sp|Q76CU2|PDR1_TOBAC ----> Pleiotropic drug resistance protein 1
Intron 1 GTCCGGTATG ... TTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.14 | 19 | 46 | 9 |
| A2 | 55.31 | 18.6 | 26 | 20 |
| A3 | 52.72 | 14.8 | 21 | 12 |
| A4 | 52.55 | 13 | 22 | 6.8 |
| A5 | 48.39 | 8 | 14 | 1 |
| A6 | 51.42 | 126.1 | 136.3 | 130.6 |
| A7 | 49.72 | 159.6 | 152 | 163.6 |
| A8 | 50.49 | 121.4 | 114 | 133.4 |
| A9 | 50.18 | 136.2 | 141 | 133.4 |
| A10 | 51.4 | 106 | 116.2 | 108 |
>TRINITY_DN113029_c0_g1_i1 from sample A1 / Example spliced isoformGGGGAAATGGTGAGCTGAGAAAGCCACTGCTTCACTGCTGTAATTATTGATTTTTTATAGTGGAAATTGAGTGCCGGTGCGCTCCGTGGATGTAGGCTTTTGCTGAACCACGAAAACAATCTTGTGTCTCTTATTTTTCTCCATTTTTTGCTTGTGTGTTGTGTATCCCCTGAGCTGTTGTTTAAATCCCAACATTAACA
GTAATCGGATGTTTCTTTTATTTAATCTAGGTATTTTGCCACCCAGGCGTGCCATGCCCTATTGGTTAAATGAATCGTTGAATCGACCACTCCAAGATGAACAATTATCGAATCCGATGACCATTCATTTAACCCATTATCATTTCAGCTTCAATTTCAATGGAATAGTTAATGTAGAAAATCATGGCGATGGCGGCTGC
TGATATGTGGAGGGCGGGCAGTAGGCGCAGCAACGGTTCAGGAATATGGAGGGCAGGGGACGATGTGTTCTCCAGATCATCCAGGGATAGAGATGATATAGACGACGAAGAGGCCTTGAAGTGGGCAGCCTTGTAAAAATTGCCCACTTATGACCGAATCCGCAAGGGGATTCTCCACAGCGTTGCAGGCGAGCATGAGG
AAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAAATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTGCTCAAGCTTCGCAATAGGATCGACAAAGTTGGGATCGAAATACCCAGAATCGAGGTTTTCCTCATCCAGCCGACAACGTTCGCATTTCAATTTTGCACAACATTTTTC
TTAAAGGAGATCAAACCAACGAGTTGGGATATGGAGAGTTGGAGGCTTCTCATCTCTATCCAGATTATAAGTACACCACACTGGATCAATTCCTCCATACCTGTTTTGTTTCACCACCAGAGACAACTCACGTCATTTTGATGGAAAAGTCTCAGAAACACCGTTGGGGTATTTGCAATATAGAGATATTTTCGACTGGT
AACTTTTACATAATTTAGCGATTCCTTTTGGACTTTAGGTTGTGAGTCATCATTATTGTTTAAACACTAAAATTTGTGGTTGGAGTTTCTTTCAAAAGCATAGAAAAATATACTGAGACT
>TRINITY_DN113029_c0_g1_i8 from sample A1 / Example unspliced isoform:GGGGAAATGGTGAGCTGAGAAAGCCACTGCTTCACTGCTGTAATTATTGATTTTTTATAGTGGAAATTGAGTGCCGGTGCGCTCCGTGGATGTAGGCTTTTGCTGAACCACGAAAACAATCTTGTGTCTCTTATTTTTCTCCATTTTTTGCTTGTGTGTTGTGTATCCCCTGAGCTGTTGTTTAAATCCCAACATTAACA
GTAATCGGATGTTTCTTTTATTTAATCTAGGTATTTTGCCACCCAGGCGTGCCATGCCCTATTGGTTAAATGAATCGTTGAATCGACCACTCCAAGATGAACAATTATCGAATCCGATGACCATTCATTTAACCCATTATCATTTCAGCTTCAATTTCAATGGAATAGTTAATGTAGAAAATCATGGCGATGGCGGCTGC
TGATATGTGGAGGGCGGGCAGTAGGCGCAGCAACGGTTCAGGAATATGGAGGGCAGGGGACGATGTGTTCTCCAGATCATCCAGGGATAGAGATGATATAGACGACGAAGAGGCCTTGAAGTGGGCAGCCTTGTAAAAATTGCCCACTTATGACCGAATCCGCAAGGGGATTCTCCACAGCGTTGCAGGCGAGCATGAGG
AAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAAATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTGCTCAAGCTTCGCAATAGGATCGACAAAGTTGGGATCGAAATACCCAGAATCGAGgtccggtatgagcacttgaatgtggatgcagatgtatatgttggtagcagagca
ttgcctaccattcccaactttacagtagaccaaaggctgaaattgggcattctcttgatcactattttattttgatcacacaaattaggttataacggaaattgtaatatatttgttgcagGTTTTCCTCATCCAGCCGACAACGTTCGCATTTCAATTTTGCACAACATTTTTCTTAAAGGAGATCAAACCAACGAGTT
GGGATATGGAGAGTTGGAGGCTTCTCATCTCTATCCAGATTATAAGTACACCACACTGGATCAATTCCTCCATACCTGTTTTGTTTCACCACCAGAGACAACTCACGTCATTTTGATGGAAAAGTCTCAGAAACACCGTTGGGGTATTTGCAATATAGAGATATTTTCGACTGGTAACTTTTACATAATTTAGCGATTCC
TTTTGGACTTTAGGTTGTGAGTCATCATTATTGTTTAAACACTAAAATTTGTGGTTGGAGTTTCTTTCAAAAGCATAGAAAAATATACTGAGACT
Intron 2 GTGAGTTAAT ... CCTTTCCGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 5 | 0 |
| A2 | 100 | 0 | 2 | 2 |
| A3 | 50 | 1 | 2 | 0 |
| A4 | 33.33 | 7 | 7 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 53.49 | 10 | 17 | 6 |
| A7 | 59.03 | 16.3 | 31 | 16 |
| A8 | 44.3 | 22 | 19 | 16 |
| A9 | 58.62 | 24 | 35 | 33 |
| A10 | 58.42 | 21 | 41 | 18 |
>TRINITY_DN43628_c3_g1_i1 from sample A8 / Example spliced isoformTAATCAATTACCCAATCGGCCGCTCCAAGATGATCTGAGCGCTGCCCAAAACCAACTACGGGTGTTCGAGAATCTCAGATGATGGTTTAGATATGAATGATTCATCTTCATGTGCTGTTTGTTTGCGTTGTATTGGGGAGGAGGATGGAGTCCGCATTCTTCCTGTCTGCGTTGATCGCTGGGTTCTCCTATAACAGCAG
ATCTTTGTCAAATATACAGAATGATACATTTCGAGTGGATTACATTCAGAGTATTTGGTTTTGGCTGAAAGAGTCCATCATATTCGAAACGGCGCTCAAAGAAGCTCTGCAATCGGTCTGCAATTCCACACTCTTGGCCAGTAACGACACCCAATCTGACTCCTATCTACGTACTGTTGAATTTTCGTGGTCTATATTTT
CTACGAAAGTGACAAAATCGTGGTCTGTAAAACTAAAGATTTCAGTAGGAAGTTCGTGAGCCTGTCGTGATCTCTATGGTTGGGGTGTCAAAGGGCGTGGCAGGAACTCTCAACTCATCAATATCTTCTTCCTCCAAAACTGAACCTCCTTCTGAAGATATCAGTACAAGAGAAAGCCTACAGAGCGAGAAGCTAAGAAG
CATCGCAGGGGCAGGGACAGGGGCATGGGTAGAGGCGTCCGCACTCGGGATGATTAGAGGCGTCGGTAAGGACCACTCCATAATTGGCAATTGGAGTGATGAATAAACAATTGGATCAATAAGAAGCGGAAGCTAGAAATCGATCGAATCAATAAAAAGCTATTACGGATCCTTGAATCCTTAGAATAACCAAGAAGAAA
GTGTTCGGAATCGTTGAATATGAGGATGGACATGACATGTATTTATATATTTATTTGGGCAATTGCGGAAGTGGATATGTGTGTTGGCTTGAAAGTTAGAAATTATTTGTTTATAAGATTGTGTCAGCTTGAAGGTTAAACGTTAGCTTATTATTATAGCGGTGTAAAAATTTGATAATTTGGAATGTGAGCTTGTTATT
ATAGCTGTGTTAAGCTCCTTGGCGGTTTCTGCATGGCACATAGTGGGTTGTGATACCACCATTGTGTCGATGCGATGCAATACAAGTGCGCCATGTATCCTGATGGTTTATTTACCGCAACCACTTACAACTTTGGCGGTGCGGGCTCCACGATCGCCATTGATTCTTTTGTCTGTCATCTTCGCCGTTAGATTTTGCCG
AGCGTTAACCATTCCAAAAATTTATTCCAAACTATTGCGCCTTTGGGTTTGTATAACTGCTCGGAACAAAGAGATGGCCGTTGGATTGAAGTTCATTCTTGCTTTCTTTGGAATTTTATGCTTCACTCGTATTTTCTATTCAGAAGAAGGTTCAATTGAATGGCAGCGTTGCTAATACTATGTTAAATTGGATTGTGGCT
GGTGCGGTAATACTATGTTAAATTGAGTGTAAAGTTTATTATAAATTCAATAATCTTACAAGAAAAT
>TRINITY_DN43628_c3_g1_i6 from sample A8 / Example unspliced isoform:TAATCAATTACCCAATCGGCCGCTCCAAGATGATCTGAGCGCTGCCCAAAACCAACTACGGGTGTTCGAGAATCTCAGATGATGGTTTAGATATGAATGATTCATCTTCATGTGCTGTTTGTTTGCGTTGTATTGGGGAGGAGGATGGAGTCCGCATTCTTCCTGTCTGCGTTGATCGCTGGGTTCTCCTATAACAGCAG
ATCTTTGTCAAATATACAGAATGATACATTTCGAGTGGATTACATTCAGAGTATTTGGTTTTGGCTGAAAGAGTCCATCATATTCGAAACGGCGCTCAAAGAAGCTCTGCAATCGGTCTGCAATTCCACACTCTTGGCCAGTAACGACACCCAATCTGACTCCTATCTACGTACTGTTGAATTTTCGTGGTCTATATTTT
CTACGAAAGTGACAAAATCGTGGTCTGTAAAACTAAAGATTTCAGTAGGAAGTTCGTGAGCCTGTCGTGATCTCTATGGTTGGGGTGTCAAAGGGCGTGGCAGGAACTCTCAACTCATCAATATCTTCTTCCTCCAAAACTGAACCTCCTTCTGAAGATATCAGTACAAGAGAAAGCCTACAGAGCGAGAAGCTAAGAAG
CAgtgagttaattcgttgaaatttttctttcatttgcaaacgttaatctgtaaattatgcaaggtgatctgctggattatcgatcatctggaagatggctatagctgacgcaaatatggccaaaaggcagtgaagaatagcccctttccgagTCGCAGGGGCAGGGACAGGGGCATGGGTAGAGGCGTCCGCACTCGGGA
TGATTAGAGGCGTCGGTAAGGACCACTCCATAATTGGCAATTGGAGTGATGAATAAACAATTGGATCAATAAGAAGCGGAAGCTAGAAATCGATCGAATCAATAAAAAGCTATTACGGATCCTTGAATCCTTAGAATAACCAAGAAGAAAGTGTTCGGAATCGTTGAATATGAGGATGGACATGACATGTATTTATATAT
TTATTTGGGCAATTGCGGAAGTGGATATGTGTGTTGGCTTGAAAGTTAGAAATTATTTGTTTATAAGATTGTGTCAGCTTGAAGGTTAAACGTTAGCTTATTATTATAGCGGTGTAAAAATTTGATAATTTGGAATGTGAGCTTGTTATTATAGCTGTGTTAAGCTCCTTGGCGGTTTCTGCATGGCACATAGTGGGTTG
TGATACCACCATTGTGTCGATGCGATGCAATACAAGTGCGCCATGTATCCTGATGGTTTATTTACCGCAACCACTTACAACTTTGGCGGTGCGGGCTCCACGATCGCCATTGATTCTTTTGTCTGTCATCTTCGCCGTTAGATTTTGCCGAGCGTTAACCATTCCAAAAATTTATTCCAAACTATTGCGCCTTTGGGTTT
GTATAACTGCTCGGAACAAAGAGATGGCCGTTGGATTGAAGTTCATTCTTGCTTTCTTTGGAATTTTATGCTTCACTCGTATTTTCTATTCAGAAGAAGGTTCAATTGAATGGCAGCGTTGCTAATACTATGTTAAATTGGATTGTGGCTGGTGCGGTAATACTATGTTAAATTGAGTGTAAAGTTTATTATAAATTCAA
TAATCTTACAAGAAAAT
Intron 3 GTGAGTTAAT ... TCTTCGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 5 | 0 |
| A2 | 100 | 0 | 2 | 1 |
| A3 | 66.67 | 1 | 2 | 1 |
| A4 | 50 | 7 | 7 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 62.96 | 10 | 17 | 0 |
| A7 | 64.58 | 17 | 31 | 4 |
| A8 | 46.34 | 22 | 19 | 10 |
| A9 | 59.32 | 24 | 35 | 5 |
| A10 | 66.13 | 21 | 41 | 4 |
>TRINITY_DN43628_c3_g1_i1 from sample A8 / Example spliced isoformTAATCAATTACCCAATCGGCCGCTCCAAGATGATCTGAGCGCTGCCCAAAACCAACTACGGGTGTTCGAGAATCTCAGATGATGGTTTAGATATGAATGATTCATCTTCATGTGCTGTTTGTTTGCGTTGTATTGGGGAGGAGGATGGAGTCCGCATTCTTCCTGTCTGCGTTGATCGCTGGGTTCTCCTATAACAGCAG
ATCTTTGTCAAATATACAGAATGATACATTTCGAGTGGATTACATTCAGAGTATTTGGTTTTGGCTGAAAGAGTCCATCATATTCGAAACGGCGCTCAAAGAAGCTCTGCAATCGGTCTGCAATTCCACACTCTTGGCCAGTAACGACACCCAATCTGACTCCTATCTACGTACTGTTGAATTTTCGTGGTCTATATTTT
CTACGAAAGTGACAAAATCGTGGTCTGTAAAACTAAAGATTTCAGTAGGAAGTTCGTGAGCCTGTCGTGATCTCTATGGTTGGGGTGTCAAAGGGCGTGGCAGGAACTCTCAACTCATCAATATCTTCTTCCTCCAAAACTGAACCTCCTTCTGAAGATATCAGTACAAGAGAAAGCCTACAGAGCGAGAAGCTAAGAAG
CATCGCAGGGGCAGGGACAGGGGCATGGGTAGAGGCGTCCGCACTCGGGATGATTAGAGGCGTCGGTAAGGACCACTCCATAATTGGCAATTGGAGTGATGAATAAACAATTGGATCAATAAGAAGCGGAAGCTAGAAATCGATCGAATCAATAAAAAGCTATTACGGATCCTTGAATCCTTAGAATAACCAAGAAGAAA
GTGTTCGGAATCGTTGAATATGAGGATGGACATGACATGTATTTATATATTTATTTGGGCAATTGCGGAAGTGGATATGTGTGTTGGCTTGAAAGTTAGAAATTATTTGTTTATAAGATTGTGTCAGCTTGAAGGTTAAACGTTAGCTTATTATTATAGCGGTGTAAAAATTTGATAATTTGGAATGTGAGCTTGTTATT
ATAGCTGTGTTAAGCTCCTTGGCGGTTTCTGCATGGCACATAGTGGGTTGTGATACCACCATTGTGTCGATGCGATGCAATACAAGTGCGCCATGTATCCTGATGGTTTATTTACCGCAACCACTTACAACTTTGGCGGTGCGGGCTCCACGATCGCCATTGATTCTTTTGTCTGTCATCTTCGCCGTTAGATTTTGCCG
AGCGTTAACCATTCCAAAAATTTATTCCAAACTATTGCGCCTTTGGGTTTGTATAACTGCTCGGAACAAAGAGATGGCCGTTGGATTGAAGTTCATTCTTGCTTTCTTTGGAATTTTATGCTTCACTCGTATTTTCTATTCAGAAGAAGGTTCAATTGAATGGCAGCGTTGCTAATACTATGTTAAATTGGATTGTGGCT
GGTGCGGTAATACTATGTTAAATTGAGTGTAAAGTTTATTATAAATTCAATAATCTTACAAGAAAAT
>TRINITY_DN43628_c3_g1_i8 from sample A8 / Example unspliced isoform:TAATCAATTACCCAATCGGCCGCTCCAAGATGATCTGAGCGCTGCCCAAAACCAACTACGGGTGTTCGAGAATCTCAGATGATGGTTTAGATATGAATGATTCATCTTCATGTGCTGTTTGTTTGCGTTGTATTGGGGAGGAGGATGGAGTCCGCATTCTTCCTGTCTGCGTTGATCGCTGGGTTCTCCTATAACAGCAG
ATCTTTGTCAAATATACAGAATGATACATTTCGAGTGGATTACATTCAGAGTATTTGGTTTTGGCTGAAAGAGTCCATCATATTCGAAACGGCGCTCAAAGAAGCTCTGCAATCGGTCTGCAATTCCACACTCTTGGCCAGTAACGACACCCAATCTGACTCCTATCTACGTACTGTTGAATTTTCGTGGTCTATATTTT
CTACGAAAGTGACAAAATCGTGGTCTGTAAAACTAAAGATTTCAGTAGGAAGTTCGTGAGCCTGTCGTGATCTCTATGGTTGGGGTGTCAAAGGGCGTGGCAGGAACTCTCAACTCATCAATATCTTCTTCCTCCAAAACTGAACCTCCTTCTGAAGATATCAGTACAAGAGAAAGCCTACAGAGCGAGAAGCTAAGAAG
CAgtgagttaattcgttgaaatttttctttcatttgcaaacgttaatctgtaaattatgcaaggtgatctgctggattatcgatcatctggaagatggctatagctgacgcaaatatggccaaaaggcagtgaagaatagcccctttccgaggttaataatccttctcaaatttctacagcatatgttccagccttacaa
taagttattaatatataagttcaaatctctgaatctgtgacaattatctctgttgttgaattcaaaatgaacgaataagatagctatgttgtataaggtaatatgtaattggaaattcatgaagctgagtttgtgatgggctaaagaatgtgctgagatgagattgtgccgtatagggtctgtggctataaccctttcta
tttgtgcagcaatttccggctcttgcacatgtttcgtaaattctgcaaaataggacgatttctctaacttttccagtgccaactgtacattgttgattatttcttgatatcttgtattttcttcttcggcagTCGCAGGGGCAGGGACAGGGGCATGGGTAGAGGCGTCCGCACTCGGGATGATTAGAGGCGTCGGTAAG
GACCACTCCATAATTGGCAATTGGAGTGA
Intron 4 GTGAACATCA ... GATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.5 | 162 | 17 | 0 |
| A2 | 8.8 | 114 | 11 | 3 |
| A3 | 8.14 | 158 | 14 | 2 |
| A4 | 5.65 | 117 | 7 | 2 |
| A5 | 7.32 | 76 | 6 | 0 |
| A6 | 6.9 | 27 | 2 | 0 |
| A7 | 2.04 | 48 | 1 | 0 |
| A8 | 9.09 | 10 | 1 | 0 |
| A9 | 14.29 | 54 | 9 | 0 |
| A10 | 5.36 | 53 | 3 | 0 |
>TRINITY_DN115096_c7_g1_i10 from sample A3 / Example spliced isoformAGCAGATCTTCCGGAATTTGGAGAGGAGGGGATGATGCGTTCTCCATATCCTCCAGAAGTAGAGATAATGAAGACGATGAAGAGGCCTTGAAGTGGGCGGCCTTGGAGAAATTGCCCACTTACGACCGCATCCGCAAGGGGATTCTCCACAGCGTTGTGGGCGAGCACGAGGAAGTCGATGTCGCCAAGATCGGCTTTCA
AGATCGCCAGCTTCTCATCGATAGATTGCTCAAAATCGCGGCCGAAGATAACGAGCGTTTTCTGCTCAAGCTCCGCAACAGGATTGACAAAGTGGGAATCGACATGCCCAAAATCGAAGTCCGTTTCGATCACTTGAACGTGGATGCAGATGTCTATGTTGGTAGCAGATCGCTGCCTTCTATTCCGAATTTTACCTTGA
ATATGCTGGAGATGTTTTTAGGATTTCTGAAGATCTTCCCAAATAAGAAGAGACCCCTTTCAATCCTTCACGATGTTAGCGGAATCATAAAACCATGCAGAATGACTTTGCTTTTGGGACCGCCAGGCTCAGGGAAAACATCTTTACTCTTGGCTTTGGCTGGCAAGCTCGATTCAGAATTGAGAGTATCTGGCGCTGTG
AC
>TRINITY_DN115096_c7_g1_i6 from sample A3 / Example unspliced isoform:AGCAGATCTTCCGGAATTTGGAGAGGAGGGGATGATGCGTTCTCCATATCCTCCAGAAGTAGAGATAATGAAGACGATGAAGAGGCCTTGAAGTGGGCGGCCTTGGAGAAATTGCCCACTTACGACCGCATCCGCAAGGGGATTCTCCACAGCGTTGTGGGCGAGCACGAGGAAGTCGATGTCGCCAAGATCGGCTTTCA
AGATCGCCAGCTTCTCATCGATAGATTGCTCAAAATCGCGGCCGAAGATAACGAGCGTTTTCTGCTCAAGCTCCGCAACAGGATTGACAAAGTGGGAATCGACATGCCCAAAATCGAAGTCCGTTTCGATCACTTGAACGTGGATGCAGATGTCTATGTTGGTAGCAGATCGCTGCCTTCTATTCCGAATTTTACCTTGA
ATATGCTGGAGATGTTTTTAGGATTTCTGAAGATCTTCCCAAATAAGAAGAGACCCCTTTCAATCCTTCACGATGTTAGCGGAATCATAAAACCATGCAGgtgaacatcaatgtctgcaattaattttctacattcttcttggaatcctcagattgccgacattcttaattgttgatgttaaaccctgttgaattgctgc
aatggttaaagagttttacggatttgaacttgctcggattttgcagAATGACTTTGCTTTTGG
Intron 5 GTGAGCTGAG ... TTTAATCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.57 | 7 | 1 | 15 |
| A2 | 56.87 | 6.5 | 3 | 13 |
| A3 | 69.82 | 5.5 | 9 | 16.5 |
| A4 | 60 | 5.5 | 4 | 12 |
| A5 | 61.3 | 3.5 | 4 | 7 |
| A6 | 75.38 | 8.5 | 22 | 30 |
| A7 | 70.78 | 30 | 51 | 93.5 |
| A8 | 71.84 | 11 | 20 | 36 |
| A9 | 56.63 | 26 | 14 | 53.5 |
| A10 | 74.63 | 16 | 39 | 55 |
>TRINITY_DN48508_c0_g2_i8 from sample A7 / Example spliced isoformGAGAACAGGGGAAATGGTATTTTGCCACCCAGGCGTGCCATGCCCTATTGGTTAAATGAATCGTTGAATCGACCACTCCAAGATGAACAATTATCGAATCCGATGACCATTCATTTAACCCATTATCATTTCAGCTTCAATTTCAATGGAATAGTTAATGTAGAAAATCATGGCGATGGCGGCTGCTGATATGTGGAGGG
CGGGCAGTAGGCGCAGCAACGGTTCAGGAATATGGAGGGCAGCGGACGATGTGTTCTCCAGATCATCCAGGGATAGAGATGATATAGACGACGAAGAGGCCTTGAAGTGGGCAGCCTTGTAAAAATTGCCCACTTATGACCGAATCCGCAAGGAGATTCTCCACAGCGTTGCAGGCGAGCATGAGGAAGTTGATGTCGCC
AAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAGATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTGCTCAAGCTTCGCAATAGGATCGACAAAGTTGGGATCGAAATACCCAGAATCGAGGTTTTCCTCATCCAGCCGACAACGTTCACATTTCAATTTTGCACAACATTTTTCTTAAAGGAGATCAA
ACCAACGAGTTGGGATATGGAGAGTTGGAGGCTTCTCATCTCTATCCAGATTATAAGTACACCACACTGGATCAATTCCTCCATACCTGTTTTGTTTCACCACCAGAGACAACTCACGTCATTTTGATGGAAAAGTCTCAGAAACACCGTTGGGGTATTTGCAATATAGAGATATTTTCGACTGGTAACTTTTACATAAT
TTAGCGATTCCTTTTGGACTTTAGGTTGTGAGTCATCATTATTGTTTAAACACTAAAATTTGTGGTTGGAGTTTCTTTCAAAAGCATAGAAAAATATACTGAGACTCTTTTGAATTAAATTTTTTATAGTTTTTATTAGTTCTTATATTTTTTAATTATTTTGATGTAGGGATG
>TRINITY_DN48508_c0_g2_i9 from sample A7 / Example unspliced isoform:AGAGAACAGGGGAAATGgtgagctgagaaagccactgcttcactgctgtaattattgattttttatagtggaaattgagtgccggtgcgctccgtggatgtaggcttttgctgaaccacgaaaacaatcttgtgtctcttatttttctccattttttgcttgtgtgttgtgtatcccctgagctgttgtttaaatcccaa
cattaacagtaatcggatgtttcttttatttaatctagGTATTTTGCCACCCAGGCGTGCCATGCCCTATTGGTTAAATGAATCGTTGAATCGACCACTCCAAGATGAACAATTATCGAATCCGATGACCATTCATTTAACCCATTATCATTTCAGCTTCAATTTCAATGGAATAGTTAATGTAGAAAATCATGGCGATG
GCGGCTGCTGATATGTGGAGGGCGGGCAGTAGGCGCAGCAACGGTTCAGGAATATGGAGGGCAGCGGACGATGTGTTCTCCAGATCATCCAGGGATAGAGATGATATAGACGACGAAGAGGCCTTGAAGTGGGCAGCCTTGTAAAAATTGCCCACTTATGACCGAATCCGCAAGGAGATTCTCCACAGCGTTGCAGGCGA
GCATGAGGAAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAGATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTGCTCAAGCTTCGCAATAGGATCGACAAGTAAGGAGAAAGTTCATATGTTTTTCTTTCCATTTCATGTTACTGTGCTTCTTGATTTAATTTCACTTCTTGAT
TTTTATGTTTGCTTCTTGATTTAATTTCACTTCTTGATTTTTATGTTTGCTTTTGGTTGATTGGTAATGCACACAGAGTTGGGATCGAAATACCCAGAA
Intron 6 GTAGGCTTTT ... TTTAATCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.74 | 16 | 7 | 15 |
| A2 | 38.1 | 13 | 3 | 13 |
| A3 | 58.06 | 13 | 18 | 18 |
| A4 | 62.16 | 7 | 11 | 12 |
| A5 | 56.52 | 5 | 6 | 7 |
| A6 | 74.26 | 13 | 45 | 30 |
| A7 | 70.67 | 41.3 | 103 | 96 |
| A8 | 77.08 | 11 | 38 | 36 |
| A9 | 55.28 | 36 | 35 | 54 |
| A10 | 72.07 | 25.2 | 75 | 55 |
>TRINITY_DN113029_c0_g1_i6 from sample A1 / Example spliced isoformGGGGAAATGGTGAGCTGAGAAAGCCACTGCTTCACTGCTGTAATTATTGATTTTTTATAGTGGAAATTGAGTGCCGGTGCGCTCCGTGGATGTATTTTGCCACCCAGGCGTGCCATGCCCTATTGGTTAAATGAATCGTTGAATCGACCACTCCAAGATGAACAATTATCGAATCCGATGACCATTCATTTAACCCATTA
TCATTTCAGCTTCAATTTCAATGGAATAGTTAATGTAGAAAATCATGGCGATGGCGGCTGCTGATATGTGGAGGGCGGGCAGTAGGCGCAGCAACGGTTCAGGAATATGGAGGGCAGGGGACGATGTGTTCTCCAGATCATCCAGGGATAGAGATGATATAGACGACGAAGAGGCCTTGAAGTGGGCAGCCTTGTAAAAA
TTGCCCACTTATGACCGAATCCGCAAGGGGATTCTCCACAGCGTTGCAGGCGAGCATGAGGAAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAAATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTGCTCAAGCTTCGCAATAGGATCGACAAAGTTGGGATCGAAATACCCAG
AATCGAGGTCCGGTATGAGCACTTGAATGTGGATGCAGATGTATATGTTGGTAGCAGAGCATTGCCTACCATTCCCAACTTTACAGTAGACCAAAGGCTGAAATTGGGCATTCTCTTGATCACTATTTTATTTTGATCACACAAATTAGGTTATAACGGAAATTGTAATATATTTGTTGCAGGTTTTCCTCATCCAGCCG
ACAACGTTCGCATTTCAATTTTGCACAACATTTTTCTTAAAGGAGATCAAACCAACGAGTTGGGATATGGAGAGTTGGAGGCTTCTCATCTCTATCCAGATTATAAGTACACCACACTGGATCAATTCCTCCATACCTGTTTTGTTTCACCACCAGAGACAACTCACGTCATTTTGATGGAAAAGTCTCAGAAACACCGT
TGGGGTATTTGCAATATAGAGATATTTTCGACTGGTAACTTTTACATAATTTAGCGATTCCTTTTGGACTTTAGGTTGTGAGTCATCATTATTGTTTAAACACTAAAATTTGTGGTTGGAGTTTCTTTCAAAAGCATAGAAAAATATACTGAGACT
>TRINITY_DN113029_c0_g1_i1 from sample A1 / Example unspliced isoform:GGGGAAATGGTGAGCTGAGAAAGCCACTGCTTCACTGCTGTAATTATTGATTTTTTATAGTGGAAATTGAGTGCCGGTGCGCTCCGTGGATgtaggcttttgctgaaccacgaaaacaatcttgtgtctcttatttttctccattttttgcttgtgtgttgtgtatcccctgagctgttgtttaaatcccaacattaaca
gtaatcggatgtttcttttatttaatctagGTATTTTGCCACCCAGGCGTGCCATGCCCTATTGGTTAAATGAATCGTTGAATCGACCACTCCAAGATGAACAATTATCGAATCCGATGACCATTCATTTAACCCATTATCATTTCAGCTTCAATTTCAATGGAATAGTTAATGTAGAAAATCATGGCGATGGCGGCTGC
TGATATGTGGAGGGCGGGCAGTAGGCGCAGCAACGGTTCAGGAATATGGAGGGCAGGGGACGATGTGTTCTCCAGATCATCCAGGGATAGAGATGATATAGACGACGAAGAGGCCTTGAAGTGGGCAGCCTTGTAAAAATTGCCCACTTATGACCGAATCCGCAAGGGGATTCTCCACAGCGTTGCAGGCGAGCATGAGG
AAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAAATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTGCTCAAGCTTCGCAATAGGATCGACAAAGTTGGGATCGAAATACCCAGAATCGAGGTTTTCCTCATCCAGCCGACAACGTTCGCATTTCAATTTTGCACAACATTTTTC
TTAAAGGAGATCAAACCAACGAGTTGGGATATGGAGAGTTGGAGGCTTCTCATCTCTATCCAGATTATAAGTACACCACACTGGATCAATTCCTCCATACCTGTTTTGTTTCACCACCAGAGACAACTCACGTCATTTTGATGGAAAAGTCTCAGAAACACCGTTGGGGTATTTGCAATATAGAGATATTTTCGACTGGT
AACTTTTACATAATTTAGCGATTCCTTTTGGACTTTAGGTTGTGAGTCATCATTATTGTTTAAACACTAAAATTTGTGGTTGGAGTTTCTTTCAAAAGCATAGAAAAATATACTGAGACT
Intron 7 GTAGCAGAGC ... TTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.32 | 12 | 26 | 9 |
| A2 | 58.02 | 17 | 27 | 20 |
| A3 | 72 | 7 | 24 | 12 |
| A4 | 46.67 | 12 | 14 | 7 |
| A5 | 77.78 | 1 | 6 | 1 |
| A6 | 61.86 | 74 | 109 | 131 |
| A7 | 62.35 | 93 | 144 | 164 |
| A8 | 61.95 | 74 | 107 | 134 |
| A9 | 62.65 | 76 | 121 | 134 |
| A10 | 62.02 | 64 | 101 | 108 |
>TRINITY_DN115096_c7_g1_i12 from sample A3 / Example spliced isoformTAAAAATTGCCCACTTATGACCGAATCCGCAAGGAGATTCTCCACAGCGTTGCAGGCGAGCATGAGGAAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAAATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTGCTCAAGCTTCGCAATAGGATCGACAAAGTTGGGATCGAAAT
ACCCAGAATCGAGGTCCGGTATGAGCACTTGAATGTGGATGTAGATGTATATGTTGGTTTTCCTCATCCAGCCGACAACGTTCGCATTTCAATTTTGCACAACATTTTTCTTAAAGGAGATCAAACCAACGAGTTGGGATATGGAGAGTTGGAGGCTTCTCATCTCTATCCAGATTATAAGTACACCACACTGGATCAAT
TCCTCCATACCTGTTTTGTTTCACCACCAGAGACAACTCACGTCATTTTGATGGAAAAGTCTCAGAAACACCGTTGGGGTATTTGCAATATAGAGATATTTTCGACTGGTAACTTTTACATAATTTAGCGATTCCTTTTGGACTTTAGGTTGTGAGTCATCATTATTGTTTAAACACTAAAATTTGTGGTTGGAGTTTCT
TTCAAAAGCATAGAAAAATATACTGAGACTCTTTTGAATTAAATTTTTTATAGTTTTTATTAGTTTTTATTAGTTTTTATATTTTTTAATTATTTTGATGTAGGGATGCCTTTGCTTAAGTTTACCATGTTTCATTATAGATTTCTAAAATGGAAATAATAATAATAATTTATTATGATGGTTTAAAGTTAATTTTCTTT
GGGGATTTATGGTGATCATACATGGTGAGCATAATCTAAAAGATTATGCTTTAATTAAATTGGATATACTAGCTGATATTGTTATACTGAATCCTCTTCTTTGCCTTGATAAGAACATGTATGATATAAGCACATAGCTTGAATCCATTCTTTGTTGTTTGATGGACCAGAATATGTTCGTTGTGCCTTAAATGCTCATG
TTCTGTGTTGGGTACATGTGAAAAGATTGCCATGAGGTCTTATAGAGTTGCTCCTTAATTTACCATGTCATGTCTCGGAATTCAGCAGCTGTTGAACGTTGTCTTTTGCGGTCCTTAAGAAAACC
>TRINITY_DN115096_c7_g1_i11 from sample A3 / Example unspliced isoform:TAAAAATTGCCCACTTATGACCGAATCCGCAAGGAGATTCTCCACAGCGTTGCAGGCGAGCATGAGGAAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAAATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTGCTCAAGCTTCGCAATAGGATCGACAAAGTTGGGATCGAAAT
ACCCAGAATCGAGGTCCGGTATGAGCACTTGAATGTGGATGTAGATGTATATGTTGgtagcagagcattgcctaccattcccaactttacagtagaccaaaggctgaaattgggcattctcttgatcactattttattttgatcacacaaattaggttataacggaaattgtaatatatttgttgcagGTTTTCCTCATC
CAGCCGACAACGTTCGCATTTCAATTTTGCACAACATTTTTCTTAAAGGAGATCAAACCAACGAGTTGGGATATGGAGAGTTGGAGGCTTCTCATCTCTATCCAGATTATAAGTACACCACACTGGATCAATTCCTCCATACCTGTTTTGTTTCACCACCAGAGACAACTCACGTCATTTTGATGGAAAAGTCTCAGAAA
CACCGTTGGGGTATTTGCAATATAGAGATATTTTCGACTGGTAACTTTTACATAATTTAGCGATTCCTTTTGGACTTTAGGTTGTGAGTCATCATTATTGTTTAAACACTAAAATTTGTGGTTGGAGTTTCTTTCAAAAGCATAGAAAAATATACTGAGACTCTTTTGAATTAAATTTTTTATAGTTTTTATTAGTTTTT
ATTAGTTTTTATATTTTTTAATTATTTTGATGTAGGGATGCCTTTGCTTAAGTTTACCATGTTTCATTATAGATTTCTAAAATGGAAATAATAATAATAATTTATTATGATGGTTTAAAGTTAATTTTCTTTGGGGATTTATGGTGATCATACATGGTGAGCATAATCTAAAAGATTATGCTTTAATTAAATTGGATATA
CTAGCTGATATTGTTATACTGAATCCTCTTCTTTGCCTTGATAAGAACATGTATGATATAAGCACATAGCTTGAATCCATTCTTTGTTGTTTGATGGACCAGAATATGTTCGTTGTGCCTTAAATGCTCATGTTCTGTGTTGGGTACATGTGAAAAGATTGCCATGAGGTCTTATAGAGTTGCTCCTTAATTTACCATGT
CATGTCTCGGAATTCAGCAGCTGTTGAACGTTGTCTTTTGCGGTCCTTAAGAAAACC
Intron 8 GTTAATAATC ... TCTTCGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 4 | 0 |
| A2 | 50 | 2 | 3 | 1 |
| A3 | 100 | 0 | 2.5 | 1 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 16.66 | 6 | 0 | 3 |
| A7 | 29.41 | 14.5 | 4.5 | 7.5 |
| A8 | 35.04 | 15.5 | 2.5 | 14.5 |
| A9 | 32.23 | 28 | 15.5 | 10.5 |
| A10 | 23.07 | 15.5 | 4 | 5.5 |
>TRINITY_DN43628_c3_g1_i2 from sample A8 / Example spliced isoformGCCACGTGGGAGTCCGTTGGTTAATTCTCTGTTCGGCCACTCCAAGATGATCTTTATCAATAAGATGATCAATTCTTGGTTCGGCTGCTCCAAGATGATCTGTTCCGCCGCTCCAAGATGATCTGAGCGCTGCCCAAAACCAACTACGGGTGTTTGAGAATCTCATATGATGGTTTAGATATGAATGATTCATCTTCATG
TGCTGTTTGTTTGCGTTGTATTGGGGAGGAGGATGGAGTCCGCATTCTTCCTGTCTGCGTTGATCGCTGGGTTCTCCTATAACAGCAGATCTTTGTCAAATATACAGAATGATACATTTCGAGTGGATTACATTCAGAGTATTTGGTTTTGGCTGAAAGAGTCCATCATATTCGAAACGGCGCTCAAAGAAGCTCTGCAA
TCGGTCTGCAATTCCACACTCTTGGCCAGTAACGACACCCAATCTGACTCCTATCTACGTACTGTTGAATTTTCGTGGTCTATATTTTCTACGAAAGTGACAAAATCGTGGTCTGTAAAACTAAAGATTTCAGTAGGAAGTTCGTGAGCCTGTCGTGATCTCTATGGTTGGGGTGTCAAAGGGCGTGGCAGGAACTCTCA
ACTCATCAATATCTTCTTCCTCCAAAACTGAACCTCCTTCTGAAGATATCAGTACAAGAGAAAGCCTACAGAGCGAGAAGCTAAGAAGCAGTGAGTTAATTCGTTGAAATTTTTCTTTCATTTGCAAACGTTAATCTGTAAATTATGCAAGGTGATCTGCTGGATTATCGATCATCTGGAAGATGGCTATAGCTGACGCA
AATATGGCCAAAAGGCAGTGAAGAATAGCCCCTTTCCGAGTCGCAGGGGCAGGGACAGGGGCATGGGTAGAGGCGTCCGCACTCGGGATGATTAGAGGCGTCGGTAAGGACCACTCCATAATTGGCAATTGGAGTGACGAATAAACGAATGGATCAATAAGAAGCGGGAGTTAGAAATCGATCGAATCAATAAAAAGCTA
TTACAAATCCTTAGAAGAAAGTGTTCGGAATCGTTGAATATGAGGATGGACATGACATGTATTTATATATTTATTTGGGCAATTGCGGAAGTGGATATGTGTGTTGGCTTGAAAGTTAGAAATTATTTGTTTATAAGATTGTGTCAGCTTGAAGGTTAAACGTTAGCTTATTATTATAGCGGTGTAAAAATTTGATAATT
TGGAATGTGAGCTTGTTATTATAGCTGTGTATAGCTGTGTTAAGCTCCTTGGCGGTTTCTGCATGGCACATAGTGGGTTGTGATACCACCATTGTGTCGATGCGATGCAATACAAGTGCGCCATGTATCCTGATGGTTTATTTACCGCAACCACTTACAACATATTGCAAATGTGCTTTTTGGCGGTGCGGCGCTCCACG
ATCGCCATTGATTCTTTTGTCTATCATCTACGCCGTTAGATTTTGCCGAGCGTTAACCATTCCAAAAATTTATTCCAAACTATTGCGCCTTTGGGTTTGTATAACTGCTCGGAACAAAGAGATGGCCGTTGGATTGAAGTTCATTCTTGCTTTCTTTGGAATTTTATGCTTCACTCGTATTTTCTATTCAGAAGAAGGTT
CAATTGAATGGCAGCGTTGCTAATACTATGTTAAATTGGATTGTGGCTGGTGCGGTAATACTATGTTAAATTGAGTGTAAAGTTTATTATAAATTCAATAATCTTACAAGAAAAT
>TRINITY_DN43628_c3_g1_i8 from sample A8 / Example unspliced isoform:TAATCAATTACCCAATCGGCCGCTCCAAGATGATCTGAGCGCTGCCCAAAACCAACTACGGGTGTTCGAGAATCTCAGATGATGGTTTAGATATGAATGATTCATCTTCATGTGCTGTTTGTTTGCGTTGTATTGGGGAGGAGGATGGAGTCCGCATTCTTCCTGTCTGCGTTGATCGCTGGGTTCTCCTATAACAGCAG
ATCTTTGTCAAATATACAGAATGATACATTTCGAGTGGATTACATTCAGAGTATTTGGTTTTGGCTGAAAGAGTCCATCATATTCGAAACGGCGCTCAAAGAAGCTCTGCAATCGGTCTGCAATTCCACACTCTTGGCCAGTAACGACACCCAATCTGACTCCTATCTACGTACTGTTGAATTTTCGTGGTCTATATTTT
CTACGAAAGTGACAAAATCGTGGTCTGTAAAACTAAAGATTTCAGTAGGAAGTTCGTGAGCCTGTCGTGATCTCTATGGTTGGGGTGTCAAAGGGCGTGGCAGGAACTCTCAACTCATCAATATCTTCTTCCTCCAAAACTGAACCTCCTTCTGAAGATATCAGTACAAGAGAAAGCCTACAGAGCGAGAAGCTAAGAAG
CAGTGAGTTAATTCGTTGAAATTTTTCTTTCATTTGCAAACGTTAATCTGTAAATTATGCAAGGTGATCTGCTGGATTATCGATCATCTGGAAGATGGCTATAGCTGACGCAAATATGGCCAAAAGGCAGTGAAGAATAGCCCCTTTCCGAGgttaataatccttctcaaatttctacagcatatgttccagccttacaa
taagttattaatatataagttcaaatctctgaatctgtgacaattatctctgttgttgaattcaaaatgaacgaataagatagctatgttgtataaggtaatatgtaattggaaattcatgaagctgagtttgtgatgggctaaagaatgtgctgagatgagattgtgccgtatagggtctgtggctataaccctttcta
tttgtgcagcaatttccggctcttgcacatgtttcgtaaattctgcaaaataggacgatttctctaacttttccagtgccaactgtacattgttgattatttcttgatatcttgtattttcttcttcggcagTCGCAGGGGCAGGGACAGGGGCATGGGTAGAGGCGTCCGCACTCGGGATGATTAGAGGCGTCGGTAAG
GACCACTCCATAATTGGCAATTGGAGTGA
Intron 9 GTATGAGCAC ... TTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.54 | 5 | 7 | 9 |
| A2 | 60.78 | 10 | 11 | 20 |
| A3 | 79.31 | 3 | 11 | 12 |
| A4 | 71.43 | 3 | 8 | 7 |
| A5 | 100 | 0 | 3 | 1 |
| A6 | 59.6 | 61 | 49 | 131 |
| A7 | 61.52 | 71 | 63 | 164 |
| A8 | 60.51 | 62 | 56 | 134 |
| A9 | 61.84 | 58 | 54 | 134 |
| A10 | 61.09 | 50 | 49 | 108 |
>TRINITY_DN43758_c0_g1_i8 from sample A9 / Example spliced isoformCAAGCAGAGAACAGGGGAAATGGTGAGCTGAGAAAGCCACTGCTTCACTGCTGTAATTATTGATTTTTTATAGTGGAAATTGAGTGCCGGTGCGCTCCGTGGATGTAGGCTTTTGCTGAACCACGAAAACAATCTTGTGTCTCTTATTTTTCTCCATTTTTTGCTTGTGTGTTGTGTATCCCCTGAGCTGTTGTTTAAAT
CCCAACATTAACAGTAATCGGATGTTTCTTTTATTTAATCTAGGTATTTTGCCACCCAGGCGTGCCATGCCCTATTGGTTAAATGAATCGTTGAATCGACCACTCCAAGATGAACAATTATCGAATCCGATGACCATTCATTTAACCCATTATCATTTCAGCTTCAATTTCAATGGAATAGTTAATGTAGAAAATCATGG
CGATGGCGGCTACTGATATGTGGAGGGCGGGCAGTAGGCGCAGCAACGGTTCAGGAATATGGAGGGCAGCGGACGATGTGTTCTCCAGATCATCCAGGGATAGAGATGATATAGACGACGAAGAGGCCTTGAAGTGGGCAGCCTTGTAAAAATTGCCCACTTATGACCGAATCCGCAAGGAGATTCTCCACAGCGTTGCA
GGCGAGCATGAGGAAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAGATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTACTCAAGCTTCGCAATAGGATCGACAAAGTTGGGATTGAAATACCGAGAATCGAGGTCTCGTATGAGCACTTGAATGTGGATGCGAAATACCCAGA
ATCGAGGTCCGGTTTTCCTCATCCAGCCGACAACGTTCGCATTTCAATTTTGCACAACATTTTTCTTAAAGGAGATCAAACCAACGAGTTGGGATATGGAGAGTTGGAGGCTTCTCATCTCTATCCAGATTATAAGTACACCACACTGGATCAATTCCTCCATACCTGTTTTGTTTCACCACCAGAGACAACTCACGTCA
TTTTGATGGAAAAGTCTCAGAAACACCGTTGGGGTATTTGCAATATAGAGATATTTTCGACTGGTAACTTTTACATAATTTAGCGATTCCTTTTGGACTTTAGGTTGTGAGTCATCATTATTGTTTAAACACTAAAATTTGTGGTTGGAGTTTCTTTCAAAAGCATAGAAAAATATACTGAGG
>TRINITY_DN43758_c0_g1_i2 from sample A9 / Example unspliced isoform:CAAGCAGAGAACAGGGGAAATGGTGAGCTGAGAAAGCCACTGCTTCACTGCTGTAATTATTGATTTTTTATAGTGGAAATTGAGTGCCGGTGCGCTCCGTGGATGTAGGCTTTTGCTGAACCACGAAAACAATCTTGTGTCTCTTATTTTTCTCCATTTTTTGCTTGTGTGTTGTGTATCCCCTGAGCTGTTGTTTAAAT
CCCAACATTAACAGTAATCGGATGTTTCTTTTATTTAATCTAGGTATTTTGCCACCCAGGCGTGCCATGCCCTATTGGTTAAATGAATCGTTGAATCGACCACTCCAAGATGAACAATTATCGAATCCGATGACCATTCATTTAACCCATTATCATTTCAGCTTCAATTTCAATGGAATAGTTAATGTAGAAAATCATGG
CGATGGCGGCTACTGATATGTGGAGGGCGGGCAGTAGGCGCAGCAACGGTTCAGGAATATGGAGGGCAGCGGACGATGTGTTCTCCAGATCATCCAGGGATAGAGATGATATAGACGACGAAGAGGCCTTGAAGTGGGCAGCCTTGTAAAAATTGCCCACTTATGACCGAATCCGCAAGGAGATTCTCCACAGCGTTGCA
GGCGAGCATGAGGAAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAGATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTACTCAAGCTTCGCAATAGGATCGACAAAGTTGGGATTGAAATACCGAGAATCGAGGTCTCGTATGAGCACTTGAATGTGGATGCGAAATACCCAGA
ATCGAGGTCCGgtatgagcacttgaatgtggatgtagatgtatatgttggtagcagagcattgcctaccattcccaactttacagtagaccaaaggctgaaattgggcattctcttgatcactattttattttgatcacacaaattaggttataacggaaattgtaatatatttgttgcagGTTTTCCTCATCCAGCCGA
CAACGTTCGCATTTCAATTTTGCACAACATTTTTCTTAAAGGAGATCAAACCAACGAGTTGGGATATGGAGAGTTGGAGGCTTCTCATCTCTATCCAGATTATAAGTACACCACACTGGATCAATTCCTCCATACCTGTTTTGTTTCACCACCAGAGACAACTCACGTCATTTTGATGGAAAAGTCTCAGAAACACCGTT
GGGGTATTTGCAATATAGAGATATTTTCGACTGGTAACTTTTACATAATTTAGCGATTCCTTTTGGACTTTAGGTTGTGAGTCATCATTATTGTTTAAACACTAAAATTTGTGGTTGGAGTTTCTTTCAAAAGCATAGAAAAATATACTGAGG
Intron 10 GTAAGGAGAA ... ATGCACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.27 | 24 | 9 | 0 |
| A2 | 20 | 8 | 2 | 0 |
| A3 | 28 | 18 | 7 | 0 |
| A4 | 12.5 | 14 | 2 | 0 |
| A5 | 11.11 | 8 | 1 | 0 |
| A6 | 25.6 | 93 | 32 | 2 |
| A7 | 25.58 | 128 | 44 | 0 |
| A8 | 20.88 | 72 | 19 | 0 |
| A9 | 15.83 | 101 | 19 | 1 |
| A10 | 32.82 | 88 | 43 | 3 |
>TRINITY_DN48508_c0_g2_i10 from sample A7 / Example spliced isoformAGAGAACAGGGGAAATGGTGAGCTGAGAAAGCCACTGCTTCACTGCTGTAATTATTGATTTTTTATAGTGGAAATTGAGTGCCGGTGCGCTCCGTGGATGTAGGCTTTTGCTGAACCACGAAAACAATCTTGTGTCTCTTATTTTTCTCCATTTTTTGCTTGTGTGTTGTGTATCCCCTGAGCTGTTGTTTAAATCCCAA
CATTAACAGTAATCGGATGTTTCTTTTATTTAATCTAGGTATTTTGCCACCCAGGCGTGCCATGCCCTATTGGTTAAATGAATCGTTGAATCGACCACTCCAAGATGAACAATTATCGAATCCGATGACCATTCATTTAACCCATTATCATTTCAGCTTCAATTTCAATGGAATAGTTAATGTAGAAAATCATGGCGATG
GCGGCTGCTGATATGTGGAGGGCGGGCAGTAGGCGCAGCAACGGTTCAGGAATATGGAGGGCAGCGGACGATGTGTTCTCCAGATCATCCAGGGATAGAGATGATATAGACGACGAAGAGGCCTTGAAGTGGGCAGCCTTGTAAAAATTGCCCACTTATGACCGAATCCGCAAGGAGATTCTCCACAGCGTTGCAGGCGA
GCATGAGGAAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAGATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTGCTCAAGCTTCGCAATAGGATCGACAAAGTTGGGATCGAAATACCCAGAATCGAGGTTTTCCTCATCCAGCCGACAACGTTCACATTTCAATTTTGCACAA
CATTTTTCTTAAAGGAGATCAAACCAACGAGTTGGGATATGGAGAGTTGGAGGCTTCTCATCTCTATCCAGATTATAAGTACACCACACTGGATCAATTCCTCCATACCTGTTTTGTTTCACCACCAGAGACAACTCACGTCATTTTGATGGAAAAGTCTCAGAAACACCGTTGGGGTATTTGCAATATAGAGATATTTT
CGACTGGTAACTTTTACATAATTTAGCGATTCCTTTTGGACTTTAGGTTGTGAGTCATCATTATTGTTTAAACACTAAAATTTGTGGTTGGAGTTTCTTTCAAAAGCATAGAAAAATATACTGAGACTCTTTTGAATTAAATTTTTTATAGTTTTTATTAGTTCTTATATTTTTTAATTATTTTGATGTAGGGATG
>TRINITY_DN48508_c0_g2_i9 from sample A7 / Example unspliced isoform:AGAGAACAGGGGAAATGGTGAGCTGAGAAAGCCACTGCTTCACTGCTGTAATTATTGATTTTTTATAGTGGAAATTGAGTGCCGGTGCGCTCCGTGGATGTAGGCTTTTGCTGAACCACGAAAACAATCTTGTGTCTCTTATTTTTCTCCATTTTTTGCTTGTGTGTTGTGTATCCCCTGAGCTGTTGTTTAAATCCCAA
CATTAACAGTAATCGGATGTTTCTTTTATTTAATCTAGGTATTTTGCCACCCAGGCGTGCCATGCCCTATTGGTTAAATGAATCGTTGAATCGACCACTCCAAGATGAACAATTATCGAATCCGATGACCATTCATTTAACCCATTATCATTTCAGCTTCAATTTCAATGGAATAGTTAATGTAGAAAATCATGGCGATG
GCGGCTGCTGATATGTGGAGGGCGGGCAGTAGGCGCAGCAACGGTTCAGGAATATGGAGGGCAGCGGACGATGTGTTCTCCAGATCATCCAGGGATAGAGATGATATAGACGACGAAGAGGCCTTGAAGTGGGCAGCCTTGTAAAAATTGCCCACTTATGACCGAATCCGCAAGGAGATTCTCCACAGCGTTGCAGGCGA
GCATGAGGAAGTTGATGTCGCCAAGATCGGCTTTCAAGATCGTCGGTTCTTGATCGACAGATTGCTCAAAATTGCTGATGAAGATAACGAGTGCTTTCTGCTCAAGCTTCGCAATAGGATCGACAAgtaaggagaaagttcatatgtttttctttccatttcatgttactgtgcttcttgatttaatttcacttcttgat
ttttatgtttgcttcttgatttaatttcacttcttgatttttatgtttgcttttggttgattggtaatgcacacagAGTTGGGATCGAAATACCCAGAA