAGGTATTGAAGGTGTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGT
AACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAACTTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTGCGCGCGTGTCACAGCTTACCAATGCTGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTCTGAACAGCTAAAAGGA
AATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACAGCTTTGCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAGAAACCATCTGCAATTCAAGTCCAATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCTGGGAAAACGGCAGCAT
TTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGGGAACTGGCAATTCAGATTGCAGAGCAGTTTGAAGCACTGGGATCCGGCATTGGTGTAAAGTGTGTCGTGGTTGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTTGGCCAAAAGGCCTCAT
ATCTTGGTGGGAACTCCAGGACGTCTTTTAGATCATTTATCAAATACAAAGGGCTTCAATCTACGGACATTGAAGTATTTGGTGTTAGATGAAGCAGACAGGCTGCTGAACATGGATTTTGAACAGGAAATTAATGAAATCCTTAAGGTTATTCCCAGGGAGAGGAATACATATTTATTCTCAGCAACAATGACAAATAA
GGTGGCTAAGCTTCAGAGAGCATGTCTGAAGAATCCTGCAAAGGTTGAGGTTTCTTCAAAGTACTCGACCGTGGATACATTGAAACAGCAATATCTTTTTGTTCCTGCAAAGCATAAGGATTGCTATCTTGTTTTTCTTTTAAATGAGATGTCTGGAAGTACTACAATGGTTTTCACTCGCACATGTGAATCTACAAGGC
GCCTTGCTTTGATTCTCCGAAATCTTGGACTCGAGGCCATTCCTATAAGTGGGCAAATGAGTCAGCCAAAACGGATAGGGGCTCTAAACAAGTTCAAGGCTGGAGAGCGTAACATCCTTATCTGCACTGATGTTGCTAGCAGAGGGCTAGATATTCCTTCTGTTGATATGGTTATCAACTATGATATACCTACAAACTCG
AAGGTTAGTACAAAATATTTATAGAGGTTTAAGTTGGAAAAATGTGGAATGATGCAAATGCAGATGAAACAAATCTTGGAAATGTTATTAACAAAAAATACGAACTATTTTTCTTGGTGATACATATAAACCCGGATTTGCAAATTCTAATGTTTCCAGTTTCCACTTTTGCAAACAACTCTGCCC
>TRINITY_DN131085_c1_g1_i5 from sample A1 / Example unspliced isoform:AGGAAAGTAAGACACTGAAGCTCGACTCGAGGCAAAGTATTAGTTTAACATAGATAAATAGGTATTGAAGGTGTTTTTTTTTTCAACCGAAGGTATTGAAGGTGTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGT
AACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAACTTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTGCGCGCGTGTCACAGCTTACCAATGCTGgtaactccttttcatagcaattttcttaaaggaggtagggacttttgaagtcgtaatcacagttcaaatt
cacagGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTCTGAACAGCTAAAAGGAAATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACAGCTTTGCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAGAAACCATCTGCAATTCAAGTCC
AATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCTGGGAAAACGGCAGCATTTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGGGAACTGGCAATTCAGATTGCAGAGCAGTTTGAAGCACTGGGATCCGGCATT
GGTGTAAAGTGTGTCGTGGTTGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTTGGCCAAAAGGCCTCATATCTTGGTGGGAACTCCAGGACGTCTTTTAGATCATTTATCAAATACAAAGGGCTTCAATCTACGGACATTGAAGTATTTGGTGTTAGATGAAGCAGACAGGCTGCTGAACATGGATTTTGAACA
GGAAATTAATGAAATCCTTAAGGTTATTCCCAGGGAGAGGAATACATATTTATTCTCAGCAACAATGACAAATAAGGTGGCTAAGCTTCAGAGAGCATGTCTGAAGAATCCTGCAAAGGTTGAGGTTTCTTCAAAGTACTCGACCGTGGATACATTGAAACAGCAATATCTTTTTGTTCCTGCAAAGCATAAGGATTGCT
ATCTTGTTTTTCTTTTAAATGAGATGTCTGGAAGTACTACAATGGTTTTCACTCGCACATGTGAATCTACAAGGCGCCTTGCTTTGATTCTCCGAAATCTTGGACTCGAGGCCATTCCTATAAGTGGGCAAATGAGTCAGCCAAAACGGATAGGGGCTCTAAACAAGTTCAAGGCTGGAGAGCGTAACATCCTTATCTGC
ACTGATGTTGCTAGCAGAGGGCTAGATATTCCTTCTGTTGATATGGTTATCAACTATGATATACCTACAAACTCGAAGGTTAGTACAAAATATTTATAGAGGTTTAAGTTGGAAAAATGTGGAATGATGCAAATGCAGATGAAACAAATCTTGGAAATGTTATTAACAAAAAATACGAACTATTTTTCTTGGTGATACAT
ATAAACCCGGATTTGCAAATTCTAATGTTTCCAGTTTCCACTTTTGCAAACAACTCTGCCC
Intron 2 GTTGACCCTT ... ATGTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.44 | 72 | 4 | 9 |
| A2 | 7.86 | 29.4 | 2 | 3 |
| A3 | 17.3 | 40.9 | 12 | 5 |
| A4 | 3.73 | 39 | 1 | 2 |
| A5 | 10.17 | 22.3 | 5 | 0 |
| A6 | 0.54 | 93.1 | 1 | 0 |
| A7 | 0 | 152 | 0 | 0 |
| A8 | 0.44 | 113.4 | 1 | 0 |
| A9 | 0 | 105.6 | 0 | 0 |
| A10 | 0.79 | 127.4 | 1 | 1 |
>TRINITY_DN120809_c0_g1_i5 from sample A3 / Example spliced isoformAGGTATTGAAGGTGTTTTTTTTTTCAACCGAAGGTATTGAAGGTGTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGTAACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAAC
TTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTGCGCGCGTGTCACAGCTTACCAATGCTGGTAACTCCTTTTCATAGCAATTTTCTTAAAGGAGGTAGGGACTTTTGAAGTCGTAATCACAGTTCAAATTCACAGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTC
TGAACAGCTAAAAGGAAATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACACCTTTTCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAGAAACCATCTGCAATTCAAGTCCAATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCT
GGGAAAACGGCAGCATTTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGGGAACTGGCAATTCAGATTGCAGAGCAGTTTGAAGCACTGGGATCCGGCATTGGTGTAAAGTGTGTCGTGGTTGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTT
GGCCAAAAGGCCTCATATCTTGGTGGGAACTCCAGGACGTCTTTTAGATCATTTATCAAATACAAAGGGCTTCAATCTACGGACATTGAAGTATTTGGTGTTAGATGAAGCAGACAGGCTACTGAACATGGATTTTGAACAGGAAATTAATGAAATCCTTAAGGTTATTCCCAGGGAGAGGAATACATATTTATTCTCGG
CAACAATGACAAATAAGGTGGCTAAGCTTCAGAGAGCATGTCTGAAGAATCCTGCAAAGGTTGAGGTTTCTTCAAAGTACTCGACCGTGGATACATTGAAACAGCAATATCTTTTTGTTCCTGCAAAGCATAAGGATTGCTATCTTGTGTTTCTTTTAAATGAGATGTCTGGAAGTACTACAATGGTTTTCACTCGCACA
TGTGAATCTACAAGGCGCCTTGCTTTGATTCTTCGAAATCTTGGACTCGAGGCCATTCCTATAAGTGGGCAAATGAGTCAGCCAAAACGGATAGGGGCTCTAAACAAGTTCAAGGCTGGAGAGCGTAACATCCTTATCTGCACTGATGTTGCTAGCAGAGGGCTAGATATTCCTTCTGTTGATATGGTTATCAACTATGA
TATACCTACAAACTCAAAGGATTATATTCATAGAGTGGGAAGAACAGCACGTGCCGGTCGGTCAGGTCTAGCAGTGTCTCTAGTTACCCAATATGACGTTGAGCTATACCAGCGTATAGAACAATTGATAGGTAAGAAACTCCCCGGATATCCGGCGGAGCAGGAAGAGGTTTTACAACTCTATGAACGAGTTAACGAGG
CCCAAAGAATTTCTGCCACGGTAAGATCCGTTTTATCATTTATATGTAACAATATTAAAAATCATAATGTTTCCACTATTAAATGCACGAATATTAGCATATCATGCGCTATATGAAGACTTGTATTTTTGTAAATATCATCCTCAT
>TRINITY_DN120809_c0_g1_i7 from sample A3 / Example unspliced isoform:CATTTATTAAAAATAAATTCTTCTTTTTGTATATCAAGTTTAACAATGTAAGAGATCTATCTACCATATTTAACTTGTTTAAGTGCTGCAGGTGGCTAAGCTTCAGAGAGCATGTCTGAAGAATCCTGCAAAGgttgacccttttcctttatttggaatggcatgaatatagttttgagttattaatagtcgagtctgtt
ttgttcaaatacataaaaaatataggagctttagtgtggtagttttaaaatcctctttgcaatgggtgaagttgagctaattgtttaagacaatgagaagacatgcatatctaaggtcgcctaatgtcatttatttgttaatcgtgctatgtcaagttatatgttccactttatctgttaaactgcaactatcattattt
tctttgatgtatgtgttgtcatctaatatttaacagcataaattccatgaggtgttttactcatcttttatttgatggatgtcttcagGTTGAGGTTTCTTCAAAGTACTCGACCGTGGATACATTGAAACAGCAATATCTTTTTGTTCCTGCAAAGCATAAGGTTCGCCTACTCTCCTTTTTGTATTTCAGATAGTGAT
CTACGCTGCCAATTTGCATGTTTTTGTGTATACTTTACCCTAATATTTCTCCTTATTTTCCTATTGTGCCTTCTGTTTGATGCTTCAGTTGACGAATTATTATCAAAGAATCTTAGGTTATGACCTCATTTTAAGCTGCACATTTCATGTACTTAAAATTTAATTGAAATTCTATACATATTACAAAGTAATTCAAGATT
TTGTGCATTGATTGAAGGAAAATCTGGGTGTTTCTTGTCATGAGTATCTATTATTTTTGACCTTGTATTTATTAAACAGGATTGCTATCTTGTGTTTCTTTTAAATGAGATGTCTGGAAGTACTACAATGGTTTTCACTCGCACATGTGAATCTACAAGGCGCCTTGCTTTGATTCTTCGAAATCTTGGACTCGAGGCCA
TTCCTATAAGTGGGCAAATGAGTCAGCCAAAACGGATAGGGGCTCTAAACAAGTTCAAGGCTGGAGAGCGTAACATCCTTATCTGCACTGATGTTGCTAGCAGAGGGCTAGATATTCCTTCTGTTGATATGGTTATCAACTATGATATACCTACAAACTCAAAGGATTATATTCATAGAGTGGGAAGAACAGCACGTGCC
GGTCGGTCAGGTCTAGCAGTGTCTCTAGTTACCCAATATGACGTTGAGCTATACCAGCGTATAGAACAATTGATAGGTAAGAAACTCCCCGGATATCCGGCGGAGCAGGAAGAGGTTTTACAACTCTATGAACGAGTTAACGAGGCCCAAAGAATTTCTGCCACG
Intron 3 GTTCGCCTAC ... TATTAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.86 | 117 | 18.5 | 29 |
| A2 | 17.74 | 51 | 8.5 | 11 |
| A3 | 28.13 | 69 | 12 | 27 |
| A4 | 15 | 51 | 12.5 | 9 |
| A5 | 17.65 | 28 | 3.5 | 6 |
| A6 | 18.75 | 117 | 8 | 27 |
| A7 | 13.46 | 225 | 21 | 35 |
| A8 | 13.24 | 118 | 12.5 | 18 |
| A9 | 21.11 | 142 | 11.5 | 38 |
| A10 | 11.03 | 129 | 13.5 | 16 |
>TRINITY_DN120809_c0_g1_i5 from sample A3 / Example spliced isoformAGGTATTGAAGGTGTTTTTTTTTTCAACCGAAGGTATTGAAGGTGTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGTAACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAAC
TTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTGCGCGCGTGTCACAGCTTACCAATGCTGGTAACTCCTTTTCATAGCAATTTTCTTAAAGGAGGTAGGGACTTTTGAAGTCGTAATCACAGTTCAAATTCACAGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTC
TGAACAGCTAAAAGGAAATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACACCTTTTCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAGAAACCATCTGCAATTCAAGTCCAATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCT
GGGAAAACGGCAGCATTTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGGGAACTGGCAATTCAGATTGCAGAGCAGTTTGAAGCACTGGGATCCGGCATTGGTGTAAAGTGTGTCGTGGTTGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTT
GGCCAAAAGGCCTCATATCTTGGTGGGAACTCCAGGACGTCTTTTAGATCATTTATCAAATACAAAGGGCTTCAATCTACGGACATTGAAGTATTTGGTGTTAGATGAAGCAGACAGGCTACTGAACATGGATTTTGAACAGGAAATTAATGAAATCCTTAAGGTTATTCCCAGGGAGAGGAATACATATTTATTCTCGG
CAACAATGACAAATAAGGTGGCTAAGCTTCAGAGAGCATGTCTGAAGAATCCTGCAAAGGTTGAGGTTTCTTCAAAGTACTCGACCGTGGATACATTGAAACAGCAATATCTTTTTGTTCCTGCAAAGCATAAGGATTGCTATCTTGTGTTTCTTTTAAATGAGATGTCTGGAAGTACTACAATGGTTTTCACTCGCACA
TGTGAATCTACAAGGCGCCTTGCTTTGATTCTTCGAAATCTTGGACTCGAGGCCATTCCTATAAGTGGGCAAATGAGTCAGCCAAAACGGATAGGGGCTCTAAACAAGTTCAAGGCTGGAGAGCGTAACATCCTTATCTGCACTGATGTTGCTAGCAGAGGGCTAGATATTCCTTCTGTTGATATGGTTATCAACTATGA
TATACCTACAAACTCAAAGGATTATATTCATAGAGTGGGAAGAACAGCACGTGCCGGTCGGTCAGGTCTAGCAGTGTCTCTAGTTACCCAATATGACGTTGAGCTATACCAGCGTATAGAACAATTGATAGGTAAGAAACTCCCCGGATATCCGGCGGAGCAGGAAGAGGTTTTACAACTCTATGAACGAGTTAACGAGG
CCCAAAGAATTTCTGCCACGGTAAGATCCGTTTTATCATTTATATGTAACAATATTAAAAATCATAATGTTTCCACTATTAAATGCACGAATATTAGCATATCATGCGCTATATGAAGACTTGTATTTTTGTAAATATCATCCTCAT
>TRINITY_DN120809_c0_g1_i3 from sample A3 / Example unspliced isoform:AGGTATTGAAGGTGTTTTTTTTTTCAACCGAAGGTATTGAAGGTGTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGTAACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAAC
TTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTGCGCGCGTGTCACAGCTTACCAATGCTGGTAACTCCTTTTCATAGCAATTTTCTTAAAGGAGGTAGGGACTTTTGAAGTCGTAATCACAGTTCAAATTCACAGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTC
TGAACAGCTAAAAGGAAATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACACCTTTTCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAGAAACCATCTGCAATTCAAGTCCAATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCT
GGGAAAACGGCAGCATTTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGGGAACTGGCAATTCAGATTGCAGAGCAGTTTGAAGCACTGGGATCCGGCATTGGTGTAAAGTGTGTCGTGGTTGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTT
GGCCAAAAGGCCTCATATCTTGGTGGGAACTCCAGGACGTCTTTTAGATCATTTATCAAATACAAAGGGCTTCAATCTACGGACATTGAAGTATTTGGTGTTAGATGAAGCAGACAGGCTACTGAACATGGATTTTGAACAGGAAATTAATGAAATCCTTAAGGTTATTCCCAGGGAGAGGAATACATATTTATTCTCGG
CAACAATGACAAATAAGGTGGCTAAGCTTCAGAGAGCATGTCTGAAGAATCCTGCAAAGGTTGAGGTTTCTTCAAAGTACTCGACCGTGGATACATTGAAACAGCAATATCTTTTTGTTCCTGCAAAGCATAAGgttcgcctactctcctttttgtatttcagatagtgatctacgctgccaatttgcatgtttttgtgt
atactttaccctaatatttctccttattttcctattgtgccttctgtttgatgcttcagttgacgaattattatcaaagaatcttaggttatgacctcattttaagctgcacatttcatgtacttaaaatttaattgaaattctatacatattacaaagtaattcaagattttgtgcattgattgaaggaaaatctgggt
gtttcttgtcatgagtatctattatttttgaccttgtatttattaaacagGATTGCTATCTTGTGTTTCTTTTAAATGAGATGTCTGGAAGTACTACAATGGTTTTCACTCGCACATGTGAATCTACAAGGCGCCTTGCTTTGATTCTTCGAAATCTTGGACTCGAGGCCATTCCTATAAGTGGGCAAATGAGTCAGCCA
AAACGGATAGGGGCTCTAAACAAGTTCAAGGCTGGAGAGCGTAACATCCTTATCTGCACTGATGTTGCTAGCAGAGGGCTAGATATTCCTTCTGTTGATATGGTTATCAACTATGATATACCTACAAACTCAAAGGATTATATTCATAGAGTGGGAAGAACAGCACGTGCCGGTCGGTCAGGTCTAGCAGTGTCTCTAGT
TACCCAATATGACGTTGAGCTATACCAGCGTATAGAACAATTGATAGGTAAGAAACTCCCCGGATATCCGGCGGAGCAGGAAGAGGTTTTACAACTCTATGAACGAGTTAACGAGGCCCAAAGAATTTCTGCCACG
Intron 4 GTAGTTGTTT ... GGCAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.39 | 72 | 21 | 28 |
| A2 | 20.5 | 64 | 16 | 17 |
| A3 | 20.21 | 77 | 13 | 26 |
| A4 | 31.15 | 63 | 19 | 38 |
| A5 | 24.81 | 50 | 18 | 15 |
| A6 | 29.68 | 109 | 24 | 68 |
| A7 | 34.66 | 115 | 23 | 99 |
| A8 | 28.46 | 88 | 19 | 51 |
| A9 | 27.04 | 112 | 14 | 69 |
| A10 | 27.6 | 122 | 14 | 79 |
>TRINITY_DN105988_c0_g1_i9 from sample A5 / Example spliced isoformGTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGTAACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAACTTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTG
CGCGCGTGTCACAGCTTACCAATGCTGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTCTGAACAGCTAAAAGGAAATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACAGCTTTGCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAG
AAACCATCTGCAATTCAAGTCCAATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCTGGGAAAACGGCAGCATTTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGATTGCAGAGCAGTTTGAAGCACTGGGATCT
GGCATTGGTGTAAAGTGTGTTGTGGTCGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTTGGCCAAAAGGCCTCATATCTTGGT
>TRINITY_DN105988_c0_g1_i11 from sample A5 / Example unspliced isoform:GTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGTAACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAACTTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTG
CGCGCGTGTCACAGCTTACCAATGCTGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTCTGAACAGCTAAAAGGAAATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACAGCTTTGCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAG
AAACCATCTGCAATTCAAGTCCAATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCTGGGAAAACGGCAGCATTTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGgtagttgttttaagtcatcggtcaagttcc
agggtttcgagcattcatcaccttgaattatatcttattctgttttacgtccttactttccagggaactggcaattcagATTGCAGAGCAGTTTGAAGCACTGGGATCCGGCATTGGTGTAAAGTGTGTCGTGGTTGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTTGGCCAAAAGGCCTCATATCTTGGTAA
TTTCCAATGCCTATTTTAACACTTGTTATTGATTTTGAGCAATAAAAATAATTTCCTTTAGAAACAACGAAAACATATTTAAATAATTTGCCAATGCTCTCATTTATGGGCAAGGATAGTTAGCAACATAACATGATTCTATTGTTATACAAGCCACATCTTTCCAAGTAAGATAAGTTGATAATGGTTGTCTAATTGAG
TTAAGGGACTTAGTAGGCTAGTTAAGCATCTATCTAAAATAGTGTTTCATTGCTTAGATAAATGCTTGAATCTTGCATGTACAAGAACGAAAACAAGGAAAACTAGATTACGAAAAAGGTTATATGGATTTTCAAGAGATTTTGTAAAGGGAGAAGTGTGAGTTGGGA
Intron 5 GTTTCTTCTT ... GTGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.62 | 59 | 14 | 13 |
| A2 | 11.39 | 70 | 6 | 12 |
| A3 | 15.61 | 100 | 25 | 12 |
| A4 | 14.73 | 55 | 10 | 9 |
| A5 | 21.37 | 46 | 12 | 13 |
| A6 | 15.23 | 128 | 31 | 15 |
| A7 | 11.9 | 211 | 42 | 15 |
| A8 | 11.8 | 71 | 15 | 4 |
| A9 | 12.64 | 159 | 40 | 6 |
| A10 | 13.25 | 180 | 41 | 14 |
>TRINITY_DN105988_c0_g1_i9 from sample A5 / Example spliced isoformGTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGTAACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAACTTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTG
CGCGCGTGTCACAGCTTACCAATGCTGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTCTGAACAGCTAAAAGGAAATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACAGCTTTGCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAG
AAACCATCTGCAATTCAAGTCCAATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCTGGGAAAACGGCAGCATTTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGATTGCAGAGCAGTTTGAAGCACTGGGATCT
GGCATTGGTGTAAAGTGTGTTGTGGTCGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTTGGCCAAAAGGCCTCATATCTTGGT
>TRINITY_DN105988_c0_g1_i10 from sample A5 / Example unspliced isoform:GTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGTAACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAACTTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTG
CGCGCGTGTCACAGCTTACCAATGCTGGTAACTCCTTTTCATAGCAATTTTCTTAAAGGAGGTAGGGACTTTTGAAGTCGTAATCACAGTTCAAATTCACAGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTCTGAACAGCTAAAAGGAAATTATGGCGGTCGTTGAAGAAGAAGAA
GAGGAGGTTCACAGCTTTGCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAGAAACCATCTGCAATTCAAGTCCAATCTCTTCCCCTCGCCCTGGAAGgtttcttctttttcaaaagcacttttatgttcgggtttaaggtttagcttgaggcagatatgtttgaagattgaatata
tcgatgggttttctgtcagggttcagggtttagcgtcaaacaatgtgttgcagtccataaatttcgaagactgaggttttgtattggttttctgttaaattagcctgcgattttcttattactttgttgtctgtgttttcagGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCTGGGAAAACGGCAGCATTTGCAAT
TCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGATTGCAGAGCAGTTTGAAGCACTGGGATCTGGCATTGGTGTAAAGTGTGTTGTGGTCGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTTGGCCAAAAGGCCTCATATCTTGGT
Intron 6 GTAGTTGTTT ... TACTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.59 | 81 | 21 | 15.3 |
| A2 | 19.75 | 65 | 16 | 9.8 |
| A3 | 14.77 | 75 | 13 | 9.7 |
| A4 | 18.81 | 82 | 19 | 23.4 |
| A5 | 24.66 | 55 | 18 | 8.2 |
| A6 | 16.67 | 120 | 24 | 24.1 |
| A7 | 14.08 | 144 | 23.6 | 44.4 |
| A8 | 16.24 | 98 | 19 | 18 |
| A9 | 9.4 | 135 | 14 | 36.5 |
| A10 | 9.46 | 134 | 14 | 31.5 |
>TRINITY_DN131085_c1_g1_i11 from sample A1 / Example spliced isoformAGGAAAGTAAGACACTGAAGCTCGACTCGAGGCAAAGTATTAGTTTAACATAGATAAATAGGTATTGAAGGTGTTTTTTTTTTCAACCGAAGGTATTGAAGGTGTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGT
AACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAACTTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTGCGCGCGTGTCACAGCTTACCAATGCTGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTCTGAACAGCTAAAAGGA
AATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACAGCTTTGCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAGAAACCATCTGCAATTCAAGTCCAATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCTGGGAAAACGGCAGCAT
TTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGGGAACTGGCAATTCAGATTGCAGAGCAGTTTGAAGCACTGGGATCCGGCATTGGTGTAAAGTGTGTCGTGGTTGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTTGGCCAAAAGGCCTCAT
ATCTTGGTGGGAACTCCAGGACGTCTTTTAGATCATTTATCAAATACAAAGGGCTTCAATCTACGGACATTGAAGTATTTGGTGTTAGATGAAGCAGACAGGCTGCTGAACATGGATTTTGAACAGGAAATTAATGAAATCCTTAAGGTTATTCCCAGGGAGAGGAATACATATTTATTCTCAGCAACAATGACAAATAA
GGTGGCTAAGCTTCAGAGAGCATGTCTGAAGAATCCTGCAAAGGTTGAGGTTTCTTCAAAGTACTCGACCGTGGATACATTGAAACAGCAATATCTTTTTGTTCCTGCAAAGCATAAGGATTGCTATCTTGTTTTTCTTTTAAATGAGATGTCTGGAAGTACTACAATGGTTTTCACTCGCACATGTGAATCTACAAGGC
GCCTTGCTTTGATTCTCCGAAATCTTGGACTCGAGGCCATTCCTATAAGTGGGCAAATGAGTCAGCCAAAACGGATAGGGGCTCTAAACAAGTTCAAGGCTGGAGAGCGTAACATCCTTATCTGCACTGATGTTGCTAGCAGAGGGCTAGATATTCCTTCTGTTGATATGGTTATCAACTATGATATACCTACAAACTCG
AAGGTTAGTACAAAATATTTATAGAGGTTTAAGTTGGAAAAATGTGGAATGATGCAAATGCAGATGAAACAAATCTTGGAAATGTTATTAACAAAAAATACGAACTATTTTTCTTGGTGATACATATAAACCCGGATTTGCAAATTCTAATGTTTCCAGTTTCCACTTTTGCAAACAACTCTGCCC
>TRINITY_DN131085_c1_g1_i4 from sample A1 / Example unspliced isoform:AGGAAAGTAAGACACTGAAGCTCGACTCGAGGCAAAGTATTAGTTTAACATAGATAAATAGGTATTGAAGGTGTTTTTTTTTTCAACCGAAGGTATTGAAGGTGTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGT
AACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAACTTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTGCGCGCGTGTCACAGCTTACCAATGCTGGTAACTCCTTTTCATAGCAATTTTCTTAAAGGAGGTAGGGACTTTTGAAGTCGTAATCACAGTTCAAATT
CACAGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTCTGAACAGCTAAAAGGAAATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACAGCTTTGCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAGAAACCATCTGCAATTCAAGTCC
AATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCTGGGAAAACGGCAGCATTTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGgtagttgttttaagtcattggtcaagttccagggtttcgagcattcatcacc
ttgaattgtatcttcttctgttttacgtccttactttccagGGAACTGGCAATTCAGATTGCAGAGCAGTTTGAAGCACTGGGATCTGGCATTGGTGTAAAGTGTGTTGTGGTCGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTTGGCCAAAAGGCCTCATATCTTGGTGGGAACTCCAGGACGTCTTTTAGA
TCATTTATCAAATACAAAGGGCTTCAATCTACGGACATTGAAGTATTTGGTATTTCTGATGTGTGCCTATTTACTGTTGTTTTTTTGGGGAACTTTTGTTATGCCAATGGGAGTTTTCTTGGAATTTTAGTGTAGGGACTATATATGAAACTCTAGATTTTTTCTCTTCCTAAATCCTAAAACAGTAAATTTTAATGACA
GTAGTGAAGTTCGAGTGAAGAAATCTGAAAGGAAATGAGGTTGGAGAAAATAAACTTAGGATTTTTGTGAACCTCTTCAAGGAAAGAATATTGTTGGATGTAAATGGAAAATAAATTCAAAGCTCATTATTCCATTGATAAGTACAAAGAAACCTGTGACATGTGGTGAAGCATTTCCTTTTGCTTGGAAGTTGTGTTGA
GAGGTATCTATTTTGTCAAAATCACCCAGGGCTCCCACGATGATTCATCCTGTTATTCGAGGGTACTGCTTGCTGGGTTTTGAGATTTAGGTCTTATTGTGGTGAATAATTTGTTCTTACCACTCCACCACAACCCAACATTGTTGTCATATATATTGATATTTTCTATAGCAAAAGCCATGGCCTTTGAAGGCCATTTT
TGAAGGAGACATTGATTGTTATTTTTAATTTCTTCTTTAGCTTGAGGTGTCTTTCAGAAGCCTTGCTATTTCATTTAACATCATGTGGTTTTGAATTTTAGGTGTTAGATGAAGCAGACAGGCTGCTGAACATGGATTTTGAACAGGAAATTAATGAAATCCTTAAGGTTATTCCCAGGGAGAGGAATACATATTTATTC
TCAGCAACAATGACAAATAAGGTATTGTAATTACACATGTCAAATTGTAGTTCATATTGAATGTCTTTGGGATTTTAAGCTTTCTATGTAATTTAGTTTTTTTCTTATCGATTCATAGTTTGGTTCTTCATTCTTCTGGTTTGTTTTGGCTGCAATACCAGAAACCATTACTAGATTTGACAAGAGATGTCTCACAAAAG
AACAAAAATCACAACATAGTATCACTAGCTGATTTACAACTGAAAAGGATGTATTATTATTCACATTCCATTGGAAGGTAGTTTGCACATTTTAGTTGTACGAGTAGGTTTTTGATATAGATGTGTAGTATACTGTTCATTGCTTTTTAATTTAGCAACTTTTATAGACGAACCTGTTTG
Intron 7 GTATTTCTGA ... TGAATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.84 | 126.6 | 22.3 | 39.7 |
| A2 | 16.5 | 80 | 14.7 | 15.9 |
| A3 | 22.9 | 93 | 20.7 | 27.7 |
| A4 | 18.26 | 101 | 23.5 | 22.7 |
| A5 | 18.11 | 65 | 13.2 | 14.5 |
| A6 | 13.33 | 182 | 24.8 | 28.1 |
| A7 | 17.82 | 259 | 34.3 | 56.4 |
| A8 | 21.02 | 154.5 | 21.7 | 41.4 |
| A9 | 17.63 | 250 | 30.6 | 54 |
| A10 | 14.84 | 241 | 31.9 | 42.7 |
>TRINITY_DN131085_c1_g1_i11 from sample A1 / Example spliced isoformAGGAAAGTAAGACACTGAAGCTCGACTCGAGGCAAAGTATTAGTTTAACATAGATAAATAGGTATTGAAGGTGTTTTTTTTTTCAACCGAAGGTATTGAAGGTGTTTATTTCACGTAGGTAAATTGGTTTTATTTATTTTAAATGTATAAATTTTAAGATCAGTGTTTATAAAATGTAAAACAACTTTTATAATTTCGGT
AACTAAGACCTAGACCAACCTCCCCACCAAGTCCACAAGCCTTCCTTCAGGCAGAAAACTTCAGCCAGGGATTGCTGTAGATTGCGGGTGGCGGGTTTCTGTGCGCGCGTGTCACAGCTTACCAATGCTGGAAAACGCAAGAAAAAACAGAAACCCTAACAGGGTCTGAATTAGAATCGAGCTCTGAACAGCTAAAAGGA
AATTATGGCGGTCGTTGAAGAAGAAGAAGAGGAGGTTCACAGCTTTGCCAGTTTGGGCGTTTGTGAACAGCTAGCCGAAGCCTGCGATGCTTTGGGATGGAAGAAACCATCTGCAATTCAAGTCCAATCTCTTCCCCTCGCCCTGGAAGGCAGGGATTTGATTGGGCTGGCACAGACGGGTTCTGGGAAAACGGCAGCAT
TTGCAATTCCAATTCTGCAGGCACTTCTTGACAAACCGCAGCCATTGTTTGCTTGTGTCCTTTCTCCAACGAGGGAACTGGCAATTCAGATTGCAGAGCAGTTTGAAGCACTGGGATCCGGCATTGGTGTAAAGTGTGTCGTGGTTGTTGGCGGTGTTGACATGATGGCACAAGCAATAGCTTTGGCCAAAAGGCCTCAT
ATCTTGGTGGGAACTCCAGGACGTCTTTTAGATCATTTATCAAATACAAAGGGCTTCAATCTACGGACATTGAAGTATTTGGTGTTAGATGAAGCAGACAGGCTGCTGAACATGGATTTTGAACAGGAAATTAATGAAATCCTTAAGGTTATTCCCAGGGAGAGGAATACATATTTATTCTCAGCAACAATGACAAATAA
GGTGGCTAAGCTTCAGAGAGCATGTCTGAAGAATCCTGCAAAGGTTGAGGTTTCTTCAAAGTACTCGACCGTGGATACATTGAAACAGCAATATCTTTTTGTTCCTGCAAAGCATAAGGATTGCTATCTTGTTTTTCTTTTAAATGAGATGTCTGGAAGTACTACAATGGTTTTCACTCGCACATGTGAATCTACAAGGC
GCCTTGCTTTGATTCTCCGAAATCTTGGACTCGAGGCCATTCCTATAAGTGGGCAAATGAGTCAGCCAAAACGGATAGGGGCTCTAAACAAGTTCAAGGCTGGAGAGCGTAACATCCTTATCTGCACTGATGTTGCTAGCAGAGGGCTAGATATTCCTTCTGTTGATATGGTTATCAACTATGATATACCTACAAACTCG
AAGGTTAGTACAAAATATTTATAGAGGTTTAAGTTGGAAAAATGTGGAATGATGCAAATGCAGATGAAACAAATCTTGGAAATGTTATTAACAAAAAATACGAACTATTTTTCTTGGTGATACATATAAACCCGGATTTGCAAATTCTAATGTTTCCAGTTTCCACTTTTGCAAACAACTCTGCCC
>TRINITY_DN131085_c1_g1_i16 from sample A1 / Example unspliced isoform:GATAACGTAACTAAGGGACATGACTGTTCAACCACTTGTGACTAGTCAATGCATATAAGTATACTGTCACATGGCATTGTATCAATTATATATATATAGTATTTGTCCTTTATTGATTTCAAATCATTGTCCTTATGCTGGATATTCCTCAGTTAATTAATTATTGTTCATTACATAAACTTGGGAAATGTTTATTAAAT
TATTACTAGTCAATTTTGTCAGACATCCACTTTTCATTTCTTTTAATCAATTTCTAGCTGTGATGTGCTTATCTTAAGACTGTCTAGACTAGAGAGGTCTTAGGACATTGTGGTACGTTTGAGAAATACCACCTCTCTCATGTTGAAGTTTGATCTTATTCGTTTTTTAATGAACTTGTACATTGTTTCTTTCATGCCTT
GGAATGCTTGAGCCTTGATATAGACTTGCAGTTCAGTTGTTTATATTTATAATTTGTCAACTAACTCTTAACCTGTTGGTTGCAATTCGTGAGAGATCTTGATTATTTCATTAGCTCTGCCTCATCTTCTTTTGATCTCCTGTCAATGTTGCTGCAAAATGCATTTACTTCTAAATTAAAGGAATATGAAATCTAACATT
TTTACTGCTTGTTTCCAACAGGTGGGAACTCCAGGACGTCTTTTAGATCATTTATCAAATACAAAGGGCTTCAATCTACGGACATTGAAGTATTTGgtatttctgatgtgtgcctatttactgttgtttttttggggaacttttgttatgccaatgggagttttcttggaattttagtgtagggactatatatgaaactc
tagattttttctcttcctaaatcctaaaacagtaaattttaatgacagtagtgaagttcgagtgaagaaatctgaaaggaaatgaggttggagaaaataaacttaggatttttgtgaacctcttcaaggaaagaatattgttggatgtaaatggaaaataaattcaaagctcattattccattgataagtacaaagaaac
ctgtgacatgtggtgaagcatttccttttgcttggaagttgtgttgagaggtatctattttgtcaaaatcacccagggctcccacgatgattcatcctgttattcgagggtactgcttgctgggttttgagatttaggtcttattgtggtgaataatttgttcttaccactccaccacaacccaacattgttgtcatata
tattgatattttctatagcaaaagccatggcctttgaaggccatttttgaaggagacattgattgttatttttaatttcttctttagcttgaggtgtctttcagaagccttgctatttcatttaacatcatgtggttttgaattttagGTGTTAGATGAAGCAGACAGGCTGCTGAACATGGATTTTGAACAGGAAATTA
ATGAAATCCTTAAGGTTATTCCCAGGGAGAGGAATACATATTTATTCTCAGCAACAATGACAAATAAGGT