sp|Q9FJ98|RPD6A_ARATH ----> DNA-directed RNA polymerases II, IV and V subunit 6A

Intron 1 GTATGATGTT ... CGGATTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	6.5	187	11	15
A2	5	209	14	8
A3	1.79	220	3	5
A4	3.6	214	6	10
A5	6.25	105	2	12
A6	0.19	1615	0	6
A7	0.39	1530	2	10
A8	0.65	1308	7	10
A9	0.41	1581	7	6
A10	0.56	1241	7	7

>TRINITY_DN43251_c4_g4_i5 from sample A7 / Example spliced isoform

CATGGTTGTCCACCAGTTTCTTTGTTTGCCCGCAGGTTTCTGGTCTGCTCTATACTCGCCGTGCTAGGGTTCAACAGGTTGCTTGTAGACGTCAACAGAGGCCGTGGGCATCTTGAATCATGAATCATCTTTGAATCATGCCATAGCAAAAGCTTGCGGCTGCGGGAACGGCCAAATGATTCCTCTACATGTTGTTGCGA
CGTTGTTGGGTACCCTTGGTAGCCGTCTGTGATAGGATTGCTAAGTTGCGACTTCAAAGTTTAGGGGTTGGTCAGCGAGGGTTTCTCAAACTTCTACAAGATAGGGTTTTCATGGGTTTCTAAGCTCTTTCGCAACCGAGGGTGTTACCAGGTTTCGAGGGTTTCTCGAGCTTAATTTCATGTACATTGATTCGTTACGC
CAAATGGATTTGATTAGTTTATGGTTTTGACATGCTTGCAGATACGAAGAGGAGCCTCCTGAACCTGAAATTGAGATACGAAGAGGAGCCTCCCGAACTTGAAATTGAGAATTTCATTCCTCTGTAGGAAGAGGTAGGTGCAGAGGACGAGGAACATGAAGAAGTTCCCATTGAACTTGAAGGGGCTGATAAAGAAACTG
CAGAACAGGAACAACCAAGCGATAAGCCTCGAAAAACCTCGAAGTTCA

>TRINITY_DN43251_c4_g4_i1 from sample A7 / Example unspliced isoform:

CATGGTTGTCCACCAGTTTCTTTGTTTGCCCGCAGGTTTCTGGTCTGCTCTATACTCGCCGTGCTAGGGTTCAACAGGTTGCTTGTAGACGTCAACAGAGGCCGTGGGCATCTTGAATCATGAATCATCTTTGAATCATGCCATAGCAAAAGCTTGCGGCTGCGGGAACGGCCAAATGATTCCTCTACATGTTGTTGCGA
CGTTGTTGGGTACCCTTGGTAGCCGTCTGTGATAGGATTGCTAAGTTGCGACTTCAAAGTTTAGGGGTTGGTCAGCGAGGGTTTCTCAAACTTCTACAAGATAGGGTTTTCATGGGTTTCTAAGCTCTTTCGCAACCGAGGGTGTTACCAGGTTTCGAGGGTTTCTCGAGCTTAATTTCATGTACATTGATTCGTTACGC
CAAATGGATTTGATTAGTTTATGGTTTTGACATGCTTGCAGATACGAAGAGGAGCCTCCTGAACCTGAAATTGAGATACGAAGAGGAGCCTCCCGAACTTGAAATTGAGgtatgatgttgtccattttccttttgtctcggtccaaacgaaaaccggggaaaacccttttctgctagagttcaatttatgctcaaactgt
tgtgagctcttcggatttcagAATTTCATTCCTCTGTAGGAAGAGGTAGGTGCAGAGGACGAGGAACATGAAGAAGTTCCCATTGAACTTGAAGGGGCTGATAAAGAAACTGCAGAACAGGAACAACCAAGCGATAAGCCTCGAAAAACCTCGAAGTTCA

Intron 2 GTATGATGTT ... TCCTCTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	5.58	679	11	41
A2	5.67	816	14	49.5
A3	5.49	826.5	3	48.5
A4	4.45	713	6	33.5
A5	6.73	457	2	33.5
A6	4.38	5629	0	263
A7	4.56	5289	2	258.5
A8	5.13	4117.5	7	226
A9	4.15	5151	7	228
A10	4.12	4795	7	209.5

>TRINITY_DN43251_c4_g4_i2 from sample A7 / Example spliced isoform

CATGGTTGTCCACCAGTTTCTTTGTTTGCCCGCAGGTTTCTGGTCTGCTCTATACTCGCCGTGCTAGGGTTCAACAGGTTGCTTGTAGACGTCAACAGAGGCCGTGGGCATCTTGAATCATGAATCATCTTTGAATCATGCCATAGCAAAAGCTTGCGGCTGCGGGAACGGCCAAATGATTCCTCTACATGTTGTTGCGA
CGTTGTTGGGTACCCTTGGTAGCCGTCTGTGATAGGATTGCTAAGTTGCGACTTCAAAGTTTAGGGGTTGGTCAGCGAGGGTTTCTCAAACTTCTACAAGATAGGGTTTTCATGGGTTTCTAAGCTCTTTCGCAACCGAGGGTGTTACCAGGTTTCGAGGGTTTCTCGAGCTTAATTTCATGTACATTGATTCGTTACGC
CAAATGGATTTGATTAGTTTATGGTTTTGACATGCTTGCAGATACGAAGAGGAGCCTCCTGAACCTGAAATTGAGATACGAAGAGGAGCCTCCCGAACTTGAAATTGAGGAAGAGGTAGGTGCAGAGGACGAGGAACATGAAGAAGTTCCCATTGAACTTGAAGGGGCTGATAAAGAAACTGCAGAACAGGAACAACCAA
GCGATAAGCCTCGAAAAACCTCGAAGTTCA

>TRINITY_DN43251_c4_g4_i1 from sample A7 / Example unspliced isoform:

CATGGTTGTCCACCAGTTTCTTTGTTTGCCCGCAGGTTTCTGGTCTGCTCTATACTCGCCGTGCTAGGGTTCAACAGGTTGCTTGTAGACGTCAACAGAGGCCGTGGGCATCTTGAATCATGAATCATCTTTGAATCATGCCATAGCAAAAGCTTGCGGCTGCGGGAACGGCCAAATGATTCCTCTACATGTTGTTGCGA
CGTTGTTGGGTACCCTTGGTAGCCGTCTGTGATAGGATTGCTAAGTTGCGACTTCAAAGTTTAGGGGTTGGTCAGCGAGGGTTTCTCAAACTTCTACAAGATAGGGTTTTCATGGGTTTCTAAGCTCTTTCGCAACCGAGGGTGTTACCAGGTTTCGAGGGTTTCTCGAGCTTAATTTCATGTACATTGATTCGTTACGC
CAAATGGATTTGATTAGTTTATGGTTTTGACATGCTTGCAGATACGAAGAGGAGCCTCCTGAACCTGAAATTGAGATACGAAGAGGAGCCTCCCGAACTTGAAATTGAGgtatgatgttgtccattttccttttgtctcggtccaaacgaaaaccggggaaaacccttttctgctagagttcaatttatgctcaaactgt
tgtgagctcttcggatttcagaatttcattcctctgtagGAAGAGGTAGGTGCAGAGGACGAGGAACATGAAGAAGTTCCCATTGAACTTGAAGGGGCTGATAAAGAAACTGCAGAACAGGAACAACCAAGCGATAAGCCTCGAAAAACCTCGAAGTTCA

Intron 3 GTTTCGAGGG ... TGAAATTGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	99.29	3	31	422
A2	99.46	3	49	548
A3	98.69	7	37	528
A4	98.57	7	29	481
A5	98.77	4	23	320
A6	99.71	10	53	3461
A7	99.76	8	62	3330
A8	99.65	9	32	2585
A9	99.28	23	61	3177
A10	99.81	6	32	3198

>TRINITY_DN43251_c4_g4_i3 from sample A7 / Example spliced isoform

CTGCTGTGATTGTAACTTTGGAGCTCAGCCATGGCGGACGAGGACTACAACGACTTTGACGGAGGAGATGTAGGGTAAGAGGCCCCTTCTTCGCCTTCACCTCCGTCAAAGTAGATGAGGGATTTCGGGTTTCGGGGGATTTTTTTCTTTCTTTCTTATAGAAGGGTTGATACAACTAATTCGCTCAGATAAGGGGCAGC
GAGGGTTTCTCAAACTTATACAAGACAGGGTTTTCATGGGTTTCTAAGCTCTTTTGCAACTGAGGGTGTTACCAGATACGAAGAGGAGCCTCCCGA

>TRINITY_DN43251_c4_g4_i6 from sample A7 / Example unspliced isoform:

CTGCTGTGATTGTAACTTTGGAGCTCAGCCATGGCGGACGAGGACTACAACGACTTTGACGGAGGAGATGTAGGGTAAGAGGCCCCTTCTTCGCCTTCACCTCCGTCAAAGTAGATGAGGGATTTCGGGTTTCGGGGGATTTTTTTCTTTCTTTCTTATAGAAGGGTTGATACAACTAATTCGCTCAGATAAGGGGCAGC
GAGGGTTTCTCAAACTTATACAAGACAGGGTTTTCATGGGTTTCTAAGCTCTTTTGCAACTGAGGGTGTTACCAGgtttcgagggtttctcgagtttaatttcgtgtacatgattcgttacgcctctggatttgattaatttatggttttgacatgcttgcagatacgaagaggagcctcctgaacctgaaattgagATA
CGAAGAGGAGCCTCCCGAACTTGAAATTGAGGAAGAGGTAGGTGCAGAGGACGAGGAACATGAAGAAGTTCCCATTGAACTTGAAGGGGCTGATAAAGAAACTGCAGAACAGGAACAACCAAGCGATAAGCCTCGAAAAACCTCGAAGTTCA