sp|Q8L774|SLP1_ARATH ----> Shewanella-like protein phosphatase 1

Intron 1 GTTATAAACT ... AATGTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	34.67	94	49.7	50
A2	41.92	75.7	69	40
A3	26.27	98	35.3	35.3
A4	38.31	67	63.3	20
A5	38.97	30.7	28	11.3
A6	20.21	184	51.3	43
A7	23.18	365	102.3	120.3
A8	26.56	376.7	131	143.7
A9	15.49	359.7	78	58
A10	19.16	251.7	55.7	65.7

>TRINITY_DN110588_c1_g2_i8 from sample A4 / Example spliced isoform

TTCTGAATCCCGATATCTCAAATGCATTGTTTTGTATCTCTGTATGTTTCAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCTCACCCAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGC
AGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGTCATAGATAATGCCTGGCATGGTGTCTTCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGAGATAGTCTGGTTGGCCTCAACAACCTTCCATCCAACTAAATC
CGGGGAG

>TRINITY_DN110588_c1_g2_i9 from sample A4 / Example unspliced isoform:

GGCATGGTGTCTTCACAAATGGTATTTTCAATTTTCTCTTAAACTTAGTATCATTGACTATGGAATTTCATTCAAATGGAGTATATAGTTCATAATAGTTAATAAATGTTATTTATGACACATTTGCAGGTGCCCAATTTCCACCCAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCA
GATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGgttataaacttatccaaactgatttctaggtgtactcgatgtttcttttccatgtgtttttcattt
ctgagtcctgatatctcaactcaggcagataatgcttggcatggtgtatccacaaatggtattttcagtttctcttaaatttagtattattgactatggaatttatttcaaatggagtatatagttcataatagttaataaatgttatttatgacatatttttcttctgaatgttgatatctcaaatgcattgttttgtg
tctctgaatgtttcagTCATAGATAATGCCTGGCATGGTGTCTTCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGAGATAGTCTGGTTGGCCTCAACAACCTTCCATCCAACTAAATCCGGGGAGATTTTCAATTTTCTCTTAAACTTAGTATCATTGACTATGGAATTTCATTCAAATGGAGTATATAGTTCAT

Intron 2 GCCCAATTTC ... ATCCGGGGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	75.44	14	43	11
A2	73.68	10	28	13
A3	80	5	20	4
A4	70.83	7	17	4
A5	50	6	6	3
A6	100	0	35	18
A7	86.9	11	73	18
A8	93.69	7	104	27
A9	87.1	4	27	11
A10	79.63	11	43	20

>TRINITY_DN110588_c1_g2_i9 from sample A4 / Example spliced isoform

GGCATGGTGTCTTCACAAATGGTATTTTCAATTTTCTCTTAAACTTAGTATCATTGACTATGGAATTTCATTCAAATGGAGTATATAGTTCATAATAGTTAATAAATGTTATTTATGACACATTTGCAGGTGCCCAATTTCCACCCAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCA
GATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGGTTATAAACTTATCCAAACTGATTTCTAGGTGTACTCGATGTTTCTTTTCCATGTGTTTTTCATTT
CTGAGTCCTGATATCTCAACTCAGGCAGATAATGCTTGGCATGGTGTATCCACAAATGGTATTTTCAGTTTCTCTTAAATTTAGTATTATTGACTATGGAATTTATTTCAAATGGAGTATATAGTTCATAATAGTTAATAAATGTTATTTATGACATATTTTTCTTCTGAATGTTGATATCTCAAATGCATTGTTTTGTG
TCTCTGAATGTTTCAGTCATAGATAATGCCTGGCATGGTGTCTTCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGAGATAGTCTGGTTGGCCTCAACAACCTTCCATCCAACTAAATCCGGGGAGATTTTCAATTTTCTCTTAAACTTAGTATCATTGACTATGGAATTTCATTCAAATGGAGTATATAGTTCAT

>TRINITY_DN110588_c1_g2_i9 from sample A4 / Example unspliced isoform:

GGCATGGTGTCTTCACAAATGGTATTTTCAATTTTCTCTTAAACTTAGTATCATTGACTATGGAATTTCATTCAAATGGAGTATATAGTTCATAATAGTTAATAAATGTTATTTATGACACATTTGCAGGTGCCCAATTTCCACCCAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCA
GATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGGTTATAAACTTATCCAAACTGATTTCTAGGTGTACTCGATGTTTCTTTTCCATGTGTTTTTCATTT
CTGAGTCCTGATATCTCAACTCAGGCAGATAATGCTTGGCATGGTGTATCCACAAATGGTATTTTCAGTTTCTCTTAAATTTAGTATTATTGACTATGGAATTTATTTCAAATGGAGTATATAGTTCATAATAGTTAATAAATGTTATTTATGACATATTTTTCTTCTGAATGTTGATATCTCAAATGCATTGTTTTGTG
TCTCTGAATGTTTCAGTCATAGATAATGCCTGGCATGGTGTCTTCACAAATGGTgcccaatttccacccagattctctgagatagtctggttggcctcaacaaccttccatccaactaaatccggggagATTTTCAATTTTCTCTTAAACTTAGTATCATTGACTATGGAATTTCATTCAAATGGAGTATATAGTTCAT

Intron 3 GTATTTTCAA ... ACATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	33.35	66.5	42	24
A2	35.47	65.5	32	39
A3	22.95	67.5	21	16
A4	31.08	43	19	18
A5	38.35	25.5	15	15
A6	3.09	129.5	6	1
A7	18.32	263	70	36
A8	17.11	267.5	71	33
A9	9.36	236	26	14
A10	19.93	176.5	41	35

>TRINITY_DN46036_c1_g1_i9 from sample A7 / Example spliced isoform

GTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGTCATAGATAATGCCTGGCATGGTGTCTTCACAAATGGTGCCCA
ATTTCCACCCAGATTCTCTGAGATAGTCTGGTTGGCCTCAACAACCTTCCATCCAACTAAATCCGGGGAGTCTACAGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGG

>TRINITY_DN46036_c1_g1_i6 from sample A7 / Example unspliced isoform:

GTTATAAACTTATACAAACTGATTTCTAGGTGTACTCGATGTTTCTTTTCCATGTGTTTTTCATTTCTGAGTCCTGATATCTCAACTCAGGCAGATAATGCTTGGCATGGTGTATCCACAAATGGTATTTTCAGTTTCTCTTAAATTTAGTATTATTGACTATGGAATTTATTTCAAATGGAGTACATAGTTCATAATAG
TTAATAAATGTTATTTATGACATATTTTTCTTCTGAATGTTGATATCTCAAATGCATTGTTTTGTGTCTCTGAATGTTTCAGTCATAGATAATGCCTGGCATGGTGTCTTCACAAATGgtattttcaattttctcttaaacttagtatcattgactatggaatttctttcaaatgaagtatatagttaattaatgttatt
tatgacacatttgcagGTGCCCAATTTCCACCCAGATTCTCTGAGATAGTCTGGTTGGCCTCAACAACCTTCCATCCAACTAAATCCGGGGAGTCTACA