sp|Q27IK6|KN12D_ARATH ----> Kinesin-like protein KIN-12D
Intron 1 GTTAGTCCTG ... TGTTAAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.1 | 57.2 | 13.8 | 19 |
| A2 | 7.95 | 34.9 | 6.5 | 3 |
| A3 | 12.97 | 40.5 | 4.5 | 6 |
| A4 | 32.69 | 33.1 | 7.8 | 16 |
| A5 | 9.81 | 9.4 | 1.9 | 1 |
| A6 | 39.73 | 9.5 | 0 | 6 |
| A7 | 23.56 | 58.8 | 2.5 | 18 |
| A8 | 15.22 | 44.8 | 5.7 | 8 |
| A9 | 17.55 | 47.6 | 12.1 | 10 |
| A10 | 25.47 | 29.6 | 0.6 | 10 |
>TRINITY_DN129603_c4_g2_i11 from sample A1 / Example spliced isoformCATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCGGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCCGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCTTTCCCAG
CGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGGTTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATACGAGTGC
AGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATGTCGCATC
CGAGAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATTGAACACT
TATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGACATCTGTT
CAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAAGTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCTCTGGTGC
TGAAGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGCCCATCCA
GCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACCTTCTGAC
AGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGACCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGC
AGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCAC
AAGAGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGTACCAGGAGTTCTATGAGTGGGGTGAACGAGATTTTATGTTAGAGGAGATATCAAATCTGCGAGACAAGTTATCTGAACTCCTT
GATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAAT
>TRINITY_DN129603_c4_g2_i9 from sample A1 / Example unspliced isoform:ATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTgttagtcctgttttatttttcttaggttttgattaacttttttcttgatttgtcttgtattatcatggtaattctgcttctttacaatgtgagtaatttctctgcagaccaacagtaaatatttatt
gatttatgattctctactgttaaaaagGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACCTTCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTAT
TGACCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAA
AACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAGAGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGA
GGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGTACCAGGAGTTCTATGAGTGGGGTGAACGAGATTTTATGTTAGAGGAGATATCAAATCTGCGAGACAAGTGAAACAGTTATCTGAACTCC
Intron 2 GTCATCCTTG ... TTGTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.53 | 47.4 | 15 | 9 |
| A2 | 30.4 | 22.1 | 10 | 8 |
| A3 | 37.97 | 23.1 | 21 | 6 |
| A4 | 32.19 | 31 | 15 | 13 |
| A5 | 32.12 | 8.1 | 2 | 5 |
| A6 | 18.65 | 13 | 1 | 3 |
| A7 | 22.69 | 57.6 | 14 | 16 |
| A8 | 29.08 | 35.8 | 13 | 14 |
| A9 | 23.18 | 26.3 | 7 | 8 |
| A10 | 19.11 | 29.5 | 7 | 5 |
>TRINITY_DN109435_c0_g1_i12 from sample A4 / Example spliced isoformGTCCAAACATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCAGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCTGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCT
TTCCCAGCGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGATTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATA
CGAGTGCAGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATG
TCGCATCCGAGAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATT
GAACACTTATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGAC
ATCTGTTCAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAACTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCT
CTGGTGCTGAAGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGC
CCATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACC
ATCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGACCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTA
TTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTA
CTTTCACAAGAGAATAAGGCATTAAGGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGTACCAGGAGTTCTATGAGTGGGGTGAACGAGATTTTATGTTAGAGGAGATATCAAATCTGCGAGACAAGTTATCTGA
ACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGGCATATGAATGAAATACAAGGACAACTTGATGATCTCAAAATTTTATGCTCTGATCATCAGG
AAACGATAGAAAATTTGAAGAATAGGCAAGAGGACATTTCTGAAGAACAGTATATTAATATTGGTGCAGAGGTCAAAGCTTTTCCAATGCCTTGTAATTTTGAAGCTTCTGAGGTGATGTAAAATTCAGGACAACTGAACTCTTCATTAATGAAGTTGAACAAAAGATTGTAATCTTGTTTATTAATTTTGAGGGTTGTT
TTGTTTCCATCAATGTAAGTGGAGAGCAAAAGTGTAATACAGCTTAGAAGTAGTATTTTTTATAATGTTATTGTAAGGCATTCTTAAAGAACTATGAACTAATGTGTTGTGATGAACAGTCCCTGTTCATTTATTAAATATTCAGAATAGATGGGATAGATAACAGAAATCCATATAGAATAAAATATAATTGAAAATGA
ATAATAAGATGTTGACAATACAATGAGAG
>TRINITY_DN109435_c0_g1_i6 from sample A4 / Example unspliced isoform:ATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGCCCATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGgtcatccttgtt
cggcaataaagtcgataaaacacttttaaacacattgctgctaatacactgtgtatgagtgagctgattatttgtttttgttgttggcagAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACCATCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGA
CCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCA
Intron 3 GTACCAGGAG ... AGTGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.13 | 42 | 72 | 27.5 |
| A2 | 69.58 | 28 | 64.5 | 32.5 |
| A3 | 73.76 | 24 | 68 | 28 |
| A4 | 69.7 | 12 | 28 | 17 |
| A5 | 54.55 | 9 | 11 | 5.5 |
| A6 | 57.74 | 25 | 34.5 | 24 |
| A7 | 60.34 | 111.5 | 170.5 | 118.5 |
| A8 | 60.67 | 124 | 192.5 | 111 |
| A9 | 55.9 | 94 | 120 | 89 |
| A10 | 64.82 | 63 | 116.5 | 70.5 |
>TRINITY_DN129603_c4_g2_i2 from sample A1 / Example spliced isoformGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACCTTCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGACCCTATCGGTAACTTGGAGCCTCCTT
ATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTG
AAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAGAGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAAC
TCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGGCATATGAA
TGAAATACAAGGACAACTTGATGATCTCAAAATTTTATGCTCTGATCATCAGGAAACGATAGAAAATTTGAAGAATAGGCAAGAGGACATTTCTGAAGAACAGTATATTAATATTGGTGCAGAGGTCAAAGCTTTTCCAATGCCTTGCAATTTTGAAGCTTCTGAGGTGATGTAAAATTCAGGACAACTGAACTCTTCAT
TAATGAAGTTGAACAAAAGATTGTAATCTTGTTTATTAATTTTGAGGGTTGTTTTGTTTCCATCAATGTAAGTGGAGAGCAAAAGAGTAATACAGCTTAGAAGTAGTATTTTTTATAATGTTATTGTAAGGCATTCTTAAAGAACTATGAACTAATGTGTTGTGATGAACAGTCCCTGTTCATTTATTAAATATTCAGAA
TAGATGGGATAGATAACAGAAATCCATA
>TRINITY_DN129603_c4_g2_i9 from sample A1 / Example unspliced isoform:ATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTTAGTCCTGTTTTATTTTTCTTAGGTTTTGATTAACTTTTTTCTTGATTTGTCTTGTATTATCATGGTAATTCTGCTTCTTTACAATGTGAGTAATTTCTCTGCAGACCAACAGTAAATATTTATT
GATTTATGATTCTCTACTGTTAAAAAGGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACCTTCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTAT
TGACCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAA
AACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAGAGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGA
GGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGgtaccaggagttctatgagtggggtgaacgagattttatgttagaggagatatcaaatctgcgagacaagtgaaacagTTATCTGAACTCC
Intron 4 GTACCAGGAG ... GCGAGACAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.62 | 42 | 75 | 49.4 |
| A2 | 68.68 | 28 | 72.1 | 51.1 |
| A3 | 71.46 | 24 | 75 | 45.4 |
| A4 | 71.93 | 12 | 32 | 29.9 |
| A5 | 56.12 | 9 | 13 | 10.1 |
| A6 | 61.7 | 25 | 39.6 | 41.9 |
| A7 | 63.36 | 111.4 | 188.3 | 200.7 |
| A8 | 61.94 | 123.9 | 213 | 193.1 |
| A9 | 60.38 | 93.9 | 134.6 | 155.1 |
| A10 | 65.41 | 63 | 126.1 | 113.7 |
>TRINITY_DN129603_c4_g2_i2 from sample A1 / Example spliced isoformGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACCTTCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGACCCTATCGGTAACTTGGAGCCTCCTT
ATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTG
AAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAGAGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAAC
TCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGGCATATGAA
TGAAATACAAGGACAACTTGATGATCTCAAAATTTTATGCTCTGATCATCAGGAAACGATAGAAAATTTGAAGAATAGGCAAGAGGACATTTCTGAAGAACAGTATATTAATATTGGTGCAGAGGTCAAAGCTTTTCCAATGCCTTGCAATTTTGAAGCTTCTGAGGTGATGTAAAATTCAGGACAACTGAACTCTTCAT
TAATGAAGTTGAACAAAAGATTGTAATCTTGTTTATTAATTTTGAGGGTTGTTTTGTTTCCATCAATGTAAGTGGAGAGCAAAAGAGTAATACAGCTTAGAAGTAGTATTTTTTATAATGTTATTGTAAGGCATTCTTAAAGAACTATGAACTAATGTGTTGTGATGAACAGTCCCTGTTCATTTATTAAATATTCAGAA
TAGATGGGATAGATAACAGAAATCCATA
>TRINITY_DN129603_c4_g2_i7 from sample A1 / Example unspliced isoform:CATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCGGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCCGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCTTTCCCAG
CGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGGTTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATACGAGTGC
AGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATGTCGCATC
CGAGAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATTGAACACT
TATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGACATCTGTT
CAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAAGTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCTCTGGTGC
TGAAGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGCCCGTCCA
GCTGGTAGTGTTGATATACTTATCTTGCTATTTCAGTTGTGTATTTTCTGTACTATACTCCATTTAAATATCTTCGTACTGCTGCTTTGGTGTTTTATGACTGTCCTGCTGAGGCTGTGACTACATATGTTAAATATTTTGTCCATGCAGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGT
TCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACCTTCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGACCCTATCGGT
AACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCAC
TGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAGAGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATC
GTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGgtaccaggagttctatgagtggggtgaacgagattttatgttagaggagatatcaaatctgcgagacaagTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCT
CGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGGCATATGAATGAAATACAAGGACAACTTGATGATCTCAAAATTTTATGCTCTGATCATCAGGAAACGATAGAAAATTTGAAGAATAGGCAAGAGGACATTTCTGAAGAACAGTATATTAATAT
TGGTGCAGAGGTCAAAGCTTTTCCAATGCCTTGCAATTTTGAAGCTTCTGAGGTGATGTAAAATTCAGGACAACTGAACTCTTCATTAATGAAGTTGAACAAAAGATTGTAATCTTGTTTATTAATTTTGAGGGTTGTTTTGTTTCCATCAATGTAAGTGGAGAGCAAAAGAGTAATACAGCTTAGAAGTAGTATTTTTT
ATAATGTTATTGTAAGGCATTCTTAAAGAACTATGAACTAATGTGTTGTGATGAACAGTCCCTGTTCATTTATTAAATATTCAGAATAGATGGGATAGATAACAGAAATCCATA
Intron 5 GTTGGTGTGC ... CTCTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.22 | 45.9 | 3.1 | 7.1 |
| A2 | 12.92 | 27.4 | 0.9 | 4.3 |
| A3 | 8.99 | 29.4 | 4.1 | 2.9 |
| A4 | 0 | 15.7 | 2.6 | 0 |
| A5 | 23.81 | 10 | 0 | 3.6 |
| A6 | 6.08 | 44.9 | 4 | 2.9 |
| A7 | 10.46 | 117.7 | 13.6 | 13.4 |
| A8 | 11.53 | 199 | 14.6 | 26.4 |
| A9 | 11.19 | 123.4 | 9.7 | 15.7 |
| A10 | 5.99 | 83.6 | 9.4 | 5 |
>TRINITY_DN46015_c0_g1_i3 from sample A7 / Example spliced isoformCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCGGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCCGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCTTTCCCAGCGG
CTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGGTTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATACGAGTGCAGG
GATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATGTCGCATCCGA
GAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATTGAACACTTAT
TTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGACATCTGTTCAA
GATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAAGTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCTCTGGTGCTGA
AGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGCCCATCCAGCT
GTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACCATCTGACAGA
AGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGACCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGCAGG
AGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATGGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAG
AGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGTACCAGGAGTTCTATGAGTGGGGTGAACGAGATTTTATGTTAGAGGAGATATCAAATCTGCGAGACAAGAATGATACCGATAATTCT
GATCTATTTCCTCTTGCCTAGTGAAACAGTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGGCATATGAATGAAATACAAGGACAA
CTTGATGATCTCAAAATTTTATGCTCTGATCATCAGGAAACGATAGAAAATTTGAAGAATAGGCAAGAGGACATTTCTGAAGAACAGTATATTAATATTGGTGCAGAGGTCAAAGCTTTTCCAATGCCTTGTAATTTTGAAGCTTCTGAGGTGATGTAAAATTCAGGACAACTGAACTCTTCATTAATGAAGTTGAACAA
AAGATTGTAATCTTGTTTATTAATTTTGAGGGTTGTTTTGTTTCCATCAATGTAAGTGGAGAGCAAAAGAGTAATACAGCTTAGAAGTAGTATTTTTTATAATGTTATTGTAAGGCATTCTTAAAGAACTATGAACTAATGTGTTGTGATGAACAGTCCCTGTTCATTTATTAAATATTCAGAATAGATGGGATAGATAA
CAGAAATCCATATAGAATAAAATATAATTGAAAATGAATAATAAGATGTTGACAATACAATGAGAGTGCCATATATATATATATATAGGCACCTTTGGTGACTGTTCACGAGAGTTGCGTTCC
>TRINITY_DN46015_c0_g1_i4 from sample A7 / Example unspliced isoform:AATGATACCGATAATTCTGATCTATTTCCTCTTGCCTAGTGAAACAGTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGGCATATG
AATGAAATACAAGGACAACTTGATGATCTCAAAATTTTATGCTCTGATCATCAGGAAACGATAGAAAATTTGAAGgttggtgtgctattttattttagacacttggtatcttaatttagttttcacatttgcttggttgccatgtcgaaatgactgaaaagttatttctagatagaagcttaatgagactaagtttccac
tctgaacagAATAGGCAAGAGGACATTTCT
Intron 6 GTAAAACCAA ... GTTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.29 | 78 | 5.5 | 13 |
| A2 | 31.25 | 33 | 5.5 | 15 |
| A3 | 18.87 | 43 | 3 | 10 |
| A4 | 20.51 | 31 | 7 | 8 |
| A5 | 16.67 | 15 | 1 | 3 |
| A6 | 0 | 18 | 1 | 0 |
| A7 | 14.29 | 54 | 0.5 | 9 |
| A8 | 28.26 | 33 | 2 | 13 |
| A9 | 17.57 | 61 | 4 | 13 |
| A10 | 9.68 | 56 | 3 | 6 |
>TRINITY_DN109435_c0_g1_i12 from sample A4 / Example spliced isoformGTCCAAACATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCAGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCTGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCT
TTCCCAGCGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGATTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATA
CGAGTGCAGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATG
TCGCATCCGAGAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATT
GAACACTTATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGAC
ATCTGTTCAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAACTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCT
CTGGTGCTGAAGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGC
CCATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACC
ATCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGACCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTA
TTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTA
CTTTCACAAGAGAATAAGGCATTAAGGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGTACCAGGAGTTCTATGAGTGGGGTGAACGAGATTTTATGTTAGAGGAGATATCAAATCTGCGAGACAAGTTATCTGA
ACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGGCATATGAATGAAATACAAGGACAACTTGATGATCTCAAAATTTTATGCTCTGATCATCAGG
AAACGATAGAAAATTTGAAGAATAGGCAAGAGGACATTTCTGAAGAACAGTATATTAATATTGGTGCAGAGGTCAAAGCTTTTCCAATGCCTTGTAATTTTGAAGCTTCTGAGGTGATGTAAAATTCAGGACAACTGAACTCTTCATTAATGAAGTTGAACAAAAGATTGTAATCTTGTTTATTAATTTTGAGGGTTGTT
TTGTTTCCATCAATGTAAGTGGAGAGCAAAAGTGTAATACAGCTTAGAAGTAGTATTTTTTATAATGTTATTGTAAGGCATTCTTAAAGAACTATGAACTAATGTGTTGTGATGAACAGTCCCTGTTCATTTATTAAATATTCAGAATAGATGGGATAGATAACAGAAATCCATATAGAATAAAATATAATTGAAAATGA
ATAATAAGATGTTGACAATACAATGAGAG
>TRINITY_DN109435_c0_g1_i2 from sample A4 / Example unspliced isoform:GTCCAAACATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCAGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCTGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCT
TTCCCAGCGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGATTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATA
CGAGTGCAGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATG
TCGCATCCGAGAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATT
GAACACTTATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGAC
ATCTGTTCAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAACTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCT
CTGGTGCTGAAGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTGTATGCATTACAGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGgtaaaaccaaaaaactgtaaaatacttttatc
tctatcacagttgatatatttttttgtgttcagtgcttccttgaaatgttttagtatatccttaaatgaaaaagtgaaaaattaccaacagggccttgggtcaccggtgaggttgtcaaagagttgagccatccaccagggttccactctttctgtggtctatcccagtcgaatggcatgttaaaaagtgatgaatctga
gtacaagtcccagtaaagttggcagaatcgttaacacttatacatgacatttaatttgaaggaattaagtgttatgtggggcagctcctcgaggcatgttcctggaagcacttccaaaaacaagagagaatttaaatttaaataattgtattgtttttacagGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGC
AAATATTAGCCCATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTTAGTCGTGTTTCATTTTTCTTAGGTTTTGATTAGCTTTTTTCTTGATTTGTCTTGTATTATCATGGTAATTCTGCTTCTTTACAATGTGAGTAATTTCTCTGCAGACCAACAG
TAAATATTTATTGATTTATGATTCTCTACTGTTAAAAAGGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACCATCTGACAGAAGTAATAAACTGCAAGATTTTTCTGA
AAGTTCATGTATTGACCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCAGAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTG
AACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAGAGAATAAGGCATTAAGGGAAGAAATG
AAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGT
Intron 7 GTACCAGGAG ... AGTGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.16 | 42 | 69 | 14 |
| A2 | 67.44 | 28 | 58 | 6 |
| A3 | 71.76 | 24 | 61 | 6 |
| A4 | 66.67 | 12 | 24 | 6 |
| A5 | 50 | 9 | 9 | 6 |
| A6 | 54.55 | 25 | 30 | 12 |
| A7 | 58.27 | 111 | 155 | 46 |
| A8 | 57.73 | 123 | 168 | 59 |
| A9 | 53.27 | 93 | 106 | 40 |
| A10 | 62.5 | 63 | 105 | 20 |
>TRINITY_DN42908_c1_g1_i3 from sample A9 / Example spliced isoformGTCCAAACATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCGGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCCGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCT
TTCCCAGCGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGGTTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATA
CGAGTGCAGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATG
TCGCATCCGAGAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATT
GAACACTTATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGAC
ATCTGTTCAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAAGTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCT
CTGGTGCTGAAGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGC
CCATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACC
ATCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGACCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTA
TTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTA
CTTTCACAAGAGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTT
TCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGGCATATGAATGAAATACAAGGACAACTTGATGATCTCAAAATTTTATGCTCTGATCATCAGGAAACGATAGAAAATTTGAAGAATAGGCAAGAGGACATTTCTGAAGAACAGTATATTAATATTGGTGCAGA
GGTCAAAGCTTTTCCAATGCCTTGTAATTTTGAAGCTTCTGAGGTGATGTAAAATTCAGGACAACTGAACTCTTCATTAATGAAGTTGAACAAAAGATTGTAATCTTGTTTATTAATTTTGAGGGTTGTTTTGTTTCCATCAATGTAAGTGGAGAGCAAAAGAGTAATACAGCTTAGAAGTAGTATTTTTTATAATGTTA
TTGTAAGGCATTCTTAAAGAACTATGAACTAATGTGTTGTGATGAACAGTCCCTGTTCATTTATTAAATATTCAGAATAGATGGGATAGATAACAGAAATCCATATAGAATAAAATATAATTGAAAATGAATAATAAGATGTTGACAATACAATGAGAGTGCCATATATATATATATATAGGCACCTTTGGTGACTGTTC
ACGAGAGTTGCGTTCCTTAATTGAATATTTATTTGTTATTATTTATTGTTAAGTATTTAATGTATTA
>TRINITY_DN42908_c1_g1_i5 from sample A9 / Example unspliced isoform:GTCCAAACATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCGGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCCGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCT
TTCCCAGCGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGGTTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATA
CGAGTGCAGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATG
TCGCATCCGAGAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATT
GAACACTTATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGAC
ATCTGTTCAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAAGTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCT
CTGGTGCTGAAGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGC
CCATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACC
ATCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGACCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTA
TTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTA
CTTTCACAAGAGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGgtaccaggagttctatgagtggggtgaacgagattttatgttagaggagatatcaaatctgcgagacaagaatgatac
cgataattctgatctatttcctcttgcctagtgaaacagTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGGCATATGAATGAAAT
ACAAGGACAACTTGATGATCTCAAAATTTTATGCTCTGATCATCAGGAAACGATAGAAAATTTGAAGAATAGGCAAGAGGACATTTCTGAAGAACAGTATATTAATATTGGTGCAGAGGTCAAAGCTTTTCCAATGCCTTGTAATTTTGAAGCTTCTGAGGTGATGTAAAATTCAGGACAACTGAACTCTTCATTAATGA
AGTTGAACAAAAGATTGTAATCTTGTTTATTAATTTTGAGGGTTGTTTTGTTTCCATCAATGTAAGTGGAGAGCAAAAGAGTAATACAGCTTAGAAGTAGTATTTTTTATAATGTTATTGTAAGGCATTCTTAAAGAACTATGAACTAATGTGTTGTGATGAACAGTCCCTGTTCATTTATTAAATATTCAGAATAGATG
GGATAGATAACAGAAATCCATATAGAATAAAATATAATTGAAAATGAATAATAAGATGTTGACAATACAATGAGAGTGCCATATATATATATATATAGGCACCTTTGGTGACTGTTCACGAGAGTTGCGTTCCTTAATTGAATATTTATTTGTTATTATTTATTGTTAAGTATTTAATGTATTA
Intron 8 GTCTTCAATT ... CATTTGGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.99 | 65 | 70 | 142 |
| A2 | 64 | 27 | 33 | 63 |
| A3 | 53.37 | 38 | 20 | 67 |
| A4 | 55.9 | 43 | 30 | 79 |
| A5 | 59.18 | 10 | 11 | 18 |
| A6 | 64.84 | 16 | 24 | 35 |
| A7 | 56.52 | 100 | 78 | 182 |
| A8 | 59.89 | 72 | 60 | 155 |
| A9 | 66.67 | 44 | 37 | 139 |
| A10 | 59.25 | 54 | 39 | 118 |
>TRINITY_DN121064_c5_g1_i9 from sample A3 / Example spliced isoformGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCGGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCCGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCTTTCCCAGCGGCTAGAGGCCGGGC
AGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGGTTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATACGAGTGCAGGGATGCCCCTCATT
TCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATGTCGCATCCGAGAGTGTGACGCAG
GAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATTGAACACTTATTTGGTAGAATTCA
ACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGACATCTGTTCAAGATGTGATTTCTC
TGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAAGTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCTCTGGTGCTGAAGGTGTCCGTTTA
AAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGCCCATCCAGCTGTTGTGCAATAGA
AACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGC
AGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATGGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAGAGAATAAGGCATTAAAGGAAG
AAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGTACCAGGAGTTCTATGAGTGGGGTGAACGAGATTTTATGTTAGAGGAGATATCAAATCTGCGAGACAAGTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAA
AGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGGCATATGAATGAAATACAAGGACAACTTGATGATCTCAAAATTTTATGCTCTGATCATCAGGAAACGATAGAAAATTTGAAGAATAGGCAAGA
GGACATTTCTGAAGAACAGTATATTAATATTGGTGCAGAGGTCAAAGCTTTTCCAATGCCTTGCAATTTTGAAGCTTCTGAGGTGATGTAAAATTCAGGACAACTGAACTCTTCATTAATGAAGTTGAACAAAAGATTGTAATCTTGTTTATTAATTTTGAGGGTTGTTTTGTTTCCATCAATGTAAGTGGAGAGCAAAA
GTGTAATACAGCTTAGAAGTAGTATTTTTTATAATGTTATTGTAAGGCATTCTTAAAGAACTATGAACTAATGTGTTGTGATGAACAGTCCCTGTTCATTTATTAAATATTCAGAATAGATGGGATAGATAACAGAAATCCATATAGAATAAAATATAATTGAAAATGAATAATAAGATGTTGACAATACAATGAGAGTG
CCG
>TRINITY_DN121064_c5_g1_i1 from sample A3 / Example unspliced isoform:TTCACAAGAGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTC
TATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGCCCATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGG
GAACTGCACCACACACAGTACAATCAAAGgtcttcaatttattctttcaccacaccttctgacagaagtaataaactgcaagatttttctgaaagttcatgtattgaccctatcggtaacttggagcctccttatatctttaatggtggtcagctgagcagtttagagtctccacaggtttctagtaggaaatgcagtgg
tgaagtgggaaattgttcaatgaattgcatttggaagGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATGGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAG
AGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAGAGAATAAGGCATTAAAGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGTACCAGGAGTTCTATGAGTGG
GGTGAACGAGATTTTATGTTAGAGGAGATATCAAATCTGCGAGACAAGTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAGG
Intron 9 GTCTTCAATT ... AGCTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.8 | 42.5 | 53.7 | 38.7 |
| A2 | 63.77 | 13 | 28.3 | 20.2 |
| A3 | 56.8 | 17 | 18.3 | 29.7 |
| A4 | 46.47 | 25.7 | 23.3 | 25.7 |
| A5 | 41.64 | 13.2 | 9.3 | 10.8 |
| A6 | 58.79 | 9 | 18.3 | 9.5 |
| A7 | 48.38 | 53.8 | 59.7 | 52.5 |
| A8 | 56.52 | 35.3 | 51.7 | 46.2 |
| A9 | 42.57 | 47 | 30.3 | 47.5 |
| A10 | 45.03 | 35 | 28.7 | 35.8 |
>TRINITY_DN109435_c0_g1_i14 from sample A4 / Example spliced isoformGTCCAAACATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCAGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCTGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCT
TTCCCAGCGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGATTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATA
CGAGTGCAGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATG
TCGCATCCGAGAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATT
GAACACTTATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGAC
ATCTGTTCAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAACTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCT
CTGGTGCTGAAGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGC
CCATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGTTTAGAGTCTCCAGAGGTTTCTAGTAG
GAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGA
GGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAGAGAATAAGGCATTAAGGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGTACCAGGAG
TTCTATGAGTGGGGTGAACGAGATTTTATGTTAGAGGAGATATCAAATCTGCGAGACAAGTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGAT
GGTTAGGCATATGAATGAAATACAAGGACAACTTGATGATCTCAAAATTTTATGCTCTGATCATCAGGAAACGATAGAAAATTTGAAGAATAGGCAAGAGGACATTTCTGAAGAACAGTATATTAATATTGGTGCAGAGGTCAAAGCTTTTCCAATGCCTTGTAATTTTGAAGCTTCTGAGGTGATGTAAAATTCAGGAC
AACTGAACTCTTCATTAATGAAGTTGAACAAAAGATTGTAATCTTGTTTATTAATTTTGAGGGTTGTTTTGTTTCCATCAATGTAAGTGGAGAGCAAAAGTGTAATACAGCTTAGAAGTAGTATTTTTTATAATGTTATTGTAAGGCATTCTTAAAGAACTATGAACTAATGTGTTGTGATGAACAGTCCCTGTTCATTT
ATTAAATATTCAGAATAGATGGGATAGATAACAGAAATCCATATAGAATAAAATATAATTGAAAATGAATAATAAGATGTTGACAATACAATGAGAG
>TRINITY_DN109435_c0_g1_i2 from sample A4 / Example unspliced isoform:GTCCAAACATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCAGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCTGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCT
TTCCCAGCGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGATTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATA
CGAGTGCAGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATG
TCGCATCCGAGAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATT
GAACACTTATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGAC
ATCTGTTCAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAACTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCT
CTGGTGCTGAAGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTGTATGCATTACAGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGTAAAACCAAAAAACTGTAAAATACTTTTATC
TCTATCACAGTTGATATATTTTTTTGTGTTCAGTGCTTCCTTGAAATGTTTTAGTATATCCTTAAATGAAAAAGTGAAAAATTACCAACAGGGCCTTGGGTCACCGGTGAGGTTGTCAAAGAGTTGAGCCATCCACCAGGGTTCCACTCTTTCTGTGGTCTATCCCAGTCGAATGGCATGTTAAAAAGTGATGAATCTGA
GTACAAGTCCCAGTAAAGTTGGCAGAATCGTTAACACTTATACATGACATTTAATTTGAAGGAATTAAGTGTTATGTGGGGCAGCTCCTCGAGGCATGTTCCTGGAAGCACTTCCAAAAACAAGAGAGAATTTAAATTTAAATAATTGTATTGTTTTTACAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGC
AAATATTAGCCCATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTTAGTCGTGTTTCATTTTTCTTAGGTTTTGATTAGCTTTTTTCTTGATTTGTCTTGTATTATCATGGTAATTCTGCTTCTTTACAATGTGAGTAATTTCTCTGCAGACCAACAG
TAAATATTTATTGATTTATGATTCTCTACTGTTAAAAAGGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGgtcttcaatttattctttcaccacaccatctgacagaagtaataaactgcaagatttttctga
aagttcatgtattgaccctatcggtaacttggagcctccttatatctttaatggtggtcagctgagcagTTTAGAGTCTCCAGAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTATTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTG
AACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTACTTTCACAAGAGAATAAGGCATTAAGGGAAGAAATG
AAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGT
Intron 10 GTTCGTTTTG ... TTTTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.29 | 65 | 1.8 | 22 |
| A2 | 27.59 | 63 | 9.8 | 24 |
| A3 | 29.21 | 63 | 6 | 26 |
| A4 | 25 | 45 | 6 | 15 |
| A5 | 21.95 | 32 | 1.5 | 9 |
| A6 | 26.67 | 11 | 0.5 | 4 |
| A7 | 28.91 | 91 | 4.3 | 37 |
| A8 | 24.72 | 67 | 2.8 | 22 |
| A9 | 24.55 | 83 | 5 | 27 |
| A10 | 21.82 | 86 | 3.3 | 24 |
>TRINITY_DN120392_c0_g1_i6 from sample A2 / Example spliced isoformGTCCAAACATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCAGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCCGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCT
TTCCCAGCGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGGTTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATA
CGAGTGCAGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATG
TCGCATCCGAGAGTGTGACGCAGGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATT
GAACACTTATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGAC
ATCTGTTCAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAAGTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAGACAGAAGCTCT
CTGGTGCTGAAGGTGGCCGTTTAAAAGAAGCAGCAAATATCAACAAATCTCTCTCTGCATTGGGACTTGTGATCATGAACCTAGTTGATATTGCTAATGGAAAGCAGCGCCATGTTCCATACCGTGATTCCAAGCTCACTTTTCTATTGCAGGATTCACTTGGTGGAAACTCAAAAACTACAGTCATTGCAAATATTAGC
CCATCCAGCTGTTGTGCAATAGAAACATTAAGTACACTGAAGTTTGCGCAACGGGCAAAGTTCATACAGAATACTGTGGTTATCAATGAAGACACAACTGAAGAAGTTTCAGTTCTGCGGGCGCAGATTGAGCAGTTGAAGAGGGAACTGCACCACACACAGTACAATCAAAGGTCTTCAATTTATTCTTTCACCACACC
ATCTGACAGAAGTAATAAACTGCAAGATTTTTCTGAAAGTTCATGTATTGACCCTATCGGTAACTTGGAGCCTCCTTATATCTTTAATGGTGGTCAGCTGAGCAGTTTAGAGTCTCCACAGGTTTCTAGTAGGAAATGCAGTGGTGAAGTGGGAAATTGTTCAATGAATTGCATTTGGAAGGTTAGAACGTTGGAAGGTA
TTGTAGCAGGAGCCCTGCGGCGGGAACTGGCAGCTGAACGGTTTTCAAAACATTTGTCCACTGAAATTGAATACCTGAAGTACTTGGTTCAACAGCGTGAAGAAGAAACTCAGTGTACTCGAATGTTGCTGAGGTTCCGTGAAGAGAAAATCACAAGGATGGAATCTGCTGCAGCTGGTTCTATGTCATTAGAAACATTA
CTTTCACAAGAGAATAAGGCATTAAGGGAAGAAATGAAGCTTCTTCGAGGAAAGATTGATCGTAATCCTGAGCTAACTCGTTTTGCAATGGAAAACATCAAACTCATAGAACAGCTTCGCAGGTACCAGGAGTTCTATGAGTGGGGTGAACGAGATTTTATGTTAGAGGAGATATCAAATCTGCGAGACAAGAATGATAC
CGATAATTCTGATCTATTTCCTCTTGCCTAGTGAAACAGTTATCTGAACTCCTTGATTGGAAGCAGCAGCAAGAGCAAAGCTCTGGAAAGGACAAATTGAATCAGTCTCGAGCACTTTCAAACATAGAAGATAAATGCTGGACTACATGGAGTGCGTGTTCAAAAACAAATTCTGAGATGGTTAG
>TRINITY_DN120392_c0_g1_i4 from sample A2 / Example unspliced isoform:GTCCAAACATCTTTCCATCATTTGGCGGGAGGAGAGGGTGGCAAAATATACGAAACCCTTAAAACCCCCGGTATGCAGTAGAGAAGTCCGCATGCATTGAAGATTCAGTCCGAGAGTTTCAATTTGCGATGGAGTTAATCCACCTATGAGCTGCAATGTCGAATCTTCCGAGGAATCCTTTGCATTTGTCCTCGGCCTCT
TTCCCAGCGGCTAGAGGCCGGGCAGGTCTTCGCAGGGCCGAGAGCGATGGCGATTCAATCAGCCGCACAGGTTCTTCCAGCACCGGAAGCTTCGATAATCCTACCGAGAACATCTCTAACGTTAACGGCAAATCCACTCCTACGTCTCTGTCCCGATCGCAGAGCTCCAAAAGGCTTAACAGTCCCCAGTTACTAAAATA
CGAGTGCAGGGATGCCCCTCATTTCGAACTTCAAGATCTTCATCGTGTCACCGATGCCAACGTGCAGGTTATGATTCGCATCCGGCCGCTTAGCATCCCGGAGATTGCCTCCCACGGCTTCGGAAGATGCATCAGACAGGAAAGCGCATGCGCGTTAACGTGGCTCGGGCAGCCGGAGAGCCGATTTTCGTTCGACTATG
TCGCATCCGAGAGTGTGACGCAGgttcgttttgttttcatttggtagcggtttgctaaaaaatacaattagtcgaggcagattgcaacttctgaaattgatggaatgatcagaagaatcagaatgcattctgtcagctgataaacgatgccgtttctagcaaggggtacccattcttaaaattccagtagcttattcgat
ttcgtgtgttttctccagGAAGAAGTGTTTAATGTTATAGGTGCCCCGATGGTTGAGAATTGTCTAGCAGGCTATAATAGCTGCATGTTCGCGTATGGACAGACAGGAAGTGGGAAGACCCATACTATTCTTGGAGACCTTGAGGGATTGGATGCCAATCCTAGTGTGGATCGGGGATTGACACCTCGCATCATTGAACA
CTTATTTGGTAGAATTCAACAAGATGAATCTTCTCTCGAACTTGAGAATGTAAAGTATTCTTGCAAATGTTCCTTCTTGGAGATATACAATGAACAAATAACAGACCTATTGGAACCCATGTTAATGAATTTACCTGTAAGAGAATACCACAAGAAAGGTGTGTATGTGGAGAATCTTACTGAAGTAGAGGTGACATCTG
TTCAAGATGTGATTTCTCTGCTTCTTCAGGGCAATGCAAACAGAAAAGTTGCAGTCACGAACATGAACAAAGAAAGCAGCCGTTCACATAGTATATTCACCTGTTCCATACAAAGAAAAAGTGGTTGTACAAATAAAACATTGCATGGGCTTCTCCATTTGGTGGATTTGGCAGGCTCAGAAAG