sp|Q9FGM1|PYL8_ARATH ----> Abscisic acid receptor PYL8

Intron 1 GTAGGTGACT ... TTTGTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	53.85	6	7	1
A2	51.85	13	14	5
A3	60	4	6	5
A4	58.33	10	14	2
A5	42.86	4	3	5
A6	41.82	32	23	2
A7	45.21	40	33	3
A8	45.45	18	15	9
A9	47.62	11	10	3
A10	46	27	23	1

>TRINITY_DN88936_c0_g1_i1 from sample A2 / Example spliced isoform

AAAGAAGCGCTGCAGAGCAATTAGCGTGTAGTGTACTATATTCAACAAATGGAGAGAAATGAATGTGAATAACAGAGAGGATAGTGAATCTGAATGGTGAATTAAGGGCGCTGGGCTCCGCCCTGGTGGTGACAACACGTGTTTTATCGACAAAGGGACGCAAAGCTCGCATTTGGACAACACACCAACGCAACGCAACG
CAACGCAACACAGGGATCAGGCAGATGAGAGTTCACCTCACCAAACCTCTTAATGCGATCTAGTTTTTTTATCTAGAGACCTCCAGACCAAATTCAATACAATTGTAGCAAAAATTATCTTCACAGCAACGGTAATAACAAAAAAACCAGGAGGATAGGATGAATCTCACATAGTGGAGAATATGATACCCTCTGCACCC
CGTAGAGCTCTTAAACAATTGAATGGAATAGTGGGTGGGACTAGAATTGGGATTTGGATTGGGAGCTCAATTATCTGAGTTACCCATTTTATAAGTAATCAGCTCTCAGAGTTGAATCTCATCTGAGAGAAGTGGAAGAAAAAAAGTAAAAGTTGAGGAAGAACAATGGTAGGTTAAGATCAGGAAGAAAGCGGAGAGAA
TCAGAGAAAAGAACCTTCAAAGACAGAAAATCCGGAGATGATAGAAGAGTTTTTGTCTGCGAGTGTTGGTTAGAGGGCTTCTGCGAAAGGCTGACAGGTGTTAGCCCATGATCTGCGAGCACAGGGAGAGTGTTCGCATCTCTGCTGTGGGATATAAATAGTTTTGAAGGTTGGGATAGAAAGGAAGGGTTTACTAACTT
ATTGAAGAAGGGATATGGTGGGCATGTGAGCCACCATGAGCGCCAATGGAGCTAGCATGGAGTCGGAATATGTGTGGAGACATCACAAGCATGAGATGCAGGAGAATCAGTGCAGTTCTGTCCTTGTCAAGCACATCAGGGCTCCCGTTCATCTGGTTTGGTCATTAGTAAGAAGATTTGATCAGCCTCAAAACTATAAA
CCTTTTGTGCATAGCTGTATAGTCCGTGGCGGCAATACTGAAGGGAGCATTCGGGAGGTGAACGTGAAATCTGGCCTTCCAGCTACAACAAGTACCGAAAGACTAGAAATCCTGGATGACAAGGAGCACATTCTCAGTGTTAGATTCCTTGGAGGGGACCATCGGTTGAAGTGAGCTTGTTCTCTGTCATGTTCCATAAC
TTCTAGTTCTTTTTATGTACAGAATTATTGGTCAATTATCACTCTGCATCCTGAGGTTATTGATGGAAGGCCGGGTACACTGGCCTTAGAATCCTATGTGGTTGATGTTCCTGAAGGAAATACTAAGGAAGAGACTCGCTACTTTGTCGAAGCACTGATCAAATGCAATTTGAAATCTCTTGCTGATATCTCCGAGAGAC
TGGCATTCCAAGACCATACAGAACTACTTGAGAGATGATACAATCAGATCTCTATTCTTCAAAGTTTTGCTCAGATGATGGTTACATAGGAAACACCCACTTCTAAGTTCCACATAGCCTGGAATGTTTTCAGAGGAGAAGACTCCGCGAGGCAATATTTGGAATCTTATGTTTGAATGTTTTCATGTTACATGTTCTAT
TTGGTGACAATGTATATTATAGTGTGAGTTTTTTGGCTTCGAACATAGCCTGGATGCTTTCCCCAGCATACCTTGAAGTGGGTTTTGTAACCTACTACCGAGATTGTCTGGCAAATGTGCAAATTCTTCAAGAATCAAATTTCAACCTTGCTTCCCCATTGACATGGAATTCAAGCTCTATTATTCATAGAATTTCAAGC
TGTAAAGCTCCAGAAAGATCTCTAGTTCTTATATGTGGATAGCAGAACAGTTTCATAAACTGTACATTGGGTGTTTGTAAGTAAATCATTCTTATTTTTGTATCAATGTATATGATACTCTTACTGCCT

>TRINITY_DN88936_c0_g1_i2 from sample A2 / Example unspliced isoform:

AAAGAAGCGCTGCAGAGCAATTAGCGTGTAGTGTACTATATTCAACAAATGGAGAGAAATGAATGTGAATAACAGAGAGGATAGTGAATCTGAATGGTGAATTAAGGGCGCTGGGCTCCGCCCTGGTGGTGACAACACGTGTTTTATCGACAAAGGGACGCAAAGCTCGCATTTGGACAACACACCAACGCAACGCAACG
CAACGCAACACAGGGATCAGGCAGATGAGAGTTCACCTCACCAAACCTCTTAATGCGATCTAGTTTTTTTATCTAGAGACCTCCAGACCAAATTCAATACAATTGTAGCAAAAATTATCTTCACAGCAACGGTAATAACAAAAAAACCAGGAGGATAGGATGAATCTCACATAGTGGAGAATATGATACCCTCTGCACCC
CGTAGAGCTCTTAAACAATTGAATGGAATAGTGGGTGGGACTAGAATTGGGATTTGGATTGGGAGCTCAATTATCTGAGTTACCCATTTTATAAGTAATCAGCTCTCAGAGTTGAATCTCATCTGAGAGAAGTGGAAGAAAAAAAGTAAAAGTTGAGGAAGAACAATGGTAGGTTAAGATCAGGAAGAAAGCGGAGAGAA
TCAGAGAAAAGAACCTTCAAAGACAGAAAATCCGGAGATGATAGAAGAGTTTTTGTCTGCGAGTGTTGGTTAGAGGGCTTCTGCGAAAGGCTGACAGGTGTTAGCCCATGATCTGCGAGCACAGGGAGAGTGTTCGCATCTCTGCTGTGGGATATAAATAGTTTTGAAGGTTGGGATAGAAAGGAAGGGTTTACTAACTT
ATTGAAGAAGGGATATGGTGGGCATGTGAGCCACCATGAGCGCCAATGGAGCTAGCATGGAGTCGGAATATGTGTGGAGACATCACAAGCATGAGATGCAGGAGAATCAGTGCAGTTCTGTCCTTGTCAAGCACATCAGGGCTCCCGTTCATCTGGTTTGGTCATTAGTAAGAAGATTTGATCAGCCTCAAAACTATAAA
CCTTTTGTGCATAGCTGTATAGTCCGTGGCGGCAATACTGAAGGGAGCATTCGGGAGGTGAACGTGAAATCTGGCCTTCCAGCTACAACAAGTACCGAAAGACTAGAAATCCTGGATGACAAGGAGCACATTCTCAGTGTTAGATTCCTTGGAGGGGACCATCGGTTGAAGgtaggtgactgtaattatttacaggtatt
cagactactattttatggttaacattgttacagcaagaaatgttgattagaacaaactggtttatcaaacctgaatctacttcagtgtccttaattttggtagtccctttttctggcttagatgttccctttctggcaaatttctaagattttccagctttgtttgttcattttgttgcagTGAGCTTGTTCTCTGTCAT
GTTCCATAACTTCTAGTTCTTTTTATGTACAGAATTATTGGTCAATTATCACTCTGCATCCTGAGGTTATTGATGGAAGGCCGGGTACACTGGCCTTAGAATCCTATGTGGTTGATGTTCCTGAAGGAAATACTAAGGAAGAGACTCGCTACTTTGTCGAAGCACTGATCAAATGCAATTTGAAATCTCTTGCTGATATC
TCCGAGAGACTGGCATTCCAAGACCATACAGAACTACTTGAGAGATGATACAATCAGATCTCTATTCTTCAAAGTTTTGCTCAGATGATGGTTACATAGGAAACACCCACTTCTAAGTTCCACATAGCCTGGAATGTTTTCAGAGGAGAAGACTCCGCGAGGCAATATTTGGAATCTTATGTTTGAATGTTTTCATGTTA
CATGTTCTATTTGGTGACAATGTATATTATAGTGTGAGTTTTTTGGCTTCGAACATAGCCTGGATGCTTTCCCCAGCATACCTTGAAGTGGGTTTTGTAACCTACTACCGAGATTGTCTGGCAAATGTGCAAATTCTTCAAGAATCAAATTTCAACCTTGCTTCCCCATTGACATGGAATTCAAGCTCTATTATTCATAG
AATTTCAAGCTGTAAAGCTCCAGAAAGATCTCTAGTTCTTATATGTGGATAGCAGAACAGTTTCATAAACTGTACATTGGGTGTTTGTAAGTAAATCATTCTTATTTTTGTATCAATGTATATGATACTCTTACTGCCT

Intron 2 GTAGGTGACT ... TTATGTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	27.54	25	7	12
A2	35.29	22	14	10
A3	26.83	15	6	5
A4	30.77	27	14	10
A5	24	19	3	9
A6	23.76	77	23	25
A7	23.32	120	33	40
A8	27.49	62	15	32
A9	24.41	48	10	21
A10	23.81	80	23	27

>TRINITY_DN88936_c0_g1_i3 from sample A2 / Example spliced isoform

AAAGAAGCGCTGCAGAGCAATTAGCGTGTAGTGTACTATATTCAACAAATGGAGAGAAATGAATGTGAATAACAGAGAGGATAGTGAATCTGAATGGTGAATTAAGGGCGCTGGGCTCCGCCCTGGTGGTGACAACACGTGTTTTATCGACAAAGGGACGCAAAGCTCGCATTTGGACAACACACCAACGCAACGCAACG
CAACGCAACACAGGGATCAGGCAGATGAGAGTTCACCTCACCAAACCTCTTAATGCGATCTAGTTTTTTTATCTAGAGACCTCCAGACCAAATTCAATACAATTGTAGCAAAAATTATCTTCACAGCAACGGTAATAACAAAAAAACCAGGAGGATAGGATGAATCTCACATAGTGGAGAATATGATACCCTCTGCACCC
CGTAGAGCTCTTAAACAATTGAATGGAATAGTGGGTGGGACTAGAATTGGGATTTGGATTGGGAGCTCAATTATCTGAGTTACCCATTTTATAAGTAATCAGCTCTCAGAGTTGAATCTCATCTGAGAGAAGTGGAAGAAAAAAAGTAAAAGTTGAGGAAGAACAATGGTAGGTTAAGATCAGGAAGAAAGCGGAGAGAA
TCAGAGAAAAGAACCTTCAAAGACAGAAAATCCGGAGATGATAGAAGAGTTTTTGTCTGCGAGTGTTGGTTAGAGGGCTTCTGCGAAAGGCTGACAGGTGTTAGCCCATGATCTGCGAGCACAGGGAGAGTGTTCGCATCTCTGCTGTGGGATATAAATAGTTTTGAAGGTTGGGATAGAAAGGAAGGGTTTACTAACTT
ATTGAAGAAGGGATATGGTGGGCATGTGAGCCACCATGAGCGCCAATGGAGCTAGCATGGAGTCGGAATATGTGTGGAGACATCACAAGCATGAGATGCAGGAGAATCAGTGCAGTTCTGTCCTTGTCAAGCACATCAGGGCTCCCGTTCATCTGGTTTGGTCATTAGTAAGAAGATTTGATCAGCCTCAAAACTATAAA
CCTTTTGTGCATAGCTGTATAGTCCGTGGCGGCAATACTGAAGGGAGCATTCGGGAGGTGAACGTGAAATCTGGCCTTCCAGCTACAACAAGTACCGAAAGACTAGAAATCCTGGATGACAAGGAGCACATTCTCAGTGTTAGATTCCTTGGAGGGGACCATCGGTTGAAGAATTATTGGTCAATTATCACTCTGCATCC
TGAGGTTATTGATGGAAGGCCGGGTACACTGGCCTTAGAATCCTATGTGGTTGATGTTCCTGAAGGAAATACTAAGGAAGAGACTCGCTACTTTGTCGAAGCACTGATCAAATGCAATTTGAAATCTCTTGCTGATATCTCCGAGAGACTGGCATTCCAAGACCATACAGAACTACTTGAGAGATGATACAATCAGATCT
CTATTCTTCAAAGTTTTGCTCAGATGATGGTTACATAGGAAACACCCACTTCTAAGTTCCACATAGCCTGGAATGTTTTCAGAGGAGAAGACTCCGCGAGGCAATATTTGGAATCTTATGTTTGAATGTTTTCATGTTACATGTTCTATTTGGTGACAATGTATATTATAGTGTGAGTTTTTTGGCTTCGAACATAGCCT
GGATGCTTTCCCCAGCATACCTTGAAGTGGGTTTTGTAACCTACTACCGAGATTGTCTGGCAAATGTGCAAATTCTTCAAGAATCAAATTTCAACCTTGCTTCCCCATTGACATGGAATTCAAGCTCTATTATTCATAGAATTTCAAGCTGTAAAGCTCCAGAAAGATCTCTAGTTCTTATATGTGGATAGCAGAACAGT
TTCATAAACTGTACATTGGGTGTTTGTAAGTAAATCATTCTTATTTTTGTATCAATGTATATGATACTCTTACTGCCT

>TRINITY_DN88936_c0_g1_i2 from sample A2 / Example unspliced isoform:

AAAGAAGCGCTGCAGAGCAATTAGCGTGTAGTGTACTATATTCAACAAATGGAGAGAAATGAATGTGAATAACAGAGAGGATAGTGAATCTGAATGGTGAATTAAGGGCGCTGGGCTCCGCCCTGGTGGTGACAACACGTGTTTTATCGACAAAGGGACGCAAAGCTCGCATTTGGACAACACACCAACGCAACGCAACG
CAACGCAACACAGGGATCAGGCAGATGAGAGTTCACCTCACCAAACCTCTTAATGCGATCTAGTTTTTTTATCTAGAGACCTCCAGACCAAATTCAATACAATTGTAGCAAAAATTATCTTCACAGCAACGGTAATAACAAAAAAACCAGGAGGATAGGATGAATCTCACATAGTGGAGAATATGATACCCTCTGCACCC
CGTAGAGCTCTTAAACAATTGAATGGAATAGTGGGTGGGACTAGAATTGGGATTTGGATTGGGAGCTCAATTATCTGAGTTACCCATTTTATAAGTAATCAGCTCTCAGAGTTGAATCTCATCTGAGAGAAGTGGAAGAAAAAAAGTAAAAGTTGAGGAAGAACAATGGTAGGTTAAGATCAGGAAGAAAGCGGAGAGAA
TCAGAGAAAAGAACCTTCAAAGACAGAAAATCCGGAGATGATAGAAGAGTTTTTGTCTGCGAGTGTTGGTTAGAGGGCTTCTGCGAAAGGCTGACAGGTGTTAGCCCATGATCTGCGAGCACAGGGAGAGTGTTCGCATCTCTGCTGTGGGATATAAATAGTTTTGAAGGTTGGGATAGAAAGGAAGGGTTTACTAACTT
ATTGAAGAAGGGATATGGTGGGCATGTGAGCCACCATGAGCGCCAATGGAGCTAGCATGGAGTCGGAATATGTGTGGAGACATCACAAGCATGAGATGCAGGAGAATCAGTGCAGTTCTGTCCTTGTCAAGCACATCAGGGCTCCCGTTCATCTGGTTTGGTCATTAGTAAGAAGATTTGATCAGCCTCAAAACTATAAA
CCTTTTGTGCATAGCTGTATAGTCCGTGGCGGCAATACTGAAGGGAGCATTCGGGAGGTGAACGTGAAATCTGGCCTTCCAGCTACAACAAGTACCGAAAGACTAGAAATCCTGGATGACAAGGAGCACATTCTCAGTGTTAGATTCCTTGGAGGGGACCATCGGTTGAAGgtaggtgactgtaattatttacaggtatt
cagactactattttatggttaacattgttacagcaagaaatgttgattagaacaaactggtttatcaaacctgaatctacttcagtgtccttaattttggtagtccctttttctggcttagatgttccctttctggcaaatttctaagattttccagctttgtttgttcattttgttgcagtgagcttgttctctgtcat
gttccataacttctagttctttttatgtacagAATTATTGGTCAATTATCACTCTGCATCCTGAGGTTATTGATGGAAGGCCGGGTACACTGGCCTTAGAATCCTATGTGGTTGATGTTCCTGAAGGAAATACTAAGGAAGAGACTCGCTACTTTGTCGAAGCACTGATCAAATGCAATTTGAAATCTCTTGCTGATATC
TCCGAGAGACTGGCATTCCAAGACCATACAGAACTACTTGAGAGATGATACAATCAGATCTCTATTCTTCAAAGTTTTGCTCAGATGATGGTTACATAGGAAACACCCACTTCTAAGTTCCACATAGCCTGGAATGTTTTCAGAGGAGAAGACTCCGCGAGGCAATATTTGGAATCTTATGTTTGAATGTTTTCATGTTA
CATGTTCTATTTGGTGACAATGTATATTATAGTGTGAGTTTTTTGGCTTCGAACATAGCCTGGATGCTTTCCCCAGCATACCTTGAAGTGGGTTTTGTAACCTACTACCGAGATTGTCTGGCAAATGTGCAAATTCTTCAAGAATCAAATTTCAACCTTGCTTCCCCATTGACATGGAATTCAAGCTCTATTATTCATAG
AATTTCAAGCTGTAAAGCTCCAGAAAGATCTCTAGTTCTTATATGTGGATAGCAGAACAGTTTCATAAACTGTACATTGGGTGTTTGTAAGTAAATCATTCTTATTTTTGTATCAATGTATATGATACTCTTACTGCCT