sp|P51091|LDOX_MALDO ----> Leucoanthocyanidin dioxygenase

Intron 1 GTCTGATTTC ... GTGGTCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	48.72	40	35	41
A2	41.18	15	5	16
A3	70	6	7	21
A4	50	9	4	14
A5	53.85	9	6	15
A6	64.71	12	20	24
A7	51.97	55	29	90
A8	55.22	30	29	45
A9	44.34	59	29	65
A10	48.08	54	22	78

>TRINITY_DN46506_c1_g1_i12 from sample A7 / Example spliced isoform

TTTCTATCATACCTGGTTAGGTTACTTACAGCAACGATCTAGCCTCCTGCAACATGATCATTTCTGCAAGGATCAATTTGACACCCTCGCTGCACAAATTTCAAGGGCTGCAGAAAATTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTCTC
CTATTGCTCGAGTGCAACGTCTCCCCTTCAAGAGAAGGAAGCCTACGCTAACGATGCACAGAACACCTTCGGTTATGGCAGCAAAGTCGGATATTCGCCCGATTCAGAGGCTATATTGGATTGGGGTGACTATTTTCATAACGCTATTTGGCCTCCTGCTATGCGGGACCTGAGCAGATGGCCCATACAACTGGAAGCTA
TGGATTAATACGAGAGTTAATGTACGAGTTATTCGAAGTGTTGATCAAGGTACTTTCGCGTGATCTGGGCCTAGAGAGTGAAAACTCTCCGAACGAGAGCGTGGGAGGGAAGAGGAAGGGGATGTATATAGGAATGAATTACTACCCACCATGTCCTCAGCCGAATCTGGTGGTAGTACTGGCTCCCCATTCTGATCCCA
ACGTCCTGATCATTATTCTTCATGACCAAACCCCGGGGCTGCAAATTTGCATAGATGGAGGTTGGATTGATGTCGAATGCGTTCCAGGTGCTCTGATTGTGAACATAGCTGATCAGATGCAGGTAGGTTCATAATAACGACCTATCTAAACCTTGGTTTGATATGCATCTCCATTCCTGAAATTCCAGTATAATTACAGA
GCATGTGGCTTGACCGGACTAGGCTACCAACCATATTCAGTGTACCAAGTATAGCTTAGATCCAATGCTTTAGGCAAGAAGATTGCTGTTACTGCTGTAGGTTAATAAGTTGTATATTGTTGATGAGCAGATGTTGAGTAACCGGAAATACAAAAGCATTGAACACAGGGGCATGGTGCACAAGGATCGCTCAAGAATGT
CAGTGGCTGTGTTTTGCACTCCACGGCATGAGCTGGCGGTCTCACCCAGGAGAGAATTGATAGAC

>TRINITY_DN46506_c1_g1_i4 from sample A7 / Example unspliced isoform:

TTTCTATCATACCTGGTTAGGTTACTTACAGCAACGATCTAGCCTCCTGCAACATGATCATTTCTGCAAGGATCAATTTGACACCCTCGCTGCACAAATTTCAAGGGCTGCAGAAAATTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTCTC
CTATTGCTCGAGTGCAACGTCTCCCCTTCAAGAGAAGGAAGCCTACGCTAACGATGCACAGAACACCTTCGGTTATGGCAGCAAAGTCGGATATTCGCCCGATTCAGAGGCTATATTGGATTGGGGTGACTATTTTCATAACGCTATTTGGCCTCCTGCTATGCGGGACCTGAGCAGATGGCCCATACAACTgtctgatt
tcacttacactctcatttccattcaaaagtttgctctgtgtatactgtatttctgtggcgatgggggaagccttccctataagatctgatgagagattttgtggtcgcagGGAAGCTATGGATTAATACGAGAGTTAATGTACGAGTTATTCGAAGTGTTGATCAAGGTACTTTCGCGTGATCTGGGCCTAGAGAGTGAA
AACTCTCCGAACGAGAGCGTGGGAGGGAAGAGGAAGGGGATGTATATAGGAATGAATTACTACCCACCATGTCCTCAGCCGAATCTGGTGGTAGTACTGGCTCCCCATTCTGATCCCAACGTCCTGATCATTATTCTTCATGACCAAACCCCGGGGCTGCAAATTTGCATAGATGGAGGTTGGATTGATGTCGAATGCGT
TCCAGGTGCTCTGATTGTGAACATAGCTGATCAGATGCAGGTAGGTTCATAATAACGACCTATCTAAACCTTGGTTTGATATGCATCTCCATTCCTGAAATTCCAGTATAATTACAGAGCATGTGGCTTGACCGGACTAGGCTACCAACCATATTCAGTGTACCAAGTATAGCTTAGATCCAATGCTTTAGGCAAGAAGA
TTGCTGTTACTGCTGTAGGTTAATAAGTTGTATATTGTTGATGAGCAGATGTTGAGTAACCGGAAATACAAAAGCATTGAACACAGGGGCATGGTGCACAAGGATCGCTCAAGAATGTCAGTGGCTGTGTTTTGCACTCCACGGCATGAGCTGGCGGTCTCACCCAGGAGAGAATTGATAGAC

Intron 2 GTGACTATTT ... GTGGTCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	51.52	32	27	41
A2	41.67	14	4	16
A3	65.96	8	10	21
A4	57.89	8	8	14
A5	48.39	16	15	15
A6	64.44	8	5	24
A7	55.56	48	30	90
A8	63.64	24	39	45
A9	51.76	48	38	65
A10	58.51	39	32	78

>TRINITY_DN46506_c1_g1_i3 from sample A7 / Example spliced isoform

TTTCTATCATACCTGGTTAGGTTACTTACAGCAACGATCTAGCCTCCTGCAACATGATCATTTCTGCAAGGATCAATTTGACACCCTCGCTGCACAAATTTCAAGGGCTGCAGAAAATTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTCTC
CTATTGCTCGAGTGCAACGTCTCCCCTTCAAGAGAAGGAAGCCTACGCTAACGATGCACAGAACACCTTCGGTTATGGCAGCAAAGTCGGATATTCGCCCGATTCAGAGGCTATATTGGATTGGGGGAAGCTATGGATTAATACGAGAGTTAATGTACGAGTTATTCGAAGTGTTGATCAAGGTACTTTCGCGTGATCTG
GGCCTAGAGAGTGAAAACTCTCCGAACGAGAGCGTGGGAGGGAAGAGGAAGGGGATGTATATAGGAATGAATTACTACCCACCATGTCCTCAGCCGAATCTGGTGGTAGTACTGGCTCCCCATTCTGATCCCAACGTCCTGATCATTATTCTTCATGACCAAACCCCGGGGCTGCAAATTTGCATAGATGGAGGTTGGAT
TGATGTCGAATGCGTTCCAGGTGCTCTGATTGTGAACATAGCTGATCAGATGCAGATATTGAGTAACGGGAAATACAAAAGCATTGAACACAGGGGCATGGTGCACAAGGATCGCTCAAGACTAGGCTACCAACCATATTCAGTGTACCAAGTATAGCTTAGATCCAATGCTTTAGGCAAGAAGATTGCTGTTACTGCTG
TAGGTTAATAAGTTGTATATTGTTGATGAGTAGATATTGAGTAACGGGAAATAC

>TRINITY_DN46506_c1_g1_i8 from sample A7 / Example unspliced isoform:

TTTCTATCATACCTGGTTAGGTTACTTACAGCAACGATCTAGCCTCCTGCAACATGATCATTTCTGCAAGGATCAATTTGACACCCTCGCTGCACAAATTTCAAGGGCTGCAGAAAATTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTCTC
CTATTGCTCGAGTGCAACGTCTCCCCTTCAAGAGAAGGAAGCCTACGCTAACGATGCACAGAACACCTTCGGTTATGGCAGCAAAGTCGGATATTCGCCCGATTCAGAGGCTATATTGGATTGGGgtgactattttcataacgctatttggcctcctgctatgcgggacctgagcagatggcccatacaactgtctgatt
tcacttacactctcatttccattcaaaagtttgctctgtgtatactgtatttctgtggcgatgggggaagccttccctataagatctgatgagagattttgtggtcgcagGGAAGCTATGGATTAATACGAGAGTTAATGTACGAGTTATTCGAAGTGTTGATCAAGGTACTTTCGCGTGATCTGGGCCTAGAGAGTGAA
AACTCTCCGAACGAGAGCGTGGGAGGGAAGAGGAAGGGGATGTATATAGGAATGAATTACTACCCACCATGTCCTCAGCCGAATCTGGTGGTAGTACTGGCTCCCCATTCTGATCCCAACGTCCTGATCATTATTCTTCATGACCAAACCCCGGGGCTGCAAATTTGCATAGATGGAGGTTGGATTGATGTCGAATGCGT
TCCAGGTGCTCTGATTGTGAACATAGCTGATCAGATGCAGATATTGAGTAACGGGAAATACAAAAGCATTGAACACAGGGGCATGGTGCACAAGGATCGCTCAAGACTAGGCTACCAACCATATTCAGTGTACCAAGTATAGCTTAGATCCAATGCTTTAGGCAAGAAGATTGCTGTTACTGCTGTAGGTTAATAAGTTG
TATATTGTTGATGAGTAGATATTGAGTAACGGGAAATAC

Intron 3 GTAGGTTCAT ... TGATGAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	12.77	181	30	23
A2	13.43	232	37	35
A3	7.82	277	31	16
A4	9.64	164	25	10
A5	8.99	162	20	12
A6	8.24	78	9	5
A7	5.84	274	21	13
A8	8.82	217	16	26
A9	8.75	146	12	16
A10	4.3	256	9	14

>TRINITY_DN44689_c1_g1_i12 from sample A8 / Example spliced isoform

AAATGGCCCATACAACTCTCTGATTTCACGGAAGCTATGGATGAATACAGCAGAGAGTTGTCCAAGTTATTCGAAGTGTTGATGAAGGCATTGTCGCGTGATCTGCGCCTAGAGACTGAAAACTCTCTGACCAAACCCCGGGGCTGCGAATTTGCAAAGATGGAGCTTGGATTTATGTCGAGTGCGTTCCAGGTGATCTG
ATTATGAACATAGCTGATCAGATGGAGATGTTGAGTAACCGGAAATACAAAAGCATTGAACACAGGGGCATGGTGCACAAGGATCGCTCAAGAATGTCAGTGGCCGTGTTTTGCACTCCA

>TRINITY_DN44689_c1_g1_i5 from sample A8 / Example unspliced isoform:

AAATGGCCCATACAACTCTCTGATTTCACGGAAGCTATGGATGAATACAGCAGAGAGTTGTCCAAGTTATTCGAAGTGTTGATGAAGGCATTGTCGCGTGATCTGCGCCTAGAGACTGAAAACTCTCTGACCAAACCCCGGGGCTGCGAATTTGCAAAGATGGAGCTTGGATTTATGTCGAGTGCGTTCCAGGTGATCTG
ATTATGAACATAGCTGATCAGATGGAGgtaggttcataataacgatatccatctccattcctgaaattccagtataattacagagcacgtggcttgaccggactaggcttagatccaatgctttaggcaagaagattgctgttactgctgtaggttagtaagttgtatattgttgatgagcagATGTTGAGTAACCGGAA
ATACAAAAGCATTGAACACAGGGGCATGGTGCACAAGGATCGCTCAAGAATGTCAGTGGCCGTGTTTTGCACTCCA

Intron 4 GTAGGTTCAT ... TGATGAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	24.54	323.6	35.4	105.4
A2	20.66	386.4	41.2	101
A3	18.57	431.8	30.8	98.6
A4	20	267.2	28.8	67
A5	23.75	266.2	21	82.8
A6	19.47	128.4	9	31.2
A7	16.08	393.2	26.2	76
A8	21.1	349.2	16.8	93.6
A9	19.54	233.4	13.8	56.8
A10	14.07	371.8	9	61

>TRINITY_DN112697_c1_g1_i6 from sample A5 / Example spliced isoform

ATTGTGTGTTGTTGTGGTCTGTGATTGTGTGTTGTTGTGGTCTGTGATTGTGTGTTGTTGTGGTCTGTGTTTGGTGTGTATGTACTCTGAGAGGTGGATGCAGAGGCAGAGGCAGAGGCAGAGGCAGGCAGCACATTCTCTACCATGTCAAGGTCAAGATGGCTATGACTGTACCAAATTTTCCTTTATTCAACAGCATA
TGCCCTCTTATATGTGCAGTAGAAGACCTGAATTTCACATTCCGCATACAAATTGTATGCTGAGAGGCGATGGATATGGAGAATTGGGTATTTAGCCGAGTGAAAACCTTGGAAGACACTGGAATCCAAACGGTTCCACCGGAGTATGTGAGACGGGTGGAGAAAACCCATGATGATCCATACAGCTACGATCAAGCCCC
CTGCAAGGATCAATCTGAACCGTGAGACGGGTGATCAATCTGAAACAATTGCCGCACAAATTTCAAGGGCTGCAGAGACTTGGGGTGCTGCAGAGACTTGGGGTTTTTTCCAGATCATAAATCATGGCATCCCCGACTCTCTTATTGCTCCATCGCCCGACTCTCTTATAGCTCGAGTGCAAGCAGCCAGCAAGGCCTTC
TTCCAACTTCTAATTGAAGAGAAGGAAGCCTACGCTAACAAAGCACAGAATATCACCGACTATGGCAGCAGAATCGAAGTGCAAGCAGCGAGCAAGGCCTTCTTCCAACTTCCCATTCAAGAGAAGGAAGCCTACGGTAACAAAGCACAGAATATCACCGGCTATGGCAGCAGAATCGGATATTCGGCCGATTCAGAGGC
AAAGTTGGATTGGGGAAACTATTACTATAACGCTATTTGGCCTCCTGATATGAGGGACATGAGCAAATGGCCCATACAAGTCTCTGATTTCACGGAAGCTATGGATGAATACAGCAGAGAGTTGTCCAAGTTATTCGAAGTGTTGATGAAGGCATTGTCGCGTGATCTGCGCCTAGAGACTGAAAACTCTCTGACCAAAC
CCCGGGGCTGCAAATTTGCAAAGATGGAGCTTGGATTTATGTCGAGTGCGTTCCAGGTGATCTGATTATGAACATAGCTGATCAGATGGAGATGTTGAGTAACCGGAAATACAAAAGCATTGAACACAGGGGCATGGTGCACAAGGATCGCTCAAGAATGTCAGTGGCTGTGTTTTGCACTCCACGGCATGAGCTGGCGG
TCTCACCCAGGAGAGAATTGATAGACGCAGAGCATCCTCGATCGTACCACGGGGCTTCTTTTGGAGAGTATCTCACCAAGTTTTTCAAAAAAGGATTGGATGGAAAGGTTCAGAAAGTTTTTCAATAAAGGAGAATTTGGCTATGGCTGTACAAAATTCTC

>TRINITY_DN112697_c1_g1_i13 from sample A5 / Example unspliced isoform:

ATTGTGTGTTGTTGTGGTCTGTGATTGTGTGTTGTTGTGGTCTGTGATTGTGTGTTGTTGTGGTCTGTGTTTGGTGTGTATGTACTCTGAGAGGTGGATGCAGAGGCAGAGGCAGAGGCAGAGGCAGGCAGCACATTCTCTACCATGTCAAGGTCAAGATGGCTATGACTGTACCAAATTTTCCTTTATTCAACAGCATA
TGCCCTCTTATATGTGCAGTAGAAGACCTGAATTTCACATTCCGCATACAAATTGTATGCTGAGAGGCGATGGATATGGAGAATTGGGTATTTAGCCGAGTGAAAACCTTGGAAGACACTGGAATCCAAACGGTTCCACCGGAGTATGTGAGACGGGTGGAGAAAACCCATGATGATCCATACAGCTACGATCAAGCCCC
CTGCAAGGATCAATCTGAACCGTGAGACGGGTGATCAATCTGAAACAATTGCCGCACAAATTTCAAGGGCTGCAGAGACTTGGGGTGCTGCAGAGACTTGGGGTTTTTTCCAGATCATAAATCATGGCATCCATCAAGTGCAAGCAGCGAGCAAGTCCTTCTTCCAACTTCCCATTCAAGAGAAGGAAGCCTACGGTAAC
AAAGCACAGAATATCACCGGCTATGGCAGCAGAATCGGATATTCGGCCGATTCAGAGGCAAAGTTGGATTGGGGAAACTATTACTATAACGCTATTTGGCCTCCTGATATGAGGGACATGAGCAAATGGCCCATACAAGTCTCTGATTTCACGGAAGCTATGGATGAATACAGCAGAGAGTTGTCCAAGTTATTCGAAGT
GTTGATGAAGGCATTGTCGCGTGATCTGCGCCTAGAGACTGAAAACTCTCTGACCAAACCCCGGGGCTGCAAATTTGCAAAGATGGAGCTTGGATTTATGTCGAGTGCGTTCCAGGTGATCTGATTATGAACATAGCTGATCAGATGGAGgtaggttcataataacgatatccatctccattcctgaaattccagtataa
ttacagagcacgtggcttgaccggactaggctaccaaccatattcagtgtaccaagtatagcttagatccaatgctttaggcaagaagattgctgttactgctgtaggttagtaagttgtatattgttgatgagcagATGTTGAGTAACCGGAAATACAAAAGCATTGAACACAGGGGCATGGTGCACAAGGATCGCTCA
AGAATGTCAGTGGCTGTGTTTTGCACTCCACGGCATGAGCTGGCAGTCTCACCCAGGAGAGAATTGATAGACGCAGAGCATCCTCGATCGTACCACGGGGCTTCTTTTGGAGAGTATCTCACCAAGTTTTTCAAAAAAGGATTGGATGGAAAGGTTCAGAAAGTTTTTCAATAAAGGAGAATTTGGCTATGGCTGTACAA
AATTCTCTCCACCATATGCTGTACCAAATTCTCCACCAAGATTGCATCATTGATGATTGCAGTATGTTGCAGATGGAAGCAGATGGAAGGCCACCAGCTTACCATTTGCACCGGGGATTTGGATCAGGACGCAAATAGTAGGCTCGTTCACTT