sp|Q9FGL0|WTR44_ARATH ----> WAT1-related protein At5g47470
Intron 1 GTGATTGATC ... TTTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 15 | 1.9 | 25 |
| A2 | 42.11 | 22 | 1.1 | 16 |
| A3 | 57.14 | 12 | 1.1 | 16 |
| A4 | 38.1 | 26 | 6 | 16 |
| A5 | 48.72 | 20 | 1 | 19 |
| A6 | 51.16 | 42 | 1.6 | 44 |
| A7 | 43.1 | 66 | 4.4 | 50 |
| A8 | 41.94 | 36 | 1.8 | 26 |
| A9 | 41.9 | 61 | 2.7 | 44 |
| A10 | 36.72 | 81 | 7.7 | 47 |
>TRINITY_DN96167_c0_g1_i2 from sample A4 / Example spliced isoformAATAGAGATTCAGCTTGCATTTGTCACTGATGACAATCCTCACAGTCATCTTGACAACTAAATTTGCCAAAATTGAAAAAGACACTACCTAATGGAATCTGGAAAATATCTATGGAAGATCGCCTAAAAGTCTTAGCGCAACCCACAGATGACATGTTACAGCACTTAGATTCTTCAGTCTGGACTTTATACCGGCACGA
AGTTAGCCTTTAGTTTCCTGTTCAAATTACCATCTGTAACGTGAAAAATTAGGCAAGCGGGGTCTTGAATTGAAGAAATTGAAGAAGATCTAATCGAAAATGTACAGTGACAAACGCCCTTTCTGTAGTCTGGAAGTCTTGGGAATCTATGCCTCCTTGCTGGGTTTGCAGATTGGTTATGCAGTGAACGGTGTTCTTGT
GGGGAATGAGTTATCAAAGGGGCTGAACCCTCTGGTTCTCATTGTTTATTCCAACGGGGTTGGAGCACTAGTGCTTACACCATTTGCCCTCTTTCTTGAAAAGAGGAAGCGGCCACCAACAGTGAGTTTACCTCTGTTCGGACGGTTCTTGTTGCTGTCTATTGGAGCGTCTGCATTTCAAACGTTCTTGCTAATGGGAT
TGAAAGATACGTCTCCTGCCTTTGCTTCGGCAATGCCTAACTTGGCTCCAGCAATTATATTCGTCATGGCATGGGCTTTAGGGTTGGTATTCGCACTTCTAACTCATTTGTTCCATTCAGTCTCTATATCTATATATTTTCTTATGAGTTTTTACAGATTTCAGAAACTAAACATTCTGTACCTTCGGTTTACAGGTTTC
AGAAATTAAACATTCTTTAACTATGTGGATACTATTTTCCAAAGATTACACAGTTCTTGCAGATAAGAAGATAAAACTCAAACTCGAAACAATACTCTACAATACTCTAGAATTAATTTAACATACAAATCATAACAAAAGAAAACCCTTCGTTGGTAAACAATTTTTTTGAGAATATATTGATTTGCAGGAATTTACAA
GGCTAGTACTATGGCTCTCCCAGATATCTCCTCACGTGTATGTTTCACCTTTTA
>TRINITY_DN96167_c0_g1_i3 from sample A4 / Example unspliced isoform:AATAGAGATTCAGCTTGCATTTGTCACTGATGACAATCCTCACAGTCATCTTGACAACTAAATTTGCCAAAATTGAAAAAGACACTACCTAATGGAATCTGGAAAATATCTATGGAAGATCGCCTAAAAGTCTTAGCGCAACCCACAGATGACATGTTACAGgtgattgatccactgataatggcttcttggttttggat
gcttttcaatattatcttcaaagcaaaagcctgtcacgcatcatatttttgacaatgttgtacttggacttaattgttatcttccaccgcttcacaactttaaaatcatcagtattgctttattgcagCACTTAGATTCTTCAGTCTGGACTTTATACCGGCACGAAGTTAGCCTTTAGTTTCCTGTTCAAATTACCATC
TGTAACGTGAAAAATTAGGCAAGCGGGGTCTTGAATTGAAGAAATTGAAGAAGATCTAATCGAAAATGTACAGTGACAAACGCCCTTTCTGTAGTCTGGAAGTCTTGGGAATCTATGCCTCCTTGCTGGGTTTGCAGATTGGTTATGCAGTGAACGGTGTTCTTGTGGGGAATGAGTTATCAAAGGGGCTGAACCCTCTG
GTTCTCATTGTTTATTCCAACGGGGTTGGAGCACTAGTGCTTACACCATTTGCCCTCTTTCTTGAAAAGAGGAAGCGGCCACCAACAGTGAGTTTACCTCTGTTCGGACGGTTCTTGTTGCTGTCTATTGGAGCGTCTGCATTTCAAACGTTCTTGCTAATGGGATTGAAAGATACGTCTCCTGCCTTTGCTTCGGCAAT
GCCTAACTTGGCTCCAGCAATTATATTCGTCATGGCATGGGCTTTAGGCATGGAGAAAGTGGACATTAAGTGCATTGGCAGCAGATCCAAAATTGCGGGAACTCTACTTTGTGTGTCTGGAGCAATGGCAATGAGTTTCCTACGAGGTCCCGCTCTAAGCCAAATCTGGGCTCCAATGATGCATTCAGTTTCTGATCTTA
ATACAGTGCACCCAGTGGAAAACATTCTTGTTAGCTTTCTCCAGGTTGGAAATGGAGATTTAAGCAAACAGATTAGAGGGAGTATTTACCTCGTCTCAGCAGTGACTATCTTATCCACTACCTTGATACTGCAGGCAGAGACATTGAAGATGTATCCGGCCCCATTGTCACAAACATCAATTACTGCCATTCTAGGCTCC
ATTCTGGCTACTGTCCTAATAATGGTTCAGGACAGAGGATTCAAGCCAACATCATGGGTACTAGATAGGAGCGGGTTTTTTACTGTAGTCAATGGAGGAATCACCTGCACTGGAGTCGGACTTGCATTACAATTGTGGTGTATGCAGAAAAGAGGACCCGTATTCGTTACAATATTCAGCCCTGTGTCTACTGTGTTCTC
GGCAATCTTATCATCTTGGTTTCTGGGAGACACAGTGTATCTGGGAAGTGTGATGGGTGTACTTCTTATATTCGCTGGTCTCTACCTTGTTCTGTGGGGCAAATCCTATGACAGCGTTACCCACATCAAAATTACTTCAGAGAAAGTAGAGGAGGATCTACACACCGTAGATGAAGAACAACATCACCATCCTTCTTCTT
CCCAAGTTTTGGATGTGAAAATACCTCTGCTACGCTGATCACTACCAATCTCCCAATGAGAGATTCTATATATAATTGTAAAGGCACTAACCACAAATATAGTTCTGAGGATATGTAAGACCGGGTTGGATCTCTTGGTTTGGTTACTGGTACATAACACACTGGTTTGATCTCTTGGTTAAGGAATCATACGTGTGTGG
AAGAGCTTTCTAGCTCTAAGAAACTGAGGTTCTTTCTACCTCTGTGTCACGGAGCTTCCTAGCTCTCAGAAGCTAATGCTCTTTTTGATGAGCACAATCACATAGAATTGGGTTGATATATTGTTGATACGTAATAATCTTCACCAGACTTTTACACAACATTTTAACTTCTTTTTACCTTTGCGC
Intron 2 GTAAGTCTAG ... AATTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.71 | 59 | 5.7 | 30 |
| A2 | 28.57 | 35 | 3 | 14 |
| A3 | 36.51 | 40 | 1.8 | 23 |
| A4 | 30.99 | 49 | 3.4 | 22 |
| A5 | 36.84 | 12 | 0.3 | 7 |
| A6 | 32.66 | 200 | 10.8 | 97 |
| A7 | 30.6 | 195 | 18.1 | 86 |
| A8 | 30.89 | 217 | 12.2 | 97 |
| A9 | 31.96 | 198 | 12.5 | 93 |
| A10 | 28.18 | 158 | 10.7 | 62 |
>TRINITY_DN122571_c0_g2_i5 from sample A1 / Example spliced isoformGGTGATTGATCCACTGATAATGGCTTCTTGGTTTTGGATGCTTTTCAATATTATCTTCAAAGCAAAAGCCTGTCACGCATCATATTTTTGACAATGTTGTACTTGGACTTAATTGTTATCTTCCACCGCTTCACAACTTTAAAATCATCAGTATTGCTTTATTGCAGCACTTAGATTCTTCAGTCTGGACTTTATACCGG
CACGAAGTTAGCCTTTAGTTTCCTGTTCAAATTACCATCTGTAACGTGAAAAATTAGGCAAGCGGGGTCTTGAATTGAAGAAATTGAAGAAGATCTAATCGAAAATGTACAGTGACAAACGCCCTTTCTGTAGTCTGGAAGTCTTGGGAATCTATGCCTCCTTGCTGGGTTTGCAGATTGGTTATGCAGTGAACGGTGTT
CTTGTGGGGAATGAGTTATCAAAGGGGCTGAACCCTCTGGTTCTCATTGTTTATTCCAACGGGGTTGGAGCACTAGTGCTTACACCATTTGCCCTCTTTCTTGAAAAGAGGAAGCGGCCACCAACAGTGAGTTTACCTCTGTTCGGACGGTTCTTGTTGCTGTCTATTGGAGCGTCTGCATTTCAAACGTTCTTGCTAAT
GGGATTGAAAGATACGTCTCCTGCCTTTGCTTCGGCAATGCCTAACTTGGCTCCAGCAATTATATTCGTCATGGCATGGGCTTTAGGCATGGAGAAAGTGGACATTAAGTGCATTGGCAGCAGATCCAAAATTGCGGGAACTCTACTTTGTGTGTCTGGAGCAATGGCAATGAGTTTCCTACGAGGTCCCGCTCTAAGCC
AAATCTGGGCTCCAATGATGCATTCAGTTTCTGATCTTAATACAGTGCACCCAGTGGAAAACATTCTTGTTAGCTTTCTCCAGGTTGGAAATGGAGATTTAAGCAAACAGATTAGAGGGAGTATTTACCTCGTCTCAGCAGTGACTATCTTATCCACTACCTTGATACTGCAGGCAGAGACATTGAAGATGTATCCGGCC
CCATTGTCACAAACATCAATTACTGCCATTCTAGGCTCCATTCTGGCTACTGTCCTAATAATGGTTCAGGACAGAGGATTCAAGCCAACATCATGGGTACTAGATAGGAGCGGGTTTTTTACTGTAGTCAATGGAGGAATCACCTGCACTGGAGTCGGACTTGCATTACAATTGTGGTGTATGCAGAAAAGAGGACCCGT
ATTCGTTACAATATTCAGCCCTGTGTCTACTGTGTTCTCGGCAATCTTATCATCTTGGTTTCTGGGAGACACAGTGTATCTGGGAAGTGTGATGGGTGTACTTCTTATATTCGCTGGTCTCTACCTTGTTCTGTGGGGCAAATCCTATGACAGCGTTACCCACATCAAAATTACTTCAGAGAAAGTAGAGGAGGATCTAC
ACACCGTAGATGAAGAACAACATCACCATCCTTCTTCTTCCCAAGTTTTGGATGTGAAAATACCTCTGCTACGCTGATCACTACCAATCTCCCAATGAGAGATTCTATATATAATTGTAAAGGCACTAACCACAAATATAGTTCTGAGGATATGTAAGACCGGGTTGGATCTCTTGGTTTGGTTACTGGTACATAACACA
CTGGGTTGGATCTCTTGGTTTGGTTACTGGTACATAACACACTGGTTTGATCTCTTGGTTAAGGAATCATACGTGTGTGGAAGAGCTTTCTAGCTCTAAGAAACTGAGGTTCTTTCTACCTCTGTGTCACGGAGCTTCCTAGCTCTCAGAAGCTAATGCTCTTTTTGATGAGCACAATCACATAGAATTGGGTTGATATA
TTGTTGATACGTAATAATCTTCACCAGACTTTTACACAGCATTTTAACTTCTTTTTACCTTTGCAATGTTGGAAAGCATAAAACTGAAATAGCTCTAAAATCTCATCAGGAAT
>TRINITY_DN122571_c0_g2_i3 from sample A1 / Example unspliced isoform:GTTTTTTACTGTAGTCAATGGAgtaagtctagatgttgatcctctttcgtatttcttcaacacccccgaataacgtaatttgcgaataacaatgcaagcccttgttgctgatttatgaagaatttaatttggcagGGAATCACCTGCACTGGAGTCGGACTTGCATTACAATTGTGGTGTATGCAGAAAAGAGGACCCGT
ATTCGTTACAATATTCAGCCCTGTGTCTACTGTGTTCTCGGCAATCTTATCATCTTGGTTTCTGGGAGACACAGTGTATCTGGGAAGTGTGATGGGTGTACTTCTTATATTCGCTGGTCTCTACCTTGTTCTGTGGGGCAAATCCTATGACAGCGTTACCCACATCAAAATTACTTCAGAGAAAGTAGAGGAGGATCTAC
ACACCGTAGATGAAGAACAACATCACCATCCTTCTTCTTCCCAAGTTTTGGATGTGAAAATACCTCTGCTACGCTGATCACTACCAATCTCCC
Intron 3 GTAGGTGGTT ... ATTGTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.86 | 63 | 7.7 | 11 |
| A2 | 14 | 43 | 7.3 | 7 |
| A3 | 19.35 | 25 | 7.3 | 6 |
| A4 | 21.28 | 37 | 4 | 10 |
| A5 | 20 | 36 | 9.3 | 9 |
| A6 | 17.76 | 301 | 33.3 | 65 |
| A7 | 21.97 | 309 | 42.7 | 87 |
| A8 | 18.89 | 262 | 30.3 | 61 |
| A9 | 19.05 | 238 | 24 | 56 |
| A10 | 18.83 | 181 | 22.7 | 42 |
>TRINITY_DN41848_c0_g1_i4 from sample A7 / Example spliced isoformCGTTCAAATACACCTCTATTACATTTAGATTATATAATCTAAACAATTATACAATTCCAACAATTCTTTTGAACATATTATTACTTAGTAAATCCCCAGTATTCTCTAGCTTGCCATTTGGGGCCACATGAGATGCTAGGTAGCCTTACTTTACTTCCATTTTTTTTAAATTATTGCTTTGCTCAAGTGTTGATAGTCCA
GTTCACACTTTCATGGACGGCTTCAAAACTATATCCATCGGCTTGGCACTGGCTGATGCATAGGCTCGACCCCAACCCCCGTAGTTTCAAAGTACACAGCACGCAACAAAGAATAAAATTCACTCGCAGGAGAATTAAACACATAGGATTGCAAACAGAAATTTTAAATTTTGCATCAGCAAATATTTAAAATTTACAGA
CAGGCTCGAAGGCTTCCTGTTTCTCAGAACTCTACCGCACTACTTGGTTTCCACCCCCTCGCCGGTCTTGGCTCATCTTGCCAATTTTTTTTCACTCCCCTTACCGACCAAAATGTCCTCGCCGACCAGACTAGCACCAAAATGGTCGGGCAGAAAAATTAATGCGCCCCATTTGAATTCAACTACCACACATTAATGCA
CAAGCTACCCTACCTAGGAATATCAGTCGATCCCTAAATTTGACAAGGCGCCACGTTGCAGGCAGCGGAATCTGGAGCTCCTGGAATATCATAAAGTGGGACACGCGTGTAGATAAAAAGATATTTCTCCATGGAATAAGAGTATCTAGGCAAAGGAAACTTCAACACGTTTAAGTTGCACTTGGAAATTCATCCGGATC
GAGCTGTGCCATGAATTTGGTTGATCCCCCTGCATCACTAGCTTCCTATCTTCATTGCGCTGGAGCTTGGCTCTGGCTCTGGCTCTAGCTTTTTTTTATACTCTACCGGCATATTCTCTTTCACAATATAATAATAATAAAGTGAAGCATTTTCAGGATCGAACGTTCTCATAACGTTGATCCAGAAATTTATAGATTTC
AAACGTTAAACATCACCTCAATGTTGCAATGTGCATACCATTTCCAAAAGAAAAAACAGAACAGCGGGAATAGCACAGCATAATAATTTAGAGGATTTTACAAGGTAAACATTCAGGTTTTGTGGTGGGGCGCTTTATAAGGTAGATTTTAGTTATGCTATATATTAATTTGATGTATGAGATTCTTTTATTTGTGGGAT
AAGGGATCTTCTCTTTACAAAGGTTTAACTGTTAAAATCTACTACAAAGATGTACATATTCTACTCATTTGAATTTGAACCTATAACATCCTAAAAAGAAACACATATTCTTAATATTCTTAATAGTCAGACTCACTAATAGTTAGACTCACTGAAACTAGATTTATTAGATTTAGATTTATTGTTCTGTTTTGTTTTTT
TTCTTAATAATATACAAATCCAAATTTGTTTTTATTAAAGTTTTTTTCTCTTTTATAAAATATATATAGTTTGTATAGTTTGTAGAACAAGGTTTCTGTTATCTTTTAATTACTAAAGAGATTTACATCCCATCTAAATTTGAATTTATAACTTTTTATAATGCATCTGAAATGGCAGGTGGATCACTGTGAACTGTTTT
CCTTATACATTTTTCTCTAATTCGTTTGGCAAGATTGAATGATTAGTGATTTGTTTATCGCCAAAACCAGAAGTTAAATGTGAGTGTGATCTGTGTAGCATGGAGAAAGTGGACATTAAGTGCATTGGCAGCAGATCCAAAATTGCGGGAACTCTACTTTGTGTGTCTGGAGCAATGGCAATGAGTTTCCTACGAGGTCC
CGCTCTAAGCCAAATCTGGGCTCCAATGATGCATTCAGTTTCTGATCTTAATACAGTGCACCCAGTGGAAAACATTCTTGTTAGCTTTCTCCAGGTTGGAAATGGAGATTTAAGCAAACAGATTAGAGGGAGTATTTACCTCGTCTCAGCAGTGACTATCTTATCCACTACCTTGATACTGCAGGCAGAGACATTGAAGA
TGTATCCGGCCCCATTGTCACAAACATCAATTACTGCCATTCTAGGCTCCATTCTGGCTACTGTCCTAATAATGGTTCAGGACAGAGGATTCAAGCCAACATCATGGGTACTAGATAGGAGCGGGTTTTTTACTGTAGTCAATGGAGGAATCACCTGCACTGGAGTCGGACTTGCATTACAATTGTGGTGTATGCAGAAA
AGAGGACCCGTATTCGTTACAATATTCAGCCCTGTGTCTACTGTGTTCTCGGCAATCTTATCATCTTGGTTTCTGGGAGACACAGTGTATCTGGGAAGTGTGATGGGTGTACTTCTTATATTCGCTGGTCTCTACCTTGTTCTGTGGGGCAAATCCTATGACAGCGTTACCCACATCAAAATTACTTCAGAGAAAGTAGA
GGAGGATCTACACACCGTAGATGAAGAACAACATCACCATCCTTCTTCTTCCCAAGTTTTGGATGTGAAAATACCTCTGCTACGCTGATCACTACCAATCTCCCAATGAGAGATTCTATATATAATTGTAAAGGCACTAACCACAAATATAGTTCTGAGGATATGTAAGACCGGGTTGGATCTCTTGGTTTGGTTACTGG
TACATAACACACTGGTTTGATCTCTTGGTTAAGGAATCATACGTGTGTGGAAGAGCTTTCTAGCTCTAAGAAACTGAGGTTCTTTCTACCTCTGTGTCACGGAGCTTCCTAGCTCTCAGAAGCTAATGCTCTTTTTGATGAGCACAATCACATAGAATTGGGTTGATATATTGTTGATACGTAATAATCTTCACCAGACT
TTTACACAGCATTTTAACTTCTTTTTACCTTTGCAATGTTGGAAAGCATAAAACTGAAATAGCTCTAAAATCTCATCAGGAAAGTGATCAACAAATTACTAAAGGCAATGACAGAGTTTATTGAAAAATCTGTAACATGCTCATCAATTACTATCTACGGATTTATATGTTTTCAATGTAGAGGATGAAAGCATTTAAAC
CGTACGCCAAAAGAATTGTATGAGCATAGGATGAAGAATAAAGAAAACATGGAAACTGCTGAAATAGTGAACACGCAATAGATGAGCCAAACCAAACCCAAAAGTAAAAGAGTAAAAGTCTGGCCATGTGCATAGAACAATATGTTGAAGCCATGGAAGGTTCAGGGAAAATGGAAAAGTTATTTAAGAATCGTTGACAG
ACAAATCAATGGTAAAGACCATGTAAATGTTTGTTGAGATCCAAATCAATGGTAAAGACCATGTAAATGTTTGTTGATTTGTTGAGATCCAAATCAATGG
>TRINITY_DN41848_c0_g1_i2 from sample A7 / Example unspliced isoform:GGGGGACTGATGACAATCCTCACAGTCATCTTGACAACTAAATTTGCCAAAATTGAAAAAGACACTACCTAATGGAATCTGGAAAATATCTATGGAAGATCGCCTAAAAGTCTTAGCGCAACCCACAGATGACATGTTACAGCACTTAGATTCTTCAGTCTGGACTTTATACCGGCACGAAGTTAGCCTTTAGTTTCCTG
TTCAAATTACCATCTGTAACGTGAAAAATTAGGCAAGCGGGGTCTTGAATTGAAGAAATTGAAGAAGATCTAATCGAAAATGTACAGTGACAAACGCCCTTTCTGTAGTCTGGAAGTCTTGGGAATCTATGCCTCCTTGCTGGGTTTGCAGATTGGTTATGCAGTGAACGGTGTTCTTGTGGGGAATGAGTTATCAAAGG
GGCTGAACCCTCTGGTTCTCATTGTTTATTCCAACGGGGTTGGAGCACTAGTGCTTACACCATTTGCCCTCTTTCTTGAAAAGAGGAAGCGGCCACCAACAGTGAGTTTACCTCTGTTCGGACGGTTCTTGTTGCTGTCTATTGGAGCGTCTGCATTTCAAACGTTCTTGCTAATGGGATTGAAAGATACGTCTCCTGCC
TTTGCTTCGGCAATGCCTAACTTGGCTCCAGCAATTATATTCGTCATGGCATGGGCTTTAGGCATGGAGAAAGTGGACATTAAGTGCATTGGCAGCAGATCCAAAATTGCGGGAACTCTACTTTGTGTGTCTGGAGCAATGGCAATGAGTTTCCTACGAGGTCCCGCTCTAAGCCAAATCTGGGCTCCAATGATGCATTC
AGTTTCTGATCTTAATACAGTGCACCCAGTGGAAAACATTCTTGTTAGCTTTCTCCAGGTTGGAAATGGAGATTTAAGCAAACAGATTAGAGGGAGTATTTACCTCGTCTCAGCAGTGACTATCTTATCCACTACCTTGATACTGCAGGCAGAGACATTGAAGATGTATCCGGCCCCATTGTCACAAACATCAATTACTG
CCATTCTAGGCTCCATTCTGGCTACTGTCCTAATAATGGTTCAGGACAGAGGATTCAAGCCAACATCATGGGTACTAGATAGGAGCGGGTTTTTTACTGTAGTCAATGGAGGAATCACCTGCACTGGAGTCGGACTTGCATTACAATTGTGGTGTATGCAGAAAAGAGGACCCGTATTCGTTACAATATTCAGCCCTGTG
TCTACTGTGTTCTCGGCAATCTTATCATCTTGGTTTCTGGGAGACACAGTGTATCTGGGAAGgtaggtggttaaattttcagattttcaatggctatacaatcgtattgattgtatgcatatctgggttacagagacagctctaaatggcagatgatgccgaaatttttgcttcaatagtttttcttcttagtcccacag
attgaagtaaaaatatgatgttcatgtattgatttgatcttagttagggacctggaaagtactgtgtttagaaattcagaaaataatttaaccgaattgcttggttggcatattgtaacagTGTGATGGGTGTACTTCTTATATTCGCTGGTCTCTACCTTGTTCTGTGGGGCAAATCCTATGACAGCGTTACCCACATC
AAAATTACTTCAGAGAAAGTAGAGGAGGATCTACACACCGTAGATGAAGAACAACATCACCATCCTTCTTCTTCCCAAGTTTTGGATGTGAAAATACCTCTGCTACGCTGATCACTACCAATCTCCCAATGAGAGATTCTATATATAATTGTAAAGGCACTAACCACAAATATAGTTCTGAGGATATGTAAGACCGGGTT
GGATCTCTTGGTTTGGTTACTGGTACATAACACACTGGTTTGATCTCTTGGTTAAGGAATCATACGTGTGTGGAAGAGCTTTCTAGCTCTAAGAAACTGAGGTTCTTTCTACCTCTGTGTCACGGAGCTTCCTAGCTCTCAGAAGCTAATGCTCTTTTTGATGAGCACAATCACATAGAATTGGGTTGATATATTGTTGA
TACGTAATAATCTTCACCAGACTTTTACACAGCATTTTAACTTCTTTTTACCTTTGCAATGTTGGAAAGCATAAAACTGAAATAGCTCTAAAATCTCATCAGGAAAGTGATCAACAAATTACTAAAGGCAATGACAGAGTTTATTGAAAAATCTGTAACATGCTCATCAATTACTATCTACGGATTTATATGTTTTCAAT
GTAGAGGATGAAAGCATTTAAACCGTACGCCAAAAGAATTGTATGAGCATAGGATGAAGAATAAAGAAAACATGGAAACTGCTGAAATAGTGAACACGCAATAGATGAGCCAAACCAAACCCAAAAGTAAAAGAGTAAAAGTCTGGCCATGTGCATAGAACAATATGTTGAAGCCATGGAAGGTTCAGGGAAAATGGAAA
AGTTATTTAAGAATCGTTGACAGACAAATCAATGGTAAAGACCATGTAAATGTTTGTTGA
Intron 4 GTTGGTATTC ... CGGTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.62 | 12 | 17 | 12 |
| A2 | 54.55 | 5 | 6 | 6 |
| A3 | 38.1 | 13 | 8 | 9 |
| A4 | 52.17 | 11 | 12 | 1 |
| A5 | 78.57 | 3 | 11 | 0 |
| A6 | 50 | 21 | 21 | 2 |
| A7 | 39.58 | 29 | 19 | 0 |
| A8 | 44.68 | 26 | 21 | 1 |
| A9 | 50 | 24 | 24 | 3 |
| A10 | 46.51 | 23 | 20 | 2 |
>TRINITY_DN39697_c0_g1_i10 from sample A9 / Example spliced isoformCCCAAAACCCGGTCACCTAATAAATAATTAATAGATTATTTTAAGTAGCCTAATTTTTATTGAATAAGAATAGAGATTCAGCTTGCATTTGTCACTGATGACAATCCTCACAGTCATCTTGACAACTAAATTTGCCAAAATTGAAAAAGACACTACCTAATGGAATCTGGAAAATATCTATGGAAGATCGCCTAAAAGTC
TTAGCGCAACCCACAGATGACATGTTACAGCACTTAGATTCTTCAGTCTGGACTTTATACCGGCACGAAGTTAGCCTTTAGTTTCCTGTTCAAATTACCATCTGTAACGTGAAAAATTAGGCAAGCGGGGTCTTGAATTGAAGAAATTGAAGAAGATCTAATCGAAAATGTACAGTGACAAACGCCCTTTCTGTAGTCTG
GAAGTCTTGGGAATCTATGCCTCCTTGCTGGGTTTGCAGATTGGTTATGCAGTGAACGGTGTTCTTGTGGGGAATGAGTTATCAAAGGGGCTGAACCCTCTGGTTCTCATTGTTTATTCCAACGGGGTTGGAGCACTAGTGCTTACACCATTTGCCCTCTTTCTTGAAAAGAGGAAGCGGCCACCAACAGTGAGTTTACC
TCTGTTCGGACGGTTCTTGTTGCTGTCTATTGGAGCGTCTGCATTTCAAACGTTCTTGCTAATGGGATTGAAAGATACGTCTCCTGCCTTTGCTTCGGCAATGCCTAACTTGGCTCCAGCAATTATATTCGTCATGGCATGGGCTTTAGGGTTTCAGAAATTAAACATTCTTTAACTATGTGGATACTATTTTCCAAAGA
TTACACAGTTCTTGCAGATAAGAAGATAAAACTCAAACTCGAAACAATACTCTAGAATTAATTTAACATACAAATCATAACAAAAGAAAACCCTTCGTTGGTAAACAATTTTTTTGAGAATATATTGATTTGCAGGAATTTACAAGGCTAGTACTATGGCTCTCCCAGATATCTCCTCACGTGTATGTTTCACCTTTTAT
CTCTCAAAAGTACAGTATATTTTTGATGGAGTAAAGAATTCTTTTCTGTTAGCATCTATAGTTTTCAACTTTGTCTCTCAAAAGTATGGTATATTTTTGATGGTGGAATAAAG
>TRINITY_DN39697_c0_g1_i5 from sample A9 / Example unspliced isoform:ATGTTACAGGTGATTGATCCACTGATAATGGCTTCTTGGTTTTGGATGCTTTTCAATATTATCTTCAAAGCAAAAGCCTGTCACGCATCATATTTTTGACAATGTTGTACTTGGACTTAATTGTTATCTTCCACCGCTTCACAACTTTAAAATCATCAGTATTGCTTTATTGCAGCACTTAGATTCTTCAGTCTGGACTT
TATACCGGCACGAAGTTAGCCTTTAGTTTCCTGTTCAAATTACCATCTGTAACGTGAAAAATTAGGCAAGCGGGGTCTTGAATTGAAGAAATTGAAGAAGATCTAATCGAAAATGTACAGTGACAAACGCCCTTTCTGTAGTCTGGAAGTCTTGGGAATCTATGCCTCCTTGCTGGGTTTGCAGATTGGTTATGCAGTGA
ACGGTGTTCTTGTGGGGAATGAGTTATCAAAGGGGCTGAACCCTCTGGTTCTCATTGTTTATTCCAACGGGGTTGGAGCACTAGTGCTTACACCATTTGCCCTCTTTCTTGAAAAGAGGAAGCGGCCACCAACAGTGAGTTTACCTCTGTTCGGACGGTTCTTGTTGCTGTCTATTGGAGCGTCTGCATTTCAAACGTTC
TTGCTAATGGGATTGAAAGATACGTCTCCTGCCTTTGCTTCGGCAATGCCTAACTTGGCTCCAGCAATTATATTCGTCATGGCATGGGCTTTAGGgttggtattcgcacttctaactcatttgttccattcagtctctatatctatatattttcttatgagtttttacagatttcagaaactaaacattctgtaccttcg
gtttacagGTTTCAGAAATTAAACATTCTTTAACTATGTGGATACTATTTTCCAAAGATTACACAGTTCTTGCAGATAAGAAGATAAAACTCAAACTCGAAACAATACTCTAGAATTAATTTAACATACAAATCATAACAAAAGAAAACCCTTCGTTGGTAAACAATTTTTTTGAGAATATATTGATTTGCAGGAATTTA
CAAGGCTAGTACTATGGCTCTCCCAGATATCTCCTCACGTGTATGTTTCACCTTTTATCTCTCAAAAGTACAGTATATTTTTGATGGAGTAAAGAATTCTTTTCTGTTAGCATCTATAGTTTTCAACTTTGTCTCTCAAAAGTATGGTATATTTTTGATGGTGGAATAAAG
Intron 5 GTCTCCACGC ... TCATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.06 | 52 | 0.7 | 10.7 |
| A2 | 12.82 | 34 | 0 | 5 |
| A3 | 2.63 | 37 | 1 | 1 |
| A4 | 6 | 47 | 0 | 3 |
| A5 | 18.18 | 18 | 1.4 | 4 |
| A6 | 11.21 | 134.6 | 0 | 17 |
| A7 | 12.45 | 119.6 | 0 | 17 |
| A8 | 14.66 | 99 | 0 | 17 |
| A9 | 12.84 | 129 | 1 | 19 |
| A10 | 14.63 | 105 | 0 | 18 |
>TRINITY_DN39697_c0_g1_i8 from sample A9 / Example spliced isoformCCCAAAACCCGGTCACCTAATAAATAATTAATAGATTATTTTAAGTAGCCTAATTTTTATTGAATAAGAATAGAGATTCAGCTTGCATTTGTCACTGATGACAATCCTCACAGTCATCTTGACAACTAAATTTGCCAAAATTGAAAAAGACACTACCTAATGGAATCTGGAAAATATCTATGGAAGATCGCCTAAAAGTC
TTAGCGCAACCCACAGATGACATGTTACAGCACTTAGATTCTTCAGTCTGGACTTTATACCGGCACGAAGTTAGCCTTTAGTTTCCTGTTCAAATTACCATCTGTAACGTGAAAAATTAGGCAAGCGGGGTCTTGAATTGAAGAAATTGAAGAAGATCTAATCGAAAATGTACAGTGACAAACGCCCTTTCTGTAGTCTG
GAAGTCTTGGGAATCTATGCCTCCTTGCTGGGTTTGCAGATTGGTTATGCAGTGAACGGTGTTCTTGTGGGGAATGAGTTATCAAAGGGGCTGAACCCTCTGGTTCTCATTGTTTATTCCAACGGGGTTGGAGCACTAGTGCTTACACCATTTGCCCTCTTTCTTGAAAAGAGGAAGCGGCCACCAACAGTGAGTTTACC
TCTGTTCGGACGGTTCTTGTTGCTGTCTATTGGAGCGTCTGCATTTCAAACGTTCTTGCTAATGGGATTGAAAGATACGTCTCCTGCCTTTGCTTCGGCAATGCCTAACTTGGCTCCAGCAATTATATTCGTCATGGCATGGGCTTTAGGCATGGAGAAAGTGGACATTAAGTGCATTGGCAGCAGATCCAAAATTGCGG
GAACTCTACTTTGTGTGTCTGGAGCAATGGCAATGAGTTTCCTACGAGGTCCCGCTCTAAGCCAAATCTGGGCTCCAATGATGCATTCAGTTTCTGATCTTAATACAGTGCACCCAGTGGAAAACATTCTTGTTAGCTTTCTCCAGGTTGGAAATGGAGATTTAAGCAAACAGATTAGAGGGAGTATTTACCTCGTCTCA
GCAGTGACTATCTTATCCACTACCTTGATACTGCAGGCAGAGACATTGAAGATGTATCCGGCCCCATTGTCACAAACATCAATTACTGCCATTCTAGGCTCCATTCTGGCTACTGTCCTAATAATGGTTCAGGACAGAGGATTCAAGCCAACATCATGGGTACTAGATAGGAGCGGGTTTTTTACTGTAGTCAATGGAGG
AATCACCTGCACTGGAGTCGGACTTGCATTACAATTGTGGTGTATGCAGAAAAGAGGACCCGTATTCGTTACAATATTCAGCCCTGTGTCTACTGTGTTCTCGGCAATCTTATCATCTTGGTTTCTGGGAGACACAGTGTATCTGGGAAGTGTGATGGGTGTACTTCTTATATTCGCTGGTCTCTACCTTGTTCTGTGGG
GCAAATCCTATGACAGCGTTACCCACATCAAAATTACTTCAGAGAAAGTAGAGGAGGATCTACACACCGTAGATGAAGAACAACATCACCATCCTTCTTCTTCCCAAGTTTTGGATGTGAAAATACCTCTGCTACGCTGATCACTACCAATCTCCCGATGAGAGATGCTATATATAATTGTAAAGGCACTAACCACAAAT
ATAGTTCTGTGGATATGTAAGACCGGGTTGGATCTCTTGGTTTGGTTACTGGTACATAACACACTGGTTTGATCTCTTGGTTTGGTTACTGGTACATAACACACTGGTTTGATCTCTTGGTTAAGGAATCATACGTGTGTGGAAGAGCTTTCTAGCTCTAAGAAACTGAGGTTCTTTCTACCTCTGTGTCACGGAGCTTC
CTAGCTCTCAGAAGCTAATGCTCTTTTTGATGAGCACAATCACATAGAATTGGGTTGATATATTGTTGATACGTAATAATCTTCACCAGACTTTTACACAGCATTTTAACTTCTTTTTACCTTTGCAATGTTGGAAAGCATAAAACTGAAATAGCTCTAAAATCTCATCAGGAAAGTGATCAACAAATTACTAAAGGCAA
TGACAGAGTTTATTGAAAAATCTGTAACATGCTCATCAATTACTATCTACGGATTTATATGTTTTCAATGTAGAGGATGAAAGCATTTAAACCGTACGCCAAAAGAATTGTATGAGCATAGGATGAAGAATAAAGAAAACATGGAAACTGCTGAAATAGTGAACACGCAATAGATGAGCCAAACCAAACCCAAAAGTAAA
AGAGTAAATGTCTGGCCATGTGCATAGAACAATATGTTGAAGCCATGGAAGGTTCAGGGAAAATGGAAAAGTTATTTAAGAATCGTTGACAGACAAATCAATGGTAAAGACCATGTAAATGTTTGTTGATTTGTTGAGATCCAAATCAATGGTAAAGACCATGTAAATGTTTGTTGATTTTTTGAGTTCCATTTGTAGAA
AATGGATGTGCAGGCAGACATGAGAATTTGTTCCAACATGCATTATGACAAGGTAATTTATTTATTTCAAT
>TRINITY_DN39697_c0_g1_i7 from sample A9 / Example unspliced isoform:CCACTACCTTGATACTGCAGgtctccacgccttacttattaaattaatgtcaaataaccctttccgttattcgacctgtcatagatccccacccaagtctttgatcctataatttcatgtgcagGCAGAGACATTGAAGATGTATCCGGCCCCATTGTCACAAACATCAATTACTGCCATTCTAGGCTCCATTCTGGCTA
CTGTCCTAATAATGGTTCAGGACAGAGGATTCAAGCCAACATCATGGGTACTAGATAGGAGCGGGTTTTTTACTGTAGTCAATGGAGTAAGTCTAGATGTTGATCCTCTTTCTTATTTCTTCAACACCCCCGAATAACGTAATTTGCGAATAACAATGCAAGCCCTTGTTGCTGATTTATGAAGAATTTAATTTGGCAGG
GAATCACCTGCACTGGAGTCGGACTTGCATTACAATTGTGGTGTATGCAGAAAAGAGGACCCGTATTCGTTACAATATTCAGCCCTGTGTCTACTGTGTTCTCGGCAATCTTATCATCTTGGTTTCTGGGAGACACAGTGTATCTGGGAAGTGTGATGGGTGTACTTCTTATATTCGCTGGTCTCTACCTTGTTCTGTGG
GGCAAATCCTATGACAGCGTTACCCACATCAAAATTACTTCAGAGAAAGTAGAGGAGGATCTACACACCGTAGATGAAGAACAACATCACCATCCTTCTTCTTCCCAAGTTTTGGATGTGAAAATACCTCTGCTACGCTGATCACTACCAATCTCCCGATGAGAGATGCTATATATAATTGTAAAGGCACTAACCACAAA
TATAGTTCTGTGGATATGTAAGACCGGGTTGGATCTCTTGGTTTGGTTACTGGTACATAACACACTGGTTTGATCTCTTGGTTTGGTTACTGGTACATAACACACTGGTTTGATCTCTTGGTTAAGGAATCATACGTGTGTGGAAGAGCTTTCTAGCTCTAAGAAACTGAGGTTCTTTCTACCTCTGTGTCACGGAGCTT
CCTAGCTCTCAGAAGCTAATGCTCTTTTTGATGAGCACAATCACATAGAATTGGGTTGATATATTGTTGATACGTAATAATCTTCACCAGACTTTTACACAGCATTTTAACTTCTTTTTACCTTTGCAATGTTGGAAAGCATAAAACTGAAATAGCTCTAAAATCTCATCAGGAAAGTGATCAACAAATTACTAAAGGCA
ATGACAGAGTTTATTGAAAAATCTGTAACATGCTCATCAATTACTATCTACGGATTTATATGTTTTCAATGTAGAGGATGAAAGCATTTAAACCGTACGCCAAAAGAATTGTATGAGCATAGGATGAAGAATAAAGAAAACATGGAAACTGCTGAAATAGTGAACACGCAATAGATGAGCCAAACCAAACCCAAAAGTAA
AAGAGTAAATGTCTGGCCATGTGCATAGAACAATATGTTGAAGCCATGGAAGGTTCAGGGAAAATGGAAAAGTTATTTAAGAATCGTTGACAGACAAATCAATGGTAAAGACCATGTAAATGTTTGTTGATTTGTTGAGATCCAAATCAATGGTAAAGACCATGTAAATGTTTGTTGATTTTTTGAGTTCCATTTGTAGA
AAATGGATGTGCAGGCAGACATGAGAATTTGTTCCAACATGCATTATGACAAGGTAATTTATTTATTTCAAT
Intron 6 GTGGATCACT ... ATCTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.78 | 52 | 13 | 27 |
| A2 | 42.86 | 12 | 5 | 13 |
| A3 | 26.03 | 27 | 7 | 12 |
| A4 | 35.94 | 41 | 15 | 31 |
| A5 | 35.21 | 23 | 11 | 14 |
| A6 | 26.81 | 101 | 21 | 53 |
| A7 | 33.6 | 82 | 31 | 52 |
| A8 | 26.42 | 71 | 25 | 26 |
| A9 | 25.98 | 104 | 27 | 46 |
| A10 | 30.89 | 66 | 26 | 33 |
>TRINITY_DN109174_c0_g1_i2 from sample A2 / Example spliced isoformCACTGATAATGGCTTCTTGGTTTTGGATGCTTTTCAATATTATCTTCAAAGCAAAAGCCTGTCACGCATCATATTTTTGACAATGTTGTACTTGGACTTAATTGTTATCTTCCACCGCTTCACAACTTTAAAATCATCAGTATTGCTTTATTGCAGCACTTAGATTCTTCAGTCTGGACTTTATACCGGCACGAAGTTAG
CCTTTAGTTTCCTGTTCAAATTACCATCTGTAACGTGAAAAATTAGGCAAGCGGGGTCTTGAATTGAAGAAATTGAAGAAGATCTAATCGAAAATGTACAGTGACAAACGCCCTTTCTGTAGTCTGGAAGTCTTGGGAATCTATGCCTCCTTGCTGGGTTTGCAGATTGGTTATGCAGTGAACGGTGTTCTTGTGGGGAA
TGAGTTATCAAAGGGGCTGAACCCTCTGGTTCTCATTGTTTATTCCAACGGGGTTGGAGCACTAGTGCTTACACCATTTGCCCTCTTTCTTGAAAAGAGGAAGCGGCCACCAACAGTGAGTTTACCTCTGTTCGGACGGTTCTTGTTGCTGTCTATTGGAGCGTCTGCATTTCAAACGTTCTTGCTAATGGGATTGAAAG
ATACGTCTCCTGCCTTTGCTTCGGCAATGCCTAACTTGGCTCCAGCAATTATATTCGTCATGGCATGGGCTTTAGGCATGGAGAAAGTGGACATTAAGTGCATTGGCAGCAGATCCAAAATTGCGGGAACTCTACTTTGTGTGTCTGGAGCAATGGCAATGAGTTTCCTACGAGGTCCCGCTCTAAGCCAAATCTGGGCT
CCAATGATGCATTCAGTTTCTGATCTTAATACAGTGCACCCTGTGGAAAACATTCTTGTTAGCTTTCTCCAGGTTGGAAATGGAGATTTAAGCAAACAGATTAGAGGGAGTATTTACCTCGTCTCAGCAGTGACTATCTTATCCACTACCTTGATACTGCAGGCAGAGACATTGAAGATGTATCCGGCCCCATTGTCACA
AACATCAATTACTGCCATTCTAGGCTCCATTCTGGCTACTGTCCTAATAATGGTTCAGGACAGAGGATTCAAGCCAACATCATGGGTACTAGATAGGAGCGGGTTTTTTACTGTAGTCAATGGAGGAATCACCTGCACTGGAGTCGGACTTGCATTACAATTGTGGTGTATGCAGAAAAGAGGACCCGTATTCGTTACAA
TATTCAGCCCTGTGTCTACTGTGTTCTCGGCAATCTTATCATCTTGGTTTCTGGGAGACACAGTGTATCTGGGAAGGTAGGTGGTTAAATTTTCAGATTTTCAATGGCTA
>TRINITY_DN109174_c0_g1_i4 from sample A2 / Example unspliced isoform:CACTGATAATGGCTTCTTGGTTTTGGATGCTTTTCAATATTATCTTCAAAGCAAAAGCCTGTCACGCATCATATTTTTGACAATGTTGTACTTGGACTTAATTGTTATCTTCCACCGCTTCACAACTTTAAAATCATCAGTATTGCTTTATTGCAGCACTTAGATTCTTCAGTCTGGACTTTATACCGGCACGAAGTTAG
CCTTTAGTTTCCTGTTCAAATTACCATCTGTAACGTGAAAAATTAGGCAAGCGGGGTCTTGAATTGAAGAAATTGAAGAAGATCTAATCGAAAATGTACAGTGACAAACGCCCTTTCTGTAGTCTGGAAGTCTTGGGAATCTATGCCTCCTTGCTGGGTTTGCAGATTGGTTATGCAGTGAACGGTGTTCTTGTGGGGAA
TGAGTTATCAAAGGGGCTGAACCCTCTGGTTCTCATTGTTTATTCCAACGGGGTTGGAGCACTAGTGCTTACACCATTTGCCCTCTTTCTTGAAAAGAGGAAGCGGCCACCAACAGTGAGTTTACCTCTGTTCGGACGGTTCTTGTTGCTGTCTATTGGAGCGTCTGCATTTCAAACGTTCTTGCTAATGGGATTGAAAG
ATACGTCTCCTGCCTTTGCTTCGGCAATGCCTAACTTGGCTCCAGCAATTATATTCGTCATGGCATGGGCTTTAGGgtggatcactgtgaactgttttccttatacatttttctctaattcgtttggcaagattgaatgattagtgatttgtttatcgccaaaaccagaagttaaatgtgagtgtgatctgtgtagCATG
GAGAAAGTGGACATTAAGTGCATTGGCAGCAGATCCAAAATTGCGGGAACTCTACTTTGTGTGTCTGGAGCAATGGCAATGAGTTTCCTACGAGGTCCCGCTCTAAGCCAAATCTGGGCTCCAATGATGCATTCAGTTTCTGATCTTAATACAGTGCACCCTGTGGAAAACATTCTTGTTAGCTTTCTCCAGGTTGGAAA
TGGAGATTTAAGCAAACAGATTAGAGGGAGTATTTACCTCGTCTCAGCAGTGACTATCTTATCCACTACCTTGATACTGCAGGCAGAGACATTGAAGATGTATCCGGCCCCATTGTCACAAACATCAATTACTGCCATTCTAGGCTCCATTCTGGCTACTGTCCTAATAATGGTTCAGGACAGAGGATTCAAGCCAACAT
CATGGGTACTAGATAGGAGCGGGTTTTTTACTGTAGTCAATGGAGGAATCACCTGCACTGGAGTCGGACTTGCATTACAATTGTGGTGTATGCAGAAAAGAGGACCCGTATTCGTTACAATATTCAGCCCTGTGTCTACTGTGTTCTCGGCAATCTTATCATCTTGGTTTCTGGGAGACACAGTGTATCTGGGAAGGTAG
GTGGTTAAATTTTCAGATTTTCAATGGCTA