sp|Q9C5M1|YCED2_ARATH ----> Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic

Intron 1 GCGTCCGAGA ... TATTCAGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	75	1	5	1
A2	100	0	2	4
A3	83.33	1	2	8
A4	100	0	1	0
A5	20	4	0	2
A6	64.29	5	5	13
A7	66.67	7	11	17
A8	50	7	3	11
A9	52.63	9	8	12
A10	70	3	4	10

>TRINITY_DN39601_c0_g1_i4 from sample A7 / Example spliced isoform

CTTGACCACATAAACGCTCGTCAGCTATCTGTGGGTATCCAATCTGCCACTACGCTAGGCTGAAGCATGATGACCCAAGCCATTCTCTCCTTGCAGACTACACTACCTCTTGCCTCGACGTTTTCATTTTCGTTTACACGCTCATTTTTGGAAGGATTCACAAGGTTTTCAAAAGCACCGGAAAAGTCTCATGCACAGAG
GGAGTATTATGTATCACACTGTCTCTGCATGAGGAAACAACTGTCTGGGGAAACGAATGAGCGTTACGAGCATGCTGGATTTGGCTACAGTGTTGATGGAAGGGTTATATCATCAGTTTCTAGGCAATGTAGCTATTGCTGTGCCAAGTACACTAATCAGGTGGATGCCTCCTTCAGTGCCTGGTGTATACCAACAAATA
GCTCTTTTAGTCATTTTCAGAAGGCTGGCGAAGTCAATGACGATCCTTCTATAATTTATTTTCCTCCAGGGAGAGAAGAGGCTATTCTTGATGATTTTGTGAGGGATACAATTCGACTAAGCTGCTCTACAGGGGCAACATGTTCAGATGCATGTGAGAAATCAGGACTTGGCAAATGGGAATTTGATGATGAAAAAAGT
AGTTCCATTGACAAGAGATGGCTGCCCATATTAAAGGCAAATATAAATTGACTTGAACCCATACATAAAGGTCATAATGCAGTCATGACAAGTACTGCATAATGTTCAGCAATGTTATTCCTCAAGGTTAAATTTTCAATTTGTTAGTTCCTCTGGACCAATATTTTCTATTTTCATATAACTTCTTTAAGATTTGATCA
GCTTACACAGCTTGTTGAGTTTGCCAACAAAAAATATGTAGTTATATTAAGGATATTTTAGAACGCCACCAAAATAAGTATATTGCAGGTTGAGACATTCTTGAGATAAAGGACATCAAAGCTTCAAATATAAATGTAAATTTTTGTAACTCTTGGTCCAATAGATCCTACAGGGTCCCCTGTGGACATAAATAAAAAGA
TTCTATTCAATTCAAATTACAGAATATATATCAAGAGCT

>TRINITY_DN39601_c0_g1_i1 from sample A7 / Example unspliced isoform:

CTTGACCACATAAACGCTCGTCAGCTATCTGTGGGTATCCAATCTGCCACTACGCTAGGCTGAAGCATGATGACCCAAGCCATTCTCTCCTTGCAGACTACACTACCTCTTGCCTCGACGTTTTCATTTTCGTTTACACGCTCATTTTTGGAAGGATTCACAAGGTTTTCAAAAGCACCGGAAAAGTCTCATGCACAGAG
GGAGTATTATGTATCACACTGTCTCTGCATGAGGAAACAACTGTCTGGGGAAACGAATGAGCGTTACGAGgcgtccgagaagaagtggatacaagtcatcccgcgggctgattacccttaagagtagcgaggggaaatggacagattcgtggacttccgagcacataatatccctcgaagccctcggattgaaggatttg
gtctctgatgctgaggctgacggaagtaatgatgaagtggtcgttactttatctattcagaagCATGCTGGATTTGGCTACAGTGTTGATGGAAGGGTTATATCATCAGTTTCTAGGCAATGTAGCTATTGCTGTGCCAAGTACACTAATCAGGTGGATGCCTCCTTCAGTGCCTGGTGTATACCAACAAATAGCTCTTT
TAGTCATTTTCAGAAGGCTGGCGAAGTCAATGACGATCCTTCTATAATTTATTTTCCTCCAGGGAGAGAAGAGGCTATTCTTGATGATTTTGTGAGGGATACAATTCGACTAAGCTGCTCTACAGGGGCAACATGTTCAGATGCATGTGAGAAATCAGGACTTGGCAAATGGGAATTTGATGATGAAAAAAGTAGTTCCA
TTGACAAGAGATGGCTGCCCATATTAAAGGCAAATATAAATTGACTTGAACCCATACATAAAGGTCATAATGCAGTCATGACAAGTACTGCATAATGTTCAGCAATGTTATTCCTCAAGGTTAAATTTTCAATTTGTTAGTTCCTCTGGACCAATATTTTCTATTTTCATATAACTTCTTTAAGATTTGATCAGCTTACA
CAGCTTGTTGAGTTTGCCAACAAAAAATATGTAGTTATATTAAGGATATTTTAGAACGCCACCAAAATAAGTATATTGCAGGTTGAGACATTCTTGAGATAAAGGACATCAAAGCTTCAAATATAAATGTAAATTTTTGTAACTCTTGGTCCAATAGATCCTACAGGGTCCCCTGTGGACATAAATAAAAAGATTCTATT
CAATTCAAATTACAGAATATATATCAAGAGCT

Intron 2 GCGTCCGAGA ... CACTAATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	80	1	5	3
A2	100	0	2	1
A3	50	1	2	0
A4	100	0	1	0
A5	42.86	2	0	3
A6	62.16	7	5	18
A7	56.1	9	11	12
A8	72.73	3	3	13
A9	73.33	4	8	14
A10	65.22	4	4	11

>TRINITY_DN37499_c0_g1_i5 from sample A8 / Example spliced isoform

CAGAAATTACTTGACCACATAAACGCTCGTCAGCTATCTGTGGGTATCCAATCTGCCACTACGCTAGGCTGAAGCATGATGACCCAAGCCATTCTCTCCTTGCAGACTACACTACCTCTTGCCTCGACGTTTTCATTTTCGTTTACACGCTCATTTTTGGAAGGATTCACAAGGTTTTCAAAAGCACCGGAAAAGTCTCA
TGCACAGAGGGAGTATTATGTATCACACTGTCTCTGCATGAGGAAACAACTGTCTGGGGAAACGAATGAGCGTTACGAGGTGGATGCCTCCTTCAGTGCCTGGTGTATACCAACAAATAGCTCTTTTAGTCATTTTCAGAAGGCTGGCGAAGTCAATGACGATCCTTCTATAATTTATTTTCCTCCAGGGAGAGAAGAGG
CTATTCTTGATGATTTTGTGAGGGATACAATTCGACTAAGCTGCTCTACAGGGGCAACATGTTCAGATGCATGTGAGAAATCAGGACTTGGCAAATGGGAATTTGATGATGAAAAAAGTAGTTCCATTGACAAGAGATGGCTGCCCATATTAAAGGCAAATATAAATTGACTTGAACCCATACATAAAGGTCATAATGCA
GTCATGACAAGTACTGCATAATGTTCAGCAATGTTATTCCTCAAGGTTAAATTTTCAATTTGTTAGTTCCTCTGGACCAATATTTTCTATATTCATATAACTTCTTTAAGATTTGATCAGCTTACACAGCTTGTTGAGTTTGCCAACAAAAAATATGTAGTTATATTAAGGATATTTTAGAACGCCACCAAAATAAGTAT
ATTGCAGGTTGAGACATTCTTGAGATAAAGGACATCAAAGCTTCAAATATAAATGTAAATTTTTGTAACTCTTGGTCCAATAGATCCTACAGGGTCCCCTGTGGACATAAATAAAAAGATTCTATTCAATTCAAATTACAGAATATATATCAAGAGCAAGAAATTTGAAAGAAGTTTAATATTGTTAAACTCATAGTCTT
GTCCCAGCTCTATAAGGCTTGGACCTTATGAAGCCTACTGAGACTAATGATATAATACTACTATGGTTG

>TRINITY_DN37499_c0_g1_i1 from sample A8 / Example unspliced isoform:

CAGAAATTACTTGACCACATAAACGCTCGTCAGCTATCTGTGGGTATCCAATCTGCCACTACGCTAGGCTGAAGCATGATGACCCAAGCCATTCTCTCCTTGCAGACTACACTACCTCTTGCCTCGACGTTTTCATTTTCGTTTACACGCTCATTTTTGGAAGGATTCACAAGGTTTTCAAAAGCACCGGAAAAGTCTCA
TGCACAGAGGGAGTATTATGTATCACACTGTCTCTGCATGAGGAAACAACTGTCTGGGGAAACGAATGAGCGTTACGAGgcgtccgagaagaagtggatacaagtcatcccgcgggctgattacccttaagagtagcgaggggaaatggacagattcgtggacttccgagcacataatatccctcgaagccctcggattg
aaggatttggtctctgatgctgaggctgacggaagtaatgatgaagtggtcgttactttatctattcagaagcatgctggatttggctacagtgttgatggaagggttatatcatcagtttctaggcaatgtagctattgctgtgccaagtacactaatcagGTGGATGCCTCCTTCAGTGCCTGGTGTATACCAACAAA
TAGCTCTTTTAGTCATTTTCAGAAGGCTGGCGAAGTCAATGACGATCCTTCTATAATTTATTTTCCTCCAGGGAGAGAAGAGGCTATTCTTGATGATTTTGTGAGGGATACAATTCGACTAAGCTGCTCTACAGGGGCAACATGTTCAGATGCATGTGAGAAATCAGGACTTGGCAAATGGGAATTTGATGATGAAAAAA
GTAGTTCCATTGACAAGAGATGGCTGCCCATATTAAAGGCAAATATAAATTGACTTGAACCCATACATAAAGGTCATAATGCAGTCATGACAAGTACTGCATAATGTTCAGCAATGTTATTCCTCAAGGTTAAATTTTCAATTTGTTAGTTCCTCTGGACCAATATTTTCTATATTCATATAACTTCTTTAAGATTTGAT
CAGCTTACACAGCTTGTTGAGTTTGCCAACAAAAAATATGTAGTTATATTAAGGATATTTTAGAACGCCACCAAAATAAGTATATTGCAGGTTGAGACATTCTTGAGATAAAGGACATCAAAGCTTCAAATATAAATGTAAATTTTTGTAACTCTTGGTCCAATAGATCCTACAGGGTCCCCTGTGGACATAAATAAAAA
GATTCTATTCAATTCAAATTACAGAATATATATCAAGAGCAAGAAATTTGAAAGAAGTTTAATATTGTTAAACTCATAGTCTTGTCCCAGCTCTATAAGGCTTGGACCTTATGAAGCCTACTGAGACTAATGATATAATACTACTATGGTTG