sp|Q8GU88|AB39G_ORYSJ ----> ABC transporter G family member 39
Intron 1 GTATGCTATA ... TTGAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.15 | 228 | 54 | 1 |
| A2 | 17.69 | 121 | 26 | 1 |
| A3 | 22.09 | 134 | 38 | 0 |
| A4 | 21.89 | 157 | 44 | 0 |
| A5 | 14.13 | 79 | 13 | 1 |
| A6 | 12.16 | 224 | 31 | 1 |
| A7 | 18.34 | 285 | 64 | 0 |
| A8 | 14.39 | 238 | 40 | 0 |
| A9 | 18.9 | 236 | 55 | 6 |
| A10 | 14.52 | 159 | 27 | 0 |
>TRINITY_DN44038_c0_g1_i5 from sample A9 / Example spliced isoformACCTTCGCTCGGATCTCGGGGTATTGTGAGCAAAATGACATTCATTCACCACAAGTAACTGTTCACGAATCCCTTATATATTCGGCATGGCTTCGTCTTGGAAGTGAAGTTGATGCAGCAACAAGGAAGTTGTTCGTGGAAGAAGTCATGGAGCTAGTGGAGTTGAATTCTTTGAGAGATTCTCTTGTTGGTCTTCCTGC
AGTAACTGGTCTGTCAACAGAACAACGGAAACGATTGACTATAGCAGTAGAACTTGTTGCCAATCCTTCCATTATATTTATGGACGAACCAACCTCAGGACTGGATGCCCGTGCTGCAGCCATAGTTATGAGAACAGTTCGAAATACAGTTGACACAGGGCGCACAGTTGTTTGCACAATCCATCAGCCCAGCATTGATA
TCTTTGAAGCCTTTGACGAGCTATTCTTGATGAAAAGAGGAGGTCAGGTTATCTATGCTGGTCCATTAGGTCGTCACTCTCATAAACTAGTTGAATACTTCGAGTCGATTGAAGGGGTGACCAAGATAACTGATGGGTACAACCCTGCAACATGGATGTTAGAGGTCTCTTCCGTGGCGGTTGAAAACCGTCTCGGAATC
GACTTTGCTGAAATTCTTCGAAATTCAGAGTTACAAAAGCGGAACAAAGCCTTGATAAAGGAATTGAGCACGCCCGCTCCTGGGGCAAAGGACCTCTACTTTCCAACGTTATATTCCCAGCCATTCTTAATACAGTGTGCCGCATGCTTCTGGAAACAAAGATTGTCTTACTGGCGTAATCCACAGTATACCGCTGTGCG
ATTCTTTTTTACATTTATTTGTGGTATTATGTTCGGTACCATCTTTTGGCGTGTCGGGAATAAGAGGACTCATCAGGCCGATATATTCAACGCAATGGGTTCAATGTTTGCGGCAGTATTATTCATCGGAGTAAACAATTCATCCTCGGTGCAACCTCTGGTCGAAATTGAAAGAACTGTATTTTACAGAGAGAAGGCTG
CCGGAATGTATTCTGCTTTACCTTACGCCTTTTCACAGGTTACCATAGAGATTCCCTACGTGTTCGCCCAAGCTGTCATTTACAGCGCTATGGTGTATTCCATGATGGCCTTTCAATGGGAGGCAGGCAAATTCTTCTGGTATCTCTTCTTTTCGTTCTTCACCTTCTTATATTTCACGTTTTACGGAATGATGAACATG
TCGTTGACGCCCAACCACAACATCTCTGCTATTGTTTCGTCGGCTTTCTATTTGATATGGAGCCTCTTCTCCGGCTTTTTGATTCCACGACCGAAAATTCCTATATGGTGGAGATGGTATTACTGGGCATGCCCCGTGGCATGGACGCTGTATGGGCTTATTGTATCGCAGTTCGGAGATCTGGAGAGTCCGATGCAACT
GGTGGATGGATCGACCCAGCCCATCAAGGTTTTCATGAAAGAGTATTTCGGGTTCCATCACGACTTTCTGGGGGCAGTAGCAGGGGCAGTAGTAGGGTTTTGCGTGCTATTTGCTTTTGTGTTTTCACTGGGCGTCAAATTCTTGAACTTCCAACATCGATAGACAGACTACACTGCACTTCAACATCTCAAGCTCATCC
GACTGCCGAGGCATGAAATGATTCGTTCAAGATCTCAAGGCCATGGAAGCGAGCTCCTTCATGTTAATGTATTTTCCAACAATAAATTTTGTTCTTCATTTATGCAAATCGATCCCAAGTCTTGTAAATTTTTTTATTGAGAAGTTCTCACGGGCTTTCGTATGGATTGAAGGTCATCATCATCCGTGAGATAGCCTGTC
TTTAAAATATCCTCTGAAGTGTTTTTTATATAAAACCATTACAATTTATTTTAAGTAGAGAAATGCCAAACATCTGTTATTCGAGAGAATTAAGATATGGTTAAAAATACTGTAATTGTAATTGAATTGAGGAGATTGATTTTAATTTAAACTACCATATCTACATCTCTTACAAATAAAAACTGTCAATAAAAATTTAC
TGAAGGC
>TRINITY_DN44038_c0_g1_i7 from sample A9 / Example unspliced isoform:ACCTTCGCTCGGATCTCGGGGTATTGTGAGCAAAATGACATTCATTCACCACAAGTAACTGTTCACGAATCCCTTATATATTCGGCATGGCTTCGTCTTGGAAGTGAAGTTGATGCAGCAACAAGGAAGTTGTTCGTGGAAGAAGTCATGGAGCTAGTGGAGTTGAATTCTTTGAGAGATTCTCTTGTTGGTCTTCCTGC
AGTAACTGGTCTGTCAACAGAACAACGGAAACGATTGACTATAGCAGTAGAACTTGTTGCCAATCCTTCCATTATATTTATGGACGAACCAACCTCAGGACTGGATGCCCGTGCTGCAGCCATAGTTATGAGAACAGTTCGAAATACAGTTGACACAGGGCGCACAGTTGTTTGCACAATCCATCAGCCCAGCATTGATA
TCTTTGAAGCCTTTGACGAGCTATTCTTGATGAAAAGAGGAGGTCAGGTTATCTATGCTGGTCCATTAGGTCGTCACTCTCATAAACTAGTTGAATACTTCGAGgtatgctatacgatggtttgaagttttcctcgtaaatagaagaggtttgggataagtaacggttttgattttaatttggaaggaaatttataattt
tatggtgatataagttatattaatgaaattaattgaagtttgagattctaagcggctttaaatttaaattcacccacaaccttttagacaaaaccttccgttacaatatttaacgaaattctgacataattccttataaaaaaatctgtttaagtgcctcctccggaattagacaaaaccttccttacaatatttaacga
aattctgacataattccttataaaaaactctgtttaagtgcctcctccggaaacagaaacagaatacgatctgacggtttacttttgaatgcagTCGATTGAAGGGGTGACCAAGATAACTGATGGGTACAACCCTGCAACATGGATGTTAGAGGTCTCTTC
Intron 2 GTAAGTGCAT ... TGCGGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.91 | 201 | 4 | 74 |
| A2 | 23.85 | 182 | 4 | 57 |
| A3 | 19.52 | 235 | 1 | 57 |
| A4 | 26.02 | 145 | 0 | 51 |
| A5 | 18.1 | 95 | 0 | 21 |
| A6 | 29.17 | 34 | 0 | 14 |
| A7 | 25.18 | 104 | 0 | 35 |
| A8 | 16.67 | 30 | 0 | 6 |
| A9 | 20.83 | 95 | 0 | 25 |
| A10 | 20.98 | 113 | 0 | 30 |
>TRINITY_DN134974_c1_g2_i5 from sample A1 / Example spliced isoformATTTATTTATAGGAAGCATCTATGAAAAAAAACATAAAAGAAGGGTCTGAACGGTTGAAAATTCAGCAAAGCATGTCAGCGCCGCCTCGTCGTCCAAGCACAAATAAATGGTCCATTCGGTGCTTCACAATTTGAGTTATACTAGAGTGCATCGCTCCTGAAACGGATAATATTAGATACTCAGTGCCTTCTCTGTATTG
ATCCGGAAAACAGATAAATTTGTACTGTATTGTATAATCTCTAGTAGAGTTCAGGAAGGGATCTGGGGTGGGCAACCATGGCAATGCCGGTTACTGATATGTTGAGGGCCGGGAGCAGGCGTAGCAACGCTTCCGGAATTTGGAGAGGGGATGATGCGTTCTCCAGATCCTCCAGAAGTAGAGATAATGAAGACGACGAA
GAGGCCTTGAAGTGGGCGGCCTTGGAGAAGTTGCCAACTTATGATCGCATCCGCAAGGGGATTCTCCACAGCGTTCTGGGCGCGCACGAGGAAGTCGATGTCGCCAAGATCGGCTTTCAAGATCGCCAGCTTCTCATCGATAGATTAGTCACAACAGCCGCCGAAGATAATGAGCGTTTTCTGCTTAAGCTCCGCAACAG
GATCGACAAAGTGGGAATCGACTTGCCCAAGATCGAAGTCCGTTACGATCACTTGAACGTGGATGCAGATGTCTATGTTGGTAGCAGATCGCTGCCTTCTGTCCCGAATTTTATGTTGAATATGCTGGAGGGGTTTTTAGGATTTCTGAAGATCTTCCCAAATAGGAAGAGACCCTTTTCAATCCTTCATGATGTTAGCG
GGATCATAAAACCGTGCAGAATGACTTTGCTTTTAGGACCGCCAGGCTCAGGGAAAACATCTTTACTCTTGGCTTTGGCTGGCAAGCTCGATTCGGAATTGAGAGTAACCGGCTCTGTGACATACAATGGGCACACACTAGATGAATTCGTGCCCCAGAGAACAGCGGCTTACATTAGCCAACATGATTTACATATTGGT
GAAATGACTGTGCGAGAAACTATGGACTTCTCTGGCCGATGCCAAGGGGTTGGAACCAGATATGATATGTTGGTTGAGCTTTCGAGAAGAGAAAAAGAAGCTGGCATCAAGCCTGATCCAGATATTGATGTTTTTATGAAGGCGATCGCTCTGGAGGGGCAAGAAACAAGCCTGGTTACGGATTACATCCTTAAGATATT
AGGGCTGGACATTTGTGCGGATACGATAGTAGGAGATGAGATGCGAAGAGGGATTTCAGGGGGTCAGAAGAAACGTGTAACCACAGGTGAGATGCTTGTTGGACCTGCCCGGGCTCTGTTCATGGACGAGATATCGACGGGGCTGGACAGCTCAACAACATTCCAAATCGTGAAATGCTTACGCCACACTGTTCATGTCT
TGGATGGGACGACTTTCATTTCTCTGCTGCAACCGGCTCCGGAAACTTATGACCTGTTCGATGATATCGTCCTGCTTTCCGAGGGTCGGGTTGTGTATCAGGGCCCCCGCGATGATGTGCTTGAATTCTTTGAATCCATGGGTTTTAGGTGCCCTGATCGCAAGGGCGTGGCAGATTTCTTGCAGGAAGTTACTTCAAAA
AAAGATCAGCAGCAATATTGGGCATTGAAAGATCAGCCGTATAGATATGTACCCGTCAAGGAATTTGCTGAATCATTTCAGTCATTTCATGTTGGACAGAAATTGGCTGCAGAGTTGTCCGTACCATATGATAAAACCAAGAGCCATCCTGCTGCGCTTACAACTTCGAGGTATGGTGTGAACAAGAAGGCACTGTTCAA
GGCCTGTTTCGCGAGGGAATTGCTCCTAATGAAGAGAAACTCCTTCGTCTACATCTTTAAGACCTCGCAGCTCTCGGTCATGGCTTTCATCACGATGACAGTGTTTTTGCGGACCAAGATGCACCGCCACTCACCAAACGATGGGAATATTTACATGGGCACTCTCTTCTTCTCGTTGATTATCTGCATGTTTAATGGGT
TTGCAGAACTTTCAATGACAATTCAAAAGCTTCCTACATTTTACAAGCAAAGAGACCTTCTCTTTTTTCCTTCCTGGGCCTACTCAATGCCAATTTGGGTGTTGAGAATTCCAATTTCACTTCTGGAGGCCGCAATATGGGTTTTCATAACTTATTATGTCGTGGGTTACGATCCTTATGTTGGAAGGCTCTTTCGCCAG
TATCTGCTGCTGGTCAGTGTCCATCAGATGGCGACTCCGCTGTTTCGATTCATTGCATCAATGGGTCGGATCATGATCGTAGCCAACACATTTGCTTCTTTTACATTGGTGATTGCTTTGCTCCTCGGTGGATTTCTTCTCTCTCGACATGACATCAGAGGCTGGTGGATTTGGGGTTACTGGATATCTCCTCTCATGTA
TGCCCAGAATGCCATCTCCGTGAATGAGTTCTTGGGTCACAAGTGGAACAAGCCTGCCATGAGCAATAGCAGCGCAAATGCAATCAAATTGAGCAATGAAACCATGGGTGTATATATTCTAAAATCTCGTGGAATATTTGCACATGGATACTGGTACTGGATTGGTGTTGCAGCTCTGCTTGGATACACTGTCTTCTTCA
ACTTTTGCTTCACTCTCGCGCTATCTTACCTCAAACCTCTCGGCAAAGCCCAGTCCGCGGTGAGTGAAGAGGTTTTGCAAGATCAGCATGCAAATAGAACAGGGGAAACGAGGACGGTTGAACTAAGCACTCGTCAAGGATCTAAAGGGAAGTCCATTGCAGAATCCACGTCCGAAGGTCGTGCTGGTGAAATTGCTAGG
AGAAGTGGTGTATCGTCTGCCGGCTCTGTGTCGGACAGATTAGGGGCAACAGCCGCTGCTACTTCCGGAAGGGCAACGAAGGGCATGGTTCTTCCATTTCAACCGCTCTCTATAGCCTTCGACGATATTTGTTACTTCGTCGACATGCCCGCCGAAATGACAGAACAAGGCGTTACAGAAACCCGGCTGCAGCTGTTAAG
AAATGTAAGTGGAGCTTTCAGACCAGGCGTTCTTACAGCGTTAGTGGGAGTTAGCGGTGCTGGAAAGACCACCATGATGGATGTTTTGGCAGGTAGGAAAACAGGTGGATACATAGAGGGAAACATCAGCATTTCTGGTTTCCCCAAAAATCAGGAAACCTTCGCTCGGATCTCGGGGTA
>TRINITY_DN134974_c1_g2_i13 from sample A1 / Example unspliced isoform:CATCCTTAAGgtaagtgcatttttgttataaataatgaaaatcttgcatctgtttgttagcggcagcctctgatggctcgagcttgcggtgcagATATTAGGGCTGGACATTTGTGCGGATACGATAGTAGGAGATGAGATGCGAAGAGGGATTTCAGGGGGTCAGAAGAAACGTGTAACCACAGGTGAGATGCTTGTTG
GACCTGCCCGGGCTCTGTTCATGGACGAGATATCGACGGGGCTGGACAGCTCAACAACATTCCAAATCGTGAAATGCTTACGCCACACTGTTCATGTCTTGGATGGGACGACTTTCATTTCTCTGCTGCAACC
Intron 3 GTAATTAGAA ... GGAATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.12 | 174 | 17 | 31 |
| A2 | 12.5 | 133 | 20 | 18 |
| A3 | 15.65 | 159 | 38 | 21 |
| A4 | 15.46 | 134 | 23 | 26 |
| A5 | 19.6 | 80 | 16 | 23 |
| A6 | 7.84 | 94 | 8 | 8 |
| A7 | 11.78 | 146 | 19 | 20 |
| A8 | 15.03 | 65 | 7 | 16 |
| A9 | 10.53 | 153 | 24 | 12 |
| A10 | 11.3 | 208 | 25 | 28 |
>TRINITY_DN112782_c1_g1_i7 from sample A5 / Example spliced isoformAAGAAATAAATATTTATTTATAGGAAGCATCTATGAAAAAAAACATAAAAGAAGGGTCTGAACGGTTGAAAATTCAGCAAAGCATGTCAGCGCCGCCTCGTCGTCCAAGCACAAATAAATGGTCCATTCGGTGCTTCACAATTTGAGTTATACTAGAGTGCATCGCTCCTGAAACGGATAATATTAGATACTCAGTGCCT
TCTCTGTATTGATCCGGAAAACAGATAAATTTGTACTGTATTGTATAATCTCTAGTAGAGTTCAGGAAGGGATCTGGGGTGGGCAACCATGGCAATGCCGGTTACTGATATGTTGAGGGCCGGGAGCAGGCGTAGCAACGCTTCCGGAATTTGGAGAGGGGATGATGCGTTCTCCAGATCCTCCAGAAGTAGAGATAATG
AAGACGACGAAGAGGCCTTGAAGTGGGCGGCCTTGGAGAAGTTGCCAACTTATGATCGCATCCGCAAGGGGATTCTCCACAGCGTTCTGGGCGAGCACGAGGAAGTCGATGTCGCCAAGATCGGCTTTCAAGATCGCCAGCTTCTCATCGATAGATTAGTCACAACAGCCGCCGAAGATAATGAGCGTTTTCTGCTTAAG
CTCCGCAACAGGATCGACAAAGTGGGAATCGACTTGCCCAAGATCGAAGTCCGTTACGATCACTTGAACGTGGATGCAGATGTCTATGTTGGTAGCAGATCGCTGCCTTCTGTCCCGAATTTTATGTTGAATATGCTGGAGGGGTTTTTAGGATTTCTGAAGATCTTCCCAAATAGGAAGAGACCCTTTTCAATCCTTCA
TGATGTTAGCGGGATCATAAAACCGTGCAGAATGACTTTGCTTTTAGGACCGCCAGGCTCAGGGAAAACATCTTTACTCTTGGCTTTGGCTGGCAAGCTCGATTCGGAATTGAGAGTAACCGGCTCTGTGACATACAATGGGCACACACTAGATGAATTCGTGCCCCAGAGAACAGCGGCTTACATTAGCCAACATGATT
TACATATTGGTGAAATGACCGTGCGAGAAACTATGGACTTCTCTGGCCGATGCCAAGGGGTTGGAACCAGATATGATATGTTGGTTGAGCTTTCGAGAAGAGAAAAAGAAGCTGGCATCAAGCCTGATCCAGATATTGATGTTTTTATGAAGGCGATCGCTCTGGAGGGGCAAGAAACAAGCCTGGTTACGGATTACATC
CTTAAGATATTAGGGCTGGACATTTGTGCGGATACGATAGTAGGAGATGAGATGCGAAGAGGGATTTCAGGGGGTCAGAAGAAACGTGTAACCACAGGTGAGATGCTTGTTGGACCTGCCCGGGCTCTGTTCATGGACGAGATATCGACGGGGCTGGACAGCTCAACAACATTCCAAATCGTGAAATGCTTACGCCACAC
TGTTCATGTCTTGGATGGGACGACTTTCATTTCTCTGCTGCAACCGGCTCCGGAAACTTATGACCTGTTCGATGATATCGTCCTGCTTTCCGAGGGTCGGGTTGTGTATCAGGGCCCCCGCGATGATGTGCTTGAATTCTTTGAATCCATGGGTTTTAGGTGCCCTGATCGCAAGGGCGTGGCAGATTTCTTGCAGGAAG
TTACTTCAAAAAAAGATCAGCAGCAATATTGGGCATTGAAAGATCAGCCGTATAGATATGTACCCGTCAAGGAATTTGCTGAATCATTTCAGTCATTTCATGTTGGACAGAAATTGGCTGCAGAGTTGTCCGTACCATATGATAAAACCAAGAGCCATCCTGCTGCGCTTACAACTTCGAGGTATGGTGTGAACAAGAAG
GCACTGTTCAAGGCCTGTTTCGCGAGGGAATTGCTCCTAATGAAGAGAAACTCCTTCGTCTACATCTTTAAGACCTCGCAGCTCTCGGTCATGGCTTTCATCACGATGACAGTGTTTTTGCGGACCAAGATGCACCGCCACTCACCAAACGATGGGAATATTTACATGGGCACTCTCTTCTTCTCGTTGATTATCTGCAT
GTTTAATGGGTTTGCAGAACTTTCAATGACAATTCAAAAGCTTCCTACATTTTACAAGCAAAGAGACCTTCTCTTTTTTCCTTCCTGGGCCTACTCAATGCCAATTTGGGTGTTGAGAATTCCAATTTCACTTCTGGAGGCCGCAATATGGGTTTTCATAACTTATTATGTCGTGGGTTACGATCCTTATGTTGGAAGGC
TCTTTCGCCAGTATCTGCTGCTGGTCAGTGTCCATCAGATGGCGACTCCGCTGTTTCGATTCATTGCATCAATGGGTCGGATCATGATCGTAGCCAACACATTTGCTTCTTTTACATTGGTGATTGCTTTGCTCCTCGGTGGATTTCTTCTCTCTCGACATGACATCAGAGGCTGGTGGATTTGGGGTTACTGGATATCT
CCTCTCATGTATGCCCAGAATGCCATCTCCGTCAACGAGTTCTTGGGTCACAAGTGGAACAAGCCTGCCATGAGCAATAGCAGCGCAAATGCAATCTTATTGAGCAATGAAACCATGGGTGTATATATTCTAAAATCGCGCGGGCTATTTGCACATGGATACTGGTACTGGATTGGTGTTGTAGCTCTGCTTGGATACAC
GGTCCTCTTCAACTTTTGCTTCACTCTCGCGCTTTCTTACCTCAAACCTCTAGGCAAAGCCCAGGCCGCGGTGACTGAAGAGGCTTTGCAAGATCAGCAAGCAAATAGAACAGGGGAAACGAGGACGGTTGAACTGAGCACTCGTCAAGGCTCTAAAGGGAAGTCCATTGCAGAATCTACGTCCGAAGGGCGTGCTGGTG
AAATTACTTTAGGGGCAACAGCCAATGCTACTTCCGGAGGGGCAACGAAGGGGATGGTTCTTCCATTTCAACCGCTCTCTATAGCCTTCGACGATATTTGTTACTTCGTCGACATGCCCGCCGAAATGACAGAACAAGGCGTTACAGAAACCCGGCTGCAGCTGTTAAGAAATGTAAGTGGAGCTTTCAGACCAGGCGTT
CTTACAGCGTTAGTGGGAGTTAGCGGTGCTGGAAAGACCACCATGATGGATGTTTTGGCAGGTAGGAAAACAGGTGGATACATAGAGGGAAACATCAGCATTTCTGGTTTTCCCAAAAATCAGGAAACCTTCGCTCGGATCTCGGGGTACTGTGAACAAAACGACATTCATTCACCACAAGTAACTGTTCACGAATCCCT
TATATATTCGGCATGGCTTCGTCTGGGAAGTGATGTTGATGCAGAGAGAAGGAAGATGTTCGTGGAACAAGTAATGGAGCTGGTGGAGTTGACTTCTTTGAGAGATTCTCTTGTTGGTCTTCCTGCAGTAACTGGTCTGTCAACAGAACAACGGAAACGATTGACTATAGCAGTAGAACTTGTTGCCAATCCTTCCATTA
TATTTATGGACGAACCAACCTCAGGACTGGATGCCCGTGCTGCAGCCATAGTTATGAGAACAGTTCGAAATACCGTTGACACAGGGCGCACAGTTGTTTGCACAATCCATCAGCCCAGCATTGATATCTTTGAAGCCTTTGACGAGCTATTCTTGATGAAAAGAGGAGGTCAGGTTATCTATGCAGGTCCATTAGGTCGT
CACTCTCATAAACTAGTTGAATACTTCGAGTCGATTGAAGGGGTGACCAAGATAACTGATGGGTACAACCCTGCAACATGGATGTTAGAGGTCTCTTCCGTGGCGGTTGAAAACCGTCTCGGAATCGACTTTGCTGAAATTCTTCGAAATTCAGAGTTACAAAAGCGGAACAAAGCCTTGATAAAGGAATTGAGCACGCC
CGCTCCTGGGGCAAAGGACCTCTACTTTCCAACGTTATATTCCCAGCCATTCTTAATACAGTGTGCCGCATGCTTCTGGAAACAAAGATTGTCTTACTGGCGTAATCCACAGTATACCGCTGTGCGGTTGCTTTTTACATTTGTCTGTGGCTTATTGCTCGGTACCATCTTTTGGCGTGTCGGGAATAAGAGGACTCATC
AGGCCGATATATTCAACGCAATGGGTTCAATGTTTGCGGCAGTATTATTCATCGGAGTAAACAATTCATCCTCGGTGCAACCTCTGGTCGAAATTGAAAGAACTGTATTTTACAGAGAGAAGGCTGCCGGAATGTATTCTGCTTTACCTTACGCCTTTTCACAGGTTACCATAGAGATTCCCTACGTGTTCGCCCAAGCT
GTCATTTACAGCGCTATGGTGTATTCCATGATGGCCTTTCAATGGGAGGCAGGCAAATTCTTCTGGTATCTCTTCTTTTCGTTCTTCACCTTCTTATATTTCACGTTTTACGGAATGATGAACATGTCGTTGACGCCCAACCACAACATCTCTGCTATTGTTTCGTCGGCTTTCTATTTGATATGGAGCCTCTTCTCCGG
CTTTTTGATTCCACGACCGAAAATTCCTATATGGTGGAGATGGTATTACTGGGCATGCCCCGTGGCATGGACGCTGTATGGGCTTATTGTATCGCAGTTCGGAGATCTGGAGAGTCCGATGCAACTGGTGGATGGATCGACCCAGCCCATCAAGGTTTTCATGAAAGAGTATTTCGGGTTCCATCACGACTTTCTGGGGG
CAGTAGCAGGGGCAGTAGTAGGGTTTTGCGTGCTATTTGGTTTTGTATTTTCACTGGGCGTCAAATTCTTGAACTTCCAACATCGATAGACGGACTACAGTTACACTGCACTTCAACATCTCAAGCTCATCCGACTGCCCAGGCATGAAATACTTCATTCAAGATCCCATGGCCATGGAAGCGAAATCCTTCATGTTAAT
GCATTTTCCAACAATTTGTTCTTTTTTTCGCCTGTAAAAATTTTGATGGAGAAGCTCACGAGCTCTCATTTATGCAAACCCATCCCGAGTATTTTCTTCTGTAAAATTTGTATTCTATATATCTTAAATGAGAAGCTCTCACGGGCTTTCGTCACTTCGTTCCAACTGTGTATGGATGGAAGGTCTTGATCATCGGTGAG
AGAGCCTGTCTTTAAAATATCGTCTGAAACATTGTTTTAC
>TRINITY_DN112782_c1_g1_i11 from sample A5 / Example unspliced isoform:AAGAAATAAATATTTATTTATAGGAAGCATCTATGAAAAAAAACATAAAAGAAGGGTCTGAACGGTTGAAAATTCAGCAAAGCATGTCAGCGCCGCCTCGTCGTCCAAGCACAAATAAATGGTCCATTCGGTGCTTCACAATTTGAGTTATACTAGAGTGCATCGCTCCTGAAACGGATAATATTAGATACTCAGTGCCT
TCTCTGTATTGATCCGGAAAACAGATAAATTTGTACTGTATTGTATAATCTCTAGTAGAGTTCAGGAAGGGATCTGGGGTGGGCAACCATGGCAATGCCGGTTACTGATATGTTGAGGGCCGGGAGCAGGCGTAGCAACGCTTCCGGAATTTGGAGAGGGGATGATGCGTTCTCCAGATCCTCCAGAAGTAGAGATAATG
AAGACGACGAAGAGGCCTTGAAGTGGGCGGCCTTGGAGAAGTTGCCAACTTATGATCGCATCCGCAAGGGGATTCTCCACAGCGTTCTGGGCGAGCACGAGGAAGTCGATGTCGCCAAGATCGGCTTTCAAGATCGCCAGCTTCTCATCGATAGATTAGTCACAACAGCCGCCGAAGATAATGAGCGTTTTCTGCTTAAG
CTCCGCAACAGGATCGACAAAGTGGGAATCGACTTGCCCAAGATCGAAGTCCGTTACGATCACTTGAACGTGGATGCAGATGTCTATGTTGGTAGCAGATCGCTGCCTTCTGTCCCGAATTTTATGTTGAATATGCTGGAGGGGTTTTTAGGATTTCTGAAGATCTTCCCAAATAGGAAGAGACCCTTTTCAATCCTTCA
TGATGTTAGCGGGATCATAAAACCGTGCAGAATGACTTTGCTTTTAGGACCGCCAGGCTCAGGGAAAACATCTTTACTCTTGGCTTTGGCTGGCAAGCTCGATTCGGAATTGAGAGTAACCGGCTCTGTGACATACAATGGGCACACACTAGATGAATTCGTGCCCCAGAGAACAGCGGCTTACATTAGCCAACATGATT
TACATATTGGTGAAATGACCGTGCGAGAAACTATGGACTTCTCTGGCCGATGCCAAGGGGTTGGAACCAGATATGATATGTTGGTTGAGCTTTCGAGAAGAGAAAAAGAAGCTGGCATCAAGCCTGATCCAGATATTGATGTTTTTATGAAGGCGATCGCTCTGGAGGGGCAAGAAACAAGCCTGGTTACGGATTACATC
CTTAAGATATTAGGGCTGGACATTTGTGCGGATACGATAGTAGGAGATGAGATGCGAAGAGGGATTTCAGGGGGTCAGAAGAAACGTGTAACCACAGGTGAGATGCTTGTTGGACCTGCCCGGGCTCTGTTCATGGACGAGATATCGACGGGGCTGGACAGCTCAACAACATTCCAAATCGTGAAATGCTTACGCCACAC
TGTTCATGTCTTGGATGGGACGACTTTCATTTCTCTGCTGCAACCGGCTCCGGAAACTTATGACCTGTTCGATGATATCGTCCTGCTTTCCGAGGGTCGGGTTGTGTATCAGGGCCCCCGCGATGATGTGCTTGAATTCTTTGAATCCATGGGTTTTAGGTGCCCTGATCGCAAGGGCGTGGCAGATTTCTTGCAGGAAG
TTACTTCAAAAAAAGATCAGCAGCAATATTGGGCATTGAAAGATCAGCCGTATAGATATGTACCCGTCAAGGAATTTGCTGAATCATTTCAGTCATTTCATGTTGGACAGAAATTGGCTGCAGAGTTGTCCGTACCATATGATAAAACCAAGAGCCATCCTGCTGCGCTTACAACTTCGAGGTATGGTGTGAACAAGAAG
GCACTGTTCAAGGCCTGTTTCGCGAGGGAATTGCTCCTAATGAAGAGAAACTCCTTCGTCTACATCTTTAAGACCTCGCAGCTCTCGGTCATGGCTTTCATCACGATGACAGTGTTTTTGCGGACCAAGATGCACCGCCACTCACCAAACGATGGGAATATTTACATGGGCACTCTCTTCTTCTCGTTGATTATCTGCAT
GTTTAATGGGTTTGCAGAACTTTCAATGACAATTCAAAAGCTTCCTACATTTTACAAGCAAAGAGACCTTCTCTTTTTTCCTTCCTGGGCCTACTCAATGCCAATTTGGGTGTTGAGAATTCCAATTTCACTTCTGGAGGCCGCAATATGGGTTTTCATAACTTATTATGTCGTGGGTTACGATCCTTATGTTGGAAGGC
TCTTTCGCCAGTATCTGCTGCTGGTCTGTGTCCATCAGATGGCCACTGCACTGTTTCGATTCATTGCATCATTGGGTCGGAGCATGATCGTAGCCAACACATTTGGTTCTTTTGCATTGGTGATTATTTTGCTCCTCGGTGGATTTCTTCTCTCTCGACATGACATCAGAGGCTGGTGGATTTGGGGTTACTGGATATCT
CCTCTCATGTATGCCCAGAATGCCATCTCCGTGAATGAGTTCTTGGGTCACAAGTGGAACAAGgtaattagaattttttttaatctcattttaagattgatttattaaaaagttgatgtatacttttcaaatcactgagaacttttatgtggaatggcagCCTGCCATGAGCAATAGCAGCGCAAATGCAATCTTATTGA
GCAATGAAACCATGGGTGTATATATTCTAAAATCGCGCGGGCTATTTGCACATGGATACTGGTACTGGATTGGTGTTGTAGCTCTGCTTGGATACACGGTCCTCTTCAACTTTTGCTTCACTCTCGCGCTTTCTTACCTCAAACCTCTAGGCAAAGCCCAGGCCGCGGTGACTGAAGAGGCTTTGCAAGATCAGCAAGCA
AATAGAACAGGGGAAACGAGGACGGTTGAACTGAGCACTCGTCAAGGCTCTAAAGGGAAGTCCATTGCAGAATCTACGTCCGAAGGGCGTGCTGGTGAAATTACTTTAGGGGCAACAGCCAATGCTACTTCCGGAGGGGCAACGAAGGGGATGGTTCTTCCATTTCAACCGCTCTCTATAGCCTTCGACGATATTTGTTA
CTTCGTCGACATGCCCGCCGAAATGACAGAACAAGGCGTTACAGAAACCCGGCTGCAGCTGTTAAGAAATGTAAGTGGAGCTTTCAGACCAGGCGTTCTTACAGCGTTAGTGGGAGTTAGCGGTGCTGGAAAGACCACCATGATGGATGTTTTGGCAGGTAGGAAAACAGGTGGATACATAGAGGGAAACATCAGCATTT
CTGGTTTTCCCAAAAATCAGGAAACCTTCGCTCGGATCTCGGGGTACTGTGAACAAAACGACATTCATTCACCACAAGTAACTGTTCACGAATCCCTTATATATTCGGCATGGCTTCGTCTGGGAAGTGATGTTGATGCAGAGAGAAGGAAGATGTTCGTGGAACAAGTAATGGAGCTGGTGGAGTTGACTTCTTTGAGA
GATTCTCTTGTTGGTCTTCCTGCAGTAACTGGTCTGTCAACAGAACAACGGAAACGATTGACTATAGCAGTAGAACTTGTTGCCAATCCTTCCATTATATTTATGGACGAACCAACCTCAGGACTGGATGCCCGTGCTGCAGCCATAGTTATGAGAACAGTTCGAAATACCGTTGACACAGGGCGCACAGTTGTTTGCAC
AATCCATCAGCCCAGCATTGATATCTTTGAAGCCTTTGACGAGCTATTCTTGATGAAAAGAGGAGGTCAGGTTATCTATGCAGGTCCATTAGGTCGTCACTCTCATAAACTAGTTGAATACTTCGAGTCGATTGAAGGGGTGACCAAGATAACTGATGGGTACAACCCTGCAACATGGATGTTAGAGGTCTCTTCCGTGG
CGGTTGAAAACCGTCTCGGAATCGACTTTGCTGAAATTCTTCGAAATTCAGAGTTACAAAAGCGGAACAAAGCCTTGATAAAGGAATTGAGCACGCCCGCTCCTGGGGCAAAGGACCTCTACTTTCCAACGTTATATTCCCAGCCATTCTTAATACAGTGTGCCGCATGCTTCTGGAAACAAAGATTGTCTTACTGGCGT
AATCCACAGTATACCGCTGTGCGGTTGCTTTTTACATTTGTCTGTGGCTTATTGCTCGGTACCATCTTTTGGCGTGTCGGGAATAAGAGGACTCATCAGGCCGATATATTCAACGCAATGGGTTCAATGTTTGCGGCAGTATTATTCATCGGAGTAAACAATTCATCCTCGGTGCAACCTCTGGTCGAAATTGAAAGAAC
TGTATTTTACAGAGAGAAGGCTGCCGGAATGTATTCTGCTTTACCTTACGCCTTTTCACAGGTTACCATAGAGATTCCCTACGTGTTCGCCCAAGCTGTCATTTACAGCGCTATGGTGTATTCCATGATGGCCTTTCAATGGGAGGCAGGCAAATTCTTCTGGTATCTCTTCTTTTCGTTCTTCACCTTCTTATATTTCA
CGTTTTACGGAATGATGAACATGTCGTTGACGCCCAACCACAACATCTCTGCTATTGTTTCGTCGGCTTTCTATTTGATATGGAGCCTCTTCTCCGGCTTTTTGATTCCACGACCGAAAATTCCTATATGGTGGAGATGGTATTACTGGGCATGCCCCGTGGCATGGACGCTGTATGGGCTTATTGTATCGCAGTTCGGA
GATCTGGAGAGTCCGATGCAACTGGTGGATGGATCGACCCAGCCCATCAAGGTTTTCATGAAAGAGTATTTCGGGTTCCATCACGACTTTCTGGGGGCAGTAGCAGGGGCAGTAGTAGGGTTTTGCGTGCTATTTG
Intron 4 GTAACATTCT ... GGTGTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.58 | 103 | 17 | 30 |
| A2 | 18.68 | 74 | 12 | 22 |
| A3 | 15.51 | 79 | 6 | 23 |
| A4 | 21.81 | 95 | 32 | 21 |
| A5 | 26.73 | 37 | 17 | 10 |
| A6 | 18.52 | 462 | 90 | 120 |
| A7 | 18.02 | 339 | 59 | 90 |
| A8 | 18.98 | 476 | 76 | 147 |
| A9 | 18.49 | 377 | 61 | 110 |
| A10 | 17.72 | 202 | 38 | 49 |
>TRINITY_DN45618_c1_g1_i2 from sample A8 / Example spliced isoformCTGTCAACAGAACAACGGAAACGATTGACTATAGCAGTAGAACTTGTTGCCAATCCTTCCATTATATTTATGGACGAACCAACCTCAGGACTGGATGCTCGTGCTGCAGCCATAGTTATGAGAACAGTTCGAAATACAGTTGACACAGGGCGCACAGTTGTTTGCACAATCCATCAGCCTAGCATTGATATCTTTGAAGC
CTTCGACGAGCTATTCTTGATGAAAAGAGGAGGTCAGGTTATCTATGCTGGTCCATTAGGTCGTCACTCTCATAAACTAGTTGAATACTTCGAGTCGATTGAAGGGGTGACCAAGATAACTGATGGGTACAACCCTGCAACATGGATGTTAGAGGTCTCTTCCGTGGCGGTTGAAAACCGTCTCGGAATCGACTTTGCTG
AAATTCTTCGAAATTCAGAGTTACAAAAGCGGAACAAAGCCTTGATAAAGGAATTGAGCACGCCCGCTCCTGGGGCAAAGGACCTCTACTTTCCAACGTTATATTCCCAGCCATTCTTAATACAGTGTGCCGCATGCTTCTGGAAACAAAGATTGTCTTACTGGCGTAATCCACAGTATACCGCTGTGCGGTTGCTTTTT
ACATTTGTCTGTGGCTTATTGCTCGGTACCATCTTTTGGCGTGTCGGGAATAAGAGGACTCATCAGGCCGATATATTCAACGCAATGGGTTCAATGTTTGCGGCAGTATTATTCATCGGAGTAAACAATTCATCCTCGGTGCAACCTCTGGTCGAAATTGAAAGAACTGTATTTTACAGAGAGAAGGCTGCCGGAATGTA
TTCTGCTTTACCTTACGCCTTTTCACAGGTTACCATAGAGATTCCCTACGTGTTCGCCCAAGCTGTCATTTACAGCGCTATGGTGTATTCCATGATGGCCTTTCAATGGGAGGCAGGCAAATTCTTCTGGTATCTCTTCTTTTCGTTCTTCACCTTCTTATATTTCACGTTTTACGGAATGATGAACATGTCGTTGACGC
CCAACCACAACATCTCTGCTATTGTTTCGTCGGCTTTCTATTTGATATGGAGCCTCTTCTCCGGCTTTTTGATTCCACGACCGAAAATTCCTATATGGTGGAGATGGTATTACTGGGCATGCCCCGTGGCATGGACGCTGTATGGGCTTATTGTATCGCAGTTCGGAGATCTGGAGAGTCCGATGCAACTGGTGGATGGA
TCGACCCAGCCCATCAAGGTTTTCATGAAAGAGTATTTCGGGTTCCATCACGACTTTCTGGGGGCAGTAGCAGGGGCAGTAGTAGGGTTTTGCGTGCTATTTGCTTTTGTGTTTTCACTGGGCGTCAAATTCTTGAACTTCCAACATCGATAGACAGACTACACTGCACTTCAACATCTCAAGCTCATCCGACTGCCGAG
GCATGAAATGATTCGTTCAAGATCTCAAGGCCATGGAAGCGAGCTCCTTCATGTTAATGTATTTTCCAACAATAAATTTTGTTCTTCATTTATGCAAATCGATCCCAAGTCTTGTAAATTTTTTTATTGAGAAGTTCTCACGGGCTTTCGTATGGATTGAAGGTCATCATCATCCGTGAGATAGCCTGTCTTTAAAATAT
CCTCTGAAGTGTTTTTTATATAAAACCATTACAATTTATTTTAAGTAGAGAAATGCCAAACATCTGTTATTCGAGAGAATTAAGATATGGTTAAAAATACTGTAATTGTAATTGAATTGAGATTGAATTGAGGAGA
>TRINITY_DN45618_c1_g1_i3 from sample A8 / Example unspliced isoform:CTGTCAACAGAACAACGGAAACGATTGACTATAGCAGTAGAACTTGTTGCCAATCCTTCCATTATATTTATGGACGAACCAACCTCAGGACTGGATGCTCGTGCTGCAGCCATAGTTATGAGAACAGTTCGAAATACAGTTGACACAGGGCGCACAGTTGTTTGCACAATCCATCAGCCTAGCATTGATATCTTTGAAGC
CTTCGACGAGCTATTCTTGATGAAAAGAGGAGGTCAGGTTATCTATGCTGGTCCATTAGGTCGTCACTCTCATAAACTAGTTGAATACTTCGAGTCGATTGAAGGGGTGACCAAGATAACTGATGGGTACAACCCTGCAACATGGATGTTAGAGGTCTCTTCCGTGGCGGTTGAAAACCGTCTCGGAATCGACTTTGCTG
AAATTCTTCGAAATTCAGAGTTACAAAAGCGGAACAAAGCCTTGATAAAGGAATTGAGCACGCCCGCTCCTGGGGCAAAGGACCTCTACTTTCCAACGTTATATTCCCAGCCATTCTTAATACAGTGTGCCGCATGCTTCTGGAAACAAAGATTGTCTTACTGGCGTAATCCACAGTATACCGCTGTGCGGTTGCTTTTT
ACATTTGTCTGTGGCTTATTGCTCGGTACCATCTTTTGGCGTGTCGGGAATAAGAGGACTCATCAGGCCGATATATTCAACGCAATGGGTTCAATGTTTGCGGCAGTATTATTCATCGGAGTAAACAATTCATCCTCGGTGCAACCTCTGGTCGAAATTGAAAGAACTGTATTTTACAGAGAGAAGGCTGCCGGAATGTA
TTCTGCTTTACCTTACGCCTTTTCACAGGTTACCATAGAGATTCCCTACGTGTTCGCCCAAGCTGTCATTTACAGCGCTATGGTGTATTCCATGATGGCCTTTCAATGGGAGGCAGGCAAATTCTTCTGGTATCTCTTCTTTTCGTTCTTCACCTTCTTATATTTCACGTTTTACGGAATGATGAACATGTCGTTGACGC
CCAACCACAACATCTCTGCTATTGTTTCGTCGGCTTTCTATTTGATATGGAGCCTCTTCTCCGGCTTTTTGATTCCACGACCGgtaacattctctttcctgctaatagaatagaatagaatttttggatggaatatggaagattggtaatatctgaagaaagttattcatatgttttgatgtttgtgggtgtggcagAAA
ATTCCTATATGGTGGAGATGGTATTACTGGGCATGCCCCGTGGCATGGACGCTGTATGGGCTTATTGTATCGCAGTTCGGAGATCTGGAGAGTCCGATGCAACTGGTGGATGGATCGACCCAGCCCATCAAGGTTTTCATGAAAGAGTATTTCGGGTTCCATCACGACTTTCTGGGGGCAGTAGCAGGGGCAGTAGTAGG
GTTTTGCGTGCTATTTGCTTTTGTGTTTTCACTGGGCGTCAAATTCTTGAACTTCCAACATCGATAGACAGACTACACTGCACTTCAACATCTCAAGCTCATCCGACTGCCGAGGCATGAAATGATTCGTTCAAGATCTCAAGGCCATGGAAGCGAGCTCCTTCATGTTAATGTATTTTCCAACAATAAATTTTGTTCTT
CATTTATGCAAATCGATCCCAAGTCTTGTAAATTTTTTTATTGAGAAGTTCTCACGGGCTTTCGTATGGATTGAAGGTCATCATCATCCGTGAGATAGCCTGTCTTTAAAATATCCTCTGAAGTGTTTTTTATATAAAACCATTACAATTTATTTTAAGTAGAGAAATGCCAAACATCTGTTATTCGAGAGAATTAAGAT
ATGGTTAAAAATACTGTAATTGTAATTGAATTGAGATTGAATTGAGGAGA
Intron 5 GTCAGTACCA ... GATGGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.38 | 183 | 26 | 69 |
| A2 | 25.15 | 125 | 12 | 42 |
| A3 | 27.23 | 139 | 18 | 52 |
| A4 | 30.37 | 149 | 22 | 65 |
| A5 | 37.84 | 69 | 7 | 42 |
| A6 | 33.44 | 434 | 44 | 218 |
| A7 | 33.71 | 348 | 30 | 177 |
| A8 | 31.91 | 382 | 35 | 179 |
| A9 | 31.1 | 339 | 36 | 153 |
| A10 | 34.76 | 214 | 22 | 114 |
>TRINITY_DN123560_c2_g2_i16 from sample A3 / Example spliced isoformGAACGGTTGAAAATTCAGCAAAGCATGTCAGCGCCGCCTCGTCGTCCAAGCACAAATAAATGGTCCATTCGGTGCTTCACAATTTGAGTTATACTAGAGTGCATCGCTCCTGAAACGGATAATATTAGATACTCAGTGCCTTCTCTGTATTGATCCGGAAAACAGATAAATTTGTACTGTATTGTATAATCTCTAGTAGA
GTTCAGGAAGGGATCTGGGGTGGGCAACCATGGCAATGCCGGTTACTGATATGTTGAGGGCCGGGAGCAGGCGTAGCAACGCTTCCGGAATTTGGAGAGGGGATGATGCGTTCTCCAGATCCTCCAGAAGTAGAGATAATGAAGACGACGAAGAGGCCTTGAAGTGGGCGGCCTTGGAGAAGTTGCCAACTTATGATCGC
ATCCGCAAGGGGATTCTCCACAGCGTTCTGGGCGCGCACGAGGAAGTCGATGTCGCCAAGATCGGCTTTCAAGATCGCCAGCTTCTCATCGATAGATTAGTCACAACAGCCGCCGAAGATAATGAGCGTTTTCTGCTTAAGCTCCGCAACAGGATCGACAAAGTGGGAATCGACTTGCCCAAGATCGAAGTCCGTTACGA
TCACTTGAACGTGGATGCAGATGTCTATGTTGGTAGCAGATCGCTGCCTTCTGTCCCGAATTTTATGTTGAATATGCTGGAGGGGTTTTTAGGATTTCTGAAGATCTTCCCAAATAGGAAGAGACCCTTTTCAATCCTTCATGATGTTAGCGGGATCATAAAACCGTGCAGAATGACTTTGCTTTTAGGACCGCCAGGCT
CAGGGAAAACATCTTTACTCTTGGCTTTGGCTGGCAAGCTCGATTCGGAATTGAGAGTAACCGGCTCTGTGACATACAATGGGCACACACTAGATGAATTCGTGCCCCAGAGAACAGCGGCTTACATTAGCCAACATGATTTACATATTGGTGAAATGACCGTGCGAGAAACTATGGACTTCTCTGGCCGATGCCAAGGG
GTTGGAACCAGATATGATATGTTGGTTGAGCTTTCGAGAAGAGAAAAAGAAGCTGGCATCAAGCCTGATCCAGATATTGATGTTTTTATGAAGGCGATCGCTCTGGAGGGGCAAGAAACAAGCCTGGTTACGGATTACATCCTTAAGATATTAGGGCTGGACATTTGTGCGGATACGATAGTAGGAGATGAGATGCGAAG
AGGGATTTCAGGGGGTCAGAAGAAACGTGTAACCACAGGTGAGATGCTTGTTGGACCTGCCCGGGCTCTGTTCATGGACGAGATATCGACGGGGCTGGACAGCTCAACAACATTCCAAATCGTGAAATGCTTACGCCACACTGTTCATGTCTTGGATGGGACGACTTTCATTTCTCTGCTGCAACCGGCTCCGGAAACTT
ATGACCTGTTCGATGATATCGTCCTGCTTTCCGAGGGTCGGGTTGTGTATCAGGGCCCCCGCGATGATGTGCTTGAATTCTTTGAATCCATGGGTTTTAGGTGCCCTGATCGCAAGGGCGTGGCAGATTTCTTGCAGGAAGTTACTTCAAAAAAAGATCAGCAGCAATATTGGGCATTGAAAGATCAGCCGTATAGATAT
GTACCCGTCAAGGAATTTGCTGAATCATTTCAGTCATTTCATGTTGGACAGAAATTGGCTGCAGAGTTGTCCGTACCATATGATAAAACCAAGAGCCATCCTGCTGCGCTTACAACTTCGAGGTATGGTGTGAACAAGAAGGCACTGTTCAAGGCCTGTTTCGCGAGGGAATTGCTCCTAATGAAGAGAAACTCCTTCGT
CTACATCTTTAAGACCTCGCAGCTCTCGGTCATGGCTTTCATCACGATGACAGTGTTTTTGCGGACCAAGATGCACCGCCACTCACCAAACGATGGGAATATTTACATGGGCACTCTCTTCTTCTCGTTGATTATCTGCATGTTTAATGGGTTTGCAGAACTTTCAATGACAATTCAAAAGCTTCCTACATTTTACAAGC
AAAGAGACCTTCTCTTTTTTCCTTCCTGGGCCTACTCAATGCCAATTTGGGTGTTGAGAATTCCAATTTCACTTCTGGAGGCCGCAATATGGGTTTTCATAACTTATTATGTCGTGGGTTACGATCCTTATGTTGGAAGGCTCTTTCGCCAGTATCTGCTGCTGGTCAGTGTCCATCAGATGGCGACTCCGCTGTTTCGA
TTCATTGCATCAATGGGTCGGATCATGATCGTAGCCAACACATTTGCTTCTTTTACATTGGTGATTGCTTTGCTCCTCGGTGGATTTCTTCTCTCTCGACATGACATCAGAGGCTGGTGGATTTGGGGTTACTGGATATCTCCTCTCATGTATGCCCAGAATGCCATCTCCGTCAACGAGTTCTTGGGTCACAAGTGGAA
CAAGCCTGCCATGAGCAATAGCAGCGCAAATGCAATCTTATTGAGCAATGAAACCATGGGTGTATATATTCTAAAATCGCGCGGGCTATTTGCACATGGATACTGGTACTGGATTGGTGTTGTAGCTCTGCTTGGATACACGGTCCTCTTCAACTTCTGCTTCACTCTCGCGCTTTCTTACCTCAAACCTCTAGGCAAAG
CCCAGGCCGCGGTGACTGAAGAGGCTTTGCAAGATCAGCAAGCAAATAGAACAGGGGAAACGAGGACGGTTGAACTGAGCACTCGTCAAGGCTCTAAAGGGAAGTCCATTGCAGAATCTACGTCCGAAGGGCGTGCTGGTGAAATTACTTTAGGGGCAACAGCCAATGCTACTTCCGGAGGGGCAACGAAGGGGATGGTT
CTTCCATTTCAACCGCTCTCTATAGCCTTCGACGATATTTGTTACTTCGTCGACATGCCCGCCGAAATGACAGAACAAGGCGTTACAGAAACCCGGCTGCAGCTGTTAAGAAATGTAAGTGGAGCTTTCAGACCAGGCGTTCTTACAGCGTTAGTGGGAGTTAGCGGTGCTGGAAAGACCACCATGATGGATGTTTTGGC
AGGTAGGAAAACAGGTGGATACATAGAGGGAAACATCAGCATTTCTGGTTTTCCCAAAAATCAGGAAACCTTCGCTCGGATCTCGGGGTACTGTGAACAAAACGACATTCATTCACCACAAGTAACTGTTCACGAATCCCTTATATATTCGGCATGGCTTCGTCTGGGAAGTGATGTTGATGCAGAGAGAAGGAAGATGT
TCGTGGAACAAGTAATGGAGCTGGTGGAGTTGACTTCTTTGAGAGATTCTCTTGTTGGTCTTCCTGCAGTAACTGGTCTGTCAACAGAACAACGGAAACGATTGACTATAGCAGTAGAACTTGTTGCCAATCCTTCCATTATATTTATGGACGAACCAACCTCAGGACTGGATGCCCGTGCTGCAGCCATAGTTATGAGA
ACAGTTCGAAATACAGTTGACACAGGGCGCACAGTTGTTTGCACAATCCATCAGCCCAGCATTGATATCTTTGAAGCCTTTGACGAGCTATTCTTGATGAAAAGAGGAGGTCAGGTTATCTATGCTGGTCCATTAGGTCGTCACTCTCATAAACTAGTTGAATACTTCGAGTCGATTGAAGGGGTGACCAAGATAACTGA
TGGGTACAACCCTGCAACATGGATGTTAGAGGTCTCTTCCGTGGCGGTTGAAAACCGTCTCGGAATCGACTTTGCTGAAATTCTTCGAAATTCAGAGTTACAAAAGCGGAACAAAGCCTTGATAAAGGAATTGAGCACGCCCGCTCCTGGGGCAAAGGACCTCTACTTTCCAACGTTATATTCCCAGCCATTCTTAATAC
AGTGTGCCGCATGCTTCTGGAAACAAAGATTGTCTTACTGGCGTAATCCACAGTATACCGCTGTGCGGTTGCTTTTTACATTTGTCTGTGGCTTATTGCTCGGTACCATCTTTTGGCGTGTCGGGAATAAGAGGACTCATCAGGCCGATATATTCAACGCAATGGGTTCAATGTTTGCGGCAGTATTATTCATCGGAGTA
AACAATTCATCCTCGGTGCAACCTCTGGTCGAAATTGAAAGAACTGTATTTTACAGAGAGAAGGCTGCCGGAATGTATTCTGCTTTACCTTACGCCTTTTCACAGGTTACCATAGAGATTCCCTACGTGTTCGCCCAAGCTGTCATTTACAGCGCTATGGTGTATTCCATGATGGCCTTTCAATGGGAGGCAGGCAAATT
CTTCTGGTATCTCTTCTTTTCGTTCTTCACCTTCTTATATTTCACGTTTTACGGAATGATGAACATGTCGTTGACGCCCAACCACAACATCTCTGCTATTGTTTCGTCGGCTTTCTATTTGATATGGAGCCTCTTCTCCGGCTTTTTGATTCCACGACCGAAAATTCCTATATGGTGGAGATGGTATTACTGGGCATGCC
CCGTGGCATGGACGCTGTATGGGCTTATTGTATCGCAGTTCGGAGATCTGGAGAGTCCGATGCAACTGGTGGATGGATCGACGCAGCCCGTTAAGGTTTTCCTGGAAGAGTATTTCGGGTTCCATCACGACTTTCTGGGGGCAGTAGCAGGGGCAGTAGTAGGGTTTTGCGTGCTATTTGGTTTTGTATTTTCACTGGGC
GTCAAATTCTTGAACTTCCAACATCGATAGACGGACTACAGTTACACTGCACTTCAACATCTCAAGCTCATCCGACTGCCCAGGCATGAAATACTTCATTCAAGATCCCATGGCCATGGAAGCGAAATCCTTCATGTTAATGCATTTTCCAACAATTTGTTCTTTTTTTCGCCTGTAAAAATTTTGATGGAGAAGCTCAC
GAGCTCTCATTTATGCAAACCCATCCCGAGTATTTTCTTCTGTAAAATTTGTATTCTATATATCTTAAATGAGAAGCTCTCACGGGCTTTCGTCACTTCGTTCCAACTGTGTATGGATGGAAGGTCTTGATCATCGGTG
>TRINITY_DN123560_c2_g2_i3 from sample A3 / Example unspliced isoform:GAACGGTTGAAAATTCAGCAAAGCATGTCAGCGCCGCCTCGTCGTCCAAGCACAAATAAATGGTCCATTCGGTGCTTCACAATTTGAGTTATACTAGAGTGCATCGCTCCTGAAACGGATAATATTAGATACTCAGTGCCTTCTCTGTATTGATCCGGAAAACAGATAAATTTGTACTGTATTGTATAATCTCTAGTAGA
GTTCAGGAAGGGATCTGGGGTGGGCAACCATGGCAATGCCGGTTACTGATATGTTGAGGGCCGGGAGCAGGCGTAGCAACGCTTCCGGAATTTGGAGAGGGGATGATGCGTTCTCCAGATCCTCCAGAAGTAGAGATAATGAAGACGACGAAGAGGCCTTGAAGTGGGCGGCCTTGGAGAAGTTGCCAACTTATGATCGC
ATCCGCAAGGGGATTCTCCACAGCGTTCTGGGCGCGCACGAGGAAGTCGATGTCGCCAAGATCGGCTTTCAAGATCGCCAGCTTCTCATCGATAGATTAGTCACAACAGCCGCCGAAGATAATGAGCGTTTTCTGCTTAAGCTCCGCAACAGGATCGACAAAGTGGGAATCGACTTGCCCAAGATCGAAGTCCGTTACGA
TCACTTGAACGTGGATGCAGATGTCTATGTTGGTAGCAGATCGCTGCCTTCTGTCCCGAATTTTATGTTGAATATGCTGGAGGGGTTTTTAGGATTTCTGAAGATCTTCCCAAATAGGAAGAGACCCTTTTCAATCCTTCATGATGTTAGCGGGATCATAAAACCGTGCAGAATGACTTTGCTTTTAGGACCGCCAGGCT
CAGGGAAAACATCTTTACTCTTGGCTTTGGCTGGCAAGCTCGATTCGGAATTGAGAGTAACCGGCTCTGTGACATACAATGGGCACACACTAGATGAATTCGTGCCCCAGAGAACAGCGGCTTACATTAGCCAACATGATTTACATATTGGTGAAATGACCGTGCGAGAAACTATGGACTTCTCTGGCCGATGCCAAGGG
GTTGGAACCAGATATGATATGTTGGTTGAGCTTTCGAGAAGAGAAAAAGAAGCTGGCATCAAGCCTGATCCAGATATTGATGTTTTTATGAAGGCGATCGCTCTGGAGGGGCAAGAAACAAGCCTGGTTACGGATTACATCCTTAAGATATTAGGGCTGGACATTTGTGCGGATACGATAGTAGGAGATGAGATGCGAAG
AGGGATTTCAGGGGGTCAGAAGAAACGTGTAACCACAGGTGAGATGCTTGTTGGACCTGCCCGGGCTCTGTTCATGGACGAGATATCGACGGGGCTGGACAGCTCAACAACATTCCAAATCGTGAAATGCTTACGCCACACTGTTCATGTCTTGGATGGGACGACTTTCATTTCTCTGCTGCAACCGGCTCCGGAAACTT
ATGACCTGTTCGATGATATCGTCCTGCTTTCCGAGGGTCGGGTTGTGTATCAGGGCCCCCGCGATGATGTGCTTGAATTCTTTGAATCCATGGGTTTTAGGTGCCCTGATCGCAAGGGCGTGGCAGATTTCTTGCAGGAAGTTACTTCAAAAAAAGATCAGCAGCAATATTGGGCATTGAAAGATCAGCCGTATAGATAT
GTACCCGTCAAGGAATTTGCTGAATCATTTCAGTCATTTCATGTTGGACAGAAATTGGCTGCAGAGTTGTCCGTACCATATGATAAAACCAAGAGCCATCCTGCTGCGCTTACAACTTCGAGGTATGGTGTGAACAAGAAGGCACTGTTCAAGGCCTGTTTCGCGAGGGAATTGCTCCTAATGAAGAGAAACTCCTTCGT
CTACATCTTTAAGACCTCGCAGCTCTCGGTCATGGCTTTCATCACGATGACAGTGTTTTTGCGGACCAAGATGCACCGCCACTCACCAAACGATGGGAATATTTACATGGGCACTCTCTTCTTCTCGTTGATTATCTGCATGTTTAATGGGTTTGCAGAACTTTCAATGACAATTCAAAAGCTTCCTACATTTTACAAGC
AAAGAGACCTTCTCTTTTTTCCTTCCTGGGCCTACTCAATGCCAATTTGGGTGTTGAGAATTCCAATTTCACTTCTGGAGGCCGCAATATGGGTTTTCATAACTTATTATGTCGTGGGTTACGATCCTTATGTTGGAAGGCTCTTTCGCCAGTATCTGCTGCTGGTCAGTGTCCATCAGATGGCGACTCCGCTGTTTCGA
TTCATTGCATCAATGGGTCGGATCATGATCGTAGCCAACACATTTGCTTCTTTTACATTGGTGATTGCTTTGCTCCTCGGTGGATTTCTTCTCTCTCGACATGACATCAGAGGCTGGTGGATTTGGGGTTACTGGATATCTCCTCTCATGTATGCCCAGAATGCCATCTCCGTCAACGAGTTCTTGGGTCACAAGTGGAA
CAAGCCTGCCATGAGCAATAGCAGCGCAAATGCAATCTTATTGAGCAATGAAACCATGGGTGTATATATTCTAAAATCGCGCGGGCTATTTGCACATGGATACTGGTACTGGATTGGTGTTGTAGCTCTGCTTGGATACACGGTCCTCTTCAACTTCTGCTTCACTCTCGCGCTTTCTTACCTCAAACCTCTAGGCAAAG
CCCAGGCCGCGGTGACTGAAGAGGCTTTGCAAGATCAGCAAGCAAATAGAACAGGGGAAACGAGGACGGTTGAACTGAGCACTCGTCAAGGCTCTAAAGGGAAGTCCATTGCAGAATCTACGTCCGAAGGGCGTGCTGGTGAAATTACTTTAGGGGCAACAGCCAATGCTACTTCCGGAGGGGCAACGAAGGGGATGGTT
CTTCCATTTCAACCGCTCTCTATAGCCTTCGACGATATTTGTTACTTCGTCGACATGCCCGCCGAAATGACAGAACAAGGCGTTACAGAAACCCGGCTGCAGCTGTTAAGAAATGTAAGTGGAGCTTTCAGACCAGGCGTTCTTACAGCGTTAGTGGGAGTTAGCGGTGCTGGAAAGACCACCATGATGGATGTTTTGGC
AGGTAGGAAAACAGGTGGATACATAGAGGGAAACATCAGCATTTCTGGTTTTCCCAAAAATCAGGAAACCTTCGCTCGGATCTCGGGGTACTGTGAACAAAACGACATTCATTCACCACAAGTAACTGTTCACGAATCCCTTATATATTCGGCATGGCTTCGTCTGGGAAGTGATGTTGATGCAGAGAGAAGGAAGATGT
TCGTGGAACAAGTAATGGAGCTGGTGGAGTTGACTTCTTTGAGAGATTCTCTTGTTGGTCTTCCTGCAGTAACTGGTCTGTCAACAGAACAACGGAAACGATTGACTATAGCAGTAGAACTTGTTGCCAATCCTTCCATTATATTTATGGACGAACCAACCTCAGGACTGGATGCCCGTGCTGCAGCCATAGTTATGAGA
ACAGTTCGAAATACCGTTGACACAGGGCGCACAGTTGTTTGCACAATCCATCAGCCCAGCATTGATATCTTTGAAGCCTTTGACGAGCTATTCTTGATGAAAAGAGGAGGTCAGGTTATCTATGCTGGTCCATTAGGTCGTCACTCTCATAAACTGGTTGAATACTTCGAGTCAATTGATGGGGTGCCTAAGATAACTGA
TGGGTACAACCCTGCAACATGGATGTTAGAGGTCTCTTCTGTGGCGGTTGAAAACCGTCACGGAATCGACTTTGCTGAAATTTATCGAAATTCAGAGTTACACCAGCGGAACAAAGCCCTGATAAAGGAATTGAGCACGCCTGCTCCTGGGACAAAAGACCTCTACTTTCCTACTTTATATTCCCAGCCATTCTTAACAC
AGTGTGCCGCATGCTTTTGGAAACAAAGATTGTCTTACTGGCGTAATCCACAGTATACCGCTGTGCGATTCTTTTTTACATTTATTTGTGGTATTATGTTCGGTACCATCTTTTGGCGTGTCGGGAATAAGAGgtcagtaccaatgcatccatggaaacatttcggtggtttgaagttttcaatcccaaaaataacgttt
aacatgatgtggttgcactctgatggaacagGACTCATCAGGCCGATATATTCAACGCAATGGGTTCAATGTTTGCGGCAGTATTATTCATCGGAGTAAACAATTCATCCTCGGTGCAACCTCTGGTCGAAATTGAAAGAACTGTATTTTACAGAGAGAAGGCTGCCGGAATGTATTCTGCTTTACCTTACGCCTTTTCA
CAGGTTACCATAGAGATTCCCTACGTGTTCGCCCAAGCTGTCATTTACAGCGCTATGGTGTATTCCATGATGGCCTTTCAATGGGAGGCAGGCAAATTCTTCTGGTATCTCTTCTTTTCGTTCTTCACCTTCTTATATTTCACGTTTTACGGAATGATGAACATGTCGTTGACGCCCAACCACAACATCTCTGCTATTGT
TTCGTCGGCTTTCTATTTGATATGGAGCCTCTTCTCCGGCTTTTTGATTCCACGACCGAAAATTCCTATATGGTGGAGATGGTATTACTGGGCATGCCC
Intron 6 GTTAGTGATC ... GGGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.34 | 146 | 0 | 35 |
| A2 | 19.81 | 85 | 0 | 21 |
| A3 | 14.58 | 123 | 0 | 21 |
| A4 | 11.11 | 88 | 0 | 11 |
| A5 | 14.93 | 57 | 2 | 10 |
| A6 | 16.22 | 124 | 0 | 24 |
| A7 | 15.16 | 207 | 0 | 37 |
| A8 | 18.69 | 87 | 0 | 20 |
| A9 | 10.83 | 140 | 0 | 17 |
| A10 | 16.09 | 146 | 1 | 28 |
>TRINITY_DN112782_c1_g1_i12 from sample A5 / Example spliced isoformCCTGCCATGAGCAATAGCAGCGCAAATGCAATCTTATTGAGCAATGAAACCATGGGTGTATATATTCTAAAATCGCGCGGGCTATTTGCACATGGATACTGGTACTGGATTGGTGTTGTAGCTCTGCTTGGATACACGGTCCTCTTCAACTTTTGCTTCACTCTCGCGCTTTCTTACCTCAAACCTCTAGGCAAAGCCCA
GGCCGCGGTGACTGAAGAGGCTTTGCAAGATCAGCAAGCAAATAGAACAGGGGAAACGAGGACGGTTGAACTGAGCACTCGTCAAGGCTCTAAAGGGAAGTCCATTGCAGAATCCGCATCCGAAGCTCGTGCAGGTGAAATTGTGAGGAGAAGTAGTGTATCGTCTGCTGGATCTCTATCCGATAGACTGGGGGCAACGG
CTGCTGCTAATTCTGGAAAGGCCAAAAAGGGCATGGTTCTTCCATTTGAAGCTCTCTCCATAGCCTTCGACGATATTAGTTACTATGTCGACATGCCTGCGGAAATGAAAGAACAAGGCATTACAGAAACCCGGCTGCAGTTGTTAAGAAGTGTGAGTGGAGCTTTCAGACCGGGCGTTCTTACAGCGTTAGTGGGAGTT
AGCGGTGCTGGAAAGACCACTTTGATGGATGTTTTGGCTGGAAGGAAAACAGGTGGATACATAGAGGGCAACATTAGTATTTCTGGTTTCCCCAAAAATCAAGAAACCTTTGCCCGGATCTCAGGGTACTGTGAACAAAACGACATTCATTCACCACAAGTAACAGTCCTCGAATCCCTTACATATTCTGCATGGCTTCG
CCTTGGAAGCGACGTTGATGCTGAAACAAGGAAGCTATTCGTGGAAGAAGTTATGGAGCTAGTGGAATTGAATTCTTTGAGAGATTCTCTTGTTGGTCTTCCTGGAGTAACTGGTCTATCAACAGAACAGCGCAAACGATTGACTATAGCAGTCGAACTTGTGGCCAATCCTTCTATTATATTTATGGACGAACCAACTT
CGGGATTGGATGCCCGTGCTGCAGCTATAGTTATGAGAACAGTTAGAAATACCGTTGACACAGGGCGCACAGTTGTTTGCACAATCCATCAGCCTAGCATTGATATCTTTGAAGCCTTCGACGAGCTATTTCTGATGAAAAGAGGAGGCCAGGTTATCTACGCAGGTCCATTAGGGCGTCACTCTCATAAACTAGTTGAA
TACTTCGAGTC
>TRINITY_DN112782_c1_g1_i3 from sample A5 / Example unspliced isoform:GCTGAAACAAGGAAGgttagtgatcttatatatgttgtcctgctttcctttgaatttctttctctgcttttggtggttgagttaaatctaatgggattgcagCTATTCGTGGAAGAAGTTATGGAGCTAGTGGAATTGAATTCTTTGAGAGATTCTCTTGTTGGTCTTCCTGGAGTAACTGGTCTATCAACAGAACAGCG
CAAACGATTGACTATAGCAGTCGAACTTGTGGCCAATCCTTCTATTATATTTATGGACGAACCAACTTCGGGATTGGATGCCCGTGCTGCAGCTATAGTTATGAGAACAGTTAGAAATACCGTTGACACAGGGCGCACAGTTGTTTGCACAATCCATCAGCCTAGCATTGATATCTTTGAAGCCTTCGACGAGCTATTTC
TGATGAAAAGAGGAGGCCAGGTTATCTACGCAGGTCCATTAGGGCGTCACTCTCATAAACTAGTTGAATACTTCGAGTC