sp|Q9M350|GACP4_ARATH ----> Gamma-tubulin complex component 4
Intron 1 GTGAAATAAA ... CTTATGCTAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.67 | 5 | 0 | 2 |
| A2 | 29.41 | 6 | 4 | 1 |
| A3 | 57.14 | 3 | 4 | 4 |
| A4 | 16.67 | 5 | 0 | 2 |
| A5 | 0 | 3 | 0 | 0 |
| A6 | 5.88 | 8 | 0 | 1 |
| A7 | 0 | 4 | 0 | 0 |
| A8 | 7.69 | 6 | 0 | 1 |
| A9 | 5.88 | 8 | 0 | 1 |
| A10 | 6.67 | 7 | 0 | 1 |
>TRINITY_DN107305_c0_g1_i5 from sample A2 / Example spliced isoformTGATCAGTGGCAGAATGCTGCACTTTTGTTAAATTCTGTACTGCTGGGGTTGTTGGGACGGTGAAGAGCTGATCAGTGGCAGAATGCTGCACTTTTGTTAAATTCTGTACTGCTGGGGTTGTTGGGACGGTGAAGAGCTGATCAGTGGCAGAATGCTGCACGAGTTACTACTAGCCTTGGTGGGGTGTACCGGGGATTTC
GTTATAGATGAAAGAGAAGAACAGGAAAATGCAAACGCTGATCCCGAGAGGGAGGAAGCCATGGCTGCAGAGTGCACCTTCAAGCTTGCCCCTGATCTCACCTTTCTCAAAAATTCTGAGAGGGAAATTATAGAGAGACTTCTTCGCCTTGGATTTTATTATCGCGAACTGGACCGTTTTGCTGTAAAGTCACGAAATCT
GAGCTGGATAACTTCTACATACTCTGATTTTCAAATACAAGATACAGTGGCATTGAAAGGAAGAAAAAAAACTCCGGCAAGTGTTTATCGCAGGGCACTTGCAAATGGTATCTCTGAAGTATTGTCGATCTATAGGTCTGCAGTCCTACAAGTGGAACAAAACTTGTTAGCTGATCCTGTGCCAGTGTTGGCTAGTGTAA
CACAGGGTCTGAATAAGTTTGAAGTATTGATGCCACCACTTCATGCCCTTGTCTTGGAAGTTGAACGGGAAGATGTTCGAGGGGGACGCCTTCTAAATTTACTACACAAAAAATGTCACTGTGGAGTTCCTGAGTTGCAGGCATGCATGCAGAGGCTTCTTTGGCATGGACATCAGGTTATGTATAGACAACTAGCAGCG
TGGATGGTCTATGGTATCCTTCAAGATCAATATGGGGAATTTTTCATTAGCAGACAGCATGGTGGGGATATGCCACATGGTTTACAACAGTCTGATCTTGCCATAGAGAGATCAACATGGAATGCTTCAGAAGACACAAAATTGTCTGATTGGCATACAGGATTTCATGTTTTCCTGGACATGCTACCAGATTATATTCA
AATGCGAGTTGCAGAGTCCATTCTTTTTGTAGGCAAAGCAATTAGAGTTCTGCGCAACCCTAGCCCATCTTTTCAGAGCCAGAAAGCTGGATCTCATCAACAATCAAGGACTTCAAATAGACTGCAAGGAACAACAGGAAGCTTTTCTTTCCAAAAGGAGTCATTTTTGGCAGGGAGACCTTCACATGATGCAAAGCTTC
TTCCACAATCTGAAGCTGATAAAATTGCAGCAATGCTTCAAGAGTTGAAGGACATGCCTGAATTCCACAAGAGGTCATTTGAATGTGCCGTTGATTCTATTCGCACTATTGCAGCTACACATCTTTGGCAGGTGTTTGTAGCTTGTGGTTGTACATGCAGACTTGAATGGTCATTTGAAAGCACTTAAAGATTACTTCCT
CTTGGCTAAAGGAGATTTCTTTCAGTGCTTTCTAGAGGAGAGTCGTTCTTTAATGCGTTTGCCACCACGACCATCAACTGCTGAGGCAGACCTTAAAGTTCCCTTTCAACAGGCTGCAATCAAGACTATTGGAGATGATGATAAATACTTTACCAGGGTGTCATTGAGAATGCCTTCATTAGGAAGCACATCAACATCTC
ATGGAGATATACCAAGGTCAAAAACCAGTGGGGATGGAAGTTTAGGTACCTTGTCAAATATGTATGGAAATTCATCTACAGGCCCTTCATTAGATGGTTGGGATGGTATTGCACTGGAGTATAGTGTTGATTGGCCACTACAACTGCTTTTTACTCGAGAAGTGCTTGCCAAGTATTGTAAAGTTTTCCAGTATTTGTTA
CGGCTTAAGCGTATTCAACTAGAGTTGGAAAAATCATGGGCAGAAGCAATGCAACAAGATCATGCAGATTCTGCTCGTGAACGCAAGGATCGCACAAATAGCTTGGTTTCCCAACAACGTCGACAACAACGCATGCCAATGTGGCGTGTTAGACAACACATGACTTATTTGATTACTAATTTGCAATTCTACATACAGGT
TGATGTGATTGAATCTCAATGGAATCTTTTACAAGAGCGTGTTGAAGCATCTGAGGATTTTACTGAACTTGTCAGATTTCATCAAGAATATTTATCGGCATTGATTTCTCAATCTTTTTTGGATATTGGATCTGTATCAAGAATTCTGGACAGCATCATCAAATTATGTTTACAGCTTTGTCGTATTATTGAACAATATG
AAGGCACCCCAAATACAACAGAGTTGGAGCAGATCACAGAGGAATTCAACAAGAAATCAAATTCTTTATATACAATCTTGCGGAGCAGCAAACTTGCCGGAAGCCAACGTGCACCTTTTCTGAGACAGTTCCTGCTTCGTTTAAATTACAACTCTTTCTTTGAGGCTACAGCAAGAGGTGCACTAAATGTTGTAAGAGCA
CGTCCAAGTTTGTCAGCTGCACATTAAAGTAAATGGAGAGCTTTTACCGAAGATTTTTTGTAGAAAATGCTGATCATTGCTTCTATTTGTTTCTTCTTTGGAGAGTGGTGCAGCTAACTTCACTAATTTAATATTTTATCAGTTTATCTATTTCTGTTGTTATGTAATGCTACTTCATTCCAAAGTTATTCTATTTTAAA
GATTAAATGCTATTGCATGCCATATCCAAAGGGAAAGGAGCCA
>TRINITY_DN107305_c0_g1_i2 from sample A2 / Example unspliced isoform:CATAATGCAAATTTTCAGTTAGTCAGATTTGATGCTTATCTGCATTGGGATCATTTCAAGGAGTCAGATTTAAGTTTGACATGCTTTTTATTTGTACATGTGATTTAAGATTTCATATACAACTTGTTTACTGTTGGTATGAAGGACATGCCTGAATTCCACAAGAGGTCATTTGAATGTGCCGTTGATTCTATTCGCAC
TATTGCAGCTACACATCTTTGGCAGgtgaaataaaccaactgtaaagaattatcatttggcaaatatagaaaatcagaatttgcttcaatactgattaggatgtttaatattttggtctcttatgctagGTGTTTGTAGCTTGTGGTTGTACATGCAGACTTGAATGGTCATTTGAAAGCACTTAAAGATTACTTCCTCT
TGGCTAAAGGAGATTTCTTTCAGTGCTTTCTAGAGGAGAGTCGTTCTTTAATGCGTTTGCCACCACGACCATCAACTGCTGAGGCAGACCTTAAAGTTCCCTTTCAACAGGACATGCTACCAGATTATATTCAAATGCGAGTTGCAGAGTCCATTCTTTTTGTAGGCAAAGCAATTAGAGTTCTGCGCAACCCTAGCCCA
TCTTTTCAGAGCCAGAAAGCTGGATCTCATCAACAATCAAGGACTTCAAATAGACTGCAAGGAACAACAGGAAGCTTTTCTTTCCAAAAGGAGTCATTTTTGGCAGGGAGACCTTCACATGATGCAAAGCTTCTTCCACAATCTGAAGCTGATAAAATTGCAGCAATGCTTCAAGAGTTGAAGGTACCTTTTGTCATTGA
ATGAGTTATTTGAAAAGATAAGACTTATCAAGTTTATATCAATGTTTAGCTAGTGTTTGGTTATGGTACTAATTTTGAT
Intron 2 GTAAATTTAT ... TTATTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 4 | 2.5 | 6 |
| A2 | 60 | 2 | 2 | 3 |
| A3 | 33.33 | 6 | 0 | 3 |
| A4 | 100 | 0 | 0 | 1 |
| A5 | 80 | 1 | 0.8 | 4 |
| A6 | 52.11 | 34 | 14.2 | 37 |
| A7 | 27.78 | 26 | 16.5 | 10 |
| A8 | 38.46 | 32 | 15 | 20 |
| A9 | 51.52 | 16 | 15.5 | 17 |
| A10 | 57.89 | 8 | 11 | 11 |
>TRINITY_DN107305_c0_g1_i5 from sample A2 / Example spliced isoformTGATCAGTGGCAGAATGCTGCACTTTTGTTAAATTCTGTACTGCTGGGGTTGTTGGGACGGTGAAGAGCTGATCAGTGGCAGAATGCTGCACTTTTGTTAAATTCTGTACTGCTGGGGTTGTTGGGACGGTGAAGAGCTGATCAGTGGCAGAATGCTGCACGAGTTACTACTAGCCTTGGTGGGGTGTACCGGGGATTTC
GTTATAGATGAAAGAGAAGAACAGGAAAATGCAAACGCTGATCCCGAGAGGGAGGAAGCCATGGCTGCAGAGTGCACCTTCAAGCTTGCCCCTGATCTCACCTTTCTCAAAAATTCTGAGAGGGAAATTATAGAGAGACTTCTTCGCCTTGGATTTTATTATCGCGAACTGGACCGTTTTGCTGTAAAGTCACGAAATCT
GAGCTGGATAACTTCTACATACTCTGATTTTCAAATACAAGATACAGTGGCATTGAAAGGAAGAAAAAAAACTCCGGCAAGTGTTTATCGCAGGGCACTTGCAAATGGTATCTCTGAAGTATTGTCGATCTATAGGTCTGCAGTCCTACAAGTGGAACAAAACTTGTTAGCTGATCCTGTGCCAGTGTTGGCTAGTGTAA
CACAGGGTCTGAATAAGTTTGAAGTATTGATGCCACCACTTCATGCCCTTGTCTTGGAAGTTGAACGGGAAGATGTTCGAGGGGGACGCCTTCTAAATTTACTACACAAAAAATGTCACTGTGGAGTTCCTGAGTTGCAGGCATGCATGCAGAGGCTTCTTTGGCATGGACATCAGGTTATGTATAGACAACTAGCAGCG
TGGATGGTCTATGGTATCCTTCAAGATCAATATGGGGAATTTTTCATTAGCAGACAGCATGGTGGGGATATGCCACATGGTTTACAACAGTCTGATCTTGCCATAGAGAGATCAACATGGAATGCTTCAGAAGACACAAAATTGTCTGATTGGCATACAGGATTTCATGTTTTCCTGGACATGCTACCAGATTATATTCA
AATGCGAGTTGCAGAGTCCATTCTTTTTGTAGGCAAAGCAATTAGAGTTCTGCGCAACCCTAGCCCATCTTTTCAGAGCCAGAAAGCTGGATCTCATCAACAATCAAGGACTTCAAATAGACTGCAAGGAACAACAGGAAGCTTTTCTTTCCAAAAGGAGTCATTTTTGGCAGGGAGACCTTCACATGATGCAAAGCTTC
TTCCACAATCTGAAGCTGATAAAATTGCAGCAATGCTTCAAGAGTTGAAGGACATGCCTGAATTCCACAAGAGGTCATTTGAATGTGCCGTTGATTCTATTCGCACTATTGCAGCTACACATCTTTGGCAGGTGTTTGTAGCTTGTGGTTGTACATGCAGACTTGAATGGTCATTTGAAAGCACTTAAAGATTACTTCCT
CTTGGCTAAAGGAGATTTCTTTCAGTGCTTTCTAGAGGAGAGTCGTTCTTTAATGCGTTTGCCACCACGACCATCAACTGCTGAGGCAGACCTTAAAGTTCCCTTTCAACAGGCTGCAATCAAGACTATTGGAGATGATGATAAATACTTTACCAGGGTGTCATTGAGAATGCCTTCATTAGGAAGCACATCAACATCTC
ATGGAGATATACCAAGGTCAAAAACCAGTGGGGATGGAAGTTTAGGTACCTTGTCAAATATGTATGGAAATTCATCTACAGGCCCTTCATTAGATGGTTGGGATGGTATTGCACTGGAGTATAGTGTTGATTGGCCACTACAACTGCTTTTTACTCGAGAAGTGCTTGCCAAGTATTGTAAAGTTTTCCAGTATTTGTTA
CGGCTTAAGCGTATTCAACTAGAGTTGGAAAAATCATGGGCAGAAGCAATGCAACAAGATCATGCAGATTCTGCTCGTGAACGCAAGGATCGCACAAATAGCTTGGTTTCCCAACAACGTCGACAACAACGCATGCCAATGTGGCGTGTTAGACAACACATGACTTATTTGATTACTAATTTGCAATTCTACATACAGGT
TGATGTGATTGAATCTCAATGGAATCTTTTACAAGAGCGTGTTGAAGCATCTGAGGATTTTACTGAACTTGTCAGATTTCATCAAGAATATTTATCGGCATTGATTTCTCAATCTTTTTTGGATATTGGATCTGTATCAAGAATTCTGGACAGCATCATCAAATTATGTTTACAGCTTTGTCGTATTATTGAACAATATG
AAGGCACCCCAAATACAACAGAGTTGGAGCAGATCACAGAGGAATTCAACAAGAAATCAAATTCTTTATATACAATCTTGCGGAGCAGCAAACTTGCCGGAAGCCAACGTGCACCTTTTCTGAGACAGTTCCTGCTTCGTTTAAATTACAACTCTTTCTTTGAGGCTACAGCAAGAGGTGCACTAAATGTTGTAAGAGCA
CGTCCAAGTTTGTCAGCTGCACATTAAAGTAAATGGAGAGCTTTTACCGAAGATTTTTTGTAGAAAATGCTGATCATTGCTTCTATTTGTTTCTTCTTTGGAGAGTGGTGCAGCTAACTTCACTAATTTAATATTTTATCAGTTTATCTATTTCTGTTGTTATGTAATGCTACTTCATTCCAAAGTTATTCTATTTTAAA
GATTAAATGCTATTGCATGCCATATCCAAAGGGAAAGGAGCCA
>TRINITY_DN107305_c0_g1_i1 from sample A2 / Example unspliced isoform:CAGCTGCACATTAAAGgtaaatttatagaattgtcttttaccccttgtcatggtctaagagatgcaattgtcaccattcaatactgttttcttaaacaaatttaatgatgttgcatgcacacatgaaatgggctcttattggcagTAAATGGAGAGCTTTTACCGAAGATTTTTTGTAGAAAATGCTGATCATTGCTTCT
ATTTGTTTCTTCTTTGGAGAGTGGTGCAGCTAACTTCACTAATTTAATATTTTATCAGTTTATCTATTTCTGTTGTTATGTAATGCTACTTCATTCCAAAGTTATTCTATTTTAAAGATTAAATGCTATTGCATGCCATATCCAAAGGGAAAGGAGCCA