sp|F4HY56|RLT1_ARATH ----> Homeobox-DDT domain protein RLT1
Intron 1 GTTAGTGCAA ... TTTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.46 | 619 | 136 | 108 |
| A2 | 15.11 | 503 | 127 | 52 |
| A3 | 17.07 | 498 | 144 | 61 |
| A4 | 18.18 | 351 | 98 | 58 |
| A5 | 14.55 | 138 | 26 | 21 |
| A6 | 15.39 | 877 | 199 | 120 |
| A7 | 16.65 | 2344.5 | 688 | 249 |
| A8 | 14.66 | 2862 | 615 | 368 |
| A9 | 15.55 | 2014.8 | 519 | 223 |
| A10 | 15.91 | 1750 | 510 | 152 |
>TRINITY_DN44531_c0_g1_i3 from sample A6 / Example spliced isoformGGCAGGCGGGCAGAGAAAAAATTAAAAAGGGGCACCTAGGGTAGGGACTGGGGGTTGAAATAAATTCCGTCTCGTAAATCCCGTTAAATTGATTTTATGTAAGTTAAAGGATTAAACCGCTGTGAATGGCAGCTGTTTTCTGGTGCCACGGATGATATATGCTTTGACTCGTCTTTGATGGCGAGCTAAGCTAGCTTGCG
GAATCATCATCATCATTCATCATACAACAACATGCTATGCTACTACATCCAACACCAACAACAACAACACCATCCTTCTGCTAACTGCCTGTTGTTATTGCTTCTTACTGGTGCTGCTGGTCTTGGGGTTGGATTTGGATTTGGGGTTGGGGTTTGAGTTGGAGTTTGGGTTGGGTTTGTTAGTTACCGTAGAATAGAAT
AGAATAGAAATTGGCAGAAAATAGAATTTTGGGTAGCTGCAGCCAGCCAGCCAGCCAGGAAGCAGCAGGAGGGGGCAGGATTAGGGGACTTGTGTGTTTTATGTAATTGCATGATATGATGGGGATGGTGTTGTTAGTGCTAGTATTACTACAACAACAAAAACAACTACTGAGTTATTGTGGTGTGTCGATGACATTGA
AGCAACCAAAAGCTAAACACCGAGTGGTAGTCATAGTAGAAGAACAAGGAGGATACCATGGTAGTTGGGTAAGGAGGATACCTAGTGTGGGAGATTGGAGGATTTTTGCGGATGGCCTGCCCGGGTTTCGTGCTCGCGGCGTCTCGATGCATATGCTGCGTTGCCGCTTCTGTGTTTGCATCTTCATATATCTCCTCCTC
CTGTTAATTCCTACGACCCATTCCTGGTTTTCTTGTTCTTGTTCTGGTTCTGGTTCTGCTGCCGTACACTGCGGGTTCGAGTCTTTCCCCCTCTCGCTTTCCCTCCGCCTGACCCTTTTGCCTTCTTAGTCCGTCTGCGTAAGGGAAACTACTTGTTGTGCGCTCCCAGGGTCTGCTGCGGCTGCTGAGGGTTTCGCCTG
CTTTTCTCTTTATTTCCTTTTCCCGAGTGCAGAGAGCGCGGCTCTTTTGTGCCCTGTCTTTAAGATCTGTTTAAGATCGAGCCTGGAATCCTCACGTCTTCCAGATCGGATGCCTGCTAGGGTTCTGAAGATGTGTTTTAATCTAAAGATCGATGCAAGACCGGGCCGTGGGATTTGAACACTCGCGCTTTGGTTTGTCC
GTGCACGGATTTTCCGATCTGTAGGGTTTCTTTTTTGTTTTCTGAAACTGCCGTCTCAGCGGTCCGGTGTATTCAGCAGGCGGATCCTGCTTCGCCGTTTGTTTGCCGTGAAGGAAATCGAACTTGCTGCCCGAGTGCCATAGGTTTTTGCGTTTTCCGTTTCAGATTGAAGCAATATGGAGTCCGAGGAAGACAAAATA
TCTCCAGAGAACAAGAAAAGAAGATTAAAAACCCCACAGCAGGTGGAAGGTTTAGAGAGCTTTTATTCTGAACACAAGTATCCTTCAGAAGCCATGAAAGCACAGTTATCAGAAGAGCTAGGATTAACAGAGAAGCAAGTACAGGGATGGTTCTGTCACAGGAGGCTCAAGGATAAAAGGCTTATGAAGGAAGAAGCTGG
CAACAATGGAAAACAAGATCAACAGAATGGCATAATGCAAGATTCTGTTAATGCAGTCAAACAAGATTCCAGCGGTAGTGGAAAAAAAACTGATCATCAACGCCATCTGAGGTGTAAAGAGGTTGAAAATCAACGGTTTGTGAATGCCATTGATTATCCTGCAGCTGTCCTTGCATCAGAGCTTAGGGACCACGATTTGT
TCAAAGTAAACCATGATAATATGGAAGACACCTTTGCAGGAAGTAGTTCAGCTTCACAAGAGAGATCATCATTGCAGAGTGGGAATCCCTATGAAACTGAGGCAAGGAGACGCCCATTTCAAAATGGTAAGCATTATGAATTCGAAGGAAAGAGGAAGAACAGAAGCTCGTATATGGATCCATACTCAGAAGAGAATGGT
GAACATGAGGCTATTACTGCTGTTAGGGAGCAGCTAGGTGATGAATATCGAGAAGATGGCCCGCCACTGGGTGTTGAATTTCATCCTCTCCCCCCTGGTGCATTTGATGACTCAACAGAGCCCCACTACCAGGGTAATATTGTTGTCCAGGATCACCAGAGAATGCCAAAGAAGATGATGGAACAAGATGCTCGCAAAAT
GTTTCGTCCAGAAGCCTTCCATACTACCTGTTCTTCAGGAGTAGGATCAGGCTACTTGTCTATTCCTGGGGGTCTCAAGTTTGAACGGGCATCTCCTAAGTTTGAACGAGCCTCGCCAAAATATGAATGGGCCCCTTATTCTAAGCACGAGTCCTTAAATAGCAAATCCACATGGAGGCCTGCAAACAATCATCTACAAA
TAAGTGATAATTATCATGTGCCTGATCTGAATTCTTCAATGCAGTTGGATGAAGATTCTCCTGATGAATCCCCATCATCTGGATTTGTCACAAAAAGCTATCCAGCTTGGCACAAGCAAGAAGCTGCAGGAAGAATGAGTTCTGATGCTCATTTGCCACTTCCATATGGAAGTAAGAATGGGACTATCCCTGGAAAAGTT
CTAAATGCAGGCAAAGAATTCTCCATCTCCCGTCCTTATAATGCTGGGGATGTATATCATGATGCGTCTGGAGTAAATCCAAATGTGAAAGCTGCAGTGCCTCTTGTGCAAAATCGTGATATGCTGTCATCTCAAGGAGAAGATAAATCCCAGCCAAAAAAAATGACAAAGAGGGAAAGGCTTAGAGAGGAAAGAAAAAT
TAAAAAAGAGCAGGATAGTGCACTGAGATTGAAGCAGAAATTAATTCCGAAGGAGGAAAAGATGAATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAATAGGAAGCCGAGAGAGGTTGCCAAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGGGCATATTGTAGAAATTCCAAGCA
ATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGACGTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAATCCTCCACTGTTTCTATTATCTCTTTAGGGAATCAGGTTGACAATTTCCAAAAGCTGAAATAATAATTGAAGAGAGCGTATGGTGTATATAATTCTA
TTCATCATCTTTTGGTCAGTGACAAAATCACTTTACAAAATCGAACTTTAAGATCCGGATGGTTCAAAGTTTTGTATATGAAATTTCCAAGTCTACAAGTCTTCTGTAACATTTCAACTGTCAGATACATATTGCTCCTGCTAGTTGTTTGCGGAGCAATTATTTAAAAATGTTGTTCTGTAATATCTCTCAATCAACCA
TTGATTCAAGGAGATTTTCTAAATGCCGTGTTTTGTACACTGCTTGTGGTTCCGACTCTTCACTGTAGAGGCTTAGTGAAGCAAATCATTGATGCTATTAAGAGAGCCTAGTTTAAAAGATGGCATCTCCCAAGTAATGCAGATCACACATTTAAACTAACAGAGGTCTTAATAATTCAGATGAATGCATAATAAAAAAG
GACAAAGTTATCTGGAAATCATTCGCACTCGAGCACTAGAATAAATTTTTATTCTTGCTCTAAAATTCATGGGGTAGTCAGACATATATATTTGAAGAAATCATTCAGGTATTTTTTTCACAACATATTGTGAATGCGAAACTTTCAAATTGTTTTGTACTCGAGTGAAGGAGGTGTTTAGTAGAAATAATATTGTGCGC
CTGATTCTGTGTAGCATAACTAGTTATAAAGGATTTGAGTCAATAATATATTGCAGAAACACTAGTAGAAGACTTTTAGCTGACCATATTTTTCAAGGGATATGCAACAGTGCTATGATTTAAACTGGTTCTAACAATTGTGGACTTGTGATTCACGATGCAAGTTGAGTCACTGTTTTGGGTCGTAGGGGTCCCCCACC
CCACCCAAAAGGGCAACAGCATGGTACTAAAAGCACTCGAGACACTGAAATGCCC
>TRINITY_DN44531_c0_g1_i2 from sample A6 / Example unspliced isoform:TCCAAACATACTTGATGGAACTCTATTTCTTGTGCAAGTATAAAATTGGTATTGGTTCCAAAGATTGTCCTTTCAACTGATCGGAATGTGCCCATGATCTGTTTATTGTAGAGGGAAAGGCTTAGAGAGGAAAGAAAAATTAAAAAAGAGCAGGATAGTGCACTGAGATTGAAGCAGAAATTAATTCCGAAGGAGGAAAA
GATGGTAAGTATACTTGAGATGGCAGTTTACTGTTCAGAAATTTGCAGCTTGTATATTTGAGCTAGGTTGAGAAGAGCTTAATGTTCGCGTGCATTAGATGTACTGTAGATTGACTATTTTATAAATGATTTCCAACTTACAGAATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAATAGGAAGCCGAGAGAGGTT
GCCAAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGGgttagtgcaattgaatgatatttgagttgtttaaatttgtagcgaactccagttttattcaaagtccttttttggaatttacatgaagacaaaatacaagatcgttttaatgtgcatggttttgggataacttcatttaattct
gtttatatatttcataccatcttgaagttatacaaagctatggatcaatatgtccattatttgtagagggcattttcttttgtttgctgatattcacggatggaatttgttttcttgcagGCATATTGTAGAAATTCCAAGCAATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGAC
GTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAATCCTCCACTGTTTCTATTATCTCTTTAGGGAATCAGGTTGACAATTTCCAAAAGCTGAAATAATAATTGAAGAGAGCGTATGGTGTATATAATTCTATTCATCATCTTTTGGTCAGTGACAAAATCACTTTACAAAATCGAACTTTAAGATCCG
GATGGTTCAAAGTTTTGTATATGAAATTTCCAAGTCTACAAGTCTTCTGTAACATTTCAACTGTCAGATACATATTGCTCCTGCTAGTTGTTTGCGGAGCAATTATTTAAAAATGTTGTTCTGTAATATCTCTCAATCAACCATTGATTCAAGGAGATTTTCTAAATGCCGTGTTTTGTACACTGCTTGTGGTTCCGACT
CTTCACTGTAGAGGCTTAGTGAAGCAAATCATTGATGCTATTAAGAGAGCCTAGTTTAAAAGATGGCATCTCCCAAGTAATGCAGATCACACATTTAAACTAACAGAGGTCTTAATAATTCAGATGAATGCATAATAAAAAAGGACAAAGTTATCTGGAAATCATTCGCACTCGAGCACTAGAATAAATTTTTATTCTTG
CTCTAAAATTCATGGGGTAGTCAGACATATATATTTGAAGAAATCATTCAGGTATTTTTTTCACAACATATTGTGAATGCGAAACTTTCAAATTGTTTTGTACTCGAGTGAAGGAGGTGTTTAGTAGAAATAATATTGTGCGCCTGATTCTGTGTAGCATAACTAGTTATAAAGGATTTGAGTCAATAATATATTGCAGA
AACACTAGTAGAAGACTTTTAGCTGACCATATTTTTCAAGGGATATGCAACAGTGCTATGATTTAAACTGGTTCTAACAATTGTGGACTTGTGATTCACGATGCAAGTTGAGTCACTGTTTTGGGTCGTAGGGGTCCCCCACCCCACCCAAAAGGGCAACAGCATGGTACTAAAAGCACTCGAGACACTGAAATGCCC
Intron 2 GTTAGTGCAA ... TTTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.55 | 619.3 | 92.8 | 108.8 |
| A2 | 14.49 | 503 | 90.3 | 51.3 |
| A3 | 17.34 | 498 | 109.5 | 61.3 |
| A4 | 16.33 | 351 | 70 | 57.5 |
| A5 | 9.88 | 138 | 16 | 20.8 |
| A6 | 13.54 | 877 | 144 | 119.5 |
| A7 | 16.12 | 2344 | 478.8 | 251 |
| A8 | 12.36 | 2862 | 425.5 | 367.8 |
| A9 | 14.54 | 2014.3 | 364.3 | 222 |
| A10 | 15.5 | 1750.3 | 344.8 | 152.3 |
>TRINITY_DN119357_c0_g1_i2 from sample A2 / Example spliced isoformCACCCGGGGAGCTTCCCTCCTTCCAAGTTCCCACCACTATATCTGAAATCGTGGAACGGCTGAGTACAAGACACAGACAGACAGGCAGGCGGGCAGAGAAAAAATTAAAAAGGGGCACCTAGGGTAGGGACTGGGGGTTGAAATAAATTCCGTCTCGTAAATCCCGTTAAATTGATTTTATGTAAGTTAAAGGATTAAAC
CGCTGTGAATGGCAGCTGTTTTCTGGTGCCACGGATGATATATGCTTTGACTCGTCTTTGATGGCGAGCTAAGCTAGCTTGCGGAATCATCATCATCATTCATCATACAACAACATGCTATGCTACTACATCCAACACCAACAACAACAACACCATCCTTCTGCTAACTGCCTGTTGTTATTGCTTCTTACTGGTGCTGC
TGGTCTTGGGGTTGGATTTGGATTTGGGGTTGGGGTTTGAGTTGGAGTTTGGGTTGGGTTTGTTAGTTACCGTAGAATAGAATAGAATAGAAATTGGCAGAAAATAGAATTTTGGGTAGCTGCAGCCAGCCAGCCAGCCAGGAAGCAGCAGGAGGGGGCAGGATTAGGGGACTTGTGTGTTTTATGTAATTGCATGATAT
GATGGGGATGGTGTTGTTAGTGCTAGTATTACTACAACAACAAAAACAACTACTGAGTTATTGTGGTGTGTCGATGACATTGAAGCAACCAAAAGCTAAACACCGAGTGGTAGTCATAGTAGAAGAACAAGGAGGATACCATGGTAGTTGGGTAAGGAGGATACCTAGTGTGGGAGATTGGAGGATTTTTGCGGATGGTC
TGCCCGGGTTTCGTGCTCGCGGCGTCTCGATGCATATGCTGCGTTGCCGCTTCTGTGTTTGCATCTTCATATATCTCCTCCTCCTGTTAATTCCTACGACCCATTCCTGGTTTTCTTGTTCCTGTTCTGGTTCTGGTTCTGCTGCCGTACACTGCGGGTTCGAGTCTTTCCCCCTCTCGCTTTCCCTCCGCCTGACCCTT
TTGCCTTCTTAGTCCGTCTGCGTAAGGGAAACTACTTGTTGTGCGCTCCCAGGGTCTGCTGCGGCTGCTGAGGGTTTCGCCTGCTTTTCTCTTTATTTCCTTTTCCCGAGTGCAGAGAGCGCGGCTCTTTTGTGCCCTGTCTTTAAGATCTGTTTAAGATCGAGCCTGGAATCCTCACGTCTTCCAGATCGGATGCCTGC
TAGGGTTCTGAAGATGTGTTTTAATCTAAAGATCGATGCAAGACCGGGCCGTGGGATTTGAACACTCGCGCTTTGGTTTGCCCGTGCACGGATTTTCCGATCTGTAGGGTTTCTTTTTTGTTTTCTGAAACTGCCGTCTCAGCGGTCCGGTGTTTTCAGCAGGCGGATCCTGCTTCGCCGTTTGTTTGCCGTGAAGGAAA
TCGAACTTGCTGCCCGAGTGCCATAGGTTTTTGCGTTTTCCGTTTCAGATTGAAGCAATATGGAGTCCGAGGAAGACAAAATATCTCCAGAGAACAAGAAAAGAAGATTAAAAACCCCACAGCAGGTGGAAGGTTTAGAGAGCTTTTATTCTGAACACAAGTATCCTTCAGAAGCCATGAAAGCACAGTTATCAGAAGAG
CTAGGATTAACAGAGAAGCAAGTACAGGGATGGTTCTGTCACAGGAGGCTCAAGGATAAAAGGCTTATGAAGGAAGAAGCTGGCAACAATGGAAAACAAGATCAACAGAATGGCATAATGCAAGATTCTGTTAATGCAGTCAAACAAGATTCCAGCGGTAGTGGAAAAAAAACTGATCATCAACGCCATCTGAGGTGTAA
AGAGGTTGAAAATCAACGGTTCGTGAATGCCATTGATTATCCTGCAGCTGTCCTTGCATCAGAGCTTAGGGACCACGATTTGTTCAAAGTAAACCATGATAATATGGAAGACACCTTTGCAGGAAGTAGTTCAGCTTCACAAGAGAGATCATCATTGCAGAGTGGGAATCCCTATGAAACTGAGGCAAGGAGACGCCCAT
TTCAAAATGGTAAGCATTATGAATTCGAAGGAAAGAGGAAGAACAGAAGCTCGTATATGGATCCATACTCAGAAGAGAATGGTGAACATGAGGCTATTACTGCTGTTAGGGAGCAGCTAGGTGATGAATATCGAGAAGATGGCCCGCCACTGGGTGTTGAATTTCATCCTCTCCCCCCTGGTGCATTTGATGACTCAACA
GAGCCCCACTACCAGGGTAATATTGTTGTCCAGGATCACCAGAGAATGCCAAAGAAGATGATGGAACAAGATGCTCGCAAAATGTTTCGTCCAGAAGCCTTCCATACTACCTGTTCTTCAGGAGTAGGATCAGGCTACTTGTCTATTCCTGGGGGTCTCAAGTTTGAACGGGCATCTCCTAAGTTTGAACGAGCCTCGCC
AAAATATGAATGGGCCCCTTATTCTAAGCACGAGTCCTTAAATAGCAAATCCACATGGAGGCCTGCAAACAATCATCTACAAATAAGTGATAATTATCATGTGCCTGATCTGAATTCTTCAATGCAGTTGGATGAAGATTCTCCTGATGAATCCCCATCATCTGGATTTGTCACAAAAAGCTATCCAGCTTGGCACAAGC
AAGAAGCTGCAGGAAGAATGAGTTCTGATGCTCATTTGCCACTTCCATATGGAAGTAAGAATGGGACTATCCCTGGAAAAGTTCTAAATGCAGGCAAAGAATTCTCCATCTCCCGTCCTTATAATGCTGGGGATGTATATCATGATGCGTCTGGAGTAAATCCAAATGTGAAAGCTGCAGTGCCTCTTGTGCAAAATCGT
GATATGCTGTCATCTCAAGGAGAAGATAAATCCCAGCCAAAAAAAATGACAAAGAGGGAAAGGCTTAGAGAGGAAAGAAAAATTAAAAAAGAGCAGGATAGTGCACTGAGATTGAAGCAGAAATTAATTCCGAAGGAGGAAAAGATGAATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAATAGGAAGCCGAGAGA
GGTTGCCAAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGGGCATATTGTAGAAATTCCAAGCAATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGACGTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAATCCTCCACTGTTTC
TATTATCTCTTCAGGGAACAGGTTGACAATTTCCAAAAGCTGAAATAATAATTGAAGAGAGCGTATGGTGTATATAATTCTATTCATCATCTTTTGGTCAGTGACAAAATCGAACTTTAAGATCCGGATGGTTCAAAGTTTTGTATATGAAATTTCCAAGTCGACAAGTTTTCTGTAACATTTCAACTGTCAGATACATA
TTGCTCCTGCCAGTTGTTTGCGGAGCAATTACTTAAAAATGTTGTTCTGTAATATCTCTCAATCAACCATTGATTCAAGGAGATTTTCTAAATGCCGTGTTTTGTACACTGCTTGTGGTTCCGACTCTTCACTGTAGAGGCTTAGTGAAGCAAATCATTGATGCTATTAAGAGAGCCTAGTTTAAAAGATGGCATCTCCC
AAGTAATGCAGATCACACATTTAAACTAACAGAGGTCTTAATAATTCAGATGAATGCATAATAAAAAAGGACAAAGTTATCTGGAAATCATTCGCACTCGAGCACTAGAATAAATTTTTATTCTTGCTCTAAAATTCATGGGGTAGTCAGACATATATATTTGAAGAAATCATTCAGGTATTTTTTTCACAACATATTGT
GAATGCGAAACTTTCAAATTGTTTTGTACTCGAGTGAAGGAGGTGTTTAGTAGAAATAATATTGTGCGCCTGATTCTGTGTAGCCTAACTAGTTATAAAGGATTTGAGTCAATAATATATTGCAGAAACACTAGTAGAAGACTTTTAGCTGACCATATTTTTCAAGGGATATGCAACAGTGC
>TRINITY_DN119357_c0_g1_i4 from sample A2 / Example unspliced isoform:AATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAATAGGAAGCCGAGAGAGGTTGCCAAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGGgttagtgcaattgaatgatattggagttgtttaaatttgtagcgaactccagttttattcaaagtccttttttggaatttacatgaa
gacaaaatacaagatcgttttaatgtgcatggttttgggataacttcatttaattttctgtttatatatttcataccatcttgaagttatacaaagctatggatcaatatgtccattatttgtagagggcattttcttttgtttgctgatattcacggatggaatttgttttcttgcagGCATATTGTAGAAATTCCAAG
CAATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGACGTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAATCCTCCACTGTTTCTATTATCTCTTTAGGGAATCAGGTTGACAATTTCCAAAAGCTGAAATAATAATTGAAGAGAGCGTATGGTGTATATAATTC
TATTCATCATCTTTTGGTCAGTGACAAAATCACTTTACAAAATCGAACTTTAAGATCCGGATGGTTCAAAGTTTTGTATATGAAATTTCCAAGTCTACAAGTCTTCTGTAACATTTCAACTGTCAGATACATATTGCTCCTGCCAGTTGTTTGCGGAGCAATTACTTAAAAATGTTGTTCTGTAATATCTCTCAATCAAC
CATTGATTCAAGGAGATTTTCTAAATGCCGTGTTTTGTACACTGCTTGTGGTTCCGACTCTTCACTGTAGAGGCTTAGTGAAGCAAATCATTGATGCTATTAAGAGAGCCTAGTTTAAAAGATGGCATCTCCCAAGTAATGCAGATCACACATTTAAACTAACAGAGGTCTTAATAATTCAGATGAATGCATAATAAAAA
AGGACAAAGTTATCTGGAAATCATTCGCACTCGAGCACTAGAATAAATTTTTATTCTTGCTCTAAAATTCATGGGGTAGTCAGACATATATATTTGAAGAAATCATTCAGGTATTTTTTTCACAACATATTGTGAATGCGAAACTTTCAAATTGTTTTGTACTCGAGTGAAGGAGGTGTTTAGTAGAAATAATATTGTGC
GCCTGATTCTGTGTAGCCTAACTAGTTATAAAGGATTTGAGTCAATAATATATTGCAGAAACACTAGTAGAAGACTTTTAGCTGACCATATTTTTCAAGGGATATGCAACAGTGC
Intron 3 GTAAGTATAC ... CAACTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.49 | 325.9 | 36 | 124.3 |
| A2 | 22.23 | 349.6 | 30 | 101 |
| A3 | 28.55 | 324.6 | 27.4 | 130.8 |
| A4 | 29.33 | 158.2 | 16.1 | 65.8 |
| A5 | 19.35 | 89.3 | 9.2 | 21.5 |
| A6 | 22.78 | 522.2 | 58.7 | 155.2 |
| A7 | 26.44 | 1575.8 | 101.8 | 570.7 |
| A8 | 23.09 | 1673 | 108.3 | 506.5 |
| A9 | 24.49 | 1394 | 81.3 | 455.9 |
| A10 | 27.11 | 1169.1 | 56.5 | 438.8 |
>TRINITY_DN135265_c1_g3_i2 from sample A1 / Example spliced isoformCCACCCGGGGAGCTTCCCTCCTTCCAAGTTCCCACCACTATATCTGAAATCGTGGAACGGCTGAGTACAAGACACAGACAGACAGGCAGGCGGGCAGAGAAAAAATTAAAAAGGGGCACCTAGGGTAGGGACTGGGGGTTGAAATAAATTCCGTCTCGTAAATCCCGTTAAATTGATTTTATGTAAGTTAAAGGATTAAA
CCGCTGTGAATGGCAGCTGTTTTCTGGTGCCACGGATGATATATGCTTTGACTCGTCTTTGATGGCGAGCTAAGCTAGCTTGCGGAATCATCATCATCATTCATCATACAACAACATGCTATGCTACTACATCCAACACCAACAACAACAACACCATCCTTCTGCTAACTGCCTGTTGTTATTGCTTCTTACTGGTGCTG
CTGGTCTTGGGGTTGGATTTGGATTTGGGGTTGGGGTTTGAGTTGGAGTTTGGGTTGGGTTTGTTAGTTACCGTAGAATAGAATAGAATAGAAATTGGCAGAAAATAGAATTTTGGGTAGCTGCAGCCAGCCAGCCAGCCAGGAAGCAGCAGGAGGGGGCAGGATTAGGGGACTTGTGTGTTTTATGTAATTGCATGATA
TGATGGGGATGGTGTTGTTAGTGCTAGTATTACTACAACAACAAAAACAACTACTGAGTTATTGTGGTGTGTCGATGACATTGAAGCAACCAAAAGCTAAACACCGAGTGGTAGTCATAGTAGAAGAACAAGGAGGATACCATGGTAGTTGGGTAAGGAGGATACCTAGTGTGGGAGATTGGAGGATTTTTGCGGATGGT
CTGCCCGGGTTTCGTGCTCGCGGCGTCTCGATGCATATGCTGCGTTGCCGCTTCTGTGTTTGCATCTTCATATATCTCCTCCTCCTGTTAATTCCTACGACCCATTCCTGGTTTTCTTGTTCCTGTTCTGGTTCTGGTTCTGCTGCCGTACACTGCGGGTTCGAGTCTTTCCCCCTCTCGCTTTCCCTCCGCCTGACCCT
TTTGCCTTCTTAGTCCGTCTGCGTAAGGGAAACTACTTGTTGTGCGCTCCCAGGGTCTGCTGCGGCTGCTGAGGGTTTCGCCTGCTTTTCTTTTTATTTCCTTTTCCCGAGTGCAGAGAGCGCGGCTCTTTTGTGCCCTGTCTTTAAGATCTGTTTAAGATCGAGCCTGGAATCCTCACGTCTTCCAGATCGGGTGCCTG
CTAGGGTTCTGAAGATGTGTTTTAATCTAAAGATCGATGCAAGACCGGGCCGTGGGATTTGAACACTCGCGCTTTGGTTTGTCCGTGCACGGATTTTCCGATCTGTAGGGTTTCTTTTTTGTTTTCTGAAACTGCCGTCTCAGCGGTCCGGTGTATTCAGCAGGCGGATCCTGCTTCGCCGTTTGTTTGCCGTGAAGGAA
ATCGAACTTGCTGCCCGAGTGCCATAGGTTTTTGCGTTTTCCGTTTCAGATTGAAGCAATATGGAGTCCGAGGAAGACAAAATATCTCCAGAGAACAAGAAAAGAAGATTAAAAACCCCACAGCAGGTGGAAGGTTTAGAGAGCTTTTATTCTGAACACAAGTATCCTTCAGAAGCCATGAAAGCACAGTTATCAGAAGA
GCTAGGATTAACAGAGAAGCAAGTACAGGGATGGTTCTGTCACAGGAGGCTCAAGGATAAAAGGCTCATGAAGGAAGAAGCTGGCAACAATGGAAAACAAGATCAACAGAATGGCATAATGCAAGATTCTGTTAATGCAGTCAAACAAGATTCCAGCGGTAGTGGAAAAAAAACTGATCATCAACGCCATCTGAGGTGTA
AAGAGGTTGAAAATCAACGGTTTGTGAATGCCATTGATTATCCTGCAGCTGTCCTTGCATCAGAGCTTAGGGACCACGATTTGTTCAAAGTAAACCATGATAATATGGAAGACACCTTTGCAGGAAGTAGTTCAGCTTCACAAGAGAGATCATCATTGCAGAGTGGGAATCCCTATGAAACTGAGGCAAGGAGACGCCCA
TTTCAAAATGGTAAGCATTATGAATTTGAAGGAAAGAGGAAGAACAGAAGCTCGTATATGGATCCATACTCAGAAGAGAATGGTGAACATGAGGCTATTACTGCTGTTAGGGAGCAGCTAGGTGATGAATATCGAGAAGATGGCCCGCCACTGGGTGTTGAATTTCATCCTCTCCCCCCTGGTGCATTTGATGACTCAAC
AGAGCCCCACTACCAGGGTAATATTGTTGTCCAGGATCACCAGAGAATGCCAAAGAAGATGATGGAACAAGATGCTCGCAAAATGTTTCGTCCAGAAGCCTTCCATACTACCTGTTCTTCAGGAGTAGGATCAGGCTACTTGTCTATTCCTGGGGGTCTCAAGTTTGAACGGGCATCTCCTAAGTTTGAACGAGCCTCGC
CAAAATATGAATGGGCCCCTTATTCTAAGCACGAGTCCTTAAATAGCAAATCCACATGGAGGCCTGCAAACAATCATCTACAAATAAGTGATAATTATCATGTGCCTGATCTGAATTCTTCAATGCAGTTGGATGAAGATTCTCCTGATGAATCCCCATCATCTGGATTTGTCACAAAAAGCTATCCAGCTTGGCACAAG
CAAGAAGCTGCAGGAAGAATGAGTTCTGATGCTCATTTGCCACTTCCATATGGAAGTAAGAATGGGACTATCCCTGGAAAAGTTCTAAATGCAGGCAAAGAATTCTCCATCTCCCGTCCTTATAATGCTGGGGATGTATATCATGATGCATCTGGAGTAAATCCAAATGTGAAAGCTGCAGTGCCTCTTGTGCAAAATCG
TGATATGCTGTCATCTCAAGGAGAAGATAAATCCCAGCCAAAAAAAATGACAAAGAGGGAAAGGCTTAGAGAGGAAAGAAAAATTAAAAAAGAGCAGGATAGTGCACTGAGATTGAAGCAGAAATTAATTCCGAAGGAGGAAAAGATGAATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAATAGGAAGCCGAGAG
AGGTTGCCAAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGGGCATATTGGAGAAATTCCAAGCAATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGACGTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAATCCTCCACTGTTT
CTATTATCTCTTCAGGGAACAGGTTGACAATTTCCAAAAGCTGAAATAATAATTGAAGAGAGCGTATGGTGTATATAATTCTATTCATCATCTTTTGGTCAGTGACAAAATCGAACTTTAAGATCCGGATGGTTCAAAGTTTTGTATATGAAATTTCCAAGTCGACAAGTTTTCTGTAACATTTCAACTGTCAGATACAT
ATTGCTCCTGCCAGTTGTTTGCGGAGCAATTACTTAAAAATGTTGTTCTGTAATATCTCTCAATCAACCATTGATTCAAGGAGATTTTCTAAATGCCGTGTTTTGTACACTGCTTGTGGTTCCGACTCTTCACTGTAGAGGCTTAGTGAAGCAAATCATTGATGCTATTAAGAGAGCCTAGTTTAAAAGATGGCATCTCC
CAAGTAATGCAGATCACACATTTAAACTAACAGAGGTCTTAATAATTCAGATGAATGCATAATAAAAAAGGACAAAGTTATCTGGAAATCATTCGCACTCGAGCACTAGAATAAATTTTTATTCTTGCTCTAAAATTCATGGGGTAGTCAGACATATATTTGAAGAAATCATTCAGGTATTTTTTTCACAACATATTGTG
AATGCGAAACTTTCAAATTGTTTTGTACTCAAGTGAAGGAGGTGTTTAGTAGAAATAATATTGTGCGCCTGATTCTGTGTAGCATAACTAGTTATAAAGGATTTGAGTCAATAATATATTGCAGAAACACTAGTAGAAGACTTTTAGCTGACCATATTTTTCAAGGGATATGCAACAGTGCTATGATTTAAACTGGTTCT
AACAATTGTGGACTTGTGATTCACGATGCAAGTTGAGTCACTGTTTTGGGTCGTAGGGGTCCCCCACCCCACCCAAAAGGGCAACAGCATGGTACTAAAAGCACTCGAGACACTGAAATGCCTTGAACAGAGTTTGAGTTGCTTTTTAATTGTTTCTGAACATACGTTCAATGCCTCTAGGCCATTCTCCGACGCTTAGG
ATAAAAGACAACCAAAATGCTCCACTTTTTCGGTGATTTTGGGATAAAAACCGA
>TRINITY_DN135265_c1_g3_i6 from sample A1 / Example unspliced isoform:CCACCCGGGGAGCTTCCCTCCTTCCAAGTTCCCACCACTATATCTGAAATCGTGGAACGGCTGAGTACAAGACACAGACAGACAGGCAGGCGGGCAGAGAAAAAATTAAAAAGGGGCACCTAGGGTAGGGACTGGGGGTTGAAATAAATTCCGTCTCGTAAATCCCGTTAAATTGATTTTATGTAAGTTAAAGGATTAAA
CCGCTGTGAATGGCAGCTGTTTTCTGGTGCCACGGATGATATATGCTTTGACTCGTCTTTGATGGCGAGCTAAGCTAGCTTGCGGAATCATCATCATCATTCATCATACAACAACATGCTATGCTACTACATCCAACACCAACAACAACAACACCATCCTTCTGCTAACTGCCTGTTGTTATTGCTTCTTACTGGTGCTG
CTGGTCTTGGGGTTGGATTTGGATTTGGGGTTGGGGTTTGAGTTGGAGTTTGGGTTGGGTTTGTTAGTTACCGTAGAATAGAATAGAATAGAAATTGGCAGAAAATAGAATTTTGGGTAGCTGCAGCCAGCCAGCCAGCCAGGAAGCAGCAGGAGGGGGCAGGATTAGGGGACTTGTGTGTTTTATGTAATTGCATGATA
TGATGGGGATGGTGTTGTTAGTGCTAGTATTACTACAACAACAAAAACAACTACTGAGTTATTGTGGTGTGTCGATGACATTGAAGCAACCAAAAGCTAAACACCGAGTGGTAGTCATAGTAGAAGAACAAGGAGGATACCATGGTAGTTGGGTAAGGAGGATACCTAGTGTGGGAGATTGGAGGATTTTTGCGGATGGT
CTGCCCGGGTTTCGTGCTCGCGGCGTCTCGATGCATATGCTGCGTTGCCGCTTCTGTGTTTGCATCTTCATATATCTCCTCCTCCTGTTAATTCCTACGACCCATTCCTGGTTTTCTTGTTCCTGTTCTGGTTCTGGTTCTGCTGCCGTACACTGCGGGTTCGAGTCTTTCCCCCTCTCGCTTTCCCTCCGCCTGACCCT
TTTGCCTTCTTAGTCCGTCTGCGTAAGGGAAACTACTTGTTGTGCGCTCCCAGGGTCTGCTGCGGCTGCTGAGGGTTTCGCCTGCTTTTCTTTTTATTTCCTTTTCCCGAGTGCAGAGAGCGCGGCTCTTTTGTGCCCTGTCTTTAAGATCTGTTTAAGATCGAGCCTGGAATCCTCACGTCTTCCAGATCGGGTGCCTG
CTAGGGTTCTGAAGATGTGTTTTAATCTAAAGATCGATGCAAGACCGGGCCGTGGGATTTGAACACTCGCGCTTTGGTTTGTCCGTGCACGGATTTTCCGATCTGTAGGGTTTCTTTTTTGTTTTCTGAAACTGCCGTCTCAGCGGTCCGGTGTATTCAGCAGGCGGATCCTGCTTCGCCGTTTGTTTGCCGTGAAGGAA
ATCGAACTTGCTGCCCGAGTGCCATAGGTTTTTGCGTTTTCCGTTTCAGATTGAAGCAATATGGAGTCCGAGGAAGACAAAATATCTCCAGAGAACAAGAAAAGAAGATTAAAAACCCCACAGCAGGTGGAAGGTTTAGAGAGCTTTTATTCTGAACACAAGTATCCTTCAGAAGCCATGAAAGCACAGTTATCAGAAGA
GCTAGGATTAACAGAGAAGCAAGTACAGGGATGGTTCTGTCACAGGAGGCTCAAGGATAAAAGGCTCATGAAGGAAGAAGCTGGCAACAATGGAAAACAAGATCAACAGAATGGCATAATGCAAGATTCTGTTAATGCAGTCAAACAAGATTCCAGCGGTAGTGGAAAAAAAACTGATCATCAACGCCATCTGAGGTGTA
AAGAGGTTGAAAATCAACGGTTTGTGAATGCCATTGATTATCCTGCAGCTGTCCTTGCATCAGAGCTTAGGGACCACGATTTGTTCAAAGTAAACCATGATAATATGGAAGACACCTTTGCAGGAAGTAGTTCAGCTTCACAAGAGAGATCATCATTGCAGAGTGGGAATCCCTATGAAACTGAGGCAAGGAGACGCCCA
TTTCAAAATGGTAAGCATTATGAATTTGAAGGAAAGAGGAAGAACAGAAGCTCGTATATGGATCCATACTCAGAAGAGAATGGTGAACATGAGGCTATTACTGCTGTTAGGGAGCAGCTAGGTGATGAATATCGAGAAGATGGCCCGCCACTGGGTGTTGAATTTCATCCTCTCCCCCCTGGTGCATTTGATGACTCAAC
AGAGCCCCACTACCAGGGTAATATTGTTGTCCAGGATCACCAGAGAATGCCAAAGAAGATGATGGAACAAGATGCTCGCAAAATGTTTCGTCCAGAAGCCTTCCATACTACCTGTTCTTCAGGAGTAGGATCAGGCTACTTGTCTATTCCTGGGGGTCTCAAGTTTGAACGGGCATCTCCTAAGTTTGAACGAGCCTCGC
CAAAATATGAATGGGCCCCTTATTCTAAGCACGAGTCCTTAAATAGCAAATCCACATGGAGGCCTGCAAACAATCATCTACAAATAAGTGATAATTATCATGTGCCTGATCTGAATTCTTCAATGCAGTTGGATGAAGATTCTCCTGATGAATCCCCATCATCTGGATTTGTCACAAAAAGCTATCCAGCTTGGCACAAG
CAAGAAGCTGCAGGAAGAATGAGTTCTGATGCTCATTTGCCACTTCCATATGGAAGTAAGAATGGGACTATCCCTGGAAAAGTTCTAAATGCAGGCAAAGAATTCTCCATCTCCCGTCCTTATAATGCTGGGGATGTATATCATGATGCATCTGGAGTAAATCCAAATGTGAAAGCTGCAGTGCCTCTTGTGCAAAATCG
TGATATGCTGTCATCTCAAGGAGAAGATAAATCCCAGCCAAAAAAAATGACAAAGAGGGAAAGGCTTAGAGAGGAAAGAAAAATTAAAAAAGAGCAGGATAGTGCACTGAGATTGAAGCAGAAATTAATTCCGAAGGAGGAAAAGATGgtaagtatacttgagatggcagtttactgttcagaaatttgcagcttgtata
tttgagctaggttgagaagagcttaatgttcgcgtgcattagatgtactgtagattgactattttataaatgatttccaacttacagAATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAATAGGAAGCCGAGAGAGGTTGCCAAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGG
GCATATTGGAGAAATTCCAAGCAATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGACGTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAATCCTCCACTGTTTCTATTATCTCTT
Intron 4 GTAATGGTCT ... TATTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.34 | 314.6 | 0 | 66 |
| A2 | 18.34 | 253.8 | 0 | 57 |
| A3 | 17.91 | 243 | 0 | 53 |
| A4 | 20.83 | 205.2 | 1 | 54 |
| A5 | 15.63 | 108 | 0 | 20 |
| A6 | 24.94 | 57.2 | 0 | 19 |
| A7 | 21.19 | 383 | 0 | 103 |
| A8 | 22.01 | 177.2 | 0 | 50 |
| A9 | 21.02 | 379.4 | 0 | 101 |
| A10 | 20.98 | 474.6 | 0 | 126 |
>TRINITY_DN135265_c1_g3_i6 from sample A1 / Example spliced isoformCCACCCGGGGAGCTTCCCTCCTTCCAAGTTCCCACCACTATATCTGAAATCGTGGAACGGCTGAGTACAAGACACAGACAGACAGGCAGGCGGGCAGAGAAAAAATTAAAAAGGGGCACCTAGGGTAGGGACTGGGGGTTGAAATAAATTCCGTCTCGTAAATCCCGTTAAATTGATTTTATGTAAGTTAAAGGATTAAA
CCGCTGTGAATGGCAGCTGTTTTCTGGTGCCACGGATGATATATGCTTTGACTCGTCTTTGATGGCGAGCTAAGCTAGCTTGCGGAATCATCATCATCATTCATCATACAACAACATGCTATGCTACTACATCCAACACCAACAACAACAACACCATCCTTCTGCTAACTGCCTGTTGTTATTGCTTCTTACTGGTGCTG
CTGGTCTTGGGGTTGGATTTGGATTTGGGGTTGGGGTTTGAGTTGGAGTTTGGGTTGGGTTTGTTAGTTACCGTAGAATAGAATAGAATAGAAATTGGCAGAAAATAGAATTTTGGGTAGCTGCAGCCAGCCAGCCAGCCAGGAAGCAGCAGGAGGGGGCAGGATTAGGGGACTTGTGTGTTTTATGTAATTGCATGATA
TGATGGGGATGGTGTTGTTAGTGCTAGTATTACTACAACAACAAAAACAACTACTGAGTTATTGTGGTGTGTCGATGACATTGAAGCAACCAAAAGCTAAACACCGAGTGGTAGTCATAGTAGAAGAACAAGGAGGATACCATGGTAGTTGGGTAAGGAGGATACCTAGTGTGGGAGATTGGAGGATTTTTGCGGATGGT
CTGCCCGGGTTTCGTGCTCGCGGCGTCTCGATGCATATGCTGCGTTGCCGCTTCTGTGTTTGCATCTTCATATATCTCCTCCTCCTGTTAATTCCTACGACCCATTCCTGGTTTTCTTGTTCCTGTTCTGGTTCTGGTTCTGCTGCCGTACACTGCGGGTTCGAGTCTTTCCCCCTCTCGCTTTCCCTCCGCCTGACCCT
TTTGCCTTCTTAGTCCGTCTGCGTAAGGGAAACTACTTGTTGTGCGCTCCCAGGGTCTGCTGCGGCTGCTGAGGGTTTCGCCTGCTTTTCTTTTTATTTCCTTTTCCCGAGTGCAGAGAGCGCGGCTCTTTTGTGCCCTGTCTTTAAGATCTGTTTAAGATCGAGCCTGGAATCCTCACGTCTTCCAGATCGGGTGCCTG
CTAGGGTTCTGAAGATGTGTTTTAATCTAAAGATCGATGCAAGACCGGGCCGTGGGATTTGAACACTCGCGCTTTGGTTTGTCCGTGCACGGATTTTCCGATCTGTAGGGTTTCTTTTTTGTTTTCTGAAACTGCCGTCTCAGCGGTCCGGTGTATTCAGCAGGCGGATCCTGCTTCGCCGTTTGTTTGCCGTGAAGGAA
ATCGAACTTGCTGCCCGAGTGCCATAGGTTTTTGCGTTTTCCGTTTCAGATTGAAGCAATATGGAGTCCGAGGAAGACAAAATATCTCCAGAGAACAAGAAAAGAAGATTAAAAACCCCACAGCAGGTGGAAGGTTTAGAGAGCTTTTATTCTGAACACAAGTATCCTTCAGAAGCCATGAAAGCACAGTTATCAGAAGA
GCTAGGATTAACAGAGAAGCAAGTACAGGGATGGTTCTGTCACAGGAGGCTCAAGGATAAAAGGCTCATGAAGGAAGAAGCTGGCAACAATGGAAAACAAGATCAACAGAATGGCATAATGCAAGATTCTGTTAATGCAGTCAAACAAGATTCCAGCGGTAGTGGAAAAAAAACTGATCATCAACGCCATCTGAGGTGTA
AAGAGGTTGAAAATCAACGGTTTGTGAATGCCATTGATTATCCTGCAGCTGTCCTTGCATCAGAGCTTAGGGACCACGATTTGTTCAAAGTAAACCATGATAATATGGAAGACACCTTTGCAGGAAGTAGTTCAGCTTCACAAGAGAGATCATCATTGCAGAGTGGGAATCCCTATGAAACTGAGGCAAGGAGACGCCCA
TTTCAAAATGGTAAGCATTATGAATTTGAAGGAAAGAGGAAGAACAGAAGCTCGTATATGGATCCATACTCAGAAGAGAATGGTGAACATGAGGCTATTACTGCTGTTAGGGAGCAGCTAGGTGATGAATATCGAGAAGATGGCCCGCCACTGGGTGTTGAATTTCATCCTCTCCCCCCTGGTGCATTTGATGACTCAAC
AGAGCCCCACTACCAGGGTAATATTGTTGTCCAGGATCACCAGAGAATGCCAAAGAAGATGATGGAACAAGATGCTCGCAAAATGTTTCGTCCAGAAGCCTTCCATACTACCTGTTCTTCAGGAGTAGGATCAGGCTACTTGTCTATTCCTGGGGGTCTCAAGTTTGAACGGGCATCTCCTAAGTTTGAACGAGCCTCGC
CAAAATATGAATGGGCCCCTTATTCTAAGCACGAGTCCTTAAATAGCAAATCCACATGGAGGCCTGCAAACAATCATCTACAAATAAGTGATAATTATCATGTGCCTGATCTGAATTCTTCAATGCAGTTGGATGAAGATTCTCCTGATGAATCCCCATCATCTGGATTTGTCACAAAAAGCTATCCAGCTTGGCACAAG
CAAGAAGCTGCAGGAAGAATGAGTTCTGATGCTCATTTGCCACTTCCATATGGAAGTAAGAATGGGACTATCCCTGGAAAAGTTCTAAATGCAGGCAAAGAATTCTCCATCTCCCGTCCTTATAATGCTGGGGATGTATATCATGATGCATCTGGAGTAAATCCAAATGTGAAAGCTGCAGTGCCTCTTGTGCAAAATCG
TGATATGCTGTCATCTCAAGGAGAAGATAAATCCCAGCCAAAAAAAATGACAAAGAGGGAAAGGCTTAGAGAGGAAAGAAAAATTAAAAAAGAGCAGGATAGTGCACTGAGATTGAAGCAGAAATTAATTCCGAAGGAGGAAAAGATGGTAAGTATACTTGAGATGGCAGTTTACTGTTCAGAAATTTGCAGCTTGTATA
TTTGAGCTAGGTTGAGAAGAGCTTAATGTTCGCGTGCATTAGATGTACTGTAGATTGACTATTTTATAAATGATTTCCAACTTACAGAATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAATAGGAAGCCGAGAGAGGTTGCCAAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGG
GCATATTGGAGAAATTCCAAGCAATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGACGTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAATCCTCCACTGTTTCTATTATCTCTT
>TRINITY_DN135265_c1_g3_i3 from sample A1 / Example unspliced isoform:AGGTTTAGAGAGCTTTTATTCTGgtaatggtctttcagattttgagctcaagtcctgtagctgtatttttttaatcttctgagcattattgttcgaaaattttgaaactctagcagattgtgagttttgtatttacacgagtgttgatttattctgcaaaatatctattctgcagAACACAAGTATCCTTCAGAAGCCAT
GAAAGCACAGTTATCAGAAGAGCTAGGATTAACAGAGAAGCAAGTACAGGGATGGTTCTGTCACAGGAGGCTCAAGGATAAAAGGCTCATGAAGGAAGAAGCTGGCAACAATGGAAAACAAGATCAACAGAATGGCATAATGCAAGATTCTGTTAATGCAGTCAAACAAGATTCCAGCGGTAGTGGAAAAAAAACTGATC
ATCAACGCCATCTGAGGTGTAAAGAGGTTGAAAATCAACGGTTTGTGAATGCCATTGATTATCCTGCAGCTGTCCTTGCATCAGAGCTTAGGGACCACGATTTGTTCAAAGTAAACCATGATAATATGGAAGACACCTTTGCAGGAAGTAGTTCAGCTTCACAAGAGAGATCATCATTGCAGAGTGGGAATCCCTATGAA
ACTGAGGCAAGGAGACGCCCATTTCAAAATGGTAAGCATTATGAATTTGAAGGAAAGAGGAAGAACAGAAGCTCGTATATGGATCCATACTCAGAAGAGAATGGTGAACATGAGGCTATTACTGCTGTTAGGGAGCAGCTAGGTGATGAATATCGAGAAGATGGCCCGCCACTGGGTGTTGAATTTCATCCTCTCCCCCC
TGGTGCATTTGATGACTCAACAG
Intron 5 GTAATTCTTT ... TCTTCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.47 | 266 | 61 | 29 |
| A2 | 12.32 | 178 | 39 | 11 |
| A3 | 13.04 | 290 | 59 | 28 |
| A4 | 17.77 | 155 | 41 | 26 |
| A5 | 12.18 | 119 | 23 | 10 |
| A6 | 14.2 | 148 | 27 | 22 |
| A7 | 12.85 | 536 | 121 | 37 |
| A8 | 13.39 | 427 | 93 | 39 |
| A9 | 12.09 | 538 | 103 | 45 |
| A10 | 11.53 | 522 | 99 | 37 |
>TRINITY_DN135265_c1_g3_i6 from sample A1 / Example spliced isoformCCACCCGGGGAGCTTCCCTCCTTCCAAGTTCCCACCACTATATCTGAAATCGTGGAACGGCTGAGTACAAGACACAGACAGACAGGCAGGCGGGCAGAGAAAAAATTAAAAAGGGGCACCTAGGGTAGGGACTGGGGGTTGAAATAAATTCCGTCTCGTAAATCCCGTTAAATTGATTTTATGTAAGTTAAAGGATTAAA
CCGCTGTGAATGGCAGCTGTTTTCTGGTGCCACGGATGATATATGCTTTGACTCGTCTTTGATGGCGAGCTAAGCTAGCTTGCGGAATCATCATCATCATTCATCATACAACAACATGCTATGCTACTACATCCAACACCAACAACAACAACACCATCCTTCTGCTAACTGCCTGTTGTTATTGCTTCTTACTGGTGCTG
CTGGTCTTGGGGTTGGATTTGGATTTGGGGTTGGGGTTTGAGTTGGAGTTTGGGTTGGGTTTGTTAGTTACCGTAGAATAGAATAGAATAGAAATTGGCAGAAAATAGAATTTTGGGTAGCTGCAGCCAGCCAGCCAGCCAGGAAGCAGCAGGAGGGGGCAGGATTAGGGGACTTGTGTGTTTTATGTAATTGCATGATA
TGATGGGGATGGTGTTGTTAGTGCTAGTATTACTACAACAACAAAAACAACTACTGAGTTATTGTGGTGTGTCGATGACATTGAAGCAACCAAAAGCTAAACACCGAGTGGTAGTCATAGTAGAAGAACAAGGAGGATACCATGGTAGTTGGGTAAGGAGGATACCTAGTGTGGGAGATTGGAGGATTTTTGCGGATGGT
CTGCCCGGGTTTCGTGCTCGCGGCGTCTCGATGCATATGCTGCGTTGCCGCTTCTGTGTTTGCATCTTCATATATCTCCTCCTCCTGTTAATTCCTACGACCCATTCCTGGTTTTCTTGTTCCTGTTCTGGTTCTGGTTCTGCTGCCGTACACTGCGGGTTCGAGTCTTTCCCCCTCTCGCTTTCCCTCCGCCTGACCCT
TTTGCCTTCTTAGTCCGTCTGCGTAAGGGAAACTACTTGTTGTGCGCTCCCAGGGTCTGCTGCGGCTGCTGAGGGTTTCGCCTGCTTTTCTTTTTATTTCCTTTTCCCGAGTGCAGAGAGCGCGGCTCTTTTGTGCCCTGTCTTTAAGATCTGTTTAAGATCGAGCCTGGAATCCTCACGTCTTCCAGATCGGGTGCCTG
CTAGGGTTCTGAAGATGTGTTTTAATCTAAAGATCGATGCAAGACCGGGCCGTGGGATTTGAACACTCGCGCTTTGGTTTGTCCGTGCACGGATTTTCCGATCTGTAGGGTTTCTTTTTTGTTTTCTGAAACTGCCGTCTCAGCGGTCCGGTGTATTCAGCAGGCGGATCCTGCTTCGCCGTTTGTTTGCCGTGAAGGAA
ATCGAACTTGCTGCCCGAGTGCCATAGGTTTTTGCGTTTTCCGTTTCAGATTGAAGCAATATGGAGTCCGAGGAAGACAAAATATCTCCAGAGAACAAGAAAAGAAGATTAAAAACCCCACAGCAGGTGGAAGGTTTAGAGAGCTTTTATTCTGAACACAAGTATCCTTCAGAAGCCATGAAAGCACAGTTATCAGAAGA
GCTAGGATTAACAGAGAAGCAAGTACAGGGATGGTTCTGTCACAGGAGGCTCAAGGATAAAAGGCTCATGAAGGAAGAAGCTGGCAACAATGGAAAACAAGATCAACAGAATGGCATAATGCAAGATTCTGTTAATGCAGTCAAACAAGATTCCAGCGGTAGTGGAAAAAAAACTGATCATCAACGCCATCTGAGGTGTA
AAGAGGTTGAAAATCAACGGTTTGTGAATGCCATTGATTATCCTGCAGCTGTCCTTGCATCAGAGCTTAGGGACCACGATTTGTTCAAAGTAAACCATGATAATATGGAAGACACCTTTGCAGGAAGTAGTTCAGCTTCACAAGAGAGATCATCATTGCAGAGTGGGAATCCCTATGAAACTGAGGCAAGGAGACGCCCA
TTTCAAAATGGTAAGCATTATGAATTTGAAGGAAAGAGGAAGAACAGAAGCTCGTATATGGATCCATACTCAGAAGAGAATGGTGAACATGAGGCTATTACTGCTGTTAGGGAGCAGCTAGGTGATGAATATCGAGAAGATGGCCCGCCACTGGGTGTTGAATTTCATCCTCTCCCCCCTGGTGCATTTGATGACTCAAC
AGAGCCCCACTACCAGGGTAATATTGTTGTCCAGGATCACCAGAGAATGCCAAAGAAGATGATGGAACAAGATGCTCGCAAAATGTTTCGTCCAGAAGCCTTCCATACTACCTGTTCTTCAGGAGTAGGATCAGGCTACTTGTCTATTCCTGGGGGTCTCAAGTTTGAACGGGCATCTCCTAAGTTTGAACGAGCCTCGC
CAAAATATGAATGGGCCCCTTATTCTAAGCACGAGTCCTTAAATAGCAAATCCACATGGAGGCCTGCAAACAATCATCTACAAATAAGTGATAATTATCATGTGCCTGATCTGAATTCTTCAATGCAGTTGGATGAAGATTCTCCTGATGAATCCCCATCATCTGGATTTGTCACAAAAAGCTATCCAGCTTGGCACAAG
CAAGAAGCTGCAGGAAGAATGAGTTCTGATGCTCATTTGCCACTTCCATATGGAAGTAAGAATGGGACTATCCCTGGAAAAGTTCTAAATGCAGGCAAAGAATTCTCCATCTCCCGTCCTTATAATGCTGGGGATGTATATCATGATGCATCTGGAGTAAATCCAAATGTGAAAGCTGCAGTGCCTCTTGTGCAAAATCG
TGATATGCTGTCATCTCAAGGAGAAGATAAATCCCAGCCAAAAAAAATGACAAAGAGGGAAAGGCTTAGAGAGGAAAGAAAAATTAAAAAAGAGCAGGATAGTGCACTGAGATTGAAGCAGAAATTAATTCCGAAGGAGGAAAAGATGGTAAGTATACTTGAGATGGCAGTTTACTGTTCAGAAATTTGCAGCTTGTATA
TTTGAGCTAGGTTGAGAAGAGCTTAATGTTCGCGTGCATTAGATGTACTGTAGATTGACTATTTTATAAATGATTTCCAACTTACAGAATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAATAGGAAGCCGAGAGAGGTTGCCAAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGG
GCATATTGGAGAAATTCCAAGCAATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGACGTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAATCCTCCACTGTTTCTATTATCTCTT
>TRINITY_DN135265_c1_g3_i5 from sample A1 / Example unspliced isoform:CCACCCGGGGAGCTTCCCTCCTTCCAAGTTCCCACCACTATATCTGAAATCGTGGAACGGCTGAGTACAAGACACAGACAGACAGGCAGGCGGGCAGAGAAAAAATTAAAAAGGGGCACCTAGGGTAGGGACTGGGGGTTGAAATAAATTCCGTCTCGTAAATCCCGTTAAATTGATTTTATGTAAGTTAAAGGATTAAA
CCGCTGTGAATGGCAGCTGTTTTCTGGTGCCACGGATGATATATGCTTTGACTCGTCTTTGATGGCGAGCTAAGCTAGCTTGCGGAATCATCATCATCATTCATCATACAACAACATGCTATGCTACTACATCCAACACCAACAACAACAACACCATCCTTCTGCTAACTGCCTGTTGTTATTGCTTCTTACTGGTGCTG
CTGGTCTTGGGGTTGGATTTGGATTTGGGGTTGGGGTTTGAGTTGGAGTTTGGGTTGGGTTTGTTAGTTACCGTAGAATAGAATAGAATAGAAATTGGCAGAAAATAGAATTTTGGGTAGCTGCAGCCAGCCAGCCAGCCAGGAAGCAGCAGGAGGGGGCAGGATTAGGGGACTTGTGTGTTTTATGTAATTGCATGATA
TGATGGGGATGGTGTTGTTAGTGCTAGTATTACTACAACAACAAAAACAACTACTGAGTTATTGTGGTGTGTCGATGACATTGAAGCAACCAAAAGCTAAACACCGAGTGGTAGTCATAGTAGAAGAACAAGGAGGATACCATGGTAGTTGGGTAAGGAGGATACCTAGTGTGGGAGATTGGAGGATTTTTGCGGATGGT
CTGCCCGGGTTTCGTGCTCGCGGCGTCTCGATGCATATGCTGCGTTGCCGCTTCTGTGTTTGCATCTTCATATATCTCCTCCTCCTGTTAATTCCTACGACCCATTCCTGGTTTTCTTGTTCCTGTTCTGGTTCTGGTTCTGCTGCCGTACACTGCGGGTTCGAGTCTTTCCCCCTCTCGCTTTCCCTCCGCCTGACCCT
TTTGCCTTCTTAGTCCGTCTGCGTAAGGGAAACTACTTGTTGTGCGCTCCCAGGGTCTGCTGCGGCTGCTGAGGGTTTCGCCTGCTTTTCTTTTTATTTCCTTTTCCCGAGTGCAGAGAGCGCGGCTCTTTTGTGCCCTGTCTTTAAGATCTGTTTAAGATCGAGCCTGGAATCCTCACGTCTTCCAGATCGGGTGCCTG
CTAGGGTTCTGAAGATGTGTTTTAATCTAAAGATCGATGCAAGACCGGGCCGTGGGATTTGAACACTCGCGCTTTGGTTTGTCCGTGCACGGATTTTCCGATCTGTAGGGTTTCTTTTTTGTTTTCTGAAACTGCCGTCTCAGCGGTCCGGTGTATTCAGCAGGCGGATCCTGCTTCGCCGTTTGTTTGCCGTGAAGGAA
ATCGAACTTGCTGCCCGAGTGCCATAGGTTTTTGCGTTTTCCGTTTCAGATTGAAGCAATATGGAGTCCGAGGAAGACAAAATATCTCCAGAGAACAAGAAAAGAAGATTAAAAACCCCACAGCAGGTGGAAGGTTTAGAGAGCTTTTATTCTGAACACAAGTATCCTTCAGAAGCCATGAAAGCACAGTTATCAGAAGA
GCTAGGATTAACAGAGAAGCAAGTACAGGGATGGTTCTGTCACAGGAGGCTCAAGGATAAAAGGCTCATGAAGGAAGAAGCTGGCAACAATGGAAAACAAGATCAACAGAATGGCATAATGCAAGATTCTGTTAATGCAGTCAAACAAGATTCCAGCGGTAGTGGAAAAAAAACTGATCATCAACGCCATCTGAGGTGTA
AAGAGGTTGAAAATCAACGGTTTGTGAATGCCATTGATTATCCTGCAGCTGTCCTTGCATCAGAGCTTAGGGACCACGATTTGTTCAAAGTAAACCATGATAATATGGAAGACACCTTTGCAGGAAGTAGTTCAGCTTCACAAGAGAGATCATCATTGCAGAGTGGGAATCCCTATGAAACTGAGGCAAGGAGACGCCCA
TTTCAAAATGGTAAGCATTATGAATTTGAAGGAAAGAGGAAGAACAGAAGCTCGTATATGGATCCATACTCAGAAGAGAATGGTGAACATGAGGCTATTACTGCTGTTAGGGAGCAGCTAGGTGATGAATATCGAGAAGATGGCCCGCCACTGGGTGTTGAATTTCATCCTCTCCCCCCTGGTGCATTTGATGACTCAAC
AGgtaattcttttttctgactctcttttcaccccattcttctttgtggctgaaattaatattggagtgaaatgcagtgtgagtttatattatgaaattagtataattaataatctgcttggaagttttgaattgctgttatagaacagtttgcttgccactgatattttacttgatgtgtgctttcttcaacagAGCCCC
ACTACCAGGGTAATATTGTTGTCCAGGATCACCAGAGAATGCCAAAGAAGATGATGGAACAAGATGCTCGCAAAATGTTTCGTCCAGAAGCCTTCCATACTACCTGTTCTTCAGGAGTAGGATCAGGCTACTTGTCTATTCCTGGGGGTCTCAAGTTTGAACGGGCATCTCCTAAGTTTGAACGAGCCTCGCCAAAATAT
GAATGGGCCCCTTATTCTAAGCACGAGTCCTTAAATAGCAAATCCACATGGAGGCCTGCAAACAATCATCTACAAATAAGTGATAATTATCATGTGCCTGATCTGAATTCTTCAATGCAGTTGGATGAAGATTCTCCTGATGAATCCCCATCATCTGGATTTGTCACAAAAAGCTATCCAGCTTGGCACAAGCAAGAAGC
TGCAGGAAGAATGAGTTCTGATGCTCATTTGCCACTTCCATATGGAAGTAAGAATGGGACTATCCCTGGAAAAGTTCTAAATGCAGGCAAAGAATTCTCCATCTCCCGTCCTTATAATGCTGGGGATGTATATCATGATGCATCTGGAGTAAATCCAAATGTGAAAGCTGCAGTGCCTCTTGTGCAAAATCGTGATATGC
TGTCATCTCAAGGAGAAGATAAATCCCAGCCAAAAAAAATGACAAAGAGGGAAAGGCTTAGAGAGGAAAGAAAAATTAAAAAAGAGCAGGATAGTGCACTGAGATTGAAGCAGAAATTAATTCCGAAGGAGGAAAAGATGAATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAATAGGAAGCCGAGAGAGGTTGCC
AAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGGGCATATTGGAGAAATTCCAAGCAATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGACGTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAATCCTCCACTGTTTCTATTATC
TCTTTAGGGAATCAGGTTGACAATTTCCAAAAGCTGAAATAATAATTGAAGAGAGCGTATGGTGTATATAATTCTATTCATCATCTTTTGGTCAGTGACAAAATCACTTTACAAAATCGAACTTTAAGATCCGGATGGTTCAAAGTTTTGTATATGAAATTTCCAAGTCTACAAGTCTTCTGTAACATTTCAACTGTCAG
Intron 6 GTATGCTTTG ... TTTATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.85 | 266.1 | 70 | 23.4 |
| A2 | 15.87 | 149.4 | 28 | 18 |
| A3 | 18.14 | 184.3 | 40.7 | 21.4 |
| A4 | 19.72 | 128.7 | 31.5 | 10.4 |
| A5 | 28.51 | 77.2 | 30.8 | 4.9 |
| A6 | 17.27 | 235.8 | 49 | 30.1 |
| A7 | 18.06 | 596 | 130.5 | 72.4 |
| A8 | 18.15 | 648.8 | 142.6 | 82.3 |
| A9 | 16.94 | 549.2 | 111.3 | 62.9 |
| A10 | 20.14 | 366.5 | 92 | 43.1 |
>TRINITY_DN117415_c1_g2_i5 from sample A3 / Example spliced isoformGGAATCCCCTTCCCCACCCGGGGAGCTTCCCTCCTTCCAAGTTCCCACCACTATATCTGAAATCGTGGAACGGCTGAGTACAAGACACAGACAGACAGGCAGGCGGGCAGAGAAAAAATTAAAAAGGGGCACCTAGGGTAGGGACTGGGGGTTGAAATAAATTCCGTCTCGTAAATCCCGTTAAATTGATTTTATGTAAG
TTAAAGGATTAAACCGCTGTGAATGGCAGCTGTTTTCTGGTGCCACGGATGATATATGCTTTGACTCGTCTTTGATGGCGAGCTAAGCTAGCTTGCGGAATCATCATCATCATTCATCATACAACAACATGCTATGCTACTACATCCAACACCAACAACAACAACACCATCCTTCTGCTAACTGCCTGTTGTTATTGCTT
CTTACTGGTGCTGCTGGTCTTGGGGTTGGATTTGGATTTGGGGTTGGGGTTTGAGTTGGAGTTTGGGTTGGGTTTGTTAGTTACCGTAGAATAGAATAGAATAGAAATTGGCAGAAAATAGAATTTTGGGTAGCTGCAGCCAGCCAGCCAGCCAGGAAGCAGCAGGAGGGGGCAGGATTAGGGGACTTGTGTGTTTTATG
TAATTGCATGATATGATGGGGATGGTGTTGTTAGTGCTAGTATTACTACAACAACAAAAACAACTACTGAGTTATTGTGGTGTGTCGATGACATTGAAGCAACCAAAAGCTAAACACCGAGTGGTAGTCATAGTAGAAGAACAAGGAGGATACCATGGTAGTTGGGTAAGGAGGATACCTAGTGTGGGAGATTGGAGGAT
TTTTGCGGATGGTCTGCCCGGGTTTCGTGCTCGCGGCGTCTCGATGCATATGCTGCGTTGCCGCTTCTGTGTTTGCATCTTCATATATCTCCTCCTCCTGTTAATTCCTACGACCCATTCCTGGTTTTCTTGTTCCTGTTCTGGTTCTGGTTCTGCTGCCGTACACTGCGGGTTCGAGTCTTTCCCCCTCTCGCTTTCCC
TCCGCCTGACCCTTTTGCCTTCTTAGTCCGTCTGCGTAAGGGAAACTACTTGTTGTGCGCTCCCAGGGTCTGCTGCGGCTGCTGAGGGTTTCGCCTGCTTTTCTTTTTATTTCCTTTTCCCGAGTGCAGAGAGCGCGGCTCTTTTGTGCCCTGTCTTTAAGATCTGTTTAAGATCGAGCCTGGAATCCTCACGTCTTCCA
GATCGGATGCCTGCTAGGGTTCTGAAGATGTGTTTTAATCTAAAGATCGATGCAAGACCGGGCCGTGGGATTTGAACACTCGCGCTTTGGTTTGCCCGTGCACGGATTTTCCGATCTGTAGGGTTTCTTTTTTGTTTTCTGAAACTGCCGTCTCAGCGGTCCGGTGTTTTCAGCAGGCGGATCCTGCTTCGCCGTTTGTT
TGCCGTGAAGGAAATCGAACTTGCTGCCCGAGTGCCATAGGTTTTTGCGTTTTCCGTTTCAGATTGAAGCAATATGGAGTCCGAGGAAGACAAAATATCTCCAGAGAACAAGAAAAGAAGATTAAAAACCCCACAGCAGGTGGAAGGTTTAGAGAGCTTTTATTCTGAACACAAGTATCCTTCAGAAGCCATGAAAGCAC
AGTTATCAGAAGAGCTAGGATTAACAGAGAAGCAAGTACAGGGATGGTTCTGTCACAGGAGGCTCAAGGATAAAAGGCTTATGAAGGAAGAAGCTGGCAACAATGGAAAACAAGATCAACAGAATGGCATAATGCAAGATTCTGTTAATGCAGTCAAACAAGATTCCAGCGGTAGTGGAAAAAAAACTGATCATCAACGC
CATCTGAGGTGTAAAGAGGTTGAAAATCAACGGTTTGTGAATGCCATTGATTATCCTGCAGCTGTCCTTGCATCAGAGCTTAGGGACCACGATTTGTTCAAAGTAAACCATGATAATATGGAAGACACCTTTGCAGGAAGTAGTTCAGCTTCACAAGAGAGATCATCATTGCAGAGTGGGAATCCCTATGAAACTGAGGC
AAGGAGACGCCCATTTCAAAATGGTAAGCATTATGAATTTGAAGGAAAGAGGAAGAACAGAAGCTCGTATATGGATCCATACTCAGAAGAGAATGGTGAACATGAGGCTATTACTGCTGTTAGGGAGCAGCTAGGTGATGAATATCGAGAAGATGGCCCGCCACTGGGTGTTGAATTTCATCCTCTACCCCCTGGTGCAT
TTGATGACTCAACAGAGCCCCACTACCAGGGTAATATTGTTGTCCAGGATCACCAGAGAATGCCAAAGAAGATGATGGAACAAGATGCTCGCAAAATGTTTCGTCCAGAAGCCTTTCATACTACCTGTTCTTCAGGAGTAGGATCAGGCTACTTGTCTATTCCTGCGGGTCTCAAGTTTGAACGGGCATCTCCTAAGTTT
GAACGAGCCTCGCCAAAATATGAATGGGCCCCTTATTCTAAGCACGAGTCCTTAAATAGCAAATCCACATGGAGGCCTGCAAACAATCATCTACAAATAAGTGATAATTATCATGTGCCTGATCTGAATTCTTCAATGCAGTTGGATGAAGATTCTCCTGATGAATCCCCATCATCTGGATTTGTCACAAAAAGCTATCC
AGCTTGGCACAAGCAAGAAGCTGCAGGAAGAATGAGTTCTGATGCTCATTTGCCACTTCCATATGGAAGTAAGAATGGGACTATCCCTGGAAAAGTTCTAAATGCAGGCAAAGAATTCTCCATCTCCCGTCCTTATAATGCTGGGGATGTATATCATGATGCGTCTGGAGTAAATCCAAATGTGAAAGCTGCAGTGCCTC
TTGTGCAAAATCGTGATATGCTGTCATCTCAAGGAGAAGATAAATCCCAGCCAAAAAAAATGACAAAGAGGGAAAGGCTTAGAGAGGAAAGAAAAATTAAAAAAGAGCAGGATAGTGCACTGAGATTGAAGCAGAAATTAATTCCGAAGGAGGAAAAGATGAATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAAT
AGGAAGCCGAGAGAGGTTGCCAAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGGGCATATTGTAGAAATTCCAAGCAATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGACGTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAA
TCCTCCACTGTTTCTATTATCTCTTCAGGGAACAGGTTGACAATTTCCAAAAGCTGAAATAATAATTGAAGAGAGCGTATGGTGTATATAATTCTATTCATCATCTTTTGGTCAGTGACAAAATCGAACTTTAAGATCCGGATGGTTCAAAGTTTTGTATATGAAATTTCCAAGTCGACAAGTTTTCTGTAACATTTCAA
CTGTCAGATACATATTGCTCCTGCTAGTTGTTTGCGGAGCAATTATTTAAAAATGTTGTTCTGTAATATCTCTCAATCAACCATTGATTCAAGGAGATTTTCTAAATGCCGTGTTTTGTACACTGCTTGTGGTTCCGACTCTTCACTGTAGAGGCT
>TRINITY_DN117415_c1_g2_i3 from sample A3 / Example unspliced isoform:GGAATCCCCTTCCCCACCCGGGGAGCTTCCCTCCTTCCAAGTTCCCACCACTATATCTGAAATCGTGGAACGGCTGAGTACAAGACACAGACAGACAGGCAGGCGGGCAGAGAAAAAATTAAAAAGGGGCACCTAGGGTAGGGACTGGGGGTTGAAATAAATTCCGTCTCGTAAATCCCGTTAAATTGATTTTATGTAAG
TTAAAGGATTAAACCGCTGTGAATGGCAGCTGTTTTCTGGTGCCACGGATGATATATGCTTTGACTCGTCTTTGATGGCGAGCTAAGCTAGCTTGCGGAATCATCATCATCATTCATCATACAACAACATGCTATGCTACTACATCCAACACCAACAACAACAACACCATCCTTCTGCTAACTGCCTGTTGTTATTGCTT
CTTACTGGTGCTGCTGGTCTTGGGGTTGGATTTGGATTTGGGGTTGGGGTTTGAGTTGGAGTTTGGGTTGGGTTTGTTAGTTACCGTAGAATAGAATAGAATAGAAATTGGCAGAAAATAGAATTTTGGGTAGCTGCAGCCAGCCAGCCAGCCAGGAAGCAGCAGGAGGGGGCAGGATTAGGGGACTTGTGTGTTTTATG
TAATTGCATGATATGATGGGGATGGTGTTGTTAGTGCTAGTATTACTACAACAACAAAAACAACTACTGAGTTATTGTGGTGTGTCGATGACATTGAAGCAACCAAAAGCTAAACACCGAGTGGTAGTCATAGTAGAAGAACAAGGAGGATACCATGGTAGTTGGGTAAGGAGGATACCTAGTGTGGGAGATTGGAGGAT
TTTTGCGGATGGTCTGCCCGGGTTTCGTGCTCGCGGCGTCTCGATGCATATGCTGCGTTGCCGCTTCTGTGTTTGCATCTTCATATATCTCCTCCTCCTGTTAATTCCTACGACCCATTCCTGGTTTTCTTGTTCCTGTTCTGGTTCTGGTTCTGCTGCCGTACACTGCGGGTTCGAGTCTTTCCCCCTCTCGCTTTCCC
TCCGCCTGACCCTTTTGCCTTCTTAGTCCGTCTGCGTAAGGGAAACTACTTGTTGTGCGCTCCCAGGGTCTGCTGCGGCTGCTGAGGGTTTCGCCTGCTTTTCTTTTTATTTCCTTTTCCCGAGTGCAGAGAGCGCGGCTCTTTTGTGCCCTGTCTTTAAGATCTGTTTAAGATCGAGCCTGGAATCCTCACGTCTTCCA
GATCGGATGCCTGCTAGGGTTCTGAAGATGTGTTTTAATCTAAAGATCGATGCAAGACCGGGCCGTGGGATTTGAACACTCGCGCTTTGGTTTGCCCGTGCACGGATTTTCCGATCTGTAGGGTTTCTTTTTTGTTTTCTGAAACTGCCGTCTCAGCGGTCCGGTGTTTTCAGCAGGCGGATCCTGCTTCGCCGTTTGTT
TGCCGTGAAGGAAATCGAACTTGCTGCCCGAGTGCCATAGGTTTTTGCGTTTTCCGTTTCAGATTGAAGCAATATGGAGTCCGAGGAAGACAAAATATCTCCAGAGAACAAGAAAAGAAGATTAAAAACCCCACAGCAGGTGGAAGGTTTAGAGAGCTTTTATTCTGAACACAAGTATCCTTCAGAAGCCATGAAAGCAC
AGTTATCAGAAGAGCTAGGATTAACAGAGAAGCAAGTACAGGGATGGTTCTGTCACAGGAGGCTCAAGGATAAAAGGCTTATGAAGGAAGAAGCTGGCAACAATGGAAAACAAGATCAACAGAATGGCATAATGCAAGATTCTGTTAATGCAGTCAAACAAGATTCCAGCGGTAGTGGAAAAAAAACTGATCATCAACGC
CATCTGAGGTGTAAAGAGGTTGAAAATCAACGGTTTGTGAATGCCATTGATTATCCTGCAGCTGTCCTTGCATCAGAGCTTAGGGACCACGATTTGTTCAAAGTAAACCATGATAATATGGAAGACACCTTTGCAGGAAGTAGTTCAGCTTCACAAGAGAGATCATCATTGCAGAGTGGGAATCCCTATGAAACTGAGGC
AAGGAGACGCCCATTTCAAAATGGTAAGCATTATGAATTTGAAGGAAAGAGGAAGAACAGAAGCTCGTATATGGATCCATACTCAGAAGAGAATGGTGAACATGAGGCTATTACTGCTGTTAGGGAGCAGCTAGGTGATGAATATCGAGAAGATGGCCCGCCACTGGGTGTTGAATTTCATCCTCTACCCCCTGGTGCAT
TTGATGACTCAACAGAGCCCCACTACCAGGGTAATATTGTTGTCCAGGATCACCAGAGAATGCCAAAGAAGATGATGGAACAAGATGCTCGCAAAATGTTTCGTCCAGAAGCCTTTCATACTACCTGTTCTTCAGGAGTAGGATCAGGCTACTTGTCTATTCCTGCGGGTCTCAAGTTTGAACGGGCATCTCCTAAGTTT
GAACGAGCCTCGCCAAAATATGAATGGGCCCCTTATTCTAAGCACGAGTCCTTAAATAGCAAATCCACATGGAGGCCTGCAAACAATCATCTACAAATAAGTGATAATTATCATGTGCCTGATCTGAATTCTTCAATGCAGTTGGATGAAGATTCTCCTGATGAATCCCCATCATCTGGATTTGTCACAAAAAGCTATCC
AGCTTGGCACAAGCAAGAAGCTGCAGGAAGAATGAGTTCTGATGCTCATTTGCCACTTCCATATGGAAGTAAGAATGGGACTATCCCTGGAAAAGTTCTAAATGCAGGCAAAGAATTCTCCATCTCCCGTCCTTATAATGCTGGGGATGTATATCATGATGCGTCTGGAGTAAATCCAAATGTGAAAGCTGCAGTGCCTC
TTGTGCAAAATCGTGATATGCTGTCATCTCAAGGAGAAGATAAATCCCAGCCAAAAAAAATGACAAAGgtatgctttgttccaaacatacttgatggaactctatttcttgtgcaattataaaattggtattggttccaaagattgtcctttcaactgatcggaatgtgcccatgatctgtttattgtagAGGGAAAGGC
TTAGAGAGGAAAGAAAAATTAAAAAAGAGCAGGATAGTGCACTGAGATTGAAGCAGAAATTAATTCCGAAGGAGGAAAAGATGAATGCTCAGGTTGAAAGAAAAAAGCAGATGGAGGAAAATAGGAAGCCGAGAGAGGTTGCCAAATGCCAAGCTGCTACTGAGAAAGTTGCAATTTCAAAGAATCTAATGAAAGGGCAT
ATTGTAGAAATTCCAAGCAATTTTAGTGGGGGTGGTTTAGTGGCTGCCTGCTCATCCATGGAATGATTTTAAGGACGTCTGAAAGTTGTATATTGTAATTGGGACAGCTATGAGGTGTAGAATCCTCCACTGTTTCTATTATCTCTTCAGGGAACAGGTTGACAATTTCCAAAAGCTGAAATAATAATTGAAGAGAGCGT
ATGGTGTATATAATTCTATTCATCATCTTTTGGTCAGTGACAAAATCGAACTTTAAGATCCGGATGGTTCAAAGTTTTGTATATGAAATTTCCAAGTCGACAAGTTTTCTGTAACATTTCAACTGTCAGATACATATTGCTCCTGCTAGTTGTTTGCGGAGCAATTATTTAAAAATGTTGTTCTGTAATATCTCTCAATC
AACCATTGATTCAAGGAGATTTTCTAAATGCCGTGTTTTGTACACTGCTTGTGGTTCCGACTCTTCACTGTAGAGGCT