sp|P25863|XERO1_ARATH ----> Dehydrin Xero 1

Intron 1 GTACAGTCAT ... ATCTGCTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.04	9	9	26
A2	75.03	11	24	42
A3	68.42	15	16	49
A4	82.61	12	38	76
A5	84.62	2	9	13
A6	76.23	55.5	101	255
A7	74.33	28.5	46	119
A8	71.83	30	47	106
A9	72.93	31	56	111
A10	73.27	53	89	201.5

>TRINITY_DN42682_c0_g3_i6 from sample A8 / Example spliced isoform

CTGGAATTTTGACAAGTTGCTGTGCCGGACCACCAGGACCGCGCTCTCTTCGGTCTCTTCGGCAAGAAGAAGGAAGAGGAGCAGGGAATGCAAACTCCTGCTACTCACACTCACACTCAGCCTCAGACTCAGTCTGCTAATCTCTATTCAACTAATCCTCCGCATGCTGCTGCAGTAGATCAGCAGTATGGCCAGGGTTA
CGCCCACGGTCATGAGGGACAATATACTGCTGGGGAAGTTGATCAGAAACAGCAACACACCGGTTTGATGGGAAAGCTTCACCGCACAAACAGCTCCAGCTCCAGCTCTTCGAGCGATGAAGAGGAAGGAGGGAAGAAGAAAGAAGGAGGGAGGAAGAAGAAAGGTCTGAAGGACAAGATCAAGGAAAAACTCCCTGGCG
GACAGCATTCTTCAGATCAGCCTGCACAGCCTGGGCATGAAGGGGAGAAGAAGGAAGGGCTGGTTGATAAAATCAAAGACAAGCTCCCTGGACACCATAATAAGGCATAGGGAGAAGAGGAAGACAAGCCCGGCCACTTGAAGGCTTCGTCTGTTTGTTTAACGCATCCCCTCCTTAGAATGTGTGTGTTACTTATCTGA
TTTAGTGTAATAATGTGTGTTCGAGGGGAGAAAATAAATAATATCAATGTCATTCACTGTACAGTGTACACTGCCTTGTTTCCTATTCAGCCAGCTTTGGCTGGGAGGGCCTGTGCCCTTCTCTCTGTAAACAAGGGCTTTCTATCTATACAGTGGACTATATTATCATCATCATTTACATTTCGATTTTGTTTTGTAAC
ATTTGATACATCTAATAGAGTCCTCTAATAAAGGCTATTATGATCTTTAATATGATTTTTTAGCATGGGATATTTATGGTTGGATTATAATTTTGATA

>TRINITY_DN42682_c0_g3_i1 from sample A8 / Example unspliced isoform:

CTCGAATCTCGTCTGGAATTTTGACAAGTTgtacagtcattctgtatacttcaattcgttggttgaaatacatttgctttgcttagaacttagaattagtatggccgaacaagttccatctgctcagGCTGTGCCGGACCACCAGGACCGCGCTCTCTTCGGTCTCTTCGGCAAGAAGAAGGAAGAGGAGCAGGGAATGC
AAACTCCTGCTACTCACACTCACACTCAGCCTCAGACTCAGTCTGCTAATCTCTATTCAACTAATCCTCCGCATGCTGCTGCAGTAGATCAGCAGTATGGCCAGGGTTACGCCCACGGTCATGAGGGACAATATACTGCTGGGGAAGTTGATCAGAAACAGCAACACACCGGTTTGATGGGAAAGCTTCACCGCACAAAC
AGCTCCAGCTCCAGCTCTGTAAGTCTGTCTCTCTCTTTCTCTTTGCTGTGTTCTGTGTGATCTCTTCAGTGCAGCATTTAATAAATGCTAAGCTGCGCTTAATAAATGTTGCATTGCCCTTTTACTAAATGCTATGTACTACACTTGGGATATCAACTCTTGAATTGAGACAAGTGGGATCAAATTCAACTGCTGATACC
TCCACAGAGGCAACATAATTAAACATTAAACACTCTACTGAGTGGTTATTGAATCCCTCTTTCCTTATGCTATTATGCTCTACTGGGTGGTTATTGAACGCCTTCTTTGCTTCCACCCTTACCCTTTGTTGGTTGATTATGTAATGGCAGTCGAGCGATGAAGAGGAAGGAGGGAAGAAGAAAGAAGGAGGGAGGAAGAA
GAAAGGTCTGAAGGACAAGATCAAGGAAAAACTCCCTGGCGGACAGCATTCTTCAGATCAGCCTGCACAGCCTGGGCATGAAGGGGAGAAGAAGGAAGGGCTGGTTGATAAAATCAAAGACAAGCTCCCTGGACACCATAATAAGGCATAGGGAGAAGAGGAAGACAAGCCCGGCCACTTGAAGGCTTCGTCTGTTTGTT
TAACGCATCCCCTCCTTAGAATGTGTGTGTTACTTATCTGATTTAGTGTAATAATGTGTGTTCGAGGGGAGAAAATAAATAATATCAATGTCATTCACTGTACAGTGTACACTGCCTTGTTTCCTATTCAGCCAGCTTTGGCTGGGAGGGCCTGTGCCCTTCTCTCTGTAAACAAGGGCTTTCTATCTATACAGTGGACT
ATATTATCATCATCATTTACATTTCGATTTTGTTTTGTAACATTTGATACATCTAATAGAGTCCTCTAATAAAGGCTATTATGATCTTTAATATGATTTTTTAGCATGGGATATTTATGGTTGGATTATAATTTTGATA

Intron 2 GTAAGTCTGT ... GTAATGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	4.19	28.5	2	0.5
A2	17.67	24.5	4	6.5
A3	27.78	26	17	3
A4	3.45	28	1	1
A5	22.22	7	2	2
A6	6.77	241.3	20	15
A7	9.32	116.8	8	16
A8	8.02	132	11	12
A9	5.37	123.8	6	8
A10	6.08	173.5	11	11.5

>TRINITY_DN42682_c0_g3_i5 from sample A8 / Example spliced isoform

CTCGAATCTCGTCTGGAATTTTGACAAGTTGTACAGTCATTCTGTATACTTCAATTCGTTGGTTGAAATACATTTGCTTTGCTTAGAACTTAGAATTAGTATGGCCGAACAAGTTCCATCTGCTCAGGCTGTGCCGGACCACCAGGACCGCGCTCTCTTCGGTCTCTTCGGCAAGAAGAAGGAAGAGGAGCAGGGAATGC
AAACTCCTGCTACTCACACTCACACTCAGCCTCAGACTCAGTCTGCTAATCTCTATTCAACTAATCCTCCGCATGCTGCTGCAGTAGATCAGCAGTATGGCCAGGGTTACGCCCACGGTCATGAGGGACAATATACTGCTGGGGAAGTTGATCAGAAACAGCAACACACCGGTTTGATGGGAAAGCTTCACCGCACAAAC
AGCTCCAGCTCCAGCTCTTCGAGCGATGAAGAGGAAGGAGGGAAGAAGAAAGAAGGAGGGAGGAAGAAGAAAGGTCTGAAGGACAAGATCAAGGAAAAACTCCCTGGCGGACAGCATTCTTCAGATCAGCCTGCACAGCCTGGGCATGAAGGGGAGAAGAAGGAAGGGCTGGTTGATAAAATCAAAGACAAGCTCCCTGG
ACACCATAATAAGGCATAGGGAGAAGAGGAAGACAAGCCCGGCCACTTGAAGGCTTCGTCTGTTTGTTTAACGCATCCCCTCCTTAGAATGTGTGTGTTACTTATCTGATTTAGTGTAATAATGTGTGTTCGAGGGGAGAAAATAAATAATATCAATGTCATTCACTGTACAGTGTACACTGCCTTGTTTCCTATTCAGC
CAGCTTTGGCTGGGAGGGCCTGTGCCCTTCTCTCTGTAAACAAGGGCTTTCTATCTATACAGTGGACTATATTATCATCATCATTTACATTTCGATTTTGTTTTGTAACATTTGATACATCTAATAGAGTCCTCTAATAAAGGCTATTATGATCTTTAATATGATTTTTTAGCATGGGATATTTATGGTTGGATTATAAT
TTTGATA

>TRINITY_DN42682_c0_g3_i1 from sample A8 / Example unspliced isoform:

CTCGAATCTCGTCTGGAATTTTGACAAGTTGTACAGTCATTCTGTATACTTCAATTCGTTGGTTGAAATACATTTGCTTTGCTTAGAACTTAGAATTAGTATGGCCGAACAAGTTCCATCTGCTCAGGCTGTGCCGGACCACCAGGACCGCGCTCTCTTCGGTCTCTTCGGCAAGAAGAAGGAAGAGGAGCAGGGAATGC
AAACTCCTGCTACTCACACTCACACTCAGCCTCAGACTCAGTCTGCTAATCTCTATTCAACTAATCCTCCGCATGCTGCTGCAGTAGATCAGCAGTATGGCCAGGGTTACGCCCACGGTCATGAGGGACAATATACTGCTGGGGAAGTTGATCAGAAACAGCAACACACCGGTTTGATGGGAAAGCTTCACCGCACAAAC
AGCTCCAGCTCCAGCTCTgtaagtctgtctctctctttctctttgctgtgttctgtgtgatctcttcagtgcagcatttaataaatgctaagctgcgcttaataaatgttgcattgcccttttactaaatgctatgtactacacttgggatatcaactcttgaattgagacaagtgggatcaaattcaactgctgatacc
tccacagaggcaacataattaaacattaaacactctactgagtggttattgaatccctctttccttatgctattatgctctactgggtggttattgaacgccttctttgcttccacccttaccctttgttggttgattatgtaatggcagTCGAGCGATGAAGAGGAAGGAGGGAAGAAGAAAGAAGGAGGGAGGAAGAA
GAAAGGTCTGAAGGACAAGATCAAGGAAAAACTCCCTGGCGGACAGCATTCTTCAGATCAGCCTGCACAGCCTGGGCATGAAGGGGAGAAGAAGGAAGGGCTGGTTGATAAAATCAAAGACAAGCTCCCTGGACACCATAATAAGGCATAGGGAGAAGAGGAAGACAAGCCCGGCCACTTGAAGGCTTCGTCTGTTTGTT
TAACGCATCCCCTCCTTAGAATGTGTGTGTTACTTATCTGATTTAGTGTAATAATGTGTGTTCGAGGGGAGAAAATAAATAATATCAATGTCATTCACTGTACAGTGTACACTGCCTTGTTTCCTATTCAGCCAGCTTTGGCTGGGAGGGCCTGTGCCCTTCTCTCTGTAAACAAGGGCTTTCTATCTATACAGTGGACT
ATATTATCATCATCATTTACATTTCGATTTTGTTTTGTAACATTTGATACATCTAATAGAGTCCTCTAATAAAGGCTATTATGATCTTTAATATGATTTTTTAGCATGGGATATTTATGGTTGGATTATAATTTTGATA