sp|Q940X9|LRP1A_ARATH ----> La-related protein 1A

Intron 1 GTATGGTATT ... ATAGGCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	57.65	36	42	56
A2	46.67	44	37	40
A3	55.78	44	50	61
A4	55	36	34	54
A5	41.63	61	41	46
A6	59.48	31	40	51
A7	49.5	76	54	95
A8	54.19	41	46	51
A9	61.11	42	59	73
A10	53.8	70	52	111

>TRINITY_DN48610_c4_g1_i5 from sample A7 / Example spliced isoform

GCAAAGGCTTCCCAAGTCCCGTTTCGTCTTCGGCCCCTACTCGATCGGGGGCGGCTAACCAATTGCAATAAATCTTGGACCAAATATTAGGTCTACGCTGTGGTGAGGATTGCGGAAAATTAGCTGATGGACGGAAGGCCATGAGACTCAAAAATTTCCCCTCATGCGGCGCACCACGCCATCAACAGGACAGGAGAGCA
GAACGTAAACATTATTTGCTCTTCTTCGCTGATTGCGATCGAAAGAGAAGGAGCCATGGATTGAATGAATGAGAGGGGAACGAACTGAGGTGGGAGCCAATGGAGTGTGCATCGTTGAGTAGGGCCGGCATGGACGGAGGAAGCCCAAGCCCAATCTCAATCCCATCTGCGAATGGTGGGAAGGTAAGGCCCTCCTCATG
GTCACTTGTGGTCCGCGGCCAGCCCTCGGCTGCGGCCGCCGCGACTGCCAATTCTGAAGAAATAGAAGGCCGAGTCCAGCAATCTGGGGAATCTGGTCCTTCAGGCATTGATGTTAATGATCACAGCAAGACAGAAGATTTGGTGCAAGTTATGGGAGGAGAAGATTGTTGGCCTGCACTTCAGGATGCCCGGAATTCTC
CCAAGACGTCATTGCCACAGGGATCGTCCACACAGGTTCACATATTAACATCTAACGTGAACTTTATACTTAGTGCATTGCGAAATTCAAGTGTAGTTGAAGTGAAGGTGAGCCTGACAAGATCAAGAGGCATGGTGACTGGTCAAAGTGGCTGTTACCTGATGGGGTTAACAATTCTACGATAGGAACTCAGCAACAAG
GCACCAGTGTTAAGACAGGCAATGTTGAAAAGGATGCTACATTGCATGGGCAAATAACAATTGTTTCATCAGGGCATCTTATTGAATCTCCCTTAGCAGCAAATGGAGTTCAAAGTGAAGTTTCATCTAAATTGGAGACAGCTTCAGGTCATGG

>TRINITY_DN48610_c4_g1_i4 from sample A7 / Example unspliced isoform:

GCAAAGGCTTCCCAAGTCCCGTTTCGTCTTCGGCCCCTACTCGATCGGGGGCGGCTAACCAATTGCAATAAATCTTGGACCAAATATTAGGTCTACGCTGTGGTGAGGATTGCGGAAAATTAGCTGATGGACGGAAGGCCATGAGACTCAAAAATTTCCCCTCATGCGGCGCACCACGCCATCAACAGGACAGGAGAGCA
GAACGTAAACATTATTTGCTCTTCTTCGCTGATTGCGATCGAAAGAGAAGGAGCCATGGATTGAATGAATGAGAGGGGAACGAACTGAGGTGgtatggtatttatatatatgtggggttaagttggtattggttaggatttgtttatcgtatttgttattgatattgataggcgcagGGAGCCAATGGAGTGTGCATCGT
TGAGTAGGGCCGGCATGGACGGAGGAAGCCCAAGCCCAATCTCAATCCCATCTGCGAATGGTGGGAAGGTAAGGCCCTCCTCATGGTCACTTGTGGTCCGCGGCCAGCCCTCGGCTGCGGCCGCCGCGACTGCCAATTCTGAAGAAATAGAAGGCCGAGTCCAGCAATCTGGGGAATCTGGTCCTTCAGGCATTGATGTT
AATGATCACAGCAAGACAGAAGATTTGGTGCAAGTTATGGGAGGAGAAGATTGTTGGCCTGCACTTCAGGATGCCCGGAATTCTCCCAAGACGTCATTGCCACAGGGATCGTCCACACAGGTTTTGCCGCCTGCAGTACCTTTTAAAAAAGCAGCGGACAATACTAGTCCTAGACTCTCAGAGGACCCTGTTTTCAATAA
TCACCAGAAATTCGCTGGCAAGCGTGGGAGTCCTAATGGAATTGTGCCACCATTTTCTTCCACTGGTGTTTCACCATCTTCACAGACTCCTAATAGGCTCTTGCCAGTTTCTGATGTTTGTTCAGAAACTGGTTTCAAAGGGAATATGCAAACTGGAGTGAAGGGATTTATGCCTAGGCCTGGTGGTAATGAGTATACAC
AGCCTTCTTTCTAGAGAGGGGATAGATAATTTCACCCACAAGGAGAATCCATTCCATTTTTTAGCAGCTATGGACATAGATCACCCAACAACATACATGAACAGAGAAGACTTAACTATGATTGGAATTCTCAGCAAACCCTTTATGGTACAAATAATACTGTGATGTATCAAAGAGTTGGTCCAAGGAATATGGGGAGA
CCACCTCCCCCATTCGTTCCTCCAAATTATGGTTTAACAAATCATTCTGGTTTCCATGGTGATTGTACTGTTATGCTTATTCCAGTTTATTTCTTTGAAATGGTTCATAGTGTTTCATATCTTCTTCTTGTGACGATATTCATATTTGTAGCTGATGAATTTCAATTTTGCAGCTTTACCAACATACTATTTTCTGCCAA
GAACACACCTAGATAGTGTCAGGGGTGGGTCTTATTTTCCACAGGCTCCACCTTCCGGTGTGTTCATTTCTGCAACTGATCCTCATTTGCGTGCTAAAGTAGTTAAACAGATTGAGTACTACTTCAGCGTCGAAAATTTATGTAAAGATCTTTTTTTGCGTCAGCATATGGATGGGCAGGGGTGGGTGCCCATTTCATTG
GTTGCAACTTTTAGACTGGTTCGCGTATTAACATCTGACGTGAACTTTATACTTAGTGCATTGCGAAATTCAAGTGTAGTTGAAGTGAAGCCTGACAAGATCAGGAGGCGTGGTGACTGGTCAAAATGGCTGTTACCTGATGGGGTTAACAATTCTACGATAGGAACTCAGCAACAAGGCACCAGTGTTAAGACAGGCAA
TGTTGAAAAGGATGCTACATTGCATGGGCAAATAACAATTGTTTCATCAGGGCATCTTATTGAATCTCCCTTAGCAGCAAATGGAGTTCAAAGTGAAGTTTCATCTAAATTGGAGACAGCTTCAGGTCATGG

Intron 2 GTTCACATAT ... TTATACTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	41.13	161	108	117
A2	37.82	111	58	77
A3	35.74	107	50	69
A4	35.63	112	47	77
A5	33.03	74	48	25
A6	40.42	297	183	220
A7	42.26	360	242	285
A8	47.03	339	263	339
A9	35.8	356	191	206
A10	41.84	326	213	256

>TRINITY_DN48610_c4_g1_i7 from sample A7 / Example spliced isoform

GAGGACGATAATTTGGTTGTAGTGGAGAACTCTTGTTTTTGCTATTATTGCCGAGATGGGTAACAAAGCACATGTTATGACAGCGGATAGCAGATGGCTTGGAATTGAGCGTTCGACCAAGTCCAGCAATCTGGGGAATCTGGTCCTTCAGGCATTGATGTTAAAGATCACAGCAAGACATAAGATTTGGTGCAAGTTAT
GTAAGGAGAAGATTGTTGGCCTGCACTTCAGGATGCCCGGAATTCTCCCAAGACGTCATTGCCACAGGGATCGTCCACACAGTGCATTGCGAAATTCAAGTGTAGTTGAAGTGAAGGTGAGCCTGACAAGATCAAGAGGCATGGTGACTGGTCAAAGTGGCTGTTACCTGATGGGGTTAACAATTCTACGATAGGAACTC
AGCAACAAGGCACCAGTGTTAAGACAGGCAATGTTGAAAAGGATGCTACATTGCATGGGCAAATAACAATTGTTTCATCAGGGCATCTTATTGAATCTCCCTTAGCAGCAAATGGAGTTCAAAGTGAAGTTTCATCTAAATTGGAGACAGCTTCAGGTCATGG

>TRINITY_DN48610_c4_g1_i5 from sample A7 / Example unspliced isoform:

GCAAAGGCTTCCCAAGTCCCGTTTCGTCTTCGGCCCCTACTCGATCGGGGGCGGCTAACCAATTGCAATAAATCTTGGACCAAATATTAGGTCTACGCTGTGGTGAGGATTGCGGAAAATTAGCTGATGGACGGAAGGCCATGAGACTCAAAAATTTCCCCTCATGCGGCGCACCACGCCATCAACAGGACAGGAGAGCA
GAACGTAAACATTATTTGCTCTTCTTCGCTGATTGCGATCGAAAGAGAAGGAGCCATGGATTGAATGAATGAGAGGGGAACGAACTGAGGTGGGAGCCAATGGAGTGTGCATCGTTGAGTAGGGCCGGCATGGACGGAGGAAGCCCAAGCCCAATCTCAATCCCATCTGCGAATGGTGGGAAGGTAAGGCCCTCCTCATG
GTCACTTGTGGTCCGCGGCCAGCCCTCGGCTGCGGCCGCCGCGACTGCCAATTCTGAAGAAATAGAAGGCCGAGTCCAGCAATCTGGGGAATCTGGTCCTTCAGGCATTGATGTTAATGATCACAGCAAGACAGAAGATTTGGTGCAAGTTATGGGAGGAGAAGATTGTTGGCCTGCACTTCAGGATGCCCGGAATTCTC
CCAAGACGTCATTGCCACAGGGATCGTCCACACAGgttcacatattaacatctaacgtgaactttatacttagTGCATTGCGAAATTCAAGTGTAGTTGAAGTGAAGGTGAGCCTGACAAGATCAAGAGGCATGGTGACTGGTCAAAGTGGCTGTTACCTGATGGGGTTAACAATTCTACGATAGGAACTCAGCAACAAG
GCACCAGTGTTAAGACAGGCAATGTTGAAAAGGATGCTACATTGCATGGGCAAATAACAATTGTTTCATCAGGGCATCTTATTGAATCTCCCTTAGCAGCAAATGGAGTTCAAAGTGAAGTTTCATCTAAATTGGAGACAGCTTCAGGTCATGG