sp|Q9FJN9|PABN2_ARATH ----> Polyadenylate-binding protein 2
Intron 1 GTAGTGCTGC ... TCATGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.4 | 23.9 | 0 | 5 |
| A2 | 13.92 | 24.9 | 0 | 4 |
| A3 | 13.93 | 24.7 | 0 | 4 |
| A4 | 14.03 | 18.4 | 0 | 3 |
| A5 | 13.92 | 12.4 | 0 | 2 |
| A6 | 24.56 | 64.6 | 1 | 21 |
| A7 | 19.37 | 75.1 | 0 | 18 |
| A8 | 19.28 | 63.3 | 0 | 15 |
| A9 | 22 | 53.4 | 1 | 15 |
| A10 | 20.8 | 49.7 | 0 | 13 |
>TRINITY_DN41397_c0_g2_i3 from sample A6 / Example spliced isoformAAACCGTCTAGCAGACATTTGAGATCATATTTCATCTGTATCCGTATTTTGGGATGACAGCAGGGGAAGAGGGTATGGAAGCCTCTTCCGATCTGCTAAAGGGGAGGACCTTCTCCATAGACCTTTCGAGCGATGGCGCTGCGCGTTTGCGAGAGGCCGTCAAACAGAAGCTTGCAGAATTCATGGGCAGCTACACGGAC
GATGTTTTAGCGGAATATGTTGCTGTACTTGTTTGTCATGGAAAGCAACAGGATCAGGCAAAGAGAGACCTGGATGCATTTCTTGGCGATCACAGTGGTGCATTTGTGGCATGGCTATGGGACCACATTGCATCCAACATAAACCTGTACATGTCATCTTCAGAATTATCACAGCCGGTTGAAGTAAATGAGCAAGCAAA
AGTTAGTTCTGAAGAGCAAGTGAAAAGGAGCTCTGAGAAACAGAATAAAAGGAATGTTGATGCAGAAACAAAGTCTAAAGGTGACAATGGAGCATCAGTTTCAGTTTTGACTCACACAGAGGTCAATGAACGACCTATTAAGTCCCATGAGAATCGACGAAAAAGGGGTTGGAACCCTTCTGATCATAAACCATTAAGAG
AAGTAAAGGAAACACCGAGACAGCAAAGTAAGTATGATGAAAGAGCCGACTCTAGAGCAGTTCAAAATTCTCAGTTTAAAGGCAAGTCAGTGTTAAAGAGATCACATTCTCCAGAGCCCTGGGCACGCAGAGAGCGGTTTCGGGATGATGAAGGTCATTCGAACAAGAGAATGAGCTCACCTACAGGTGTGCATGCTCCC
CGACGACTTCTTCAATCTGCAGTACGAGAAGCAGTTGGTCCTAATGGGCCAGCTAATTCAAAACGATCAGAATCATCATCAAAGCGTCTGCGTTCAGTTGTTTCTACAACTGTTGAGAATTCGGATGCAGCATTGGATGGTGTTGAAGCCCATCAGAGGCCAAGGGCACTTGCAAAATCTTTGCCAGCTATGGCTGTTGC
CATGAAGGCAGCAGCTGCAGCAGCTGAGGATGCAGCTAAGTTCAGGTCAGCAGGAAGTGTCTTTGATAGGCTGGGTAAAAGGATTGACAGTAGTTTGAATGGATTGCATGAAGTGGATGAAGAAGATATGCTGGATGATGGAAACAACATTGAAAACACAATAACAGCATCAGTGTATCAAGGGCATGAATATCAACAAA
GGACTCAAGTTCATAGTAGGTTAAGTAGAGGACTAACAGATGATGTAGCATTGATGGATAGTGAAAGCAATTATCCCTCAAATCCAGCTACTTATAACGAGGGATATGATGAGGTACAAGAAGATGCAAGGTACTCACGTCGTTATGCCAGTGTGTCAACAAGAAGAAAACAATTGGAAACCACAGAGAGTGATGGTATC
TCAAGGTTATCAAACTTTGAGAGGCAACCTATACAGGATCAAGAAAAACAAAAACCTCATGAGGAATCAGTTACTGTAAAGTATCGTCTGGCAGGGAACTCTGATGAAGTGGCAAGGGAAAGCAGAATGCAAAAGGCTTCATTATCTGAAGCCCCAAGTGCTTCGAGGAAAATTGTGAACATATCCGTGAATGTGAATAC
ATGGAAGTCACCTCATTTCCAGTCAGCTAGGGATGCAGTTGACAGGGAAACAAGAACCTCTAATACAGATACAAAGATATTGTCTGATCACAATGAAATGGATATTGATGGCACTTTGCCTGAGAACTCTGAAATGCGGCTTCAAGCTGAAAGTGGTCAGATTGCCCCTGTGACCGATCCAAATAATATATCAGGTATGG
ATTATTGCAATGATGTCAGGAAGGGTACATCTTCAATTTCTGGTGTTAACACTTCAGTCCGACCCGAGGATGCAGATTCAAGGACAATTTTTGTTTCTAATGTTCACTTTGCAGCAACAAAAGAGGCAATAACTAAGCATTTCAGTCGTTGTGGAGAAGTGCTTAAAGTTATAATTCTAACTGATGCTGCAACTGGGCAG
CCGAAAGGGTCAGCATACATTGAATTCTCTTCAAGAGAAACAGCTGAAATCGCATTGACCTTGAACGAGACATCATTTATGTCACGGATGCTGAAGGTAGTGCGAAAAAATGCTTCACATGTTGAACCTTCTATCATTGCTCGCCCCCCATTACGTCGACCTCTTCAGTTTAGTGCCTGGCGTCCAAACCGAGCTGTATA
TGGCAGAGGCGTAGCTAGTACATACAGGAGAGGCTACAACGCAAGGCCTTTTGGTTCTCGCAGTCTACAATGGAGGCGAGATACATCATCAGGTGGAACCTCTGACAATTCAGCTTCTTCTCTTAATGAACCTCAATCTGGAATGAACTCTGTTCCTGCATTTGGTGGAAATCCTGCTGGTCTAGCCTCTGCACAGTTGC
CACGACCTCTTACTTATATCCGAAATGCTACAAAATCATCAAATGAGAACACTGGCAAGACCCAAGAGTAGTAGCTGCCCTGGTTGGAATGTGATGTTATACCAGAGCAATAAAAAGAGAATTTGCTACAAATGGCTATTCTTTTGTACGTGTATTTTGGAGACCCTACAAGCAATATGGTACACGACTGGGGAACGGTC
TTGCACAAGTACCATGTTCAAAACGGCATGCTAATATATCCAATTTAATGGAGCATCGTTTTACCCATATAACGAAGATAAAATAAAGAAGAGCATGCCGCATATAAAGGAGCTACAGGCTGATTACATTTTTCAAAAGGAATTGATGATTTGGAGGTGTATGTTTTGAAGTGTCTGGGATGGCATTGTACGACGATTGC
TGTATCTATGAGAAGCCTACAATAGTATTTGTTGGCGGCAGTATACCAGATACATCTGCTGCATTCTAAGAACATTCTGTTAAAAGATTTCATTTTTCTACTTCAGTTAGATGTCCTGTGTCGTAAATATGATTTGGTAGATCTTATTTCATATAATTTTTTAAGGTTATCAAGTTTACTGGATGGCACAAAACTTTGTT
AGTTTGGTAACTGTTTTCACATTATGCCTCGTACCGGCATTTGGTTTGACAATGCCGTTATGCTTTTGCTCTGCGTCCTTCTGAGAGTCAGCTCCAGTGTTTACTTTCTTTTCGAAGTAAAATAATGAATTTAATTTGCTCTTTTATATCGAACTACATTGACTAGAAAATTTGGCCGTGAAAATCACGAGTGAGTTGCC
TTTAAACACATTAATCACCTGTTGAAACTCCATATATTTGTGTTGAGGTTGTATGTGGCTGGGCTGCAAGGAGGAAGGGCTTATATGTAATGGAGATTGAAGTTTGAATCAACGAGCGGAGCTGAGTATGCCTATATACATGTGCAATGACATCTTAAAATATCGTTTTTTATTTTTTATTTTTTTTAAACAGAAACAGG
TGAACGGTTTATATTAGGCTGTGCAGAGCCTTTCAGTACAAAAAACAAAATCCAGCTCTCTGCATCAGAGGAAAATATCGTTTGACGCAGGCCACTGCTTAGGTATTTTTCACCATGCAATTCTTGTTCCTTTGCATTCTACATGTACAAGCTTTTTGAAATGATTGTTATTCTAAATAATGTTTAAAAATACATCATGC
AACTTGTTCATTTGCATTCTACATGTACAAGCCTTTTGAAATGATTGTCAATGGTTTATATGATCGAGGCACCCAGCTTCAAGTCACGCAGATTCGTGC
>TRINITY_DN41397_c0_g2_i2 from sample A6 / Example unspliced isoform:GTCACGGATGCTGAAGgtagtgctgcacgttttttaagtttactgggtttgtatttccactataaagtttacattaagagctactatatttagtgcttatgctgttattcatgcacagGTAGTGCGAAAAAATGCTTCACATGTTGAACCTTCTATCATTGCTCGCCCCCCATTACGTCGACCTCTTCAGTTTAGTGCCT
GGCGTCCAAACCGAGCTGTATATGGCAGAGGCGTAGCTAGTACATACAGGAGAGGCTACAACGCAAGGCCTTTTGGTTCTCGCAGTCTACAATGGAGGCGAGATACATCATCAGGTGGAACCTCTGACAATTCAGCTTCTTCTCTTAATGAACCTCAATCTGGAATGAACTCTGTTCCTGCATTTGGTGGAAATCCTGCT
GGTCTAGCCTCTGCACAGTTGCCACGACCTCTTACTTATATCCGAAATGCTACAAAATCATCAAATGAGAACACTGGCAAGACCCAAGAGTAGTAGCTGCCCTGGTTGGAATGTGATGTTATACCAGAGCAATAAAAAGAGAATTTGCTACAAATGGCTATTCTTTTGTACGTGTATTTTGGAGACCCTACAAGCAATAT
GGTACACGACTGGGGAACGGTCTTGCACAAGTACCATGTTCAAAACGGCATGCTAATATATCCAATTTAATGGAGCATCGTTTTACCCATATAACGAAGATAAAATAAAGAAGAGCATGCCGCATATAAAGGAGCTACAGGCTGATTACATTTTTCAAAAGGAATTGATGATTTGGAGGTGTATGTTTTGAAGTGTCTGG
GATGGCATTGTACGACGATTGCTGTATCTATGAGAAGCCTACAATAGTATTTGTTGGCGGCAGTATACCAGATACATCTGCTGCATTCTAAGAACATTCTGTTAAAAGATTTCATTTTTCTACTTCAGTTAGATGTCCTGTGTCGTAAATATGATTTGGTAGATCTTATTTCATATAATTTTTTAAGGTTATCAAGTTTA
CTGGATGGCACAAAACTTTGTTAGTTTGGTTTTCATATATGGCATTCTAACTGTTTTCACATTATGCCTCGTACCGGCATTTGGTTTGACAATGCCGTTATGCTTTTGCTCTGCGTCCTTCTGAGAGTCAGCTCCAGTGTTTACTTTCTTTTCGAAGTAAAATAATGAATTTAATTTGCTCTTTTATATCGAACTACATT
GACTAGAAAATTTGGCCGTGAAAATCACGAGTGAGTTGCCTTTAAACACATTAATCACCTGTTGAAACTCCATATATTTGTGTTGAGGTTGTATGTGGCTGGGCTGCAAGGAGGAAGGGCTTATATGTAATGGAGATTGAAGTTTGAATCAACGAGCGGAGCTGAGTATGCCTATATACATGTGCAATGACATCTTAAAA
TATCGTTTTTTATTTTTTATTTTTTTTAAACAGAAACAGGTGAACGGTTTATATTAGGCTGTGCAGAGCCTTTCAGTACAAAAAACAAAATCCAGCTCTCTGCATCAGAGGAAAATATCGTTTGACGCAGGCCACTGCTTAGGTATTTTTCACCATGCAATTCTTGTTCCTTTGCATTCTACATGTACAAGCTTTTTGAA
ATGATTGTTATTCTAAATAATGTTTAAAAATACATCATGCAACTTGTTCATTTGCATTCTACATGTACAAGCCTTTTGAAATGATTGTCAATGGTTTATATGATCGAGGCACCCAGCTTCAAGTCACGCAGATTCGTGC
Intron 2 GTAAGTATGA ... CATTCTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.6 | 4 | 19 | 25.2 |
| A2 | 66.36 | 18 | 33 | 38.6 |
| A3 | 64.29 | 11 | 22 | 18 |
| A4 | 78.38 | 4 | 22 | 7 |
| A5 | 85.33 | 2 | 13 | 10.4 |
| A6 | 100 | 0 | 8 | 6.2 |
| A7 | 57.84 | 10 | 12 | 16.2 |
| A8 | 89.68 | 1 | 12 | 5.4 |
| A9 | 68.61 | 8 | 17 | 18.2 |
| A10 | 78.43 | 7 | 24 | 27 |
>TRINITY_DN42550_c0_g1_i3 from sample A9 / Example spliced isoformCTATGGGACCACATTGCATCCAACATAAACCTGTACATGTCATCTTCAGAATTATCACAGCCGGTTGAAGTAAATGAGCAAGCAAAAGTTAGTTCTGAAGAGCAAGTGAAAAGGAGCTCTGAGAAACAGAATAAAAGGAATGTTGATGCAGAAACAAAGTCTAAAGGTGACAATGGAGCATCAGTTTCAGTTTTGACTCA
CACAGAGGTCAATGAACGACCTATTAAGTCCCATGAGAATCGACGAAAAAGGGGTTGGAACCCTTCTGATCATAAACCATTAAGAGAAGTAAAGGAAACACCGAGACAGCAAAAGCCCTGGGCACGCAGAGAGCGGTTTCGGGATGATGAAGGTCATTCGAACAAGAGAATGAGCTCACCTACAGGTGTGCATGCTCCCC
GACGACTTCTTCAATCTGCAGTACGAGAAGCAGTTGGTCCTAATGGGCCAGCTAATTCAAAACGATCAGAATCATCATCAAAGCGTCTGCGTTCAGTTGTTTCTACAACTGTTGAGAATTCGGATACATCATTGGATGGTGTTGAAGCCCATCAGAGGCCAAGGGCACTTGCAAAATCTTTGCCAGCTATGGCTGTTGCC
ATGAAGGCAGCAGCTGCAGCAGCTGAGGATGCAGCTAAGTTCAGGTCAGCAGGAAGTGTCTTTGATAGGCTGGGTAAAAGGATTGACAGTAGTTTGAATGGATTGCATGAAGTGGATGAAGAAGATATGCTGGATGATGGAAACAACATTGAAAACACAATAACAGCATCAGTGTATCAAGGGCATGAATATCAACAAAG
GACTCAAGTTCATAGTAGGTTAAGTAGAGGACTAACAGATGATGTAGCATTGATGGATAGTGAAAGCAATTATCCCTCAAATCCAGCTACTTATAACGAGGGATATGATGAGGTACAAGAAGATGCAAGGTACTCACGTCGTTATGCCAGTGTGTCAACAAGAAGAAAACAATTGGAAACCACAGAGAGTGATGGTATCT
CAAGGTTATCAAACTTTGAGAGGCAACCTATACAGGATCAAGAAAAACAAAAACCTCATGAGGAATCAGTTACTGTAAAGTATCGTCTGGCAGGGAACTCTGATGAAGTGGCAAGGGAAAGCAGAATGCAAAAGGCTTCATTATCTGAAGCCCCAAGTGCTTCGAGGAAAATTGTGAACATATCCGTGAATGTGAATACA
TGGAAGTCACCTCATTTCCAGTCAGCTAGGGATGCAGTTGACAGGGAAACAAGAACCTCTAATACAGATACAAAGATATTGTCTGATCACAATGAAATGGATATTGATGGCACTTTGCCTGAGAACTCTGAAATGCGGCTTCAAGCTGAAAGTGGTCAGATTGCCCCTGTGACCGATCCAAATAATATATCAGGTATGGA
TTATTGCAATGATGTCAGGAAGGGTACATCTTCAATTTCTGGTGTTAACACTTCAGTCCGACCCGAGGATGCAGATTCAAGGACAATTTTTGTTTCTAATGTTCACTTTGCAGCAACAAAAGAGGCAATAACTAAGCATTTCAGTCGTTGTGGAGAAGTGCTTAAAGTTATAATTCTAACTGATGCTGCAACTGGGCAGC
CGAAAGGGTCAGCATACATTGAATTCTCTTCAAGAGAAACAGCTGAAATCGCATTGACCTTGAACGAGACATCATTTATGTCACGGATGCTGAAGGTAGTGCGAAAAAATGCTTCACATGTTGAACCTTCTATCATTGCTCGCCCCCCATTACGTCGACCTCTTCAGTTTAGTGCCTGGCGTCCAAACCGAGCTGTATAT
GGCAGAGGCGTAGCTAGTACATACAGGAGAGGCTACAACGCAAGGCCTTTTGGTTCTCGCAGTCTACAATGGAGACGAGATACATCATCAGGTGGAACCTCTGACAATTCAGCTTCTTCTCTTAATGAACCTCAATCTGGAATGAACTCTGTTCCTGCATTTGGTGGAAATCCTGCTGGTCTAGCCTCTGCACAGTTGCC
ACGACCTCTTACTTATATCCGAAATGCTACAAAATCATCAAATGAGAACACTGGCAAGACCCAAGAGTAGTAGCTGCCCTGGTTGGAATGTGATGTTATACCAGAGCAATAAAAAGAGAATTTGCTACAAATGGCTATTCTTTTGTACGTGTATTTTGGAGACCCTACAAGCAATATGGTACACGACTGGGGAACGGTCT
TGCACAAGTACCATGTTCAAAACGGCATGCTAATATATCCAATTTAATGGAGCATCGTTTTACCCATATAACGAAGATAAAATAAAGAAGAGCATGCCGCATATAAAGGAGCTACAGGCTGATTACATTTTTCAAAAGGAATTGATGATTTGGAGGTGTATGTTTTGAAGTGTCTGGGATGGCATTGTACGACGATTGCT
GTATCTATGAGAAGCCTACAATAGTATTTGTTGGCGGCAGTATACCAGATACATCTGCTGCATTCTAAGAACATTCTGTTAAAAGATTTCATTTTTCTACTTCAGTTAGATGTCCTGTGTCGTAAATATGATTTGGTAGATCTTATTTCATATAATTTTTTAAGGTTATCAAGTTTACTGGATGGCACAAAACTTTGTTA
GTTTGGTAACTGTTTTCACATTATGCCTCGTACCGGCATTTGGTTTGACAATGCCGTTATGCTTTTGCTCTGCGTCCTTCTGAGAGTCAGCTCCAGTGTTTACTTTCTTTTCGAAGTAAAATAATGAATTTAATTTGCTCTTTTATATCGAACTACATTGACTAGAAAATTTGGCCGTGAAAATCACGAGTGAGTTGACT
TTAAACACATTAATCACCTGTTGAAACTCCATATATTTGTGTTGAGGTTGTATGTGGCTGGGCTGCAAGGAGGACGGGCTTATATGTAATGGAGATTGAAGTTTGAATCAACGAGCGGAGCTGAGTATGCCTATATACATGTGCAATGACATCTTAAAATATCGTTTTTTATTTTTTATTTTTTTTAAACAGAAACAGGT
GAACGGTTTATATTAGGCTGTGCAGAGCCTTTCAGTACAAAAAACAAAATCCAGCTCTCTGCATCAGAGGAAAATATCGTTTGACGCAGGCCACTGCTTAGGTATTTTTCACCATGCAATTCTTGTTCCTTTGCATTCTACATGTACAAGCC
>TRINITY_DN42550_c0_g1_i7 from sample A9 / Example unspliced isoform:GTAATAATTAACTCATGATAATTTGAGAGAGCAAAAACAAAGAAACGAGTAACTTTGCATGTATCCGGCGATATTAATCCATCTGCCCTTCGCATTCTCTGTGTTGAAACCTCTGGTTGAGGTTGCCGGGCTGTTTCTAGCTTCTCCGGCCGTCCAATTTTCACCGATTTTTTCTTTCGTTTTTTAAACCGAAAATCACA
GTTATTTTCGGCGGATTGCCAAAACCGTCTAGCAGACATTTGAGATCATATTTCATCTGTATCCGTATTTTGGGATGACAGCAGGGGAAGAGGGTATGGAAGCCTCTTCCGATCTGCTAAAGGGGAGGACCTTCTCCATAGACCTTTCGAGCGATGGCGCTGCGCGTTTGCGAGAGGCCGTCAAACAGAAGCTTGCAGAA
TTCATGGGCAGCTACACGGACGATGTTTTAGCGGAATATGTTGCTGTACTTGTTTGTCATGGAAAGCAACAGGATCAGGCAAAGAGAGACCTGGATGCATTTCTTGGCGATCACAGTGGTGCATTTGTGGCATGGCTATGGGACCACATTGCATCCAACATAAACCTGTACATGTCATCTTCAGAATTATCACAGCCGGT
TGAAGTAAATGAGCAAGCAAAAGTTAGTTCTGAAGAGCAAGTGAAAAGGAGCTCTGAGAAACAGAATAAAAGGAATGTTGATGCAGAAACAAAGTCTAAAGGTGACAATGGAGCATCAGTTTCAGTTTTGACTCACACAGAGGTCAATGAACGACCTATTAAGTCCCATGAGAATCGACGAAAAAGGGGTTGGAACCCTT
CTGATCATAAACCATTAAGAGAAGTAAAGGAAACACCGAGACAGCAAAgtaagtatgatgaaagagccgactctagagcagttcaaaattctcagtttaaaggcaagtcagtgttaaagagatcacattctccagAGCCCTGGGCACGCAGAGAGCGGTTTCGGGATGATGAAGGTCATTCGAACAAGAGAATGAGCTCA
CCTACAGGTGTGCATGCTCCCCGACGACTTCTTCAATCTGCAGTACGAGAAGCAGTTGGTCCTAATGGGCCAGCTAATTCAAAACGATCAGAATCATCATCAAAGCGTCTGCGTTCAGTTGTTTCTACAACTGTTGAGAATTCGGATACATCATTGGATGGTGTTGAAGCCCATCAGAGGCCAAGGGCACTTGCAAAATC
TTTGCCAGCTATGGCTGTTGCCATGAAGGCAGCAGCTGCAGCAGCTGAGGATGCAGCTAAGTTCAGGTCAGCAGGAAGTGTCTTTGATAGGCTGGGTAAAAGGATTGACAGTAGTTTGAATGGATTGCATGAAGTGGATGAAGAAGATATGCTGGATGATGGAAACAACATTGAAAACACAATAACAGCATCAGTGTATC
AAGGGCATGAATATCAACAAAGGACTCAAGTTCATAGTAGGTTAAGTAGAGGACTAACAGATGATGTAGCATTGATGGATAGTGAAAGCAATTATCCCTCAAATCCAGCTACTTATAACGAGGGATATGATGAGGTACAAGAAGATGCAAGGTACTCACGTCGTTATGCCAGTGTGTCAACAAGAAGAAAACAATTGGAA
ACCACAGAGAGTGATGGTATCTCAAGGTTATCAAACTTTGAGAGGCAACCTATACAGGATCAAGAAAAACAAAAACCTCATGAGGAATCAGTTACTGTAAAGTATCGTCTGGCAGGGAACTCTGATGAAGTGGCAAGGGAAAGCAGAATGCAAAAGGCTTCATTATCTGAAGCCCCAAGTGCTTCGAGGAAAATTGTGAA
CATATCCGTGAATGTGAATACATGGAAGTCACCTCATTTCCAGTCAGCTAGGGATGCAGTTGACAGGGAAACAAGAACCTCTAATACAGATACAAAGATATTGTCTGATCACAATGAAATGGATATTGATGGCACTTTGCCTGAGAACTCTGAAATGCGGCTTCAAGCTGAAAGTGGTCAGATTGCCCCTGTGACCGATC
CAAATAATATATCAGGTATGGATTATTGCAATGATGTCAGGAAGGGTACATCTTCAATTTCTGGTGTTAACACTTCAGTCCGACCCGAGGATGCAGATTCAAGGACAATTTTTGTTTCTAATGTTCACTTTGCAGCAACAAAAGAGGCAATAACTAAGCATTTCAGTCGTTGTGGAGAAGTGCTTAAAGTTATAATTCTA
ACTGATGCTGCAACTGGGCAGCCGAAAGGGTCAGCATACATTGAATTCTCTTCAAGAGAAACAGCTGAAATCGCATTGACCTTGAACGAGACATCATTTATGTCACGGATGCTGAAGGTAGTGCGAAAAAATGCTTCACATGTTGAACCTTCTATCATTGCTCGCCCCCCATTACGTCGACCTCTTCAGTTTAGTGCCTG
GCGTCCAAACCGAGCTGTATATGGCAGAGGCGTAGCTAGTACATACAGGAGAGGCTACAACGCAAGGCCTTTTGGTTCTCGCAGTCTACAATGGAGACGAGATACATCATCAGGTGGAACCTCTGACAATTCAGCTTCTTCTCTTAATGAACCTCAATCTGGAATGAACTCTGTTCCTGCATTTGGTGGAAATCCTGCTG
GTCTAGCCTCTGCACAGTTGCCACGACCTCTTACTTATATCCGAAATGCTACAAAATCATCAAATGAGAACACTGGCAAGACCCAAGAGTAGTAGCTGCCCTGGTTGGAATGTGATGTTATACCAGAGCAATAAAAAGAGAATTTGCTACAAATGGCTATTCTTTTGTACGTGTATTTTGGAGACCCTACAAGCAATATG
GTACACGACTGGGGAACGGTCTTGCACAAGTACCATGTTCAAAACGGCATGCTAATATATCCAATTTAATGGAGCATCGTTTTACCCATATAACGAAGATAAAATAAAGAAGAGCATGCCGCATATAAAGGAGCTACAGGCTGATTACATTTTTCAAAAGGAATTGATGATTTGGAGGTGTATGTTTTGAAGTGTCTGGG
ATGGCATTGTACGACGATTGCTGTATCTATGAGAAGCCTACAATAGTATTTGTTGGCGGCAGTATACCAGATACATCTGCTGCATTCTAAGAACATTCTGTTAAAAGATTTCATTTTTCTACTTCAGTTAGATGTCCTGTGTCGTAAATATGATTTGGTAGATCTTATTTCATATAATTTTTTAAGGTTATCAAGTTTAC
TGGATGGCACAAAACTTTGTTAGTTTGGTAACTGTTTTCACATTATGCCTCGTACCGGCATTTGGTTTGACAATGCCGTTATGCTTTTGCTCTGCGTCCTTCTGAGAGTCAGCTCCAGTGTTTACTTTCTTTTCGAAGTAAAATAATGAATTTAATTTGCTCTTTTATATCGAACTACATTGACTAGAAAATTTGGCCGT
GAAAATCACGAGTGAGTTGACTTTAAACACATTAATCACCTGTTGAAACTCCATATATTTGTGTTGAGGTTGTATGTGGCTGGGCTGCAAGGAGGACGGGCTTATATGTAATGGAGATTGAAGTTTGAATCAACGAGCGGAGCTGAGTATGCCTATATACATGTGCAATGACATCTTAAAATATCGTTTTTTATTTTTTA
TTTTTTTTAAACAGAAACAGGTGAACGGTTTATATTAGGCTGTGCAGAGCCTTTCAGTACAAAAAACAAAATCCAGCTCTCTGCATCAGAGGAAAATATCGTTTGACGCAGGCCACTGCTTAGGTATTTTTCACCATGCAATTCTTGTTCCTTTGCATTCTACATGTACAAGCC
Intron 3 GTAAACAGTG ... TTCATATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.13 | 26 | 0 | 5 |
| A2 | 35 | 26 | 3 | 14 |
| A3 | 25.93 | 20 | 1 | 7 |
| A4 | 28.57 | 25 | 0 | 10 |
| A5 | 28.57 | 10 | 0 | 4 |
| A6 | 22.22 | 63 | 0 | 18 |
| A7 | 27.42 | 45 | 0 | 17 |
| A8 | 22.22 | 49 | 0 | 14 |
| A9 | 17.81 | 60 | 0 | 13 |
| A10 | 21.28 | 37 | 5 | 10 |
>TRINITY_DN108324_c1_g1_i2 from sample A2 / Example spliced isoformCTTTTCCTTGAGAAAGTAATAATTAACTCATGATAATTTGAGAGAGCAAAAACAAAGAAACGAGTAACTTTGCATGTATCCGGCGATATTAATCCATCTGCCCTTCGCATTCTCTGTGTTGAAACCTCTGGTTGAGGTTGCCGGGCTGTTTCTAGCTTCTCCGGCCGTCCAATTTTCACCGATTTTTTCTTTCGTTTTTT
AAACCGAAAATCACAGTTATTTTCGGCGGATTGCCAAAACCGTCTAGCAGACATTTGAGATCATATTTCATCTGTATCCGTATTTTGGGATGACAGCAGGGGAAGAGGGTATGGAAGCCTCTTCCGATCTGCTAAAGGGGAGGACCTTCTCCATAGACCTTTCGAGCGATGGCGCTGCGCGTTTGCGAGAGGCCGTCAAA
CAGAAGCTTGCAGAATTCATGGGCAGCTACACGGACGATGTTTTAGCGGAATATGTTGCTGTACTTGTTTGTCATGGAAAGCAACAGGATCAGGCAAAGAGAGACCTGGATGCATTTCTTGGCGATCACAGTGGTGCATTTGTGGCATGGCTATGGGACCACATTGCATCCAACATAAACCTGTACATGTCATCTTCAGA
ATTATCACAGCCGGTTGAAGTAAATGAGCAAGCAAAAGTTAGTTCTGAAGAGCAAGTGAAAAGGAGCTCTGAGAAACAGAATAAAAGGAATGTTGATGCAGAAACAAAGTCTAAAGGTGACAATGGAGCATCAGTTTCAGTTTTGACTCACACAGAGGTCAATGAACGACCTATTAAGTCCCATGAGAATCGACGAAAAA
GGGGTTGGAACCCTTCTGATCATAAACCATTAAGAGAAGTAAAGGAAACACCGAGACAGCAAAGTAAGTATGATGAAAGAGCCGACTCTAGAGCAGTTCAAAATTCTCAGTTTAAAGGCAAGTCAGTGTTAAAGAGATCACATTCTCCAGAGCCCTGGGCACGCAGAGAGCGGTTTCGGGATGATGAAGGTCATTCGAAC
AAGAGAATGAGCTCACCTACAGGTGTGCATGCTCCCCGACGACTTCTTCAATCTGCAGTACGAGAAGCAGTTGGTCCTAATGGGCCAGCTAATTCAAAACGATCAGAATCATCATCAAAGCGTCTGCGTTCAGTTGTTTCTACAACTGTTGAGAATTCGGATGCAGCATTGGATGGTGTTGAAGCCCATCAGAGGCCAAG
GGCACTTGCAAAATCTTTGCCAGCTATGGCTGTTGCCATGAAGGCAGCAGCTGCAGCAGCTGAGGATGCAGCTAAGTTCAGGTCAGCAGGAAGTGTCTTTGATAGGCTGGGTAAAAGGATTGACAGTAGTTTGAATGGATTGCATGAAGTGGATGAAGAAGATATGCTGGATGATGGAAACAACATTGAAAACACAATAA
CAGCATCAGTGTATCAAGGGCATGAATATCAACAAAGGACTCAAGTTCATAGTAGGTTAAGTAGAGGACTAACAGATGATGTAGCATTGATGGATAGTGAAAGCAATTATCCCTCAAATCCAGCTACTTATAACGAGGGATATGATGAGGTACAAGAAGATGCAAGGTACTCACGTCGTTATGCCAGTGTGTCAACAAGA
AGAAAACAATTGGAAACCACAGAGAGTGATGGTATCTCAAGGTTATCAAACTTTGAGAGGCAACCTATACAGGATCAAGAAAAACAAAAACCTCATGAGGAATCAGTTACTGTAAAGTATCGTCTGGCAGGGAACTCTGATGAAGTGGCAAGGGAAAGCAGAATGCAAAAGGCTTCATTATCTGAAGCCCCAAGTGCTTC
GAGGAAAATTGTGAACATATCCGTGAATGTGAATACATGGAAGTCACCTCATTTCCAGTCAGCTAGGGATGCAGTTGACAGGGAAACAAGAACCTCTAATACAGATACAAAGATATTGTCTGATCACAATGAAATGGATATTGATGGCACTTTGCCTGAGAACTCTGAAATGCGGCTTCAAGCTGAAAGTGGTCAGATTG
CCCCTGTGACCGATCCAAATAATATATCAGGTATGGATTATTGCAATGATGTCAGGAAGGGTACATCTTCAATTTCTGGTGTTAACACTTCAGTCCGACCCGAGGATGCAGATTCAAGGACAATTTTTGTTTCTAATGTTCACTTTGCAGCAACAAAAGAGGCAATAACTAAGCATTTCAGTCGTTGTGGAGAAGTGCTT
AAAGTTATCATTCTAACTGATGCTGCAACTGGGCAGCCGAAAGGGTCAGCATACATTGAATTCTCTTCAAGAGAAACAGCTGAAATCGCATTGACCTTGAACGAGACATCATTTATGTCACGGATGCTGAAGGTAGTGCGAAAAAATGCTTCACATGTTGAACCTTCTATCATTGCTCGCCCCCCATTACGTCGACCTCT
TCAGTTTAGTGCCTGGCGTCCAAACCGAGCTGTATATGGCAGAGGCGTAGCTAGTACATACAGGAGAGGCTACAACGCAAGGCCTTTTGGTTCTCGCAGTCTACAATGGAGGCGAGATACATCATCAGGTGGAACCTCTGACAATTCAGCTTCTTCTCTTAATGAACCTCAATCTGGAATGAACTCTGTTCCTGCATTTG
GTGGAAATCCTGCTGGTCTAGCCTCTGCACAGTTGCCACGACCTCTTACTTATATCCGAAATGCTACAAAATCATCAAATGAGAACACTGGCAAGACCCAAGAGTAGTAGCTGCCCTGGTTGGAATGTGATGTTATACCAGAGCAATAAAAAGAGAATTTGCTACAAATGGCTATTCTTTTGTACGTGTATTTTGGAGAC
CCTACAAGCAATATGGTACACGACTGGGGAACGGTCTTGCACAAGTACCATGTTCAAAACGGCATGCTAATATATCCAATTTAATGGAGCATCGTTTTACCCATATAACAAAGATAAAATAAAGAAGAGCATGCCGCATATAAAGGAGCTACAGGCTGATTACATTTTTCAAAAGGAATTGATGATTTGGAGGTGTATGT
TTTGAAGTGTCTGGGATGGCATTGTACGACGATTGCTGTATCTATGAGAAGCCTACAATAGTATTTGTTGGCGGCAGTATACCAGATACATCTGCTGCATTCTAAGAACATTCTGTTAAAAGATTTCATTTTTCTACTTCAGTTAGATGTCCTGTGTCGTAAATATGATTTGGTAGATCTTATTTCATATAATTTTTTAA
GGTTATCAAGTTTACTGGATGGCACAAAACTTTGTTAGTTTGGTTTTCATATATGGCATTCTAACTGTTTTCACATTATGCCTCGTACCGGCATTTGGTTTGACAATGCCGTTATGCTTTTGCTCTGCGTCCTTCTGAGAGTCAGCTCCAGTGTTTACTTTCTTTTCGAAGTAAAATAATGAATTTAATTTGCTCTTTTA
TATCGAACTACATTGACTAGAAAATTTGGC
>TRINITY_DN108324_c1_g1_i1 from sample A2 / Example unspliced isoform:GGCAGCCGAAAGGgtaaacagtgatttcattggcttgattgattctctgagcactgcgatgtatatattatatttactttgcttaactaatgtgttttttgcatggaactgtaaagctagtatctctggtttctaacttttgtcctttcatatcagGTCAGCATACATTGAATTCTCTTCAAGAGAAACAGCTGAAATCG
CATTGACCTTGAACGAGACATCATTTATGTCACGGATGCTGAAGGTAGTGCGAAAAAATGCTTCACATGTTGAACCTTCTATCATTGCTCGCCCCCCATTACGTCGACCTCTTCAGTTTAGTGCCTGGCGTCCAAACCGAGCTGTATATGGCAGAGGCGTAGCTAGTACATACAGGAGAGGCTACAACGCAAGGCCTTTT
GGTTCTCGCAGTCTACAATGGAGGCGAGATACATCATCAGGTGGAACCTCTGACAATTCAGCTTCTTCTCTTAATGAACCTCAATCTGGAATGAACTCTGTTCCTGCATTTGGTGGAAATCCTGCTGGTCTAGCCTCTGCACAGTTGCCACGACCTCTTACTTATATCCGAAATGCTACAAAATCATCAAATGAGAACAC
TGGCAAGACCCAAGAGTAGTAGCTGCCCTGGTTGGAATGTGATGTTATACCAGAGCAATAAAAAGAGAATTTGCTACAAATGGCTATTCTTTTGTACGTGTATTTTGGAGACCCTACAAGCAATATGGTACACGACTGGGGAACGGTCTTGCACAAGTACCATGTTCAAAACGGCATGCTAATATATCCAATTTAATGGA
GCATCGTTTTACCCATATAACAAAGATAAAATAAAGAAGAGCATGCCGCATATAAAGGAGCTACAGGCTGATTACATTTTTCAAAAGGAATTGATGATTTGGAGGTGTATGTTTTGAAGTGTCTGGGATGGCATTGTACGACGATTGCTGTATCTATGAGAAGCCTACAATAGTATTTGTTGGCGGCAGTATACCAGATA
CATCTGCTGCATTCTAAGAACATTCTGTTAAAAGATTTCATTTTTCTACTTCAGTTAGATGTCCTGTGTCGTAAATATGATTTGGTAGATCTTATTTCATATAATTTTTTAAGGTTATCAAGTTTACTGGATGGCACAAAACTTTGTTAGTTTGGTTTTCATATATGGCATTCTAACTGTTTTCACATTATGCCTCGTAC
CGGCATTTGGTTTGACAATGCCGTTATGCTTTTGCTCTGCGTCCTTCTGAGAGTCAGCTCCAGTGTTTACTTTCTTTTCGAAGTAAAATAATGAATTTAATTTGCTCTTTTATATCGAACTACATTGACTAGAAAATTTGGC
Intron 4 GTAAGTGCTG ... GGATGCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.32 | 42 | 1 | 15 |
| A2 | 12 | 22 | 9 | 3 |
| A3 | 33.33 | 26 | 0 | 13 |
| A4 | 19.35 | 25 | 2 | 6 |
| A5 | 33.33 | 6 | 1 | 3 |
| A6 | 15.79 | 64 | 2 | 12 |
| A7 | 21.21 | 26 | 1 | 7 |
| A8 | 9.43 | 48 | 4 | 5 |
| A9 | 24.19 | 47 | 1 | 15 |
| A10 | 42 | 29 | 0 | 21 |
>TRINITY_DN46918_c0_g1_i8 from sample A7 / Example spliced isoformATTAACTCATGATAATTTGAGAGAGCAAAAACAAAGAAACGAGTAACTTTGCATGTATCCGGCGATATTAATCCATCTGCCCTTCGCATTCTCTGTGTTGAAACCTCTGGTTGAGGTTGCCGGGCTGTTTCTAGCTTCTCCGGCCGTCCAATTTTCACCGATTTTTTCTTTCGTTTTTTAAACCGAAAATCACAGTTATT
TTCGGCGGATTGCCAAAACCGTCTAGCAGACATTTGAGATCATATTTCATCTGTATCCGTATTTTGGGATGACAGCAGGGGAAGAGGGTATGGAAGCCTCTTCCGATCTGCTAAAGGGGAGGACCTTCTCCATAGACCTTTCGAGCGATGGCGCTGCGCGTTTGCGAGAGGCCGTCAAACAGAAGCTTGCAGAATTCATG
GGCAGCTACACGGACGATGTTTTAGCGGAATATGTTGCTGTACTTGTTTGTCATGGAAAGCAACAGGATCAGGCAAAGAGAGACCTGGATGCATTTCTTGGCGATCACAGTGGTGCATTTGTGGCATGGCTATGGGACCACATTGCATCCAACATAAACCTGTACATGTCATCTTCAGAATTATCACAGCCGGTTGAAGT
AAATGAGCAAGCAAAAGTTAGTTCTGAAGAGCAAGTGAAAAGGAGCTCTGAGAAACAGAATAAAAGGAATGTTGATGCAGAAACAAAGTCTAAAGGTGACAATGGAGCATCAGTTTCAGTTTTGACTCACACAGAGGTCAATGAACGACCTATTAAGTCCCATGAGAATCGACGAAAAAGGGGTTGGAACCCTTCTGATC
ATAAACCATTAAGAGAAGTAAAGGAAACACCGAGACAGCAAAGTAAGTATGATGAAAGAGCCGACTCTAGAGCAGTTCAAAATTCTCAGTTTAAAGGCAAGTCAGTGTTAAAGAGATCACATTCTCCAGAGCCCTGGGCACGCAGAGAGCGGTTTCGGGATGATGAAGGTCATTCGAACAAGAGAATGAGCTCACCTACA
GGTGTGCATGCTCCCCGACGACTTCTTCAATCTGCAGTACGAGAAGCAGTTGGTCCTAATGGGCCAGCTAATTCAAAACGATCAGAATCATCATCAAAGCGTCTGCGTTCAGTTGTTTCTACAACTGTTGAGAATTCGGATGCAGCATTGGATGGTGTTGAAGCCCATCAGAGGCCAAGGGCACTTGCAAAATCTTTGCC
AGCTATGGCTGTTGCCATGAAGGCAGCAGCTGCAGCAGCTGAGGATGCAGCTAAGTTCAGGTCAGCAGGAAGTGTCTTTGATAGGCTGGGTAAAAGGATTGACAGTAGTTTGAATGGATTGCATGAAGTGGATGAAGAAGATATGCTGGATGATGGAAACAACATTGAAAACACAATAACAGCATCAGTGTATCAAGGGC
ATGAATATCAACAAAGGACTCAAGTTCATAGTAGGTTAAGTAGAGGACTAACAGATGATGTAGCATTGATGGATAGTGAAAGCAATTATCCCTCAAATCCAGCTACTTATAACGAGGGATATGATGAGGTACAAGAAGATGCAAGGTACTCACGTCGTTATGCCAGTGTGTCAACAAGAAGAAAACAATTGGAAACCACA
GAGAGTGATGGTATCTCAAGGTTATCAAACTTTGAGAGGCAACCTATACAGGATCAAGAAAAACAAAAACCTCATGAGGAATCAGTTACTGTAAAGTATCGTCTGGCAGGGAACTCTGATGAAGTGGCAAGGGAAAGCAGAATGCAAAAGGCTTCATTATCTGAAGCCCCAAGTGCTTCGAGGAAAATTGTGAACATATC
CGTGAATGTGAATACATGGAAGTCACCTCATTTCCAGTCAGCTAGGGATGCAGTTGACAGGGAAACAAGAACCTCTAATACAGATACAAAGATATTGTCTGATCACAATGAAATGGATATTGATGGCACTTTGCCTGAGAACTCTGAAATGCGGCTTCAAGCTGAAAGTGGTCAGATTGCCCCTGTGACCGATCCAAATA
ATATATCAGGTATGGATTATTGCAATGATGTCAGGAAGGGTACATCTTCAATTTCTGGTGTTAACACTTCAGTCCGACCCGAGGATGCAGATTCAAGGACAATTTTTGTTTCTAATGTTCACTTTGCAGCAACAAAAGAGGCAATAACTAAGCATTTCAGTCGTTGTGGAGAAGTGCTTAAAGTTATCATTCTAACTGAT
GCTGCAACTGGGCAGCCGAAAGGGTCAGCATACATTGAATTCTCTTCAAGAGAAACAGCTGAAATCGCATTGACCTTGAACGAGACATCATTTATGTCACGGATGCTGAAGGTAGTGCGAAAAAATGCTTCACATGTTGAACCTTCTATCATTGCTCGCCCCCCATTACGTCGACCTCTTCAGTTTAGTGCCTGGCGTCC
AAACCGAGCTGTATATGGCAGAGGCGTAGCTAGTACATACAGGAGAGGCTACAACGCAAGGCCTTTTGGTTCTCGCAGTCTACAATGGAGGCGAGATACATCATCAGGTGGAACCTCTGACAATTCAGCTTCTTCTCTTAATGAACCTCAATCTGGAATGAACTCTGTTCCTGCATTTGGTGGAAATCCTGCTGGTCTAG
CCTCTGCACAGTTGCCACGACCTCTTACTTATATCCGAAATGCTACAAAATCATCAAATGAGAACACTGGCAAGACCCAAGAGTAGTAGCTGCCCTGGTTGGAATGTGATGTTATACCAGAGCAATAAAAAGAGAATTTGCTACAAATGGCTATTCTTTTGTACGTGTATTTTGGAGACCCTACAAGCAATATGGTACAC
GACTGGGGAACGGTCTTGCACAAGTACCATGTTCAAAACGGCATGCTAATATATCCAATTTAATGGAGCATCGTTTTACCCATATAACAAAGATAAAATAAAGAAGAGCATGCCGCATATAAAGGAGCTACAGGCTGATTACATTTTTCAAAAGGAATTGATGATTTGGAGGTGTATGTTTTGAAGTGTCTGGGATGGCA
TTGTACGACGATTGCTGTATCTATGAGAAGCCTACAATAGTATTTGTTGGCGGCAGTATACCAGATACATCTGCTGCATTCTAAGAACATTCTGTTAAAAGATTTCATTTTTCTACTTCAGTTAGATGTCCTGTGTCGTAAATATGATTTGGTAGATCTTATTTCATATCATTTTTTAAGGTTATCAAGTTTACTGGATG
GCACAAAACTTTGTTAGTTTGGTAACTGTTTTCACATTATGCCTCGTACCGGCATTTGGTTTGACAATGCCGTTATGCTTTTGCTCTGCGTCCTTCTGAGAGTCAGCTCCAGTGTTTACTTTCTTTTCGAAGTAAAATAATGAATTTAATTTGCTCTTTTATATCGAACTACATTGACTAGAAAATTTGGCCGTGAAAAT
CACGAGTGAGTTGACTTTAAACACATTAATCACCTGTTGAAACTCCATATATTTGTGTTGAGGTTGTATGTGGCTGGGCTGCAAGGAGGACGGGCTTATATGTAATGGAGATTGAAGTTTGAATCAACGAGCGGAGCTGAGTATGCCTATATACATGTGCAATGACATCTTAAAATATCGTTTTTTATTTTTTATTTTTT
TTAAACAGAAACAGGTGAACGGTTTATATTAGGCTGTGCAGAGCCTTTCAGTACAAAAAACAAAATCCAGCTCTCTGCATCAGAGGAAAATATCGTTTGACGCAGGCCACTGCTTAGGTATTTTTCACCATGCAATTCTTGTTCCTTTGCATTCTACATGTACAAGCTTTTTGAAATGATTGTTATTCTAAATAATGTTT
AAAAATACATCATGCAACTTGTTCATTTGCATTCTACATGTACAAGCCTTTTGAAATGATTGTCAATGGTTTATATGATCGAGGCACCCAGCTTCAAGTC
>TRINITY_DN46918_c0_g1_i5 from sample A7 / Example unspliced isoform:CTTTTTGTTCAGACCATCTATAATGCTGAATATACTAGCATGTTTTTGTACGTTTCATCTTTCCAAGTAATGGTAGTTGCTTTCATATTTATATAATACATTTCAAGAGTGAGAATTTTTATTTATTGCAGGTGTTAACACTTCAGTCCGACCCGAGGATGCAGATTCAAGGACAATTTTTGTTTCTAATgtaagtgctg
ggaacctgttctttttctacttttcttgttccttatttactagctaccaggggtatggcaccacacaatcccctttttagcacaatctaaatttttgtatttctgaaattttctcattgaaaaaatatttatttctttactgtgctttttatgacataaattttgttcattattcatgttgcaatctttgtatagcttga
gtgggcctaacagttaagaacatgtgttacctccttggaggtcacagtttcgaatcctaagcagtcaaaatgctgcacagaggggtcccttgttccaaaaacaatggggtctcaatgtctcatacatcaatttgttgtctggctattctattattattattattataaagattgccagcattactgttttaaaaatgatt
aaatccaggtggtttgatataatgtgtcacgccatcttagtggtagggagtctaaaatttcctccatgttggataggaaagattttatctgttggtttgagttagtttttaacttcccttttgttgatggatgctcagGTTCACTTTGCAGCAACAAAAGAGGCAATAACTAAGCATTTCAGTCGTTGTGGAGAAGTGCT
TAAAGTTATCATTCTAACTGATGCTGCAACTGGGCAGCCGAAAGGGTCAGCATACATTGAATTCTCTTCAAGAGAAACAGCTGAAATCGCATTGACCTTGAACGAGACATCATTTATGTCACGGATGCTGAAGGTAGTGCGAAAAAATGCTTCACATGTTGAACCTTCTATCATTGCTCGCCCCCCATTACGTCGACCTC
TTCAGTTTAGTGCCTGGCGTCCAAACCGAGCTGTATATGGCAGAGGCGTAGCTAGTACATACAGGAGAGGCTACAACGCAAGGCCTTTTGGTTCTCGCAGTCTACAATGGAGGCGAGATACATCATCAGGTGGAACCTCTGACAATTCAGCTTCTTCTCTTAATGAACCTCAATCTGGAATGAACTCTGTTCCTGCATTT
GGTGGAAATCCTGCTGGTCTAGCCTCTGCACAGTTGCCACGACCTCTTACTTATATCCGAAATGCTACAAAATCATCAAATGAGAACACTGGCAAGACCCAAGAGTAGTAGCTGCCCTGGTTGGAATGTGATGTTATACCAGAGCAATAAAAAGAGAATTTGCTACAAATGGCTATTCTTTTGTACGTGTATTTTGGAGA
CCCTACAAGCAATATGGTACACGACTGGGGAACGGTCTTGCACAAGTACCATGTTCAAAACGGCATGCTAATATATCCAATTTAATGGAGCATCGTTTTACCCATATAACAAAGATAAAATAAAGAAGAGCATGCCGCATATAAAGGAGCTACAGGCTGATTACATTTTTCAAAAGGAATTGATGATTTGGAGGTGTATG
TTTTGAAGTGTCTGGGATGGCATTGTACGACGATTGCTGTATCTATGAGAAGCCTACAATAGTATTTGTTGGCGGCAGTATACCAGATACATCTGCTGCATTCTAAGAACATTCTGTTAAAAGATTTCATTTTTCTACTTCAGTTAGATGTCCTGTGTCGTAAATATGATTTGGTAGATCTTATTTCATATCATTTTTTA
AGGTTATCAAGTTTACTGGATGGCACAAAACTTTGTTAGTTTGGTAACTGTTTTCACATTATGCCTCGTACCGGCATTTGGTTTGACAATGCCGTTATGCTTTTGCTCTGCGTCCTTCTGAGAGTCAGCTCCAGTGTTTACTTTCTTTTCGAAGTAAAATAATGAATTTAATTTGCTCTTTTATATCGAACTACATTGAC
TAGAAAATTTGGCCGTGAAAATCACGAGTGAGTTGACTTTAAACACATTAATCACCTGTTGAAACTCCATATATTTGTGTTGAGGTTGTATGTGGCTGGGCTGCAAGGAGGACGGGCTTATATGTAATGGAGATTGAAGTTTGAATCAACGAGCGGAGCTGAGTATGCCTATATACATGTGCAATGACATCTTAAAATAT
CGTTTTTTATTTTTTATTTTTTTTAAACAGAAACAGGTGAACGGTTTATATTAGGCTGTGCAGAGCCTTTCAGTACAAAAAACAAAATCCAGCTCTCTGCATCAGAGGAAAATATCGTTTGACGCAGGCCACTGCTTAGGTATTTTTCACCATGCAATTCTTGTTCCTTTGCATTCTACATGTACAAGCTTTTTGAAATG
ATTGTTATTCTAAATAATGTTTAAAAATACATCATGCAACTTGTTCATTTGCATTCTACATGTACAAGCCTTTTGAAATGATTGTCAATGGTTTATATGATCGAGGCACCCAGCTTCAAGTC
Intron 5 GTCAGTGGAT ... CTTCCCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 12 | 3 | 9 |
| A2 | 16.67 | 25 | 2 | 8 |
| A3 | 12.82 | 34 | 7 | 3 |
| A4 | 15.79 | 16 | 6 | 0 |
| A5 | 26.83 | 15 | 3 | 8 |
| A6 | 25 | 3 | 1 | 1 |
| A7 | 36.17 | 15 | 7 | 10 |
| A8 | 38.46 | 8 | 5 | 5 |
| A9 | 23.81 | 16 | 5 | 5 |
| A10 | 20.59 | 27 | 5 | 9 |
>TRINITY_DN46918_c0_g1_i2 from sample A7 / Example spliced isoformATTAACTCATGATAATTTGAGAGAGCAAAAACAAAGAAACGAGTAACTTTGCATGTATCCGGCGATATTAATCCATCTGCCCTTCGCATTCTCTGTGTTGAAACCTCTGGTTGAGGTTGCCGGGCTGTTTCTAGCTTCTCCGGCCGTCCAATTTTCACCGATTTTTTCTTTCGTTTTTTAAACCGAAAATCACAGTTATT
TTCGGCGGATTGCCAAAACCGTCTAGCAGACATTTGAGATCATATTTCATCTGTATCCGTATTTTGGGATGACAGCAGGGGAAGAGGGTATGGAAGCCTCTTCCGATCTGCTAAAGGGGAGGACCTTCTCCATAGACCTTTCGAGCGATGGCGCTGCGCGTTTGCGAGAGGCCGTCAAACAGAAGCTTGCAGAATTCATG
GGCAGCTACACGGACGATGTTTTAGCGGAATATGTTGCTGTACTTGTTTGTCATGGAAAGCAACAGGATCAGGCAAAGAGAGACCTGGATGCATTTCTTGGCGATCACAGTGGTGCATTTGTGGCATGGCTATGGGACCACATTGCATCCAACATAAACCTGTACATGTCATCTTCAGAATTATCACAGCCGGTTGAAGT
AAATGAGCAAGCAAAAGTTAGTTCTGAAGAGCAAGTGAAAAGGAGCTCTGAGAAACAGAATAAAAGGAATGTTGATGCAGAAACAAAGTCTAAAGGTGACAATGGAGCATCAGTTTCAGTTTTGACTCACACAGAGGTCAATGAACGACCTATTAAGTCCCATGAGAATCGACGAAAAAGGGGTTGGAACCCTTCTGATC
ATAAACCATTAAGAGAAGTAAAGGAAACACCGAGACAGCAAAGTAAGTATGATGAAAGAGCCGACTCTAGAGCAGTTCAAAATTCTCAGTTTAAAGGCAAGTCAGTGTTAAAGAGATCACATTCTCCAGAGCCCTGGGCACGCAGAGAGCGGTTTCGGGATGATGAAGGTCATTCGAACAAGAGAATGAGCTCACCTACA
GGTGTGCATGCTCCCCGACGACTTCTTCAATCTGCAGTACGAGAAGCAGTTGGTCCTAATGGGCCAGCTAATTCAAAACGATCAGAATCATCATCAAAGCGTCTGCGTTCAGTTGTTTCTACAACTGTTGAGAATTCGGATACATCATTGGATGGTGTTGAAGCCCATCAGAGGCCAAGGGCACTTGCAAAATCTTTGCC
AGCTATGGCTGTTGCCATGAAGGCAGCAGCTGCAGCAGCTGAGGATGCAGCTAAGTTCAGGTCAGCAGGAAGTGTCTTTGATAGGCTGGGTAAAAGGATTGACAGTAGTTTGAATGGATTGCATGAAGTGGATGAAGAAGATATGCTGGATGATGGAAACAACATTGAAAACACAATAACAGCATCAGTGTATCAAGGGC
ATGAATATCAACAAAGGACTCAAGTTCATAGTAGGTTAAGTAGAGGACTAACAGATGATGTAGCATTGATGGATAGTGAAAGCAATTATCCCTCAAATCCAGCTACTTATAACGAGGGATATGATGAGGTACAAGAAGATGCAAGGTACTCACGTCGTTATGCCAGTGTGTCAACAAGAAGAAAACAATTGGAAACCACA
GAGAGTGATGGTATCTCAAGGTTATCAAACTTTGAGAGGCAACCTATACAGGATCAAGAAAAACAAAAACCTCATGAGGAATCAGTTACTGTAAAGTATCGTCTGGCAGGGAACTCTGATGAAGTGGCAAGGGAAAGCAGAATGCAAAAGGCTTCATTATCTGAAGCCCCAAGTGCTTCGAGGAAAATTGTGAACATATC
CGTGAATGTGAATACATGGAAGTCACCTCATTTCCAGTCAGCTAGGGATGCAGTTGACAGGGAAACAAGAACCTCTAATACAGATACAAAGATATTGTCTGATCACAATGAAATGGATATTGATGGCACTTTGCCTGAGAACTCTGAAATGCGGCTTCAAGCTGAAAGTGGTCAGATTGCCCCTGTGACCGATCCAAATA
ATATATCAGGTGTTAACACTTCAGTCCGACCCGAGGATGCAGATTCAAGGACAATTTTTGTTTCTAATGTTCACTTTGCAGCAACAAAAGAGGCAATAACTAAGCATTTCAGTCGTTGTGGAGAAGTGCTTAAAGTTATCATTCTAACTGATGCTGCAACTGGGCAGCCGAAAGGGTCAGCATACATTGAATTCTCTTCA
AGAGAAACAGCTGAAATCGCATTGACCTTGAACGAGACATCATTTATGTCACGGATGCTGAAGGTAGTGCGAAAAAATGCTTCACATGTTGAACCTTCTATCATTGCTCGCCCCCCATTACGTCGACCTCTTCAGTTTAGTGCCTGGCGTCCAAACCGAGCTGTATATGGCAGAGGCGTAGCTAGTACATACAGGAGAGG
CTACAACGCAAGGCCTTTTGGTTCTCGCAGTCTACAATGGAGGCGAGATACATCATCAGGTGGAACCTCTGACAATTCAGCTTCTTCTCTTAATGAACCTCAATCTGGAATGAACTCTGTTCCTGCATTTGGTGGAAATCCTGCTGGTCTAGCCTCTGCACAGTTGCCACGACCTCTTACTTATATCCGAAATGCTACAA
AATCATCAAATGAGAACACTGGCAAGACCCAAGAGTAGTAGCTGCCCTGGTTGGAATGTGATGTTATACCAGAGCAATAAAAAGAGAATTTGCTACAAATGGCTATTCTTTTGTACGTGTATTTTGGAGACCCTACAAGCAATATGGTACACGACTGGGGAACGGTCTTGCACAAGTACCATGTTCAAAACGGCATGCTA
ATATATCCAATTTAATGGAGCATCGTTTTACCCATATAACAAAGATAAAATAAAGAAGAGCATGCCGCATATAAAGGAGCTACAGGCTGATTACATTTTTCAAAAGGAATTGATGATTTGGAGGTGTATGTTTTGAAGTGTCTGGGATGGCATTGTACGACGATTGCTGTATCTATGAGAAGCCTACAATAGTATTTGTT
GGCGGCAGTATACCAGATACATCTGCTGCATTCTAAGAACATTCTGTTAAAAGATTTCATTTTTCTACTTCAGTTAGATGTCCTGTGTCGTAAATATGATTTGGTAGATCTTATTTCATATCATTTTTTAAGGTTATCAAGTTTACTGGATGGCACAAAACTTTGTTAGTTTGGTTTTCATATATGGCATTCTAACTGTT
TTCACATTATGCCTCGTACCGGCATTTGGTTTGACAATGCCGTTATGCTTTTGCTCTGCGTCCTTCTGAGAGTCAGCTCCAGTGTTTACTTTCTTTTCGAAGTAAAATAATGAATTTAATTTGCTCTTTTATATCGAACTACATTGACTAGAAAATTTGGCCGTGAAAATCACGAGTGAGTTGACTTTAAACACATTAAT
CACCTGTTGAAACTCCATATATTTGTGTTGAGGTTGTATGTGGCTGGGCTGCAAGGAGGACGGGCTTATATGTAATGGAGATTGAAGTTTGAATCAACGAGCGGAGCTGAGTATGCCTATATACATGTGCAATGACATCTTAAAATATCGTTTTTTATTTTTTATTTTTTTTAAACAGAAACAGGTGAACGGTTTATATT
AGGCTGTGCAGAGCCTTTCAGTACAAAAAACAAAATCCAGCTCTCTGCATCAGAGGAAAATATCGTTTGACGCAGGCCACTGCTTAGGTATTTTTCACCATGCAATTCTTGTTCCTTTGCATTCTACATGTACAAGCTTTTTGAAATGATTGTTATTCTAAATAATGTTTAAAAATACATCATGCAACTTGTTCATTTGC
ATTCTACATGTACAAGCCTTTTGAAATGATTGTCAATGGTTTATATGATCGAGGCACCCAGCTTCAAGTC
>TRINITY_DN46918_c0_g1_i10 from sample A7 / Example unspliced isoform:ATTAACTCATGATAATTTGAGAGAGCAAAAACAAAGAAACGAGTAACTTTGCATGTATCCGGCGATATTAATCCATCTGCCCTTCGCATTCTCTGTGTTGAAACCTCTGGTTGAGGTTGCCGGGCTGTTTCTAGCTTCTCCGGCCGTCCAATTTTCACCGATTTTTTCTTTCGTTTTTTAAACCGAAAATCACAGTTATT
TTCGGCGGATTGCCAAAACCGTCTAGCAGACATTTGAGATCATATTTCATCTGTATCCGTATTTTGGGATGACAGCAGGGGAAGAGGGTATGGAAGCCTCTTCCGATCTGCTAAAGGGGAGGACCTTCTCCATAGACCTTTCGAGCGATGGCGCTGCGCGTTTGCGAGAGGCCGTCAAACAGAAGCTTGCAGAATTCATG
GGCAGCTACACGGACGATGTTTTAGCGGAATATGTTGCTGTACTTGTTTGTCATGGAAAGCAACAGGATCAGGCAAAGAGAGACCTGGATGCATTTCTTGGCGATCACAGTGGTGCATTTGTGGCATGGCTATGGGACCACATTGCATCCAACATAAACCTGTACATGTCATCTTCAGAATTATCACAGCCGGTTGAAGT
AAATGAGCAAGCAAAAGTTAGTTCTGAAGAGCAAGTGAAAAGGAGCTCTGAGAAACAGAATAAAAGGAATGTTGATGCAGAAACAAAGTCTAAAGGTGACAATGGAGCATCAGTTTCAGTTTTGACTCACACAGAGGTCAATGAACGACCTATTAAGTCCCATGAGAATCGACGAAAAAGGGGTTGGAACCCTTCTGATC
ATAAACCATTAAGAGAAGTAAAGGAAACACCGAGACAGCAAAGTAAGTATGATGAAAGAGCCGACTCTAGAGCAGTTCAAAATTCTCAGTTTAAAGGCAAGTCAGTGTTAAAGAGATCACATTCTCCAGAGCCCTGGGCACGCAGAGAGCGGTTTCGGGATGATGAAGGTCATTCGAACAAGAGAATGAGCTCACCTACA
GGTGTGCATGCTCCCCGACGACTTCTTCAATCTGCAGTACGAGAAGCAGTTGGTCCTAATGGGCCAGCTAATTCAAAACGATCAGAATCATCATCAAAGCGTCTGCGTTCAGTTGTTTCTACAACTGTTGgtcagtggatgtctatacgttgttatttaaaaaaaaactctcagtttcagtttatttttagagtggctta
gattgaaatttaagccttacaatccctttgtaatttcttcccgcagAGAATTCGGATACATCATTGGATGGTGTTGAAGCCCATCAGAGGCCAAGGGCACTTGCAAAATCTTTGCCAGCTATGGCTGTTGCCATGAAGGCAGCAGCTGCAGCAGCTGAGGATGCAGCTAAGTTCAGGTCAGCAGGAAGTGTCTTTGATAG
GCTGGGTAAAAGGATTGACAGTAGTTTGAATGGATTGCATGAAGTGGATGAAGAAGATATGCTGGATGATGGAAACAACATTGAAAACACAATAACAGCATCAGTGTATCAAGGGCATGAATATCAACAAAGGACTCAAGTTCATAGTAGGTTAAGTAGAGGACTAACAGATGATGTAGCATTGATGGATAGTGAAAGCA
ATTATCCCTCAAATCCAGCTACTTATAACGAGGGATATGATGAGGTACAAGAAGATGCAAGGTACTCACGTCGTTATGCCAGTGTGTCAACAAGAAGAAAACAATTGGAAACCACAGAGAGTGATGGTATCTCAAGGTTATCAAACTTTGAGAGGCAACCTATACAGGATCAAGAAAAACAAAAACCTCATGAGGAATCA
GTTACTGTAAAGTATCGTCTGGCAGGGAACTCTGATGAAGTGGCAAGGGAAAGCAGAATGCAAAAGGCTTCATTATCTGAAGCCCCAAGTGCTTCGAGGAAAATTGTGAACATATCCGTGAATGTGAATACATGGAAGTCACCTCATTTCCAGTCAGCTAGGGATGCAGTTGACAGGGAAACAAGAACCTCTAATACAGA
TACAAAGATATTGTCTGATCACAATGAAATGGATATTGATGGCACTTTGCCTGAGAACTCTGAAATGCGGCTTCAAGCTGAAAGTGGTCAGATTGCCCCTGTGACCGATCCAAATAATATATCAGGT