sp|Q9M2S6|SDIR1_ARATH ----> E3 ubiquitin-protein ligase SDIR1
Intron 1 GTACGCAATG ... GGTCAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 82.5 | 13.8 | 52 | 74 |
| A2 | 75.15 | 19.2 | 57 | 56 |
| A3 | 66.91 | 22.4 | 38 | 49 |
| A4 | 85.39 | 4.4 | 14 | 34 |
| A5 | 84.13 | 2.6 | 9 | 16 |
| A6 | 70.03 | 10.8 | 16 | 30 |
| A7 | 81.33 | 10.6 | 33 | 52 |
| A8 | 80.89 | 8 | 12 | 44 |
| A9 | 69.56 | 25 | 54 | 55 |
| A10 | 66.54 | 15.8 | 25 | 35 |
>TRINITY_DN115546_c0_g1_i6 from sample A2 / Example spliced isoformCCAATTTATTTTTTCTCATAATTTGAATTATTTTTCTGACTTTGTTTGGTTGGGCAGCACCATTGTTATCCGCTCTGCATCGGTCGACTGCTGCCGTTGCTCCTCTCTGTTTAAAAGAATTCGACCGAGGTGAAGTGTTCGATTCGTCTTGCGGGAATAAGAAAAATCTACCGAAGAATAAAATAGATTTGCTTGAAAAT
CAGAGTGCTTTTTGCCATATTTGTCTGCAAATGATGTCAAGTTTGTCAGGGCATGAATTGTTGGAGGTTCCAGACACTCCAGATCGTTTGGATCTGCAGAGTGGTGGACGCTCACATAGGGCTGTTGATGCAAGGAATCTGAAACCACTTTGCTTTCGGGAGAAAAGTCTAGAAAGCAAAAACTTAATTGGCAGAAGACA
GGATCAGATTGCAGGAGAGAAAACCATTAGAGGATCTTCTAATGATTCAGAGCAGAATGAGAAAAGGCAAGATGTGGAGAGAGTAGTTAAGATTGGCTTGCTGAATCGGAGGCCAAGATCTAGTTGTAAAGGACAAGGTAATGTACAACCAGAAGGCACAGCTAACTCTTTATTACCTTCAGAGATGGTCCCTACACAAC
CTTTCAGCCATCAGACACCAAGATTGCCGAGACCATCGTTCTTGAAAACTTGCAATAAAATGTCTGCAGAAGATGAAAATGTTCAACATCTCAATGAATCTCCTAATGATAAAATGGAAGTTAGAAGGAAAGGCAAGGAAATTATGTCTTCTCATGGATTTCGCTCACCTAAGCAGCATCAAAGAAAAGCCCTGGTACTT
AAGCCTGATGAGAACA
>TRINITY_DN115546_c0_g1_i5 from sample A2 / Example unspliced isoform:CCAATTTATTTTTTCTCATAATTTGAATTATTTTTCTGACTTTGTTTGGTTGGGCAGCACCATTGTTATCCGCTCTGCATCGGTCGACTGCTGCCGTTGCTCCTCTCTGTTTAAAAGAATTCGACCGAGGTGAAGTGTTCGATTCGTCTTGCGGGAATAAGAAAAATCTACCGAAGAATAAAATAGATTTGCTTGAAAAT
CAGAGTGCTTTTTGCCATATTTGTCTGCAAATGATGTCAAGTTTGTCAGGGCATGAATTGTTGGAGGTTCCAGACACTCCAGATCGTTTGGATCTGCAGAGTGGTGGACGCTCACATAGGGCTGTTGATGCAAGGAATCTGAAACCACTTTGCTTTCGGGAGAAAAGTCTAGAAAGCAAAAACTTAATTGGCAGAAGACA
GGATCAGATTGCAGGAGAGAAAACCATTAGAGGATCTTCTAATGATTCAGAGCAGAATGAGAAAAGGCAAGATGTGGAGAGAGTAGTTAAGATTGGCTTGCTGAATCGGAGGCCAAGATCTAGTTGTAAAGGACAAGGTAATGTACAACCAGAAGGCACAGCTAACTCTTTATTACCTTCAGAGATGGTCCCTACACAAC
CTTTCAGCCATCAGACACCAAGATTGCCGAGACCATCGTTCTTGAAAACTTGCAATAAAATGTCTGCAGAAGATGAAAATGTTCAACATCTCAATGAATCTCCTAATGATAAAATGGAAGTTAGAAGGAAAGGCAAGGAAATTATGTCTTCTCATGGATTTCGCTCACCTAAGCAGCATCAAAGAAAAGCCCTGgtacgc
aatggacgcatatgtccaataaatattgatgttgatgctactatatcagacaagtctgtgaaggaaataccagaggtgtgtgacaacatgaaagtgagtgttatacatgatgcatatacagatagtaatggtttggtcaatcagGTACTTAAGCCTGATGAGAACAGTTTACTCCATGTCTCTCAACAAGAAGATAGAAG
AAAAGGCAAAGGAATTATTTCTGGTCATATTATTGGATGCAAGGATAGTGATGCCCCATTACGACAGAGCAGGAAGAGAATGAGGGCAAATGCATTATCTTGTGAAGAAGGTGATGAAGCAGCGGAATCTTATAACAGTACAGGTCCTAGGCTTGGTGGTTCGTCATGTTCTCCTAGCAAGGTCAGCGGCCTAGACTGTG
GAAATGATAATCTGCTGAATAGGTCAATTGATAATGCATCTGAAGTGTATACACAACTGGCCAAAAAGCCGATAGGGTGTTCCCAAATACATTGCAATGGAAATAAGTCATTAAGATCTGACAGAAATAGAGCTCGTGCACCATATTTGTCTTTGGCGGGAGATCAAGAACATTGTTTTGAAGCAGCCTCCTCTAGTTGT
TTGCCTGACTCTTGTAATCAACAGCAGCAGGCTAATGTTAGCAGAAATCTTCAACATTCATTAAAAAGAAGGCGCATGCAAATTACTTCCGAAGCTCAAGCATCATCAACATTGGCTAATTCTGATGATTCACCAGAGGTTATATTCGTGAAGTCATCTAGACCGTTGAGAAACAATTCATCTTCTACCAGTAGTACTAA
TGCTGTTCTCCATGCACCTGCGTGTGATGTCAATGAGGCTGCTAGTCATGAGCCCATTGATGTTGATAGTTTGGGATCGCCTGCACCTGGAAGTGTAAACATAGACCAAAGTAATGGGGAGGCAGATGCCAGGGCTAGACAAATAGAAGAAGATGAAATGTTGGCCAGGCAGCTCCAAGAGGCATTTCAAGATGAGGTTT
TGAGAGACGGTTATGAGAATCAAGATGGTCATTTACATTGGACTGTACAGAGGGAAAGAAGTACCCGCATTTCTGCCCCTGCATCTGGATCTGTTTTGCCAGCCAGACCTCATGGCTTTCCTATGAGTTTTCGAACTGGAGAAACAAGTGGAAGAGAATCAGTCCGGTCTTTGAGAAATCTTCCAACAAGGCCTAATAAT
CGGCTTGGTCCTGCAATGGTTGCCACAGTCAGGAGGAGAGAACCAGTTTTAGGAAGATTAGGCCGTCTAAGAAGAAACATGGACGAAGGCTTTTCAATGAGATCAGTTGATGGAAGAAGATTTCATTTCCCATCTCAGATGGATTTAGATATGAGGATAGATTTACTAGAAGCCCTGGAACGTGCTGCTGAAGGCCATAT
AACTAATGGGCATCTTGCTGGAATCCAACGGGACTTCAATGAGAATGATTATGAGATGTTATTGGCACTTGATGATGGTAATGAAAGTCGTGGTGCATCACAAAGGCATATAGACCGCCTGCCTGTTTCAACTGTTCAGAATGATGTTTCAGATGAAACTTGTTCTATTTGTTTAGAGTTGCCAAGAGCTGGTGAAGCTA
TTCGACACCTGTTATGCATGCATAAATTCCATAAAGATTGTATTGATCCTTGGCTGTCAAGACAAGCGACTTGTCCTATATGCAAGTCATCTATCTAAATACATTCTGCTATTCAAAAACCAATTGATGCCTTTATGCGAAAAGGCAGTTTTGAAGGAGGACGTGAGATTATATGATAATTTGGTATGATATCCAAGGTA
GGAACATGTGTTGTTCCACTTGCAGTACAAAGTGATTGTCTTTAATGCTTATGAATCAATGAGTCATCTGTTGATAATTTTTTTAATTCCATGATTTTCTAGCCATTTATGTGAATGTATAACTTGATGGTTTCTGACCTCCTAGGCACATTGTTCTAGCTTTTTTCCATCCAGTTTAATTTCAGCCAGTATGGTGCTGG
CTTTATATTTCCCCTAAAATCCAATTTTTATTGAAAATTATATTCTTCTTACCAAG
Intron 2 GTAAAGTAAT ... ATGCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.88 | 63 | 15.5 | 22 |
| A2 | 12.2 | 36 | 5.5 | 5 |
| A3 | 16.36 | 46 | 7 | 9 |
| A4 | 11.9 | 37 | 2 | 5 |
| A5 | 18.75 | 13 | 2 | 3 |
| A6 | 21.43 | 77 | 5 | 21 |
| A7 | 12.78 | 116 | 10 | 17 |
| A8 | 15.53 | 87 | 7 | 16 |
| A9 | 27.78 | 78 | 5 | 30 |
| A10 | 24.21 | 72 | 3.5 | 23 |
>TRINITY_DN115097_c0_g1_i1 from sample A1 / Example spliced isoformTATTTTTTCTCATAATTTGAATTATTTTTCTGACTTTGTTTGGTTGGGCAGCACCATTGTTATCCGCTCTGCATCGGTCGACTGCTGCCGTTGCTCCTCTCTGTTTAAAAGAATTCGACCGAGGTGAAGTGTTCGATTCGTCTTGCGGGAATAAGAAAAATCTACCGAAGAATAAAATAGATTTGCTTGAAAATCAGAGT
GCTTTTTGCCATATTTGTCTGCAAATGATGTCAAGTTTGTCAGGGCATGAATTGTTGGAGGTTCCAGACACTCCAGATCGTTTGGATCTGCAGAGTGGTGGACGCTCACATAGGGCTGTTGATGCAAGGAATCTGAAACCACTTTGCTTTCGGGAGAAAAGTCTAGAAAGCAAAAACTTAATTGGCAGAAGACAGGATCA
GATTGCAGGAGAGAAAACCATTAGAGGATCTTCTAATGATTCAGAGCAGAATGAGAAAAGGCAAGATGTGGAGAGAGTAGTTAAGATTGGCTTGCTGAATCGGAGGCCAAGATCTAGTTGTAAAGGACAAGGTAATGTACAACCAGAAGGCACAGCTAACTCTTTATTACCTTCAGAGATGGTCCCTACACAACCTTTTT
GCCATCAGACACCAAGATTGCAGAGACCATCGTTCTTGAAAACTTGCAATAAAATGTCTGCAGAAGATGAAAATGTTCAACATCTCAATGAATCTCCTAATGATAAAATGGAAGTTAGAAGGAAAGGCAAGGAAATTATGTCTTCTCATGGATTTCGCTCACCTAAGCAGCATCAAAGAAAAGCCCTGGTACGCAATGGA
CGCATATGTCCAATAAATATTGATGTTGATGCTACTATATCAGACAAGTCTGTGAAGGAAATACCAGAGGTGTGTGACAACATGAAAGTGAGTGTTATACATGATGCATATACAGATAGTAATGGTTTGGTCAATCAGGTACTTAAGCCTGATGAGAACAGTTTACTCCATGTCTCTCAACAAGAAGATAGAAGAAAAGG
CAAAGGAATTATTTCTGGTCATATTATTGGATGCAAGGATAGTGATGCCCCATTACGACAGAGCAGGAAGAGAATGAGGGCAAATGCATTATCTTGTGAAGAAGGTGATGAAGCAGCGGAATCTTATAACAGTACAGGTCCTAGGCTTGGTGGTTCGTCATGTTCTCCTAGCAAGGTCAGCGGCCTAGACTGTGGAAATG
ATAATCTGCTGAATAGGTCAATTGATAATGCATCTGAAGTGTATACACAACTGGCCAAAAAGCCGATAGGGTGTTCCCAAATACATTGCAATGGAAATAAGTCATTAAGATCTGACAGAAATAGAGCTCGTGCACCATATTTGTCTTTGGCGGGAGATCAAGAACATTGTTTTGAAGCAGCCTCCTCTAGTTGTTTGCCT
GACTCTTGTAATCAACAGCAGCAGGCTAATGTTAGCAGAAATCTTCAACATTCATTAAAAAGAAGGCGCATGCAAATTACTTCCGAAGCTCAAGCATCATCAACATTGGCTAATTCTGATGATTCACCAGAGGTTATATTCGTGAAGTCATCTAGACCGTTGAGAAACAATTCATCTTCTACCAGTAGTACTAATGCTGT
TCTCCATGCACCTGCGTGTGATGTCAATGAGGCTGCTAGTCATGAGCCCATTGATGTTGATAGTTTGGGATCGCCTGCACCTGGAAGTGTAAACATAGACCAAAGTAATGGGGAGGCAGATGCCAGGGCTAGACAAATAGAAGAAGATGAAATGTTGGCCAGGCAGCTCCAAGAGGCATTTCAAGATGAGGTTTTGAGAG
ACGGTTATGAGAATCAAGATGGTCATTTACATTGGACTGTACAGAGGGAAAGAAGTACCCGCATTTCTGCCCCTGCATCTGGATCTGTTTTGCCAGCCAGACCTCATGGCTTTCCTATGAGTTTTCGAACTGGAGAAACAAGTGGAAGAGAATCAGTCCGGTCTTTGAGAAATCTTCCAACAAGGCCTAATAATCGGCTT
GGTCCTGCAATGGTTGCCACAGTCAGGAGGAGAGAACCAGTTTTAGGAAGATTAGGCCGTCTAAGAAGAAACATGGACGAAGGCTTTTCAATGAGATCAGTTGATGGAAGAAGATTTCATTTCCCATCTCAGATGGATTTAGATATGAGGATAGATTTACTAGAAGCCCTGGAACGTGCTGCTGAAGGCCATATAACTAA
TGGGCATCTTGCTGGAATCCAACGGGACTTCAATGAGAATGATTATGAGATGTTATTGGCACTTGATGATGGTAATGAAAGTCGTGGTGCATCACAAAGGCATATAGACCGCCTGCCTGTTTCAACTGTTCAGAATGATGTTTCAGATGAAACTTGTTCTATTTGTTTAGAGTTGCCAAGAGCTGGTGAAGCTATTCGAC
ACCTGTTATGCATGCATAAATTCCATAAAGATTGTATTGATCCTTGGCTGTCAAGACAAGCGACTTGTCCTATATGCAAGTCATCTATCTAAATACATTCTGCTATTCAAAAACCAATTGATGCCTTTATGCGAAAAGGCAGTTTTGAAGGAGGACGTGAGATTATATGATAATTTGGTATGATATCCAAGGTAGGAACA
TGTGTTGTTCCACTTGCAGTACAAAGTGATTGTCTTTAATGCTTATGAATCAATGAGTCATCTGTTGATAATTTTTTTAATTCCATGATTTTCTAGCCATTTATGTGAATGTATAACTTGATGGTTTCTGACCTCCTAGGCACATTGTTCTAGCTTTTTTCCATCCAGTTTAATTTCAGCCAGTATGGTGCTGGCTTTAT
ATTTCCCCTAAAATCCAATTTTTATTGAAAATTATATTCTTCTTACCACTTGGCATAATCTTTACATTGTTCTTTTGTCACATTCTAC
>TRINITY_DN115097_c0_g1_i2 from sample A1 / Example unspliced isoform:AAATGATAATCTGCTGAATAGGTCAATTGATAATGCATCTGAAGTGTATACACAACTGGCCAAAAAGCCGATAGGGTGTTCCCAAATACATTGCAATGGAAATAAGTCATTAAGATCTGACAGAAATAGAGCTCGTGCACCATATTTGTCTTTGGCGGGAGATCAAGAACATTGTTTTGAAGCAGCCTCCTCTAGTTGTT
TGCCTGACTCTTGTAATCAACAGCAGCAGGCTAATGTTAGCAGAAATCTTCAACATTCATTAAAAAGAAGGCGCATGCAAATTACTTCCGAAGCTCAAGCATCATCAACATTGGCTAATTCTGATGATTCACCAGAGGTTATATTCGTGAAGTCATCTAGACCGTTGAGAAACAATTCATCTTCTACCAGTAGTACTAAT
GCTGTTCTCCATGCACCTGCGTGTGATGTCAATGAGGCTGCTAGTCATGAGCCCATTGATGTTGATAGTTTGGGATCGCCTGCACCTGGAAGTGTAAACATAGACCAAAGTAATGGGGAGGCAGATGCCAGGGCTAGACAAATAGAAGAAGATGAAATGTTGGCCAGGCAGCTCCAAGAGGCATTTCAAGATGAGGTTTT
GAGAGACGGTTATGAGgtaaagtaatggagacttgttcaagtttctcaatcctgtcgactttccataataatgcacttcttgcattctagaatatcatgctttgaagtttattgatccaagtacattagataaaaggcttgtagcttcagttcagaggaatggtttttgtggtttcaaaggttttggaatcaaactcgga
tattattgcatcttacatgaactaagctttccattgtctatacatagttcctggtttgaatgcatgcagAATCAAGATGGTCATTTACATTGGACTGTACAGAGGGAAAGAAGTACCCGCATTTCTGCCCCTGCATCTGGATCTGTTTTGCCAGCCAGACCTCATGGCTTTCCTATGAGTTTTCGAACTGGAGAAACAAG
TGGAAGAGAATCAGTCCGGTCTTTGAGAAATCTTCCAACAAGGCCTAATAATCGGCTTGGTCCTGCAATGGTTGCCACAGTCAGGAGGAGAGAACCAGTTTTAGGAAGATTAGGCCGTCTAAGAAGAAACATGGACGAAGGCTTTTCAATGAGATCAGTTGATGGAAGAAGATTTCATTTCCCATCTCAGATGGATTTAG
ATATGAGGATAGATTTACTAGAAGCCCTGGAACGTGCTGCTGAAGGCCATATAACTAATGGGCATCTTGCTGGAATCCAACGGGACTTCAATGAGAATGATTATGAGATGTTATTGGCACTTGATGATGGTAATGAAAGTCGTGGTGCATCACAAAGGCATATAGACCGCCTGCCTGTTTCAACTGTTCAGAATGATGTT
TCAGATGAAACTTGTTCTATTTGTTTAGAGTTGCCAAGAGCTGGTGAAGCTATTCGACACCTGTTATGCATGCATAAATTCCATAAAGATTGTATTGATCCTTGGCTGTCAAGACAAGCGACTTGTCCTATATGCAAGTCATCTATCTAAATACATTCTGCTATTCAAAAACCAATTGATGCCTTTATGCGAAAAGGCAG
TTTTGAAGGAGGACGTGAGATTATATGATAATTTGGTATGATATCCAAGGTAGGAACATGTGTTGTTCCACTTGCAGTACAAAGTGATTGTCTTTAATGCTTATGAATCAATGAGTCATCTGTTGATAATTTTTTTAATTCCATGATTTTCTAGCCATTTATGTGAATGTATAACTTGATGGTTTCTGACCTCCTAGGCA
CATTGTTCTAGCTTTTTTCCATCCAGTTTAATTTCAGCCAGTATGGTGCTGGCTTTATATTTCCCCTAAAATCCAATTTTTATTGAAAATTATATTCTTCTTACCACTTGGCATAATCTTTACATTGTTCTTTTGTCACATTCTAC