sp|O80567|LRP6B_ARATH ----> La-related protein 6B
Intron 1 GTATGCAATC ... AAGCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.64 | 1438.6 | 148.2 | 94.4 |
| A2 | 5.81 | 926.6 | 93.4 | 62.1 |
| A3 | 4.67 | 1087.4 | 129.2 | 58.2 |
| A4 | 6.57 | 1043.5 | 107 | 80.9 |
| A5 | 5.09 | 444.6 | 43.4 | 26.1 |
| A6 | 4.9 | 1411.5 | 154.9 | 81 |
| A7 | 5.54 | 2984.4 | 316.7 | 191.9 |
| A8 | 6.41 | 2471.6 | 239.4 | 192.4 |
| A9 | 5.77 | 2711.7 | 287 | 187.2 |
| A10 | 5.37 | 2423.6 | 234.7 | 151.6 |
>TRINITY_DN109947_c2_g1_i2 from sample A4 / Example spliced isoformCACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGC
AAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCG
TTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGA
GCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGG
CATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAAT
CTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCCGATCTAAATGATGGAGGAAACTG
GAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAGGGAGATGCGC
ATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTCACGATG
GGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTAGGTAGGGT
TATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTTTATTGAGG
CATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTTGCAACATTAGCTCTGATTAGATCTAATTCTATAATTGAATTATTGATGGTAGAAATAGGTATTTTCTTTTACAGCGATATAGAACATGTTTGAAAGAGAAAGATACCCATGAATCTTCCGAATATTTAACGCCACACTATTTCTTTTCA
GAAAGATCCGAGCATATTCCATATTCCTTATCGAAAAAATCTTATGGTCATGATATTCAAAGATTCAAATCGCCTTGTTTTTCCCAAAAAGATCCCAGCATATCCAATATTCCTGTTGGAAAAAATCCAATGGGCATTCTATTATCTGTCTAAGAACCAAATTGGGAGACAAC
>TRINITY_DN109947_c2_g1_i1 from sample A4 / Example unspliced isoform:CACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGC
AAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCG
TTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGA
GCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGG
CATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAAT
CTGGAGAAACTTTTTGGTACTGTTGGCAGgtatgcaatccaattaatgagtttctattcacgttaaaactatgaaatttttatggaccgttgctgttttctaaatgttactgctaagcttgcagTGTAAAACTTGTGC
Intron 2 GTAAATGAAA ... GTGGTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.85 | 267 | 98 | 18.5 |
| A2 | 25.66 | 168 | 58 | 11.5 |
| A3 | 22.09 | 134 | 38 | 14.5 |
| A4 | 28.7 | 159 | 64 | 15 |
| A5 | 27.19 | 83 | 31 | 5 |
| A6 | 26.56 | 224 | 81 | 16 |
| A7 | 22.14 | 545 | 155 | 49 |
| A8 | 25.22 | 602 | 203 | 58.5 |
| A9 | 25.8 | 509 | 177 | 45.5 |
| A10 | 23.29 | 481 | 146 | 37.5 |
>TRINITY_DN41185_c1_g5_i3 from sample A9 / Example spliced isoformCAAAGGGCGACTACCTACAAGAAATGAAAAATGGACACCGCATGACGGGTACGATTACAATCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGA
GGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAAAACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAG
GGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGCACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATAT
CACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTGGAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAAT
GATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAATAAAATCGATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACA
GAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTG
GGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCG
GAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTAACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAA
TCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAG
CTGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCGAATGGTCAAGTCCGTTCATCAGACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAA
TCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGA
TGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAG
GTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACGGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTC
TATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGCAAACTGGCTTTGATGATCTCCC
AAAAATATTTTTTATCACAACTGTTATGATTTTTG
>TRINITY_DN41185_c1_g5_i2 from sample A9 / Example unspliced isoform:CAAAGGGCGACTACCTACAAGAAATGAAAAATGGACACCGCATGACGGGTACGATTACAATCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGA
GGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAAAACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAG
GGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGCACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATAT
CACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTGGAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAAT
GATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAATAAAATCGATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACA
GAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTG
GGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCG
GAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTAACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAA
TCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGgtaaatgaaatgaaatagtgaattaaactttattcattattaattg
aagtagcaaattaacattcatatttatttgtaattgtgtaggaaaatagccttttcacatgttgtgaaacccttgatgcaaattaaggttcataagctggattgtcattaacattctctagagttctatgatgtgccaatctcttaggttttcagtgcagggtccaaaaggaagttgatagaaatgctgtttatattatt
gtttctgagtgggcctaaaggttaagaacatttgtttcctcttaggaggtcacaggttcaaatctaggggtagggtatgtagacctctgtagactttagcagttacatcattgcttagaggagggtcctttctcccacaaataaggggatctcatacaccaaattggtgtccagcttgactgtgaccttaaaaataaatt
attattgttataactaagatgtatttgcgattatcctgacttgagctatggtggttgtagCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTGTAAGTTACAATGAACATATACAAACTATTAAGTGATACTATATATTGTATAGGATGAGAAAACTTTCATGTTTGTCTTTCATCTTCCGTTT
TATATTTTATTGTATTGGTAATCTGAACAGGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCGAATGGTCAAGTCCGTTCATCAGACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGA
CAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGA
AGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAG
AGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACGGATGCAGTGCACAA
ATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTAC
TTGTGCAAACTGGCTTTGATGATCTCCCAAAAATATTTTTTATCACAACTGTTATGATTTTTG
Intron 3 GTGAGTTTTG ... GATTGGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.23 | 1033 | 426.5 | 38 |
| A2 | 25.58 | 803 | 276 | 17 |
| A3 | 27.7 | 988 | 378.5 | 27 |
| A4 | 27.05 | 569 | 211 | 20 |
| A5 | 26.27 | 348 | 124 | 16 |
| A6 | 29.34 | 2305 | 957 | 82 |
| A7 | 27.57 | 4530 | 1724 | 153 |
| A8 | 27.32 | 4986 | 1873.5 | 211 |
| A9 | 27.2 | 4190 | 1565 | 140 |
| A10 | 28.44 | 3878 | 1541 | 116 |
>TRINITY_DN44241_c0_g1_i9 from sample A10 / Example spliced isoformTTTTAATGTAAAATCCTTTTCGCCGTCATTCCACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACT
GCCGATTAAATGCAGTAGACGTCTCGCGAGCAAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATG
TTCAGAGAATTTGAACGCGAGCGCAGAGGCGTTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTA
CGGAACATTCGCTTTCAGAGCAGGTTTTTGAGCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGAT
CCAGAAGGATTTGTTCCTATTCCGGTTGTGGCATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGA
AAATCTGCCAAATGATTACTCTATCCAAAATCTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAG
CTGTTGCCGATCTAAATGATGGAGGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCA
GACCGACATGATGAGTTTGAGCATCTACTTTTGAATAATCAGGGAGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGT
CAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTT
GTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTAGGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAAT
AGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTTTATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTTGCAACATTAAAAAAA
>TRINITY_DN44241_c0_g1_i10 from sample A10 / Example unspliced isoform:TGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAATCTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGGTAATGCATGCATATTGCTTG
ATGAAAGCTGAGTCATAACTTTTTTGGCAATTGTATTATAGTGTTGTAAAATGTATATATGTGAACAATGTGTGCTTGATAGATCACGGAGCTTTTCCTATGATGATTTTTGTAACTTAATTATATAGTGGTTCTGAGTGCTATAACTTGGGTGTCTTTTAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGC
TGAGAAAGCTGTAAGTCAATTTATAATTTGCATCGTTACCCCTACTTTGCGTTGTATTCATGGGTTTAAGTTCAATATGTTTGAATTCTGGAAAGGTTGCCGATCTAAATGATGGAGGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGTATTTCTGCTTTTATTTCTCTTTTGTATACATCTT
TTGTGTTATGTGAACAGTTGTGATTCAGCTTAAGTGTGTAAGTGCAATACTGATTGTCCCTGTACCAGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGAC
CGACATGATGAGTTTGAGgtgagttttgtgtttcttccttgagatgtgcccttgttttatgagaaccatctctactattgaggattcataaaagattggaaagCATCTACTTTTGAATAATCAGGGAGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGC
GTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGA
CTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTAGGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAAT
TGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTTTATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTTGCAACATTAAAAAAA
Intron 4 GTAATGCTTT ... GCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.09 | 1205.8 | 0 | 1 |
| A2 | 0.78 | 799.5 | 1 | 6 |
| A3 | 1.03 | 998.3 | 2 | 10 |
| A4 | 0.35 | 886.3 | 0 | 3 |
| A5 | 0 | 443.5 | 0 | 0 |
| A6 | 0.48 | 1271.5 | 1 | 6 |
| A7 | 0.44 | 2784 | 4 | 12 |
| A8 | 0.36 | 1977.5 | 2 | 7 |
| A9 | 0.14 | 2296 | 0 | 3 |
| A10 | 0.59 | 2238.3 | 0 | 13 |
>TRINITY_DN37274_c0_g2_i3 from sample A8 / Example spliced isoformCAGCTTTGGAATTGGTTCATTAGCTTGTTGTTATTAGCTTGTCTAGTCTGAAACATGGCTTTTTGCTTCATTAGAGGTTCCCTTTAACCCGGAAACTGTTGTTCTTGCATATGTTGATTTACTAAAACTTTGATTCACATGTATTACTAAAATTGTAGTTTAGAGTATTAGTCCATGTTAATGAAACACAATTTCAAACA
ATAAACAATACATTCAACTTAGAGAATAGAATATGCAGTAGAATATAGTGAAAGCCGGATGAATGTTTTGGAGTGCAGAATGGAACAATTTGGAAAATGATGTTTATTAGGGGTCATTAAAATCTTCTGAGATTGTCATTATACAAGTTAATGTGGTGTAGCAATAATATTTATAATGCAACGATTTGGTTCTACACATA
TTTTAGCTAAATTTTCAGGCACGCTTTAGAATGTCTATCTATGGTCACTTGAAGGTTCAACATGTCATAGAAAAAGAGTATCTGGGGGATTATGTTTGCAAGTGATTGTATCAATCGAGGGCAAGAATCTAGTATCAGATATCCCATGTATGCTTTTTCACATAAGATTTTTGGGCTTTAGCTGTATGTGTTTGTGTATT
TAAAAAAAATAACCTTACTGTACCTAGTAATCATATTTCAGAATCATAGATTGGTCTTTATTAGATTTCTGATACTTTTCTATGGGCCAGTTCCTATTCCGGTTGTGGCATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGAT
GGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAATCTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATC
CCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCCGATCTAAATGATGGAGGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTAC
ATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAGGGAGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGT
GGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTG
TAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTAGGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGT
ATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTTTATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTTGCAACG
>TRINITY_DN37274_c0_g2_i2 from sample A8 / Example unspliced isoform:CTGAGGACATCTTCACAACTGGTAAATTGCTGGACTTAAATAATTATAGGAATGTTTTCATTAGATGAAATATTAAATGAAGCTACAATAGTAATAATGAAAATTTCATAATTTATGGCATTTTACAAGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCA
GgtaatgctttgagtagcctgtctttgttttgcctcataacactaccagtattggcctagttcttatgcttgtttttcttagatatggtcaactgtgttatctattgcatgatttgcttttgcagTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAATCTGGAGAAACTTTTTGGTACTGTT
GGCAGGTATGCAATCCAATTAATGAGTTTCTATTCACGTTAAAACTATGAAATTTTTATGGACCGTTGCTGTTTTCTAAATGTTACTGCTAAGCTTGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGGTAATG
CATGCATATTGCTTGATGAAAGCTGAGTCATAACTTTTTTGGCAATTGTATTATAGTGTTGTAAAATGTATATATGTGAACAATGTGTGCTTGATAGATCACGGAGCTTTTCCTATGATGATTTTTGTAACTTAATTATATAGTGGTTCTGAGTGCTATAACTTGGGTGTCTTTTAGCTGCATGCACTTGTGGAGTATGA
GACTGTTGAACAAGCTGAGAAAGCTGTAAGTCAATTTATAATTTGCATCGTTACCCCTACTTTGCGTTGTATTCATGGGTTTAAGTTCAATATGTTTGAATTCTGGAAAGGTTGCCGATCTAAATGATGGAGGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGTATTTCTGCTTTTATTTCTC
TTTTGTATACATCTTTTGTGTTATGTGAACAGTTGTGATTCAGCTTAAGTGTGTAAGTGCAATACTGATTGTCCCTGTACCAGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACT
ACCCAGCATTCAGACCGACATGATGAGTTTGAGGTGAGTTTTGTGTTTCTTCCTTGAGATGTGCCCTTGTTTTATGAGAACCATCTCTACTATTGAGGATTCATAAAAGATTGGAAAGCATCTACTTTTGAATAATCAGGGAGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGG
GGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAG
ATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTAGGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATA
TTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTTTATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTT
GCAACG
Intron 5 GTAATCATTC ... CAATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.2 | 251 | 5 | 11 |
| A2 | 0.55 | 182 | 0 | 1 |
| A3 | 0.45 | 222 | 1 | 1 |
| A4 | 0.74 | 135 | 0 | 1 |
| A5 | 2.13 | 92 | 0 | 2 |
| A6 | 0 | 248 | 0 | 0 |
| A7 | 0.78 | 632 | 2 | 5 |
| A8 | 1.33 | 668 | 0 | 9 |
| A9 | 1.38 | 645 | 3 | 9 |
| A10 | 0.68 | 584 | 2 | 4 |
>TRINITY_DN41185_c1_g5_i1 from sample A9 / Example spliced isoformCAAAGGGCGACTACCTACAAGAAATGAAAAATGGACACCGCATGACGGGTACGATTACAATCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGA
GGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAAAACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAG
GGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGCACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATAT
CACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTGGAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAAT
GATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAATAAAATCGATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACA
GAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTG
GGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCG
GAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTAACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAA
TCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGGTAAATGAAATGAAATAGTGAATTAAACTTTATTCATTATTAATTG
AAGTAGCAAATTAACATTCATATTTATTTGTAATTGTGTAGGAAAATAGCCTTTTCACATGTTGTGAAACCCTTGATGCAAATTAAGGTTCATAAGCTGGATTGTCATTAACATTCTCTAGAGTTCTATGATGTGCCAATCTCTTAGGTTTTCAGTGCAGGGTCCAAAAGGAAGTTGATAGAAATGCTGTTTATATTATT
GTTTCTGAGTGGGCCTAAAGGTTAAGAACATTTGTTTCCTCTTAGGAGGTCACAGGTTCAAATCTAGGGGTAGGGTATGTAGACCTCTGTAGACTTTAGCAGTTACATCATTGCTTAGAGGAGGGTCCTTTCTCCCACAAATAAGGGGATCTCATACACCAAATTGGTGTCCAGCTTGACTGTGACCTTAAAAATAAATT
ATTATTGTTATAACTAAGATGTATTTGCGATTATCCTGACTTGAGCTATGGTGGTTGTAGCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCGAATGGTCAAGTCCGTTCATCAGACTAA
AGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTG
GTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGA
ACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTAT
AGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACGGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATA
GATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGCAAACTGGCTTTGATGATCTCCCAAAAATATTTTTTATCACAACTGTTATGATTTTTG
>TRINITY_DN41185_c1_g5_i7 from sample A9 / Example unspliced isoform:ATGCAGAAATCGAAGAATTGCAAgtaatcattctttattttactatttccaaagataattaccaatatggacctgctttttttatttttctttggcattgtgtgaatgcaccatagttatcgttcttccaatttgcagTCACGCACAGTTGTTGCAGAAAATCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAAT
ATTTGCCGGTGTTGGCAGGTATGTAATTAATGCCAGTTTGTCTTTACATGAATTTTCGATGATTCAATCAGTCTGGAGCTTGTTTGAGTAAAATATGTTGAAGTTCAAATACCATCTCTGCTTGGGCTGCTATACAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAG
ATATCCACGGACTGACATGCTCGTCAGTAACAAG
Intron 6 GTGAGTTTTG ... GAATAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.5 | 1125 | 426.8 | 125 |
| A2 | 23.85 | 881 | 276 | 87 |
| A3 | 26.15 | 1070 | 378.8 | 116 |
| A4 | 25.21 | 626 | 211 | 70 |
| A5 | 24.08 | 391 | 124 | 54 |
| A6 | 27.3 | 2548 | 957 | 313 |
| A7 | 25.71 | 4988 | 1726.1 | 553 |
| A8 | 25.49 | 5485.7 | 1875.9 | 718 |
| A9 | 25.22 | 4641.5 | 1565.7 | 519 |
| A10 | 26.94 | 4183.2 | 1542.4 | 423 |
>TRINITY_DN120486_c0_g2_i2 from sample A1 / Example spliced isoformCACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGC
AAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCG
TTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGA
GCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGG
CATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAAT
CTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCCGATCTAAATGATGGAGGAAACTG
GAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAGGGAGATGCGC
ATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTCACGATG
GGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTAGGTAGGGT
TATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTTTATTGAGG
CATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTTGCAAA
>TRINITY_DN120486_c0_g2_i4 from sample A1 / Example unspliced isoform:CACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGC
AAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCG
TTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGA
GCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGG
CATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAAT
CTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCCGATCTAAATGATGGAGGAAACTG
GAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAGgtgagttttg
tgtttcttccttgagatgtgcccttgttttatgagaaccatctctactattgaggattcataaaagattggaaagcatctacttttgaataatcagGGAGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGG
CCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTA
AACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTAGGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTAT
TACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTTTATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTTGCAAA
Intron 7 GTATGTAATT ... TGCTATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.16 | 261 | 12 | 5 |
| A2 | 2.22 | 198.3 | 6 | 3 |
| A3 | 2.96 | 213.3 | 6 | 7 |
| A4 | 1.61 | 152.7 | 2 | 3 |
| A5 | 3.66 | 92.3 | 2 | 5 |
| A6 | 1.01 | 245 | 2 | 3 |
| A7 | 0.78 | 696.3 | 2 | 9 |
| A8 | 1.5 | 689.3 | 15 | 6 |
| A9 | 2.03 | 628 | 19 | 7 |
| A10 | 1.8 | 546.3 | 4 | 16 |
>TRINITY_DN41185_c1_g5_i1 from sample A9 / Example spliced isoformCAAAGGGCGACTACCTACAAGAAATGAAAAATGGACACCGCATGACGGGTACGATTACAATCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGA
GGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAAAACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAG
GGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGCACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATAT
CACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTGGAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAAT
GATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAATAAAATCGATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACA
GAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTG
GGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCG
GAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTAACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAA
TCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGGTAAATGAAATGAAATAGTGAATTAAACTTTATTCATTATTAATTG
AAGTAGCAAATTAACATTCATATTTATTTGTAATTGTGTAGGAAAATAGCCTTTTCACATGTTGTGAAACCCTTGATGCAAATTAAGGTTCATAAGCTGGATTGTCATTAACATTCTCTAGAGTTCTATGATGTGCCAATCTCTTAGGTTTTCAGTGCAGGGTCCAAAAGGAAGTTGATAGAAATGCTGTTTATATTATT
GTTTCTGAGTGGGCCTAAAGGTTAAGAACATTTGTTTCCTCTTAGGAGGTCACAGGTTCAAATCTAGGGGTAGGGTATGTAGACCTCTGTAGACTTTAGCAGTTACATCATTGCTTAGAGGAGGGTCCTTTCTCCCACAAATAAGGGGATCTCATACACCAAATTGGTGTCCAGCTTGACTGTGACCTTAAAAATAAATT
ATTATTGTTATAACTAAGATGTATTTGCGATTATCCTGACTTGAGCTATGGTGGTTGTAGCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCGAATGGTCAAGTCCGTTCATCAGACTAA
AGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTG
GTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGA
ACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTAT
AGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACGGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATA
GATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGCAAACTGGCTTTGATGATCTCCCAAAAATATTTTTTATCACAACTGTTATGATTTTTG
>TRINITY_DN41185_c1_g5_i7 from sample A9 / Example unspliced isoform:ATGCAGAAATCGAAGAATTGCAAGTAATCATTCTTTATTTTACTATTTCCAAAGATAATTACCAATATGGACCTGCTTTTTTTATTTTTCTTTGGCATTGTGTGAATGCACCATAGTTATCGTTCTTCCAATTTGCAGTCACGCACAGTTGTTGCAGAAAATCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAAT
ATTTGCCGGTGTTGGCAGgtatgtaattaatgccagtttgtctttacatgaattttcgatgattcaatcagtctggagcttgtttgagtaaaatatgttgaagttcaaataccatctctgcttgggctgctatacagTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAG
ATATCCACGGACTGACATGCTCGTCAGTAACAAG
Intron 8 GTGAGTTTTG ... TTCATAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46 | 500 | 426 | 25 |
| A2 | 45.1 | 336 | 276 | 8 |
| A3 | 45.93 | 445 | 378 | 13 |
| A4 | 46.27 | 245 | 211 | 8 |
| A5 | 44.93 | 152 | 124 | 6 |
| A6 | 45.51 | 1146 | 957 | 43 |
| A7 | 45.15 | 2091 | 1721 | 68 |
| A8 | 44.57 | 2326 | 1870 | 105 |
| A9 | 45.32 | 1887 | 1564 | 55 |
| A10 | 45.33 | 1856 | 1539 | 71 |
>TRINITY_DN120486_c0_g2_i6 from sample A1 / Example spliced isoformCACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGC
AAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCG
TTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGA
GCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGG
CATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAAT
CTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCCGATCTAAATGATGGAGGAAACTG
GAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAGATTGGAAAGC
ATCTACTTTTGAATAATCAGGGAGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGA
ATGCCAGATGGAACCCGGGGCTTCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATAC
TATTTTGATAGAGGCTTTGTTAGGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCAT
TTTGTAATCTACTGCAAGATTTTATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTTGCAAA
>TRINITY_DN120486_c0_g2_i4 from sample A1 / Example unspliced isoform:CACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGC
AAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCG
TTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGA
GCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGG
CATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAAT
CTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCCGATCTAAATGATGGAGGAAACTG
GAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAGgtgagttttg
tgtttcttccttgagatgtgcccttgttttatgagaaccatctctactattgaggattcataaaagATTGGAAAGCATCTACTTTTGAATAATCAGGGAGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGG
CCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTA
AACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTAGGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTAT
TACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTTTATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTTGCAAA
Intron 9 GTAAGTTACA ... ATCTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.32 | 164.5 | 1 | 62 |
| A2 | 26.91 | 118.5 | 0 | 40 |
| A3 | 31.63 | 116 | 2 | 51 |
| A4 | 32.4 | 117 | 9 | 53 |
| A5 | 35.62 | 60 | 0 | 31 |
| A6 | 33.61 | 185.5 | 5 | 88 |
| A7 | 33.5 | 506.5 | 6 | 243 |
| A8 | 33.31 | 536.5 | 5 | 258 |
| A9 | 33.48 | 473.5 | 9 | 228 |
| A10 | 31.07 | 390 | 1 | 166 |
>TRINITY_DN41185_c1_g5_i1 from sample A9 / Example spliced isoformCAAAGGGCGACTACCTACAAGAAATGAAAAATGGACACCGCATGACGGGTACGATTACAATCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGA
GGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAAAACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAG
GGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGCACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATAT
CACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTGGAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAAT
GATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAATAAAATCGATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACA
GAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTG
GGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCG
GAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTAACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAA
TCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGGTAAATGAAATGAAATAGTGAATTAAACTTTATTCATTATTAATTG
AAGTAGCAAATTAACATTCATATTTATTTGTAATTGTGTAGGAAAATAGCCTTTTCACATGTTGTGAAACCCTTGATGCAAATTAAGGTTCATAAGCTGGATTGTCATTAACATTCTCTAGAGTTCTATGATGTGCCAATCTCTTAGGTTTTCAGTGCAGGGTCCAAAAGGAAGTTGATAGAAATGCTGTTTATATTATT
GTTTCTGAGTGGGCCTAAAGGTTAAGAACATTTGTTTCCTCTTAGGAGGTCACAGGTTCAAATCTAGGGGTAGGGTATGTAGACCTCTGTAGACTTTAGCAGTTACATCATTGCTTAGAGGAGGGTCCTTTCTCCCACAAATAAGGGGATCTCATACACCAAATTGGTGTCCAGCTTGACTGTGACCTTAAAAATAAATT
ATTATTGTTATAACTAAGATGTATTTGCGATTATCCTGACTTGAGCTATGGTGGTTGTAGCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCGAATGGTCAAGTCCGTTCATCAGACTAA
AGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTG
GTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGA
ACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTAT
AGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACGGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATA
GATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGCAAACTGGCTTTGATGATCTCCCAAAAATATTTTTTATCACAACTGTTATGATTTTTG
>TRINITY_DN41185_c1_g5_i2 from sample A9 / Example unspliced isoform:CAAAGGGCGACTACCTACAAGAAATGAAAAATGGACACCGCATGACGGGTACGATTACAATCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGA
GGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAAAACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAG
GGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGCACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATAT
CACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTGGAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAAT
GATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAATAAAATCGATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACA
GAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTG
GGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCG
GAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTAACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAA
TCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGGTAAATGAAATGAAATAGTGAATTAAACTTTATTCATTATTAATTG
AAGTAGCAAATTAACATTCATATTTATTTGTAATTGTGTAGGAAAATAGCCTTTTCACATGTTGTGAAACCCTTGATGCAAATTAAGGTTCATAAGCTGGATTGTCATTAACATTCTCTAGAGTTCTATGATGTGCCAATCTCTTAGGTTTTCAGTGCAGGGTCCAAAAGGAAGTTGATAGAAATGCTGTTTATATTATT
GTTTCTGAGTGGGCCTAAAGGTTAAGAACATTTGTTTCCTCTTAGGAGGTCACAGGTTCAAATCTAGGGGTAGGGTATGTAGACCTCTGTAGACTTTAGCAGTTACATCATTGCTTAGAGGAGGGTCCTTTCTCCCACAAATAAGGGGATCTCATACACCAAATTGGTGTCCAGCTTGACTGTGACCTTAAAAATAAATT
ATTATTGTTATAACTAAGATGTATTTGCGATTATCCTGACTTGAGCTATGGTGGTTGTAGCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTgtaagttacaatgaacatatacaaactattaagtgatactatatattgtataggatgagaaaactttcatgtttgtctttcatcttccgttt
tatattttattgtattggtaatctgaacagGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCGAATGGTCAAGTCCGTTCATCAGACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGA
CAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGA
AGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAG
AGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACGGATGCAGTGCACAA
ATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTAC
TTGTGCAAACTGGCTTTGATGATCTCCCAAAAATATTTTTTATCACAACTGTTATGATTTTTG
Intron 10 GTAATGCATG ... TGTCTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.75 | 1063.7 | 157.7 | 4 |
| A2 | 11.37 | 683.7 | 88.4 | 4 |
| A3 | 11.36 | 782.4 | 100.8 | 6 |
| A4 | 14.7 | 726.6 | 129.4 | 4 |
| A5 | 14.32 | 318.6 | 53.8 | 2 |
| A6 | 12.29 | 1261.9 | 177.6 | 9 |
| A7 | 12.51 | 2531.2 | 362.4 | 21 |
| A8 | 11.83 | 2427.1 | 327.6 | 36 |
| A9 | 12.04 | 2608.2 | 359.6 | 29 |
| A10 | 12.05 | 2142.3 | 295 | 25 |
>TRINITY_DN104189_c0_g1_i6 from sample A3 / Example spliced isoformGACTTAAATAATTATAGGAATGTTTTCATTAGATGAAATATTAAATGAAGCTACATAGTAATAATGAAAATTTCATAATTTATGGCATTTTACAAGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAA
TGATTACTCTATCCAAAATCTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCCGATC
TAAATGATGGAGGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGAT
GAGTTTGAGGGAGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGG
AACCCGGGGCTTCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAG
AGGCTTTGTTAGGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTA
CTGCAAGATTTTATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTG
>TRINITY_DN104189_c0_g1_i1 from sample A3 / Example unspliced isoform:TTCCTATTCCGGTTGTGGCATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAAT
GATTACTCTATCCAAAATCTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGgtaatgcatgcatattgcttgatgaaagctgagtcataacttttttggcaattgtatta
tagtgttgtaaaatgtatatatgtgaacaatgtgtgcttgatagatcacggagcttttcctatgatgatttttgtaacttaattatatagtggttctgagtgctataacttgggtgtcttttagCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTAAGTCAATTTATAATTTGCATCGTTA
CCCCTACTTTGCGTTGTATTCATGGGTTTAAGTTCAATATGTTTGAATTCTGGAAAGGTTGCCGATCTAAATGATGGAGGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAA
CAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAG
Intron 11 GTAATGCTTT ... GCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.08 | 1316.3 | 0 | 1 |
| A2 | 0.68 | 880.8 | 1 | 6 |
| A3 | 0.9 | 1102 | 2 | 10 |
| A4 | 0.31 | 968 | 0 | 3 |
| A5 | 0 | 480 | 0 | 0 |
| A6 | 0.44 | 1367.8 | 1 | 6 |
| A7 | 0.4 | 3017.5 | 4 | 12 |
| A8 | 0.51 | 2157 | 2 | 11 |
| A9 | 0.12 | 2493.5 | 0 | 3 |
| A10 | 0.53 | 2426.8 | 0 | 13 |
>TRINITY_DN42944_c1_g2_i1 from sample A7 / Example spliced isoformCAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGCAA
GTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCGTT
GTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGAGC
AGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGGCA
TCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAATCT
GGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCCGATCTAAATGATGGAGGAAACTGGA
GAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAGGGAGATGCGCAT
CACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTCACGATGGG
TCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTAGGTAGGGTTA
TCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTTTATTGAGGCA
TCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTTGCAGAAAAA
>TRINITY_DN42944_c1_g2_i7 from sample A7 / Example unspliced isoform:CTGAGGACATCTTCACAACTGGTAAATTGCTGGACTTAAATGATTATAGGAATGTTTTCATTAGATGAAATATTAAATGAAGCTACAATAGTAATAATGAAAATTTCATAATTTATGGCATTTTACAAGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCA
GgtaatgctttgagtagcctgtctttgttttgcctcataacactaccagtattggcctagttcttatgcttgtttttcttagatatggtcaactgtgttatctgatattgcatgatttgcttttgcagTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAATCTGGAGAAACTTTTTGGTACT
GTTGGCAGGTATGCAATCCAATTAATGAGTTTCTATTCACGTTAAAACTATGAAATTTTTATGGACCGTTGCTGTTTTCTAAATGTTACTGCTAAGCTTGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGGTA
ATGCATGCATATTGCTTGATGAAAGCTGAGTCATAACTTTTTTGGCAATTGTATTATAGTGTTGTAAAATGTATATATGTGAACAATGTGTGCTTGATAGATCACGGAGCTTTTCCTATGATGATTTTTGTAACTTAATTATATAGTGGTTCTGAGTGCTATAACTTGGGTGTCTTTTAGCTGCATGCACTTGTGGAGTA
TGAGACTGTTGAACAAGCTGAGAAAGCTGTAAGTCAATTTATAATTTGCATCGTTACCCCTACTTTGCGTTGTATTCATGGGTTTAAGTTCAATATGTTTGAATTCTGGAAAGGTTGCCGATCTAAATGATGGAGGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGTATTTCTGCTTTTATTT
CTCTTTTGTATACATCTTTTGTGTTATGTGAACAGTTGTGATTCAGCTTAAGTGTGTAAGTGCAATACTGATTGTCCCTGTACCAGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTT
ACTACCCAGCATTCAGACCGACATGATGAGTTTGAGGTGAGTTTTGTGTTTCTTCCTTGAGATGTGCCCTTGTTTTATGAGAACCATCTCTACTATTGAGGATTCATAAAAGATTGGAAAGCATCTACTTTTGAATAATCAGGGAGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGAC
GGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCC
TAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTAGGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGA
ATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTTTATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAG
TTTGCAGAAAAA
Intron 12 GTATTTCTGC ... CCTGTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.84 | 1419.1 | 2 | 284 |
| A2 | 13.98 | 1021.1 | 12 | 164 |
| A3 | 17.09 | 1331.9 | 9 | 272 |
| A4 | 16.31 | 909.1 | 3 | 175 |
| A5 | 13.5 | 512.1 | 4 | 79 |
| A6 | 17 | 2625.4 | 18 | 534 |
| A7 | 15.32 | 5574.3 | 27 | 1003 |
| A8 | 16.84 | 5523.7 | 43 | 1113 |
| A9 | 15.93 | 4710 | 45 | 885 |
| A10 | 16.87 | 4379.9 | 28 | 883 |
>TRINITY_DN104189_c0_g1_i6 from sample A3 / Example spliced isoformGACTTAAATAATTATAGGAATGTTTTCATTAGATGAAATATTAAATGAAGCTACATAGTAATAATGAAAATTTCATAATTTATGGCATTTTACAAGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAA
TGATTACTCTATCCAAAATCTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCCGATC
TAAATGATGGAGGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGAT
GAGTTTGAGGGAGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGG
AACCCGGGGCTTCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAG
AGGCTTTGTTAGGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTA
CTGCAAGATTTTATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTG
>TRINITY_DN104189_c0_g1_i2 from sample A3 / Example unspliced isoform:GGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAATCTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCC
AAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTAAGTCAATTTATAATTTGCATCGTTACCCCTACTTTGCGTTGTATTCATGGGTTTAAGTTCAATATGTTTGAATTCTGGAAAGGTTGCCGATCTAAATGATGG
AGGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGgtatttctgcttttatttctcttttgtatacatcttttgtgttatgtgaacagttgtgattcagcttaagtgtgtaagtgcaatactgattgtccctgtaccagGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGA
TGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAG
Intron 13 GTAAGTCAAT ... TTCTGGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.64 | 1204 | 66.1 | 147.7 |
| A2 | 11.51 | 887 | 48 | 137.1 |
| A3 | 11.41 | 1014 | 49.9 | 154.4 |
| A4 | 11.04 | 839 | 46.3 | 121.9 |
| A5 | 12.8 | 432 | 20.5 | 75.8 |
| A6 | 13.58 | 1799 | 84.7 | 343 |
| A7 | 13.44 | 3820 | 170.5 | 727.6 |
| A8 | 12.96 | 3499 | 172.9 | 633.4 |
| A9 | 12.43 | 3542 | 185.6 | 599.7 |
| A10 | 13.23 | 3009 | 166.1 | 549.4 |
>TRINITY_DN115655_c7_g3_i4 from sample A2 / Example spliced isoformACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCGTTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCG
CAGAGGCGTTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAG
GTTTTTGAGCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCC
GGTTGTGGCATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTA
TCCAAAATCTGGAGAAACTTTTTGGTACTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGATACGATTCAGGCCAAGTGTCAATAAAATCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCCGATCTAAATGATGGA
GGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAGAAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAGGG
AGATGCGCATCACCCAAATGAAAGAAACGGAGGAAGAAAAGGCAGGGGACGGGGACGGGGGAAACCTCGTGGGCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCTAATTGGCGCAGCATCAACAAGCAGTTCTACTAGCAGTGACGGTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCT
TCACGATGGGTCGTGGTAGGCCGCTCGCTGACAGTAATGTTTAGAACCAATTTTCCTAGATGAGCTATTTGGGACTTGGAAATCCGTGATTTCTCTACTGTAAACTATTTTTATTGTTTGCACCTAGTGAGTTTTCCAGTTTACAGCTCATCATTTGTTCTTCTTTGATCGAAGATACTATTTTGATAGAGGCTTTGTTA
GGTAGGGTTATCAAGTTGTCACCTCTTTCAAGAGAGGAGGTTTCTAAGCAGTAGGAATATTGTACAAATGTAATTGGTTTTAGTTTTTGGTCTGGAAAGTATTACAAGGCCACTGGAATGATCTAATTACACTAAAAATACAAATGAATGTGAAATAGTTGTGTAATGGCTTAAGCATTTTGTAATCTACTGCAAGATTT
TATTGAGGCATCAGTTAAGCTTTAATCCATATATATATGATAAGCTGATTCCCAAGTTTGCAACG
>TRINITY_DN115655_c7_g3_i2 from sample A2 / Example unspliced isoform:GGCAATTGTATTATAGTGTTGTAAAATGTATATATGTGAACAATGTGTGCTTGATAGATCACGGAGCTTTTCCTATGATGATTTTTGTAACTTAATTATATAGTGGTTCTGAGTGCTATAACTTGGGTGTCTTTTAGCTGCATGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTgtaagtcaatttata
atttgcatcgttacccctactttgcgttgtattcatgggtttaagttcaatatgtttgaattctggaaagGTTGCCGATCTAAATGATGGAGGAAACTGGAGAAGTGGTCTTCAAGTGCAACTGCTCTTAAAGCGGATGGGCAAGTATGGACACCAACCAAAAGGGCGGCAATTGGACAATGCTGATGTACATGGTGAAG
AAGAGGATGCAAACAACACATCTGACACAGGAAATGATAAACAATCAAAAGTTACTACCCAGCATTCAGACCGACATGATGAGTTTGAG
Intron 14 GTGTGTCAAT ... TGTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.33 | 225.3 | 0 | 54 |
| A2 | 13.36 | 214 | 1 | 33 |
| A3 | 14.23 | 217 | 0 | 36 |
| A4 | 6.68 | 139.7 | 0 | 10 |
| A5 | 17.51 | 70.7 | 0 | 15 |
| A6 | 12.41 | 480 | 0 | 68 |
| A7 | 15.54 | 886 | 5 | 163 |
| A8 | 14.28 | 1297 | 4 | 216 |
| A9 | 13.56 | 924 | 2 | 145 |
| A10 | 14.89 | 811.3 | 0 | 142 |
>TRINITY_DN41185_c1_g5_i1 from sample A9 / Example spliced isoformCAAAGGGCGACTACCTACAAGAAATGAAAAATGGACACCGCATGACGGGTACGATTACAATCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGA
GGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAAAACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAG
GGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGCACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATAT
CACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTGGAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAAT
GATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAATAAAATCGATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACA
GAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTG
GGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCG
GAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTAACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAA
TCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGGTAAATGAAATGAAATAGTGAATTAAACTTTATTCATTATTAATTG
AAGTAGCAAATTAACATTCATATTTATTTGTAATTGTGTAGGAAAATAGCCTTTTCACATGTTGTGAAACCCTTGATGCAAATTAAGGTTCATAAGCTGGATTGTCATTAACATTCTCTAGAGTTCTATGATGTGCCAATCTCTTAGGTTTTCAGTGCAGGGTCCAAAAGGAAGTTGATAGAAATGCTGTTTATATTATT
GTTTCTGAGTGGGCCTAAAGGTTAAGAACATTTGTTTCCTCTTAGGAGGTCACAGGTTCAAATCTAGGGGTAGGGTATGTAGACCTCTGTAGACTTTAGCAGTTACATCATTGCTTAGAGGAGGGTCCTTTCTCCCACAAATAAGGGGATCTCATACACCAAATTGGTGTCCAGCTTGACTGTGACCTTAAAAATAAATT
ATTATTGTTATAACTAAGATGTATTTGCGATTATCCTGACTTGAGCTATGGTGGTTGTAGCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCGAATGGTCAAGTCCGTTCATCAGACTAA
AGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTG
GTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGA
ACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTAT
AGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACGGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATA
GATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGCAAACTGGCTTTGATGATCTCCCAAAAATATTTTTTATCACAACTGTTATGATTTTTG
>TRINITY_DN41185_c1_g5_i5 from sample A9 / Example unspliced isoform:ATCTGAACGGCACGAGTTTATGgtgtgtcaattttctcttcattatgttttccattgtagaagttaaattcggatgtccagagcagaagttaaatagatattctgttttacagGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTGGTCAACTTAGTAGT
GGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGAACTTCATGTTTTAG
GGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTATAGAATCTGGAGATC
TGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACGGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATAGATAATATAAAAGA
AACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGCAAACTGGCTTTGATGATCTCCCAAAAATATTTTTTATCACAACTGTTATGATTTTTG
Intron 15 GTAAGAGAAC ... TATGGGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.01 | 1643 | 361 | 12 |
| A2 | 17 | 1162 | 238 | 6 |
| A3 | 18.53 | 1359 | 309 | 3 |
| A4 | 19.86 | 1259 | 312 | 10 |
| A5 | 18.45 | 685 | 155 | 4 |
| A6 | 14.92 | 1488 | 261 | 6 |
| A7 | 15.71 | 3320 | 619 | 19 |
| A8 | 16.56 | 2016 | 400 | 14 |
| A9 | 15.5 | 2808 | 515 | 22 |
| A10 | 18.34 | 2979 | 669 | 7 |
>TRINITY_DN109947_c2_g1_i1 from sample A4 / Example spliced isoformCACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGC
AAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCG
TTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGA
GCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGG
CATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAAT
CTGGAGAAACTTTTTGGTACTGTTGGCAGGTATGCAATCCAATTAATGAGTTTCTATTCACGTTAAAACTATGAAATTTTTATGGACCGTTGCTGTTTTCTAAATGTTACTGCTAAGCTTGCAGTGTAAAACTTGTGC
>TRINITY_DN109947_c2_g1_i3 from sample A4 / Example unspliced isoform:CACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGC
AAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCG
TTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGA
GCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGgtaagagaacttcagttc
tcttgagataggtctttgtcaattgccattcctatacatttacttttatggggtgaaaactgtgtgcatatctttatcttttctttcttgctagaagaaaatagtcaaatacttatcacaggcaggtattaacccaaaagtacatccaaaagtctgggcttgccagtagattggaaggctagaatcaatatgctacaatg
gcctgacacgagagatgatatttactgctacaaatgtctgaaatccttggggttccaaacaaaagcccttcctgcagacgttctaactagaaaccagaccaagaattttaaccagtgttggatgtggaatgaccattcttatctgattcttttctgctgcctctgataaataccttggaaacaggacactcgagcatgca
ttgctttatctatttgctccagtttatgcatgtagaccattggctgaaccattttttgattgtttggagctccgatcacatgttgtcttttcctgggcagacatttgttgtctggtagtcagctttggaattggttcattagcttgttgttattagcttgtctagtctgaaacatggctttttgcttcattagaggttcc
ctttaacccggaaactgttgttcttgcatatgttgatttactaaaactttgattcacatgtattactaaaattgtagtttagagtattagtccatgttaatgaaacacaatttcaaacaataaacaatacattcaacttagagaatagaatatgcagtagaatatagtgaaagccggatgaatgttttggagtgcagaat
ggaacaatttggaaaatgatgtttattaggggtcattaaaatcttctgagattgtcattatacaagttaatgtggtgtagcaataatatttataatgcaacgatttggttctacacatattttagctaaattttcaggcacgctttagaatgtctatctatggtcacttgaaggttcaacatgtcatagaaaaagagtat
ctgggggattatgtttgcaagtgattgtatcaatcgagggcaagaatctagtatcagatatcccatgtatgctttttcacataagatttttgggctttagctgtatgtgtttgtgtatttaaaaaaaataaccttactgtacctagtaatcatatttcagaatcatagattggtctttattagatttctgatacttttct
atgggccagTTCCTATTCCGGTTGTGGCATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTAAATTGCTGGACTTAAATAATTATAGGAATGTTTTCATTAGATGAAATATTAAATGAAGCTACAATAGTAATAATGAAAATTTCATAATTTATG
GCATTTTACAAGGTTGTAAGTGAAGATGGGC
Intron 16 GTAAATTGCT ... ATTTTACAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.01 | 1113.3 | 0.1 | 0 |
| A2 | 0.09 | 754.6 | 0.7 | 0 |
| A3 | 0 | 875.1 | 0 | 2.6 |
| A4 | 0.53 | 901.6 | 4.9 | 4 |
| A5 | 0 | 480 | 0 | 0 |
| A6 | 0.15 | 1177.3 | 1.9 | 2.7 |
| A7 | 0.08 | 2513.5 | 2.1 | 1.7 |
| A8 | 0.37 | 1602.9 | 6 | 4 |
| A9 | 0.13 | 2092.4 | 2.9 | 0.9 |
| A10 | 0.04 | 2250.5 | 1 | 0 |
>TRINITY_DN109947_c2_g1_i1 from sample A4 / Example spliced isoformCACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGC
AAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCG
TTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGA
GCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGG
CATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGGTTGTAAGTGAAGATGGGAAGAAAGTGAGGCGACTACACCCATTGGCAGATACTGACATTGAGGAGGTGCAGTCCCGAACTGTTGTTGCAGAAAATCTGCCAAATGATTACTCTATCCAAAAT
CTGGAGAAACTTTTTGGTACTGTTGGCAGGTATGCAATCCAATTAATGAGTTTCTATTCACGTTAAAACTATGAAATTTTTATGGACCGTTGCTGTTTTCTAAATGTTACTGCTAAGCTTGCAGTGTAAAACTTGTGC
>TRINITY_DN109947_c2_g1_i3 from sample A4 / Example unspliced isoform:CACAAAAGGAAACAAGGCCAACCCTTCGGGCTCCATATGACCAGGCGCTGAGCGGAACCTCTGTCTTTGAGCAGCGAGTTGGGCCTTTCTCGAAGCCGGGGCCAACCTTAACAACAGAGGAAAAGGCCTCAGTTGCTTCCCTAGGTCGTGGGTTCGGTTCCTGCGGACTGCCGATTAAATGCAGTAGACGTCTCGCGAGC
AAGTCTGAGGCAGCCGAAGATTTGTTTGCACAGGATCCATGGCGGAGCCAGTGGGAGACGATACCAAGACCTCTGAAAACCACCCCTCCGTGGATACCGAACCCATGGAAATCCATGGAGAAATTTCATCGGTTGAAACCCCAATGGACGATGGTCTCCTCGGGAAATGTTCAGAGAATTTGAACGCGAGCGCAGAGGCG
TTGTCGTCTTCGTCGACTGTTTCTGAAAAGAGCTCATCGTCGTCTTTGTCTTCGTTGGCTCTTCTTGAGAAAAGCTCATCGTCGAGCAAGCTTAACGCCCAAGCTCCCGTGTTCGTTCCCAGAGCGCAAGTCGCCGTTCACGTCGGAGGATCGATTCCCCCAAGTTTTACGGAACATTCGCTTTCAGAGCAGGTTTTTGA
GCAGGAGGTCTCGGCGTCCGAGGCGGAGAGCGCGGCTGCTCCCACTCCTTCGTCAAAGGCCGTTCTCACCGAGGAATTAAGACAAAAGGTCGTGAAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGATAAATATTTGATGAAGTTCGTGAAGAAGGATCCAGAAGGATTTGGTAAGAGAACTTCAGTTC
TCTTGAGATAGGTCTTTGTCAATTGCCATTCCTATACATTTACTTTTATGGGGTGAAAACTGTGTGCATATCTTTATCTTTTCTTTCTTGCTAGAAGAAAATAGTCAAATACTTATCACAGGCAGGTATTAACCCAAAAGTACATCCAAAAGTCTGGGCTTGCCAGTAGATTGGAAGGCTAGAATCAATATGCTACAATG
GCCTGACACGAGAGATGATATTTACTGCTACAAATGTCTGAAATCCTTGGGGTTCCAAACAAAAGCCCTTCCTGCAGACGTTCTAACTAGAAACCAGACCAAGAATTTTAACCAGTGTTGGATGTGGAATGACCATTCTTATCTGATTCTTTTCTGCTGCCTCTGATAAATACCTTGGAAACAGGACACTCGAGCATGCA
TTGCTTTATCTATTTGCTCCAGTTTATGCATGTAGACCATTGGCTGAACCATTTTTTGATTGTTTGGAGCTCCGATCACATGTTGTCTTTTCCTGGGCAGACATTTGTTGTCTGGTAGTCAGCTTTGGAATTGGTTCATTAGCTTGTTGTTATTAGCTTGTCTAGTCTGAAACATGGCTTTTTGCTTCATTAGAGGTTCC
CTTTAACCCGGAAACTGTTGTTCTTGCATATGTTGATTTACTAAAACTTTGATTCACATGTATTACTAAAATTGTAGTTTAGAGTATTAGTCCATGTTAATGAAACACAATTTCAAACAATAAACAATACATTCAACTTAGAGAATAGAATATGCAGTAGAATATAGTGAAAGCCGGATGAATGTTTTGGAGTGCAGAAT
GGAACAATTTGGAAAATGATGTTTATTAGGGGTCATTAAAATCTTCTGAGATTGTCATTATACAAGTTAATGTGGTGTAGCAATAATATTTATAATGCAACGATTTGGTTCTACACATATTTTAGCTAAATTTTCAGGCACGCTTTAGAATGTCTATCTATGGTCACTTGAAGGTTCAACATGTCATAGAAAAAGAGTAT
CTGGGGGATTATGTTTGCAAGTGATTGTATCAATCGAGGGCAAGAATCTAGTATCAGATATCCCATGTATGCTTTTTCACATAAGATTTTTGGGCTTTAGCTGTATGTGTTTGTGTATTTAAAAAAAATAACCTTACTGTACCTAGTAATCATATTTCAGAATCATAGATTGGTCTTTATTAGATTTCTGATACTTTTCT
ATGGGCCAGTTCCTATTCCGGTTGTGGCATCTTTCAGGAAAGTAAAAAGCATTGTTAGCAATCATTCATTGGTGGCAGTTGCACTGAGGACATCTTCACAACTGgtaaattgctggacttaaataattataggaatgttttcattagatgaaatattaaatgaagctacaatagtaataatgaaaatttcataatttatg
gcattttacaagGTTGTAAGTGAAGATGGGC