sp|Q5JNB5|DJC15_ORYSJ ----> DnaJ protein P58IPK homolog B

Intron 1 GTATGATTGA ... AACTAAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	15.53	522	2	96
A2	15.57	499	4	92
A3	17.1	548	0	113
A4	17.04	375	1	77
A5	13.1	252	4	38
A6	17.37	623	1	131
A7	15.47	1082	3	198
A8	20.05	594	4	149
A9	19.2	745	0	177
A10	17.4	769	0	162

>TRINITY_DN48988_c0_g1_i3 from sample A7 / Example spliced isoform

AAAATGGAAAAGGTAAGAATTGATGACGGTGGTGCAAAAGTGGAAGATGAAGAAAGCAGCCAAAGTAAGCAGTTCACGTTTGCATTTTCCTCTGTTGGTTCAAAAGCTGAAGAAAGAAGTCAAAGTAAGCAGTTTACCTTTTCGTATTCCTCTGTTGGTTCAAAAGCTGAAGAAAGCAGTCAAAGTAAGCAGTTTACCTT
TGCATCTCCCTCTCCAAATTCTACCCCATTAGGATCCAGACGACATGCCAGAAGAAGCCATCGGCCAAAAATTGGAGAAAATATAAATGCATCAAGCTATGAGATTAAGATTGACTCATCTCCTTTCAGTACACAGCCTTTTGTTTTTCAAAGGGATGGAATGCAACGAGACATCTTAAGTTCTAATGGAAATATGTTTC
AAGGTACAAAACAGAAAGATGAGGAAGAACATAAAGGAAATGATATTCCAGAGCTGTTTTCATCTATGCCCAGGCACAAAGAAGAAAGGGGAGCAACGGTCATCTCAAATGTTGTAAAAAGTGCAGCAGCAGAGCAGGCTTGTGAAAAATGGCGGCTCAGGGGAAATCAAGCTTATGCAAGTGGAGACTTTCCTAAAGCA
GAGGATTGTTATTCACGAGGGGCAAGTATTGTATCTCCTAATGAAACATCAGAGAGTTGTATCCGGGCATCAATGCTGTGCTATAGCAATCGTGCGGCCACTCGCATGGCTGTTGGCAGAATGAGAGAAGCACTTGCAGATTGTAAGCGGGCAATGGCCATTGATCCAAACTTTCTAAGAGTTCAAATTAGAGCTGCCAG
TTGTCATCTTTCCCTTGGAGAGAGTGAGGCAGCAGTTACACTGTTCAAAGGGTGCTTACGTTCAGTGAAAGATGTCATAGACCTGAAAATAGCTGCAGAAGCTTCTGAGGGTGTGAGAAAAGCACAGCAAGGGTTGGAATATAGAGATCGTGCAGCAGAGTTTCTAGATACAAGAAATCCTGGAGATGCAACAAATGCAT
TGCGTATACTGAATGAAGCTTTGTCAATCAGCCCACATTCTGAGCGGTTACTTGAATTGAAAGCTTTAGCGTTTTTGATATTGCGAAAATATGAGGAGATCATACAGGTATGCGAGCAAAGCTTGGATTCTGCAGAAAGCAACTATTGCTTTCCAAACAATGACAATCAAATATGCAATGACGATTCATTGGAAAGTCTG
GGGCAGTTTCCTGTCAAATTATGGCGGTGGCGGATGTGTGCCAAGGCCCATTTCTACATGGGCAGATTGGAGGAGGCTCTTGATTTACTGTTGAAATATGAGGAAGTAAATTCTGCACTTGAAAAGTATGGCATAGAGAGTATGGAATCTTTGACATCTTTTATGGCCACGATCCGTGAACTACTCCGCCATAAGGCTGC
AGGAAATAAAGCTTTTCAAGAGGGTAGGCATGCTGAAGCAGTGGAACACTATACAGCTGCTTTGGCATGCAATGGAGAATCACGGCCTTTCACTGCTGTTTGCTTTTGCAATCGAGCGGCTGCTTCCCAAGCTCTGGGCAATATTGCTGATGCTATTGCAGATTGTAGCCGAGCCATTGCTCTGGACCCAAACTATCCCA
AGGCTATTTCTCGGAGAGCCACATTACATGAGATTGTACGTGATTATGGACAGGCAACCGTTGATCTGCAGAAGCTTACAACTCTCTTAGAGAGCCAGCAACGGAGCAAAGCAAGCCAACCAGGTAGATTGGGAAGCTCAAGCACTAGTACACAAGATCTTAGACAAGCTCGTGAACGACTTGCCAAAACAGAAGAAGAA
ATGAAAAGAGAAAATCCTTTGGATCATTATTTGATCTTGGGTGTTGAGGCTTCCAGTACTGCTGCCGAGATCAAGAAGGCTTATCGAAAAGCTGCCCTCAGACACCATCCAGATAAGGCTGGGCAGTTTTCAGTACGGATTGACAATGGAGATGATGGCTATTGGAATGAAGTTGGGGAGGAGGTCCGGAGAGATGCAGA
GAGGCTTTTCAAAATGATTGGAGAAGCATATGCAATTCTTTCAGACCCCGGAAAGCGGTTGCGCTATGATGCTGAAGAAGAAGTGAGGAAACTTCGGACAAGAGGAAGCAGCAGTGGATCTGACACTCCATCAGAGGCAAACAATTACCAATATGAGAAAGGCACTAGGCGACAGCGAGATCGATGGGAACCATGGAATG
GATATGCCCAATATCAGCGATGGCAGAATGGTCCAGATGCTGCTCAACCGGACACATATGCTCGCCGAGGTTCAAACAACTCAAGA

>TRINITY_DN48988_c0_g1_i2 from sample A7 / Example unspliced isoform:

CAATTCTTTCAGACCCCGGAAAGgtatgattgataaatttctgtagttctgcagtgggctgtgcacccttgctttacagtgtggttcaataattgtaatcacatgcattctggttgttatcaatttggtgttctgcttgagacaatactatccaccctttgtatgacttcccattatattcctttcatgtttgaaaagca
catcatattatttcactggtgcctgttcgttcttcacaatttgttggtgcaaataaccataaaaacctcatttgtttaactaaacagCGGTTGCGCTATGATGCTGAAGAAGAAGTGAGGAAACTTCGGACAAGAGGAAGCAGCAGTGGATCTGACACTCCATCAGAGGCAAACAATTACCAATATGAGAAAGGCACTAG
GCGACAGCGAGATCGATGGGAACCATGGAATGGATATGCCCAATATCAGCGATGGCAGAATGGTCCAGATGCTGCTCAACCGGACACATATGCTCGCCGAGGTTCAAACAACTCAAGA

Intron 2 GTGAGGATTA ... TATTCCACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	22.95	324	97	96
A2	19.14	245	43	73
A3	18.71	302	55	84
A4	20.35	180	46	46
A5	22.83	98	30	28
A6	17.86	69	18	12
A7	18.46	159	27	45
A8	20.78	61	15	17
A9	19.7	108	22	31
A10	21.2	171	24	68

>TRINITY_DN111049_c0_g1_i2 from sample A4 / Example spliced isoform

GTCAAAGTAAGCAGTTTACCTTTTCGTATTCCTCTGTTGGTTCAAAAGCTGAAGAAAGAAGTCAAAGTAAGCAGTTTACCTTTTCGTATTCCTCTGTTGGTTCAAAAGCTGAAGAAAGCAGTCAAAGTAAGCAGTTTACCTTTGCATCTCCCTCTCCAAATTCTACCCCATTAGGATCCAGACGACATGCCAGAAGAAGC
CATCGGCCAAAAATTGGAGAAAATATAAATGCATCAAGCTATGAGATTAAGATTGACTCATCTCCTTTCAGTACACAGCCTTTTGTTTTTCAAAGGGATGGAATGCAACGAGACATCTTAAGTTCTAATGGAAATATGTTTCAAGGTACAAAACAGAAAGATGAGGAAGAACACAAAGGAAATGATATTCCAGAGCTGTT
TTCATCTATGCCCAAGCACAAAGAAGAAAGGGGAGCAACGGTCATCTCAAATGTTGTAAAAAGTGCAGCAGCAGAGCAGGCTTGTGAAAAATGGCGGCTCAGGGGAAATCAAGCTTATGCAAGTGGAGACTTTCCTAAAGCAGAGGATTGTTATTCACGAGGGGCAAGTATTGTATCTCCTAATGAAACATCAGAGAGTT
GTATCCGGGCATCAATGCTGTGCTATAGCAATCGTGCGGCCACTCGCATGGCTGTTGGCAGAATGAGAGAAGCACTTGCAGATTGTAAGCGGGCAATGGCCATTGATCCAAACTTTCTAAGAGTTCAAATTAGAGCTGCCAGTTGTCATCTTTCCCTTGGAGAGAGTGAGGCAGCAGTTACACTGTTCAAAGGGTGCTTA
CGTTCAGTGAAAGATGTCATAGACCTGAAAATAGCTGCAGAAGCTTCTGAGGGTGTGAGAAAAGCACAGCAAGGGTTGGAATATAGAGATCGTGCAGCAGAGTTTCTAGATACAAGAAATCCTGGAGATGCAACAAATGCATTGCGTATACTGAATGAAGCTTTGTCAATCAGCCCACATTCTGAGCGGTTACTTGAATT
GAAAGCTTTAGCGTTTTTGAGATTGCGAAAATATGAGGAGATCATACAGGTATGCGAGCAAAGCCTGGATTCTGCAGAAAGCAACTATTGCTTTCCAAACAATGACAATCAAATATGCAATGACGATTCATTGGAAAGTCTGGGGCAGTTTCCTGTCAAATTATGGCGGTGGCGGATGTGTGCCAAGGCCCATTTCTACA
TGGGCAGATTGGAGGAGGCTCTTGACTTACTGTTGAAATATGAGGAAGTAAATTCTGCACTTGAAAAGTATGGCAT

>TRINITY_DN111049_c0_g1_i6 from sample A4 / Example unspliced isoform:

GTCAAAGTAAGCAGTTTACCTTTTCGTATTCCTCTGTTGGTTCAAAAGCTGAAGAAAACGAAGTCAAAGTAAGCAGTTTACCTTTTCGTATTCCTCTGTTGGTTCAAAAGCTGAAGAAAGCAGTCAAAGTAAGCAGTTTACCTTTGCATCTCCCTCTCCAAATTCTACCCCATTAGGATCCAGACGACATGCCAGAAGAA
GCCATCGGCCAAAAATTGGAGAAAATATAAATGCATCAAGCAATGAGATTAAGATTGGCTCATCTCCTTTCAGCACACAGCCTTTTGTTTTTCAAAGGGATGGAATGCAACGAGACATCTTAAGTTCTAATGGAAATATGTTTCAAGGTACAAAACAGAAAGATGAGGAAGAACACAAAGGAAATGATATTCCAGAGCTG
TTTTCATCTATGCCCAAGCACAAAGAAGAAAGGGGAGCAACGGTCATCTCAAATGTTGTAAAAAGTGCAGCAGCAGAGCAGGCTTGTGAAAAATGGCGGCTCAGgtgaggattaatgtaccgttatttacttaaaggataatgctactaggtttcttgtccattgtttctaatcagtctgtccactcttatttgacttgt
actattctgccttgtgagatttctacgggacgctttgtgaatttgatcaagctctacacttttattatttacattttccatgatttcacatactacctgcctattccacagGGGAAATCAAGCTTATGCAAGTGGAGACTTTCCTAAAGCAGAGGATTGTTATTCACGAGGGGCAAGTATTGTATCTCCTAATGAAACAT
CAGAGAGTTGTATCCGGGCATCAATGCTGTGCTATAGCAATCGTGCGGCCACTCGCATGGCTGTTGGCAGAATGAGAGAAGCACTTGCAGATTGTAAGCGGGCAATGGCCATTGATCCAAACTTTCTAAGAGTTCAAATTAGAGCTGCCAGTTGTCATCTTTCCCTTGGAGAGAGTGAGGCAGCAGTTGCACTATTCAAA
GGGTGCTTACGTTCAGTGAAAGATGTCATAGACCTGAAAATAGCTGCAGAAGCTTCTGAGGGTGTGAGAAAAGCACAGCAAGGGTTGGAATATAGAGATCGTGCAGCAGAGTTTCTAGATACAAGAAATCCTGGAGATGCAACAAATGCATTGCGTATACTGAATGAAGCTTTGTCAATCAGCCCACATTCTGAGCGGTT
ACTTGAATTGAAAGCTTTAGCGTTTTTGAGATTGCGAAAATATGAGGAGATCATACAGGTATGCGAGCAAAGCCTGGATTCTGCAGAAAGCAACTATTGCTTTCCAAACAATGACAATCAAATATGCAATGACGATTCATTGGAAAGTCTGGGGCAGTTTCCTGTCAAATTATGGCGGTGGCGGATGTGTGCCAAGGCCC
ATTTCTACATGGGCAGATTGGAGGAGGCTCTTGACTTACTGTTGAAATATGAGGAAGTAAATTCTGCACTTGAAAAGTATGGCAT