sp|Q9LYD9|EMF1_ARATH ----> Protein EMBRYONIC FLOWER 1
Intron 1 GTCAGTGCCC ... GTATTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.39 | 40 | 27 | 25 |
| A2 | 27.16 | 59 | 20 | 24 |
| A3 | 29.14 | 62 | 22 | 29 |
| A4 | 30 | 56 | 19 | 29 |
| A5 | 27.78 | 26 | 14 | 6 |
| A6 | 100 | 0 | 4 | 0 |
| A7 | 20 | 18 | 6 | 3 |
| A8 | 40 | 3 | 1 | 3 |
| A9 | 36.36 | 7 | 2 | 6 |
| A10 | 18.92 | 15 | 2 | 5 |
>TRINITY_DN113752_c1_g1_i3 from sample A3 / Example spliced isoformGAAAAAGCAAGACTATTATTATTATTGTGACGTGTATGCATTCTATTGGACGTTATAACAATACTCTGTCGCTTCCGCAGGGAATTAGTCGGACTGCATCATTTTGCGTTTTATCTTATTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTG
CCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGG
ATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGAT
GATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGGGTTTGTATAATGAGCAGGTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCCGAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGT
TGACGACAAGATTTCTATCGAAAGCTCAACATGCGAGCGTTTCAGTATTCGAGGTTATGTTGAAACAATACGTACGCTGGATAGAAACACTTGCTGGCCATTTCCTCAGCACTTACTGCAAACTAGATTGAAGGAAGCAGGCAATCTGGCTCTGCCTCCTCTAGAAATTCCTAGCTACAGATGGTGGAATTGTGAAAGCT
GTTTAGCGGACATCATAACTTCTGCTGAGAGCCCAATTGAGAAAGAGTATTTAACGTACTCAGATGCTTCTATGCAGGCCTGTGATGGTAACTTTGATCGTGGATGCCCGATGCTCTTGGCTACTTCCAATGTTGATATTCAGGAGAAACAAAAGGAAAATATGCTAGATGGCACAGAAATAGTAGAGAGTAGTAATGTT
GATTTAATGCCAGGGGACGCTGTAGGCTCTTTTGCATATGAAACTGACAGAGAGAAGAAATATGGGGTAGTCACAGATTGTAAAGGAGAATATGGAAGAACTGAAAGTATTGTTCCAATGCAGCTAGAAAATGACAAATCTGAAATTATAGATTTGAAAGAGAAGAAAAGTGGAATCCCTCACTGTGTACCAAATTCTAA
AATCTCCGAGGAAACCATCAATTTAATCGATAGTGACGAGAAAGTAGAATGTCCAGAGATGGGTCAGACGGTAGTGGAAACAATGCCATTCATGCTAGTGACTAAAACGAAAGATAAGTTAGGGTTAAGGAAAAACAAATCAGAAGAACTTCAGATTCCTTGCCAGGTTCCTAATACTTGGGAGTATTTTTCCAGGAACA
AGAACGTCTTTAAAGAGATAAGTGAGAAGATGAAAGGAAAAGAAGTGGAACAGGCAAACTCTCCACTATTAGGTTCTAAAAATTCTACAGATGCAAACAAGCGAACAAATATCAACCATGGTCCTGTCTGCATTACTTATTCTGAAAATGTTGAACCTGGTCAACAGGTTGTTGTTGAACGAAAAGATGACAAAACAATT
TCCAAAGTAGTAGAACCATTGACAGTTCAAACAATGAGATTTAGAATTCCAAACGAGGATGATTCTCATAGATCCTCAGATACAGGGAACGATGTACCACGTTTGAATGGCAATGGTCGTTCATGTTCTGAACACATGAATATAAACAAGATACCTGAAGTAAAAAAGTGCACTGAACTTTCCCCTAGCCAGTTCTTACT
AGAGAAAGAGGATGTGCTGCTCTCAGAACAACCCGGGAAGCTGAAGGCTAGTGAATCCAGGAGTAAAAGGAAGCCACAGAAGAAGCGACTAATAGCAGATATTATTGCTTCTAAACCCTCTGCTGATGAACTGGAGCAAAATATATGCATGCCTGAAAATAGTGAGCAATCCCCACGTCCGAAGGAAGATGATGCCAAAA
AGGCATCAAAACCTACAAGTGATACTAATGGGATATCTGAAGTTAATATTGATGCAGAAATAAATAATGTTATCATTAAGAAAGAACGCCCAGAAAAGCTTAAAGTCAGGAAGAAGCAGCCCTGCATAGGAATTGAATCCTTAGATGCTTTCTCAACATTTGTTGCAAAGGTATGTATTTCCTATTTTATTCTCTTGCAA
AAGTATGTGTTTCCATTTTTTATTTTCATCCACATGGATAGATCAGTAACTCACCATTTTATTTCTTTTACCTTTTTAATATAAATTAAACTTATCGTTTATCATATAATATTTATTAATGTGTAAATATCTTCGATTTTTATTGAATGTTTTAAGTTGTTGATTTGTCTAATATGTTATATAAATTAAACTTATCGTTT
A
>TRINITY_DN113752_c1_g1_i10 from sample A3 / Example unspliced isoform:GAAAAAGCAAGACTATTATTATTATTGTGACGTGTATGCATTCTATTGGACGTTATAACAATACTCTGTCGCTTCCGCAGGGAATTAGTCGGACTGCATCATTTTGCGTTTTATCTTATTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTG
CCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGG
ATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGAT
GATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGgtcagtgcccagacggctttggattcttgaatagctagggtttttacatttgcccccttctcaggttgtacggcctatgcctttccgttttttttttgacaattagggttttcccgcatattgtcatatttgctttgtgatttctacagctaat
agtacgagcagtccgccacatgtagagatttggaagaattaaccgagtgccttctgccattagagatgcaatttaccgagttttacgcttttctttaaatgtgtagatccctaaaattgtaaattgtattagcgttaatggtatttttataatttgttcagcactactttttttttttcaaaaaaattgttcagccttac
tttatagtagggaggatgacgcatcttacaagttattcaattgtattagcgttaatcgtatttctataatttgttcaatccctactttatggtagggagcatgacgcatcatataggttattttgcctaggcttcgttttgctaatgagaatgtaatcatttgatatccactcgaaccattgatgtcaattggcgtatgt
tgttaggactttccgcggatacattccgttatttgacgtaaatacatttgtcaattggcgtatgttgttaggactttccgcggatacattccgttatttgacgtaaatacattccgtcacagttacttctttttggcatccgtacgaaattacacgagcataactatttatagtatttgtagGGTTTGTATAATGAGCAG
GTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCCGAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGTTGACGACAAGATTTCTATCGAAAGCTCAACATGCGAGCGTTTCAGTATTCGGTAAGAGATTGAC
GTTTTTATCATTCTTTATTCGTCTTCTAAAATACTTGTAAACAATGTTCGACTGTGCCACCTTCTCACGTTCCAGTAAATTCCCATCCGACATCTTACGCAGAAGCTTAGAAAGACGAAGACGTGAAGTAAGACTTTTTGTTCGTTAATGACATCTTATTTTGTTCATTCTTTTTAGACGATCA
Intron 2 GTCAGTGCCC ... GTATTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.23 | 55.3 | 27 | 38.3 |
| A2 | 27.16 | 72 | 21 | 32.7 |
| A3 | 30.54 | 78.3 | 23 | 46.3 |
| A4 | 30.55 | 69.3 | 22 | 39 |
| A5 | 29.99 | 28 | 16 | 8 |
| A6 | 100 | 0 | 4 | 0 |
| A7 | 23.06 | 22.7 | 8 | 5.7 |
| A8 | 40 | 5 | 1 | 5.7 |
| A9 | 35.2 | 13.7 | 2 | 12.7 |
| A10 | 19.07 | 17.7 | 2 | 6.3 |
>TRINITY_DN97415_c0_g1_i13 from sample A4 / Example spliced isoformTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTGCCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGC
CAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGGATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAA
CCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTGCCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACG
GTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGGATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAA
TCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGGGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTG
AAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGGTTTGTATAATGAGCAGGTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCCGAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGA
TATGGTTGACGACAAGATTTCTATCGAAAGCTCAACATGCGAGCGTTTCAGTATTCGGTAAGAGATTGACGTTTTTATCATTCTTTATTCGTCTTCTAAAATACTTGTAAACAATGTTCGACTGTGCCACCTTCTCACGTTCCAGTAAATTCCCATCCGACATCTTACGCAGAAGCTTAGAAAGACGAAGACGTGAAGTA
AGACTTTTTGTTCGTTAATGACATCTTATTTTGTTCATTCTTTTTAGACGATCATTTGGTTTTCTAATCTAAAATTTTAGTTCCTAGATTTTTCCGAGGTCC
>TRINITY_DN97415_c0_g1_i5 from sample A4 / Example unspliced isoform:TTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTGCCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGC
CAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGGATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAA
CCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTGCCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACG
GTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGGATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAA
TCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGGGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTG
AAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTgtcagtgcccagacggctttggattcttgaatagctagggtttttacatttgcccccttctcaggttgtacggcctatgcctttccgtttttttttttgacaattagggttttcccgcatattgtcatatttgctttgtgatttctac
agctaatagtacgagcagtccgccacatgtagagatttggaagaattaaccgagtgccttctgccattagagatgcaatttaccgagttttacgcttttctttaaatgtgtagatccctaaaattgtaaattgtattagcgttaatggtatttttataatttgttcagcactactttttttttttcaaaaaaattgttca
gccttactttatagtagggaggatgacgcatcttacaagttattcaattgtattagcgttaatcgtatttctataatttgttcaatccctactttatggtagggagcatgacgcatcatataggttattttgcctaggcttcgttttgctaatgagaatgtaatcatttgatatccactcgaaccattgatgtcaattgg
cgtatgttgttaggactttccgcggatacattccgttatttgacgtaaatacatttgtcaattggcgtatgttgttaggactttccgcggatacattccgttatttgacgtaaatacattccgtcacagttacttctttttggtatccgtacgaaattacacgagcataactatttatagtatttgtagGGTTTGTATAA
TGAGCAGGTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCCGAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGTTGACGACAAGATTTCTATCGAAAGCTCAACATGCGAGCGTTTCAGTATTCG
Intron 3 GTCAGTGCCC ... GTATTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.39 | 40 | 27 | 25 |
| A2 | 27.27 | 60 | 21 | 24 |
| A3 | 29.28 | 64 | 24 | 29 |
| A4 | 29.34 | 59 | 20 | 29 |
| A5 | 29.73 | 26 | 16 | 6 |
| A6 | 100 | 0 | 4 | 0 |
| A7 | 20.83 | 19 | 7 | 3 |
| A8 | 40 | 3 | 1 | 3 |
| A9 | 36.36 | 7 | 2 | 6 |
| A10 | 18.92 | 15 | 2 | 5 |
>TRINITY_DN102963_c0_g1_i2 from sample A5 / Example spliced isoformGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTGCCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAAT
TTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGGATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTGCCGGTTTCTACTCAACCAAATCTATTTCGC
TCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGGATCGGACGCCCTTTGGTGCTCCGAAGTTGG
AATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAG
CGAGGGCGGATTTGGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGGGTTTGTATAATGA
GCAGGTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCCGAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGTTGACGACAAGATTTCTATCGAAAGCTCAACATGCGAGCGTTTCAGTATTCGAGGTTATGT
TGAAACAATACGTACGCTGGATAGAAACACTTGCTGGCCATTTCCTCAGCACTTACTGCAAACTAGATTGAAGGAAGCAGGCAATCTGGCTCTGCCTCCTCTAGAAATTCCTAGCTACAGATGGTGGAATTGTGAAAGCTGTTTAGCGGACATCATAACTTCTGCTGAGAGCCCAATTGAGAAAGAGTATTTAACGTACT
CAGATGCTTCTATGCAGGCCTGTGATGGTAACTTTGATCGTGGATGCCCGATGCTCTTGGCTACTTCCAATGTTGATATTCAGGAGAAACAAAAGGAAAATATGCTAGATGGCACAGAAATAGTAGAGAGTAGTAATGTTGATTTAATGCCAGGGGACGCTGTAGGCTCTTTTGCATATGAAACTGACAGAGAGAAGAAA
TATGGGGTAGTCACAGATTGTAAAGGAGAATATGGAAGAACTGAAAGTATTGTTCCAATGCAGCTAGAAAATGACAAATCTGAAATTATAGATTTGAAAGAGAAGAAAAGTGGAATCCCTCACTGTGTACCAAATTCTAAAATCTCCGAGGAAACCATCAATTTAATCGATAGTGACGAGAAAGTAGAATGTCCAGAGAT
GGGTCAGACGGTAGTGGAAACAATGCCATTCATGCTAGTGACTAAAACGAAAGATAAGTTAGGGTTAAGGAAAAACAAATCAGAAGAACTTCAGATTCCTTGCCAGGTTCCTAATACTTGGGAGTATTTTTCCAGGAACAAGAACGTCTTTAAAGAGATAAGTGAGAAGATGAAAGGAAAAGAAGTGGAACAGGCAAACT
CTCCACTATTAGGTTCTAAAAATTCTACAGATGCAAACAAGCGAACAAATATCAACCATGGTCCTGTCTGCATTACTTATTCTGAAAATGTTGAACCTGGTCAACAGGTTGTTGTTGAACGAAAAGATGACAAAACAATTTCCAAAGTAGTAGAACCATTGACAGTTCAAACAATGAGATTTAGAATTCCAAACGAGGAT
GATTCTCATAGATCCTCAGATACAGGGAACGATGTACCACGTTTGAATGGCAATGGTCGTTCATGTTCTGAACACATGAATATAAACAAGATACCTGAAGTAAAAAAGTGCACTGAACTTTCCCCTAGCCAGTTCTTACTAGAGAAAGAGGATGTGCTGCTCTCAGAACAACCCGGGAAGCTGAAGGCTAGTGAATCCAG
GAGTAAAAGGAAGCCACAGAAGAAGCGACTAATAGCAGATATTATTGCTTCTAAACCCTCTGCTGATGAACTGGAGCAAAATATATGCATGCCTGAAAATAGTGAGCAATCCCCACGTCCGAAGGAAGATGATGCCAAAAAGGCATCAAAACCTACAAGTGATACTAATGGGATATCTGAAGTTAATATTGATGCAGAAA
TAAATAATGTTATCATTAAGAAAGAACGCCCAGAAAAGCTTAAAGTCAGGAAGAAGCAGCCCTGCATAGGAATTGAATCCTTAGATGCTTTCTCAACATTTGTTGCAAAG
>TRINITY_DN102963_c0_g1_i1 from sample A5 / Example unspliced isoform:GAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTGCCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAAT
TTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGGATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTGCCGGTTTCTACTCAACCAAATCTATTTCGC
TCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGGATCGGACGCCCTTTGGTGCTCCGAAGTTGG
AATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAG
CGAGGGCGGATTTGGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGgtcagtgcccagac
ggctttggattcttgaatagctagggtttttacatttgcccccttctcaggttgtacggcctatgcctttccgttttttttttgacaattagggttttcccgcatattgtcatatttgctttgtgatttctacagctaatagtacgagcagtccgccacatgtagagatttggaagaattaaccgagtgccttctgccat
tagagatgcaatttaccgagttttacgcttttctttaaatgtgtagatccctaaaattgtaaattgtattagcgttaatggtatttttataatttgttcagcactactttttttttttcaaaaaaattgttcagccttactttatagtagggaggatgacgcatcttacaagttattcaattgtattagcgttaatcgta
tttctataatttgttcaatccctactttatggtagggagcatgacgcatcatataggttattttgcctaggcttcgttttgctaatgagaatgtaatcatttgatatccactcgaaccattgatgtcaattggcgtatgttgttaggactttccgcggatacattccgttatttgacgtaaatacatttgtcaattggcg
tatgttgttaggcgactttccgcggatacattccgttatttgacgtaaatacattccgtcacagttacttccttttggcatccgtacgaaattacacgagcataattatttatagtatttgtagGGTTTGTATAATGAGCAGGTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCCGAGGTGGT
AGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGTTGACGACAAGATTTCTATCGAAAGCTCAACATGCGAGCGTTTCAGTATTCGAGGTTATGTTGAAACAATACGTACGCTGGATAGAAACACTTGCTGGCCATTTCCTCAGCACTTACTGCAAA
CTAGATTGAAGGAAGCAGGCAATCTGGCTCTGCCTCCTCTAGAAATTCCTAGCTACAGATGGTGGAATTGTGAAAGCTGTTTAGCGGACATCATAACTTCTGCTGAGAGCCCAATTGAGAAAGAGTATTTAACGTACTCAGATGCTTCTATGCAGGCCTGTGATGGTAACTTTGATCGTGGATGCCCGATGCTCTTGGCT
ACTTCCAATGTTGATATTCAGGAGAAACAAAAGGAAAATATGCTAGATGGCACAGAAATAGTAGAGAGTAGTAATGTTGATTTAATGCCAGGGGACGCTGTAGGCTCTTTTGCATATGAAACTGACAGAGAGAAGAAATATGGGGTAGTCACAGATTGTAAAGGAGAATATGGAAGAACTGAAAGTATTGTTCCAATGCA
GCTAGAAAATGACAAATCTGAAATTATAGATTTGAAAGAGAAGAAAAGTGGAATCCCTCACTGTGTACCAAATTCTAAAATCTCCGAGGAAACCATCAATTTAATCGATAGTGACGAGAAAGTAGAATGTCCAGAGATGGGTCAGACGGTAGTGGAAACAATGCCATTCATGCTAGTGACTAAAACGAAAGATAAGTTAG
GGTTAAGGAAAAACAAATCAGAAGAACTTCAGATTCCTTGCCAGGTTCCTAATACTTGGGAGTATTTTTCCAGGAACAAGAACGTCTTTAAAGAGATAAGTGAGAAGATGAAAGGAAAAGAAGTGGAACAGGCAAACTCTCCACTATTAGGTTCTAAAAATTCTACAGATGCAAACAAGCGAACAAATATCAACCATGGT
CCTGTCTGCATTACTTATTCTGAAAATGTTGAACCTGGTCAACAGGTTGTTGTTGAACGAAAAGATGACAAAACAATTTCCAAAGTAGTAGAACCATTGACAGTTCAAACAATGAGATTTAGAATTCCAAACGAGGATGATTCTCATAGATCCTCAGATACAGGGAACGATGTACCACGTTTGAATGGCAATGGTCGTTC
ATGTTCTGAACACATGAATATAAACAAGATACCTGAAGTAAAAAAGTGCACTGAACTTTCCCCTAGCCAGTTCTTACTAGAGAAAGAGGATGTGCTGCTCTCAGAACAACCCGGGAAGCTGAAGGCTAGTGAATCCAGGAGTAAAAGGAAGCCACAGAAGAAGCGACTAATAGCAGATATTATTGCTTCTAAACCCTCTG
CTGATGAACTGGAGCAAAATATATGCATGCCTGAAAATAGTGAGCAATCCCCACGTCCGAAGGAAGATGATGCCAAAAAGGCATCAAAACCTACAAGTGATACTAATGGGATATCTGAAGTTAATATTGATGCAGAAATAAATAATGTTATCATTAAGAAAGAACGCCCAGAAAAGCTTAAAGTCAGGAAGAAGCAGCCC
TGCATAGGAATTGAATCCTTAGATGCTTTCTCAACATTTGTTGCAAAG
Intron 4 GTCAGTGCCC ... TAATGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.34 | 73 | 27 | 60 |
| A2 | 29.26 | 81 | 20 | 47 |
| A3 | 32.09 | 91 | 22 | 64 |
| A4 | 31.03 | 80 | 19 | 53 |
| A5 | 31.76 | 29 | 14 | 13 |
| A6 | 100 | 0 | 4 | 0 |
| A7 | 26.47 | 25 | 6 | 12 |
| A8 | 33.33 | 6 | 1 | 5 |
| A9 | 34.55 | 18 | 2 | 17 |
| A10 | 26.76 | 26 | 2 | 17 |
>TRINITY_DN113752_c1_g1_i12 from sample A3 / Example spliced isoformGAAAAAGCAAGACTATTATTATTATTGTGACGTGTATGCATTCTATTGGACGTTATAACAATACTCTGTCGCTTCCGCAGGGAATTAGTCGGACTGCATCATTTTGCGTTTTATCTTATTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTG
CCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGG
ATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGAT
GATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGGTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCCGAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGTTGACGACAAGATTTCTAT
CGAAAGCTCAACATGCGAGCGTTTCAGTATTCGAGGTTATGTTGAAACAATACGTACGCTGGATAGAAACACTTGCTGGCCATTTCCTCAGCACTTACTGCAAACTAGATTGAAGGAAGCAGGCAATCTGGCTCTGCCTCCTCTAGAAATTCCTAGCTACAGATGGTGGAATTGTGAAAGCTGTTTAGCGGACATCATAA
CTTCTGCTGAGAGCCCAATTGAGAAAGAGTATTTAACGTACTCAGATGCTTCTATGCAGGCCTGTGATGGTAACTTTGATCGTGGATGCCCGATGCTCTTGGCTACTTCCAATGTTGATATTCAGGAGAAACAAAAGGAAAATATGCTAGATGGCACAGAAATAGTAGAGAGTAGTAATGTTGATTTAATGCCAGGGGAC
GCTGTAGGCTCTTTTGCATATGAAACTGACAGAGAGAAGAAATATGGGGTAGTCACAGATTGTAAAGGAGAATATGGAAGAACTGAAAGTATTGTTCCAATGCAGCTAGAAAATGACAAATCTGAAATTATAGATTTGAAAGAGAAGAAAAGTGGAATCCCTCACTGTGTACCAAATTCTAAAATCTCCGAGGAAACCAT
CAATTTAATCGATAGTGACGAGAAAGTAGAATGTCCAGAGATGGGTCAGACGGTAGTGGAAACAATGCCATTCATGCTAGTGACTAAAACGAAAGATAAGTTAGGGTTAAGGAAAAACAAATCAGAAGAACTTCAGATTCCTTGCCAGGTTCCTAATACTTGGGAGTATTTTTCCAGGAACAAGAACGTCTTTAAAGAGA
TAAGTGAGAAGATGAAAGGAAAAGAAGTGGAACAGGCAAACTCTCCACTATTAGGTTCTAAAAATTCTACAGATGCAAACAAGCGAACAAATATCAACCATGGTCCTGTCTGCATTACTTATTCTGAAAATGTTGAACCTGGTCAACAGGTTGTTGTTGAACGAAAAGATGACAAAACAATTTCCAAAGTAGTAGAACCA
TTGACAGTTCAAACAATGAGATTTAGAATTCCAAACGAGGATGATTCTCATAGATCCTCAGATACAGGGAACGATGTACCACGTTTGAATGGCAATGGTCGTTCATGTTCTGAACACATGAATATAAACAAGATACCTGAAGTAAAAAAGTGCACTGAACTTTCCCCTAGCCAGTTCTTACTAGAGAAAGAGGATGTGCT
GCTCTCAGAACAACCCGGGAAGCTGAAGGCTAGTGAATCCAGGAGTAAAAGGAAGCCACAGAAGAAGCGACTAATAGCAGATATTATTGCTTCTAAACCCTCTGCTGATGAACTGGAGCAAAATATATGCATGCCTGAAAATAGTGAGCAATCCCCACGTCCGAAGGAAGATGATGCCAAAAAGGCATCAAAACCTACAA
GTGATACTAATGGGATATCTGAAGTTAATATTGATGCAGAAATAAATAATGTTATCATTAAGAAAGAACGCCCAGAAAAGCTTAAAGTCAGGAAGAAGCAGCCCTGCATAGGAATTGAATCCTTAGATGCTTTCTCAACATTTGTTGCAAAGAATTCCTCAACTTCAAGCTCATCTCAAGCTGTCACCAATGCTCCTCAA
ATGCCCAAAGGCGCCTCACTTTTTGTGTCAGCATCAAGAGACAAGTCACCTCAGTGCAATTTCCTTAACCCTGAACATCGGCAAACTGGAGAGAAGCTTTCTGGAATGGAAGATGAAATACCTATGGATATTGTTGAGCTAATGGCTAAAAATCAACATGAGCGAGGTCTATCAGACCTCAAATATTTTCATGAATGCCA
TAACCTCCAGAAAGATAGAAGAAAATTGAAAATGAAAGAAACAGATCTGAGTCAGGTCAATAAACATGTAGAGGGAGGAACAGGCCTCAAGCAGAACACTGCAACACCTAAGAGTAAAGCAAAGCCCAAACAAACTGGCAAATCAAGCCAGCAGGCCACTTTAAGAAATTGCTGCCAAAGTGATTTACCAGTAGACTATG
GCCAAATCTATGATTCCAAGGGTGCAAGAGATAATTTATTCATTTCAGACAAGGAAGGGACCACATCTGGCTCATGTAAAGGTGATCTGGCAATGTTGGAATCAACCCGGTGCTTCAATCCACGGGGGAAATATTCTCCAGATTTTGTTGCACCAGTTTTGGATGAAACAATTTCTGCCCGCAACCTGGCAGCCCCCGTT
GATGGCACCAAATCACATGTTTCTATTACTCATTGTGATCACTATGGAACTTTCTCTAGAAACAAAATGTTGGCAGATTCTATGCAGTTGCAGGGAGTCTCCACTTATTGTGGCCATATTACAATGCAAAATCTTCTCAGGGGAGGCACCTCTGCATCATCAGACTTCACAAGTTCAGGGCTTCCAAGTGTTCAGAATAA
ATCCGATTCCTCCTTTAGTTGTAATGGGTACTCACATCAAAACCTGACAAGGACTGACAGTCCACACAACTTGACCAGTGAAAGATCAGATTTTGGAAATTCTGGCAAAAGATTTGATATTCTATCTGAGAGCCACAAAGGAAATGGTATTCCCAATCTCTCAGTAAGAACAGATGGAAGTTCAGGTCCTCTTTATTTCA
ACGGACAAAGTAACTCAGTTTCATTGCAGCAGGTAAATGCCCAAGCAAGACAACCATCTGGGAAGAAACACTGTTTTACCTCCACCCCTGTGCTGAGGCGAATGGGGCAATGTGTATCAGTTCCAGCAAAGTGCGGGAATGAAGAAAGCATTGTAACAGACAATGGACACAGCATAAATTTCTCCAATCTACCACAGGCC
TCTTCACAAAAGCATGTCAATTGCTTTCATTCATCAGGGGTAATGGAGAGAAGTCAAAGGGAAACATTTTCTAGCACTGAAAGAGTGTTTAAGGGTTCAGAAGCCATTCAAGATAGCATGCGTATGAATGAACAAATCTTGAATTCAACAAAACCAATACCTCCTGTTCCAAAGTTCAGGTCTTTTGGGCATTATGCGTC
AAATGGGCACTCTGGAATTTTCACCCCTTCTTCCGCAGTCCCTGGTAATGCTGATGTTGCCCTAGAATCCTCTTTGTTGAGGACCAAACCTCCCTTCCAAGGTACACTATTGCCTGGCAAAAATCTGAAGAAGGGATTGCAATGTACAAACGATTACAATGGCAATCTAAAAAATTTCTCTACTGCCCCTCCTGCTTGTC
AAAGTTCGAAGGTTGTAAAAGGCTTAAGTTCTACCAAAGGCTTAAGATCATATAGGCCGACACCTACAGCTATGCATCTAAACAGAAACCACGGATCTGCTCCTGGTATTTACCTTGAGAGTAGACACCATTGTTTCCAATCCCCGTTTGTGTTGGAATCTAATCCCCATCAAAACCTAACAAGGGAGGCAGAGAAACCA
AAGTCACTGAAACTCAACAAAGGAAATGAGGAATCTGCGGTCTCTGGCAAAAACGCTTTTAATGTAGAAATATGCACACTGAATCAGAACCCAGCTGAAATCAATATAGATGACGAAGAGGACGGATATTGTTTTGGTTATGACCATTTTAGTTTATCTCATAGAGATTTTGCACATAATGAAAGAAAGAGAGAGATGAC
AATCCCACAAGGGCAAAAACGGCGGAGAACCTTAAAGAGAAAGCAAAGGCAAGAATTTCTCAGTAAGAAGGATGGTTATGTTGGTGATCCTGCCAAAATAAATGTGGACAATCTAAATTCTTTGAGGCAGGAATTGACTTCGATGAAAGAACTGGTTGGAAACACCACTTAAAAGGTTGAAATATGGAAACATTATTTTA
AAGTTTGTTTCCAAAGCATAGAAAGACTTGTGATTGTGCTAATCATGCACTACATCCAGCTGTGGATGATGTCAATAGTCCCACTTGATTCTATCTTATGATTTATTCTCTTCTATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGG
CAT
>TRINITY_DN113752_c1_g1_i1 from sample A3 / Example unspliced isoform:GAAAAAGCAAGACTATTATTATTATTGTGACGTGTATGCATTCTATTGGACGTTATAACAATACTCTGTCGCTTCCGCAGGGAATTAGTCGGACTGCATCATTTTGCGTTTTATCTTATTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTG
CCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGG
ATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGAT
GATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGgtcagtgcccagacggctttggattcttgaatagctagggtttttacatttgcccccttctcaggttgtacggcctatgcctttccgttttttttttgacaattagggttttcccgcatattgtcatatttgctttgtgatttctacagctaat
agtacgagcagtccgccacatgtagagatttggaagaattaaccgagtgccttctgccattagagatgcaatttaccgagttttacgcttttctttaaatgtgtagatccctaaaattgtaaattgtattagcgttaatggtatttttataatttgttcagcactactttttttttttcaaaaaaattgttcagccttac
tttatagtagggaggatgacgcatcttacaagttattcaattgtattagcgttaatcgtatttctataatttgttcaatccctactttatggtagggagcatgacgcatcatataggttattttgcctaggcttcgttttgctaatgagaatgtaatcatttgatatccactcgaaccattgatgtcaattggcgtatgt
tgttaggactttccgcggatacattccgttatttgacgtaaatacatttgtcaattggcgtatgttgttaggactttccgcggatacattccgttatttgacgtaaatacattccgtcacagttacttctttttggcatccgtacgaaattacacgagcataactatttatagtatttgtagggtttgtataatgagcag
GTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCCGAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGTTGACGACAAGATTTCTATCGAAAGCTCAACATGCGAGCGTTTCAGTATTCGAGGTTATGTTGAA
ACAATACGTACGCTGGATAGAAACACTTGCTGGCCATTTCCTCAGCACTTACTGCAAACTAGATTGAAGGAAGCAGGCAATCTGGCTCTGCCTCCTCTAGAAATTCCTAGCTACAGATGGTGGAATTGTGAAAGCTGTTTAGCGGACATCATAACTTCTGCTGAGAGCCCAATTGAGAAAGAGTATTTAACGTACTCAGA
TGCTTCTATGCAGGCCTGTGATGGTAACTTTGATCGTGGATGCCCGATGCTCTTGGCTACTTCCAATGTTGATATTCAGGAGAAACAAAAGGAAAATATGCTAGATGGCACAGAAATAGTAGAGAGTAGTAATGTTGATTTAATGCCAGGGGACGCTGTAGGCTCTTTTGCATATGAAACTGACAGAGAGAAGAAATATG
GGGTAGTCACAGATTGTAAAGGAGAATATGGAAGAACTGAAAGTATTGTTCCAATGCAGCTAGAAAATGACAAATCTGAAATTATAGATTTGAAAGAGAAGAAAAGTGGAATCCCTCACTGTGTACCAAATTCTAAAATCTCCGAGGAAACCATCAATTTAATCGATAGTGACGAGAAAGTAGAATGTCCAGAGATGGGT
CAGACGGTAGTGGAAACAATGCCATTCATGCTAGTGACTAAAACGAAAGATAAGTTAGGGTTAAGGAAAAACAAATCAGAAGAACTTCAGATTCCTTGCCAGGTTCCTAATACTTGGGAGTATTTTTCCAGGAACAAGAACGTCTTTAAAGAGATAAGTGAGAAGATGAAAGGAAAAGAAGTGGAACAGGCAAACTCTCC
ACTATTAGGTTCTAAAAATTCTACAGATGCAAACAAGCGAACAAATATCAACCATGGTCCTGTCTGCATTACTTATTCTGAAAATGTTGAACCTGGTCAACAGGTTGTTGTTGAACGAAAAGATGACAAAACAATTTCCAAAGTAGTAGAACCATTGACAGTTCAAACAATGAGATTTAGAATTCCAAACGAGGATGATT
CTCATAGATCCTCAGATACAGGGAACGATGTACCACGTTTGAATGGCAATGGTCGTTCATGTTCTGAACACATGAATATAAACAAGATACCTGAAGTAAAAAAGTGCACTGAACTTTCCCCTAGCCAGTTCTTACTAGAGAAAGAGGATGTGCTGCTCTCAGAACAACCCGGGAAGCTGAAGGCTAGTGAATCCAGGAGT
AAAAGGAAGCCACAGAAGAAGCGACTAATAGCAGATATTATTGCTTCTAAACCCTCTGCTGATGAACTGGAGCAAAATATATGCATGCCTGAAAATAGTGAGCAATCCCCACGTCCGAAGGAAGATGATGCCAAAAAGGCATCAAAACCTACAAGTGATACTAATGGGATATCTGAAGTTAATATTGATGCAGAAATAAA
TAATGTTATCATTAAGAAAGAACGCCCAGAAAAGCTTAAAGTCAGGAAGAAGCAGCCCTGCATAGGAATTGAATCCTTAGATGCTTTCTCAACATTTGTTGCAAAGAATTCCTCAACTTCAAGCTCATCTCAAGCTGTCACCAATGCTCCTCAAATGCCCAAAGGCGCCTCACTTTTTGTGTCAGCATCAAGAGACAAGT
CACCTCAGTGCAATTTCCTTAACCCTGAACATCGGCAAACTGGAGAGAAGCTTTCTGGAATGGAAGATGAAATACCTATGGATATTGTTGAGCTAATGGCTAAAAATCAACATGAGCGAGGTCTATCAGACCTCAAATATTTTCATGAATGCCATAACCTCCAGAAAGATAGAAGAAAATTGAAAATGAAAGAAACAGAT
CTGAGTCAGGTCAATAAACATGTAGAGGGAGGAACAGGCCTCAAGCAGAACACTGCAACACCTAAGAGTAAAGCAAAGCCCAAACAAACTGGCAAATCAAGCCAGCAGGCCACTTTAAGAAATTGCTGCCAAAGTGATTTACCAGTAGACTATGGCCAAATCTATGATTCCAAGGGTGCAAGAGATAATTTATTCATTTC
AGACAAGGAAGGGACCACATCTGGCTCATGTAAAGGTGATCTGGCAATGTTGGAATCAACCCGGTGCTTCAATCCACGGGGGAAATATTCTCCAGATTTTGTTGCACCAGTTTTGGATGAAACAATTTCTGCCCGCAACCTGGCAGCCCCCGTTGATGGCACCAAATCACATGTTTCTATTACTCATTGTGATCACTATG
GAACTTTCTCTAGAAACAAAATGTTGGCAGATTCTATGCAGTTGCAGGGAGTCTCCACTTATTGTGGCCATATTACAATGCAAAATCTTCTCAGGGGAGGCACCTCTGCATCATCAGACTTCACAAGTTCAGGGCTTCCAAGTGTTCAGAATAAATCCGATTCCTCCTTTAGTTGTAATGGGTACTCACATCAAAACCTG
ACAAGGACTGACAGTCCACACAACTTGACCAGTGAAAGATCAGATTTTGGAAATTCTGGCAAAAGATTTGATATTCTATCTGAGAGCCACAAAGGAAATGGTATTCCCAATCTCTCAGTAAGAACAGATGGAAGTTCAGGTCCTCTTTATTTCAACGGACAAAGTAACTCAGTTTCATTGCAGCAGGTAAATGCCCAAGC
AAGACAACCATCTGGGAAGAAACACTGTTTTACCTCCACCCCTGTGCTGAGGCGAATGGGGCAATGTGTATCAGTTCCAGCAAAGTGCGGGAATGAAGAAAGCATTGTAACAGACAATGGACACAGCATAAATTTCTCCAATCTACCACAGGCCTCTTCACAAAAGCATGTCAATTGCTTTCATTCATCAGGGGTAATGG
AGAGAAGTCAAAGGGAAACATTTTCTAGCACTGAAAGAGTGTTTAAGGGTTCAGAAGCCATTCAAGATAGCATGCGTATGAATGAACAAATCTTGAATTCAACAAAACCAATACCTCCTGTTCCAAAGTTCAGGTCTTTTGGGCATTATGCGTCAAATGGGCACTCTGGAATTTTCACCCCTTCTTCCGCAGTCCCTGGT
AATGCTGATGTTGCCCTAGAATCCTCTTTGTTGAGGACCAAACCTCCCTTCCAAGGTACACTATTGCCTGGCAAAAATCTGAAGAAGGGATTGCAATGTACAAACGATTACAATGGCAATCTAAAAAATTTCTCTACTGCCCCTCCTGCTTGTCAAAGTTCGAAGGTTGTAAAAGGCTTAAGTTCTACCAAAGGCTTAAG
ATCATATAGGCCGACACCTACAGCTATGCATCTAAACAGAAACCACGGATCTGCTCCTGGTATTTACCTTGAGAGTAGACACCATTGTTTCCAATCCCCGTTTGTGTTGGAATCTAATCCCCATCAAAACCTAACAAGGGAGGCAGAGAAACCAAAGTCACTGAAACTCAACAAAGGAAATGAGGAATCTGCGGTCTCTG
GCAAAAACGCTTTTAATGTAGAAATATGCACACTGAATCAGAACCCAGCTGAAATCAATATAGATGACGAAGAGGACGGATATTGTTTTGGTTATGACCATTTTAGTTTATCTCATAGAGATTTTGCACATAATGAAAGAAAGAGAGAGATGACAATCCCACAAGGGCAAAAACGGCGGAGAACCTTAAAGAGAAAGCAA
AGGCAAGAATTTCTCAGTAAGAAGGATGGTTATGTTGGTGATCCTGCCAAAATAAATGTGGACAATCTAAATTCTTTGAGGCAGGAATTGACTTCGATGAAAGAACTGGTTGGAAACACCACTTAAAAGGTTGAAATATGGAAACATTATTTTAAAGTTTGTTTCCAAAGCATAGAAAGACTTGTGATTGTGCTAATCAT
GCACTACATCCAGCTGTGGATGATGTCAATAGTCCCACTTGATTCTATCTTATGATTTATTCTCTTCTATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGGCAT
Intron 5 GTAAGAGATT ... AATTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.52 | 55 | 30 | 23 |
| A2 | 27.39 | 57 | 24 | 19 |
| A3 | 27.84 | 70 | 32 | 22 |
| A4 | 34.09 | 29 | 18 | 12 |
| A5 | 32.47 | 26 | 23 | 2 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 25 | 18 | 8 | 4 |
| A8 | 33.33 | 9 | 5 | 4 |
| A9 | 23.81 | 16 | 5 | 5 |
| A10 | 21.35 | 35 | 13 | 6 |
>TRINITY_DN122918_c0_g2_i6 from sample A1 / Example spliced isoformCTTATTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTGCCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATT
TTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGGATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATT
GCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGGGTTTGTATAATGAGCAGGTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCC
GAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGTTGACGACAAGATTTCTATCGAAAGCTCAACATGCGAGCGTTTCAGTATTCGAGGTTATGTTGAAACAATACGTACGCTGGATAGAAACACTTGCTGGCCATTTCCTCAGCACTT
ACTGCAAACTAGATTGAAGGAAGCAGGCAATCTGGCTCTGCCTCCTCTAGAAATTCCTAGCTACAGATGGTGGAATTGTGAAAGCTGTTTAGCGGACATCATAACTTCTGCTGAGAGCCCAATTGAGAAAGAGTATTTAACGTACTCAGATGCTTCTATGCAGGCCTGTGATGGTAACTTTGATCGTGGATGCCCGATGC
TCTTGGCTACTTCCAATGTTGATATTCAGGAGAAACAAAAGGAAAATATGCTAGATGGCACAGAAATAGTAGAGAGTAGTAATGTTGATTTAATGCCAGGGGACGCTGTAGGCTCTTTTGCATATGAAACTGACAGAGAGAAGAAATATGGGGTAGTCACAGATTGTAAAGGAGAATATGGAAGAACTGAAAGTATTGTT
CCAATGCAGCTAGAAAATGACAAATCTGAAATTATAGATTTGAAAGAGAAGAAAAGTGGAATCCCTCACTGTGTACCAAATTCTAAAATCTCCGAGGAAACCATCAATTTAATCGATAGTGACGAGAAAGTAGAATGTCCAGAGATGGGTCAGACGGTAGTGGAAACAATGCCATTCATGCTAGTGACTAAAACGAAAGA
TAAGTTAGGGTTAAGGAAAAACAAATCAGAAGAACTTCAGATTCCTTGCCAGGTTCCTAATACTTGGGAGTATTTTTCCAGGAACAAGAACGTCTTTAAAGAGATAAGTGAGAAGATGAAAGGAAAAGAAGTGGAACAGGCAAACTCTCCACTATTAGGTTCTAAAAATTCTACAGATGCAAACAAGCGAACAAATATCA
ACCATGGTCCTGTCTGCATTACTTATTCTGAAAATGTTGAACCTGGTCAACAGGTTGTTGTTGAACGAAAAGATGACAAAACAATTTCCAAAGTAGTAGAACCATTGACAGTTCAAACAATGAGATTTAGAATTCCAAACGAGGATGATTCTCATAGATCCTCAGATACAGGGAACGATGTACCACGTTTGAATGGCAAT
GGTCGTTCATGTTCTGAACACATGAATATAAACAAGATACCTGAAGTAAAAAAGTGCACTGAACTTTCCCCTAGCCAGTTCTTACTAGAGAAAGAGGATGTGCTGCTCTCAGAACAACCCGGGAAGCTGAAGGCTAGTGAATCCAGGAGTAAAAGGAAGCCACAGAAGAAGCGACTAATAGCAGATATTATTGCTTCTAA
ACCCTCTGCTGATGAACTGGAGCAAAATATATGCATGCCTGAAAATAGTGAGCAATCCCCACGTCCGAAGGAAGATGATGCCAAAAAGGCATCAAAACCTACAAGTGATACTAATGGGATATCTGAAGTTAATATTGATGCAGAAATAAATAATGTTATCATTAAGAAAGAACGCCCAGAAAAGCTTAAAGTCAGGAAGA
AGCAGCCCTGCATAGGAATTGAATCCTTAGATGCTTTCTCAACATTTGTTGCAAAGGTATGTATTTCCTATTTTATTCTCTTGCAAAAGTATGTGTTTCCATTTTTTATTTTCATCCACATGGATAGATCAGTAACTCACCATTTAATTTCTTTTACCTTTTTAATATAAATTAAACTTATCGTTTATCATATAATATTT
ATTAATGTGTAAATATCTTCGATTTTTATTGAATGTTTTAAGTTGTTGATTTGTCTAATATGTTATATAAATTAAACTTATCGTTTATCATATAATATTTATTAATGTGTAAATATCTTCGATTTTTATTGAATTTTTAAGTTGTTGATGTGTCTACTATGTTGAGTTTTTTAGTTTCAACTTTATTTTTATTCATAATT
TCCAATATTTTCTTGGTATTTGTGATAAATTTATTTCTAAATCTTAAATGATATATTTTTCAAAAAG
>TRINITY_DN122918_c0_g2_i14 from sample A1 / Example unspliced isoform:CTTATTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTGCCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATT
TTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGGATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATT
GCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGGGTTTGTATAATGAGCAGGTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCC
GAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGTTGACGACAAGATTTCTATCGAAAGCTCAACATGCGAGCGTTTCAGTATTCGgtaagagattgacgtttttatcattctttattcgtcttctaaaatacttgtaaacaatgtttg
actgtgccaccttctcacgttccagtaaattcccatccgacatcttacgcagaagcttagaaagacgaagacgtgaagtaagactttttgttcgttaatgacatcttattttgttcattctttttagacgatcatttggttttctaatctaaaattttagttcctagatttttccgaggtccaatctagactacggatgt
atcgttttgaacttttcgtggattcattggacaccaacttaatctctttcaatttctttcacatttagacacgtgtataacacacatgttgcgaatttaattcattttattggatgcgcacaagtaaggaagttaagaattatttagaatagacataaattgtttcacatatgttgacgatcaccatgtgaccgtgtgtt
tcgtaagatgctagattggcttataagatgctctccatctttaactgtataatactttagctaagataataataggtcagtttaagggttcttttaatattcatcaatttaatctgctttctttttacccggtataataccatacttttcagttaacatacttataattcagttgcttactttttaccctttataatact
tacttttccagttcagttagcataccaatagtcagttactgtcccatttttttttaaattccagatattcaatctcttactttctatctgtataacaccttttccactttagttatctttaagaaatttcagcgattcaatctcttactttctacccactttagtaaggatagtaataggtcagttaatgtttttattta
agatttcagcaattgaatctgcttactttgtatcctgtataatacctacctagtatagtaataggtcaatttaatgggctttctaagattcagcaaattcaacctgcttattttttattattttaattatgcagAGGTTATGTTGAAACAATACGTACGCTGGATAGAAACACTTGCTGGCCATTTCCTCAGCACTTACT
GCAAACTAGATTGAAGGAAGCAGGCAATCTGGCTCTGCCTCCTCTAGAAATTCCTAGCTACAGATGGTGGAATTGTGAAAGCTGTTTAGCGGACATCATAACTTCTGCTGAGAGCCCAATTGAGAAAGAGTATTTAACGTACTCAGATGCTTCTATGCAGGCCTGTGATGGTAACTTTGATCGTGGATGCCCGATGCTCT
TGGCTACTTCCAATGTTGATATTCAGGAGAAACAAAAGGAAAATATGCTAGATGGCACAGAAATAGTAGAGAGTAGTAATGTTGATTTAATGCCAGGGGACGCTGTAGGCTCTTTTGCATATGAAACTGACAGAGAGAAGAAATATGGGGTAGTCACAGATTGTAAAGGAGAATATGGAAGAACTGAAAGTATTGTTCCA
ATGCAGCTAGAAAATGACAAATCTGAAATTATAGATTTGAAAGAGAAGAAAAGTGGAATCCCTCACTGTGTACCAAATTCTAAAATCTCCGAGGAAACCATCAATTTAATCGATAGTGACGAGAAAGTAGAATGTCCAGAGATGGGTCAGACGGTAGTGGAAACAATGCCATTCATGCTAGTGACTAAAACGAAAGATAA
GTTAGGGTTAAGGAAAAACAAATCAGAAGAACTTCAGATTCCTTGCCAGGTTCCTAATACTTGGGAGTATTTTTCCAGGAACAAGAACGTCTTTAAAGAGATAAGTGAGAAGATGAAAGGAAAAGAAGTGGAACAGGCAAACTCTCCACTATTAGGTTCTAAAAATTCTACAGATGCAAACAAGCGAACAAATATCAACC
ATGGTCCTGTCTGCATTACTTATTCTGAAAATGTTGAACCTGGTCAACAGGTTGTTGTTGAACGAAAAGATGACAAAACAATTTCCAAAGTAGTAGAACCATTGACAGTTCAAACAATGAGATTTAGAATTCCAAACGAGGATGATTCTCATAGATCCTCAGATACAGGGAACGATGTACCACGTTTGAATGGCAATGGT
CGTTCATGTTCTGAACACATGAATATAAACAAGATACCTGAAGTAAAAAAGTGCACTGAACTTTCCCCTAGCCAGTTCTTACTAGAGAAAGAGGATGTGCTGCTCTCAGAACAACCCGGGAAGCTGAAGGCTAGTGAATCCAGGAGTAAAAGGAAGCCACAGAAGAAGCGACTAATAGCAGATATTATTGCTTCTAAACC
CTCTGCTGATGAACTGGAGCAAAATATATGCATGCCTGAAAATAGTGAGCAATCCCCACGTCCGAAGGAAGATGATGCCAAAAAGGCATCAAAACCTACAAGTGATACTAATGGGATATCTGAAGTTAATATTGATGCAGAAATAAATAATGTTATCATTAAGAAAGAACGCCCAGAAAAGCTTAAAGTCAGGAAGAAGC
AGCCCTGCATAGGAATTGAATCCTTAGATGCTTTCTCAACATTTGTTGCAAAGAATTCCTCAACTTCAAGCTCATCTCAAGCTGTCACCAATGCTCCTCAAATGCCCAAAGGCGCCTCACTTTTTGTGTCAGCATCAAGAGACAAGTCACCTCAGTGCAATTTCCTTAACCCTGAACATCGGCAAACTGGAGAGAAGCTT
TCTGGAATGGAAGATGAAATACCTATGGATATTGTTGAGCTAATGGCTAAAAATCAACATGAGCGAGGTCTATCAGACCTCAAATATTTTCATGAATGCCATAACCTCCAGAAAGATAGAAGAAAATTGAAAATGAAAGAAACAGATCTGAGTCAGGTCAATAAACATGTAGAGGGAGGAACAGGCCTCAAGCAGAACAC
TGCAACACCTAAGAGTAAAGCAAAGCCCAAACAAACTGGCAAATCAAGCCAGCAGGCCACTTTAAGAAATTGCTGCCAAAGTGATTTACTAGTAGACTATGGCCAAATCTATGATTCCAAGGGTGCAAGAGATAATTTATTCATTTCAGACAAGGAAGGGACCACATCTGGCTCATGTAAAGGTGATCTGGCAATGTTGG
AATCAACCCGGTGCTTCAATCCACGGGGGAAATATTCTCCAGATTTTGTTGCACCAGTTTTGGATGAAACAATTTCTGCCCGCAACCTGGCAGCCCCCGTTGATGGCACCAAATCACATGTTTCTATTACTCATTGTGATCACTATGGAACTTTCTCTAGAAACAAAATGTTGGCAGATTCTATGCAGTTGCAGGGAGTC
TCCACTTATTGTGGCCATATTACAATGCAAAATCTTCTCAGGGGAGGCACCTCTGCATCATCAGACTTCACAAGTTCAGGGCTTCCAAGTGTTCAGAATAAATCCGATTCCTCCTTTAGTTGTAATGGGTACTCACATCAAAACCTGACAAGGACTGACAGTCCACACAACTTGACCAGTGAAAGATCAGATTTTGGAAA
TTCTGGCAAAAGATTTGATATTCTATCTGAGAGCCACAAAGGAAATGGTATTCCCAATCTCTCAGTAAGAACAGATGGAAGTTCACGTCCTCTTTATTTCAACGGACAAAGTAACTCAGTTTCATTGCAGCAGGTAAATGCCCAAGCAAGACAACCATCTGGGAAGAAACACTGTTTTACCTCCACCCCTGTGCTGAGGC
GAATGGGGCAATGTGTATCAGTTCCAGCAAAGTGCGGGAATGAAGAAAGCATTGTAACAGACAATGGACACAGCATAAATTTCTCCAATCTACCACAGGCCTCTTCACAAAAGCATGTCAATTGCTTTCATTCATCAGGGGTAATGGAGAGAAGTCAAAGGGAAACATTTTCTAGCACTGAAAGAGTGTTTAAGGGTTCA
GAAGCCATTCAAGATAGCATGCGTATGAATGAACAAATCTTGAATTCAACAAAACCAATACCTCCTGTTCCAAAGTTCAGGTCTTTTGGGCATTATGCGTCAAATGGGCACTCTGGAATTTTCACCCCTTCTTCCGCAGTCCCTGGTAATGCTGATGTTGCCCTAGAATCCTCTTTGTTGAGGACCAAACCTCCCTTCCA
AGGTACACTATTGCCTGGCAAAAATCTGAAGAAGGGATTGCAATGTACAAACGATTACAATGGCAATCTAAAAAATTTCTCTACTGCCCCTCCTGCTTGTCAAAGTTCGAAGGTTGTAAAAGGCTTAAGTTCTACCAAAGGCTTAAGATCATATAGGCCGACACCTACAGCTATGCATCTAAACAGAAACCACGGATCTG
CTCCTGGTATTTACCTTGAGAGTAGACACCATTGTTTCCAATCCCCGTTTGTGTTGGAATCTAATCCCCATCAAAACCTAACAAGGGAGGCAGAGAAACCAAAGTCACTGAAACTCAACAAAGGAAATGAGGAATCTGCGGTCTCTGGCAAAAACGCTTTTAATGTAGAAATATGCACACTGAATCAGAACCCAGCTGAA
ATCAATATAGATGACGAAGAGGACGGATATTGTTTTGGTTATGACCATTTTAGTTTATCTCATAGAGATTTTGCACATAATGAAAGAAAGAGAGAGATGACAATCCCACAAGGGCAAAAACGGCGGAGAACCTTAAAGAGAAAGCAAAGGCAAGAATTTCTCAGTAAGAAGGATGGTTATGTTGGTGATCCTGCCAAAAT
AAATGTGGACAATCTAAATTCTTTGAGGCAGGAATTGACTTCGATGAAAGAACTGGTTGGAAACACCACTTAAAAGGTTGAAATATGGAAACATTATTTTAAAGTTTGTTTCCAAAGCATAGAAAGACTTGTGATTGTGCTAATCATGCACTACATCCAGCTGTGGATGATGTCAATAGTCCCACTTGATTCTATCTTAT
GATTTATTCTCTTCTATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGGCATCATTAATGACCAAATGACCAATTGGATGCTCCTGCAAGCCTGCGACCATAGAGACAGATTTTATTTTAAATAGAATATGGTTGTAGACAGTTTTAAAA
Intron 6 GTAAATCTAG ... TTTGGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.83 | 26 | 20 | 24 |
| A2 | 44.44 | 20 | 8 | 24 |
| A3 | 41.67 | 35 | 19 | 31 |
| A4 | 45.45 | 15 | 11 | 14 |
| A5 | 40 | 6 | 1 | 7 |
| A6 | 60 | 2 | 3 | 3 |
| A7 | 57.14 | 6 | 3 | 13 |
| A8 | 43.48 | 13 | 9 | 11 |
| A9 | 56.67 | 13 | 17 | 17 |
| A10 | 40 | 9 | 2 | 10 |
>TRINITY_DN113752_c1_g1_i15 from sample A3 / Example spliced isoformGAAAAAGCAAGACTATTATTATTATTGTGACGTGTATGCATTCTATTGGACGTTATAACAATACTCTGTCGCTTCCGCAGGGAATTAGTCGGACTGCATCATTTTGCGTTTTATCTTATTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTG
CCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGG
ATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGAT
GATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGGTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCCGAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGTTGACGACAAGATTTCTAT
CGAAAGCTCAACATGCGAGCGTTTCAGTATTCGAGGTTATGTTGAAACAATACGTACGCTGGATAGAAACACTTGCTGGCCATTTCCTCAGCACTTACTGCAAACTAGATTGAAGGAAGCAGGCAATCTGGCTCTGCCTCCTCTAGAAATTCCTAGCTACAGATGGTGGAATTGTGAAAGCTGTTTAGCGGACATCATAA
CTTCTGCTGAGAGCCCAATTGAGAAAGAGTATTTAACGTACTCAGATGCTTCTATGCAGGCCTGTGATGGTAACTTTGATCGTGGATGCCCGATGCTCTTGGCTACTTCCAATGTTGATATTCAGGAGAAACAAAAGGAAAATATGCTAGATGGCACAGAAATAGTAGAGAGTAGTAATGTTGATTTAATGCCAGGGGAC
GCTGTAGGCTCTTTTGCATATGAAACTGACAGAGAGAAGAAATATGGGGTAGTCACAGATTGTAAAGGAGAATATGGAAGAACTGAAAGTATTGTTCCAATGCAGCTAGAAAATGACAAATCTGAAATTATAGATTTGAAAGAGAAGAAAAGTGGAATCCCTCACTGTGTACCAAATTCTAAAATCTCCGAGGAAACCAT
CAATTTAATCGATAGTGACGAGAAAGTAGAATGTCCAGAGATGGGTCAGACGGTAGTGGAAACAATGCCATTCATGCTAGTGACTAAAACGAAAGATAAGTTAGGGTTAAGGAAAAACAAATCAGAAGAACTTCAGATTCCTTGCCAGGTTCCTAATACTTGGGAGTATTTTTCCAGGAACAAGAACGTCTTTAAAGAGA
TAAGTGAGAAGATGAAAGGAAAAGAAGTGGAACAGGCAAACTCTCCACTATTAGGTTCTAAAAATTCTACAGATGCAAACAAGCGAACAAATATCAACCATGGTCCTGTCTGCATTACTTATTCTGAAAATGTTGAACCTGGTCAACAGGTTGTTGTTGAACGAAAAGATGACAAAACAATTTCCAAAGTAGTAGAACCA
TTGACAGTTCAAACAATGAGATTTAGAATTCCAAACGAGGATGATTCTCATAGATCCTCAGATACAGGGAACGATGTACCACGTTTGAATGGCAATGGTCGTTCATGTTCTGAACACATGAATATAAACAAGATACCTGAAGTAAAAAAGTGCACTGAACTTTCCCCTAGCCAGTTCTTACTAGAGAAAGAGGATGTGCT
GCTCTCAGAACAACCCGGGAAGCTGAAGGCTAGTGAATCCAGGAGTAAAAGGAAGCCACAGAAGAAGCGACTAATAGCAGATATTATTGCTTCTAAACCCTCTGCTGATGAACTGGAGCAAAATATATGCATGCCTGAAAATAGTGAGCAATCCCCACGTCCGAAGGAAGATGATGCCAAAAAGGCATCAAAACCTACAA
GTGATACTAATGGGATATCTGAAGTTAATATTGATGCAGAAATAAATAATGTTATCATTAAGAAAGAACGCCCAGAAAAGCTTAAAGTCAGGAAGAAGCAGCCCTGCATAGGAATTGAATCCTTAGATGCTTTCTCAACATTTGTTGCAAAGTGATCAATGATAGATAGGTGAGATGATGCTCGATTGATTCATGGTCTA
TTATTTTCTCACAATTCGTGCATTCATGTCACAAGCCTATTCTGATGCATCTTCATCATGCAAGTCATATCTGGACTCTGTTGAGGATGGATAATTTAAATAAACTAATAATTCCTCAACTTCAAGCTCATCTCAAGCTGTCACCAATGCTCCTCAAATGCCCAAAGGCGCCTCACTTTTTGTGTCAGCATCAAGAGACA
AGTCACCTCAGTGCAATTTCCTTAACCCTGAACATCGGCAAACTGGAGAGAAGCTTTCTGGAATGGAAGATGAAATACCTATGGATATTGTTGAGCTAATGGCTAAAAATCAACATGAGCGAGGTCTATCAGACCTCAAATATTTTCATGAATGCCATAACCTCCAGAAAGATAGAAGAAAATTGAAAATGAAAGAAACA
GATCTGAGTCAGGTCAATAAACATGTAGAGGGAGGAACAGGCCTCAAGCAGAACACTGCAACACCTAAGAGTAAAGCAAAGCCCAAACAAACTGGCAAATCAAGCCAGCAGGCCACTTTAAGAAATTGCTGCCAAAGTGATTTACCAGTAGACTATGGCCAAATCTATGATTCCAAGGGTGCAAGAGATAATTTATTCAT
TTCAGACAAGGAAGGGACCACATCTGGCTCATGTAAAGGTGATCTGGCAATGTTGGAATCAACCCGGTGCTTCAATCCACGGGGGAAATATTCTCCAGATTTTGTTGCACCAGTTTTGGATGAAACAATTTCTGCCCGCAACCTGGCAGCCCCCGTTGATGGCACCAAATCACATGTTTCTATTACTCATTGTGATCACT
ATGGAACTTTCTCTAGAAACAAAATGTTGGCAGATTCTATGCAGTTGCAGGGAGTCTCCACTTATTGTGGCCATATTACAATGCAAAATCTTCTCAGGGGAGGCACCTCTGCATCATCAGACTTCACAAGTTCAGGGCTTCCAAGTGTTCAGAATAAATCCGATTCCTCCTTTAGTTGTAATGGGTACTCACATCAAAAC
CTGACAAGGACTGACAGTCCACACAACTTGACCAGTGAAAGATCAGATTTTGGAAATTCTGGCAAAAGATTTGATATTCTATCTGAGAGCCACAAAGGAAATGGTATTCCCAATCTCTCAGTAAGAACAGATGGAAGTTCAGGTCCTCTTTATTTCAACGGACAAAGTAACTCAGTTTCATTGCAGCAGGTAAATGCCCA
AGCAAGACAACCATCTGGGAAGAAACACTGTTTTACCTCCACCCCTGTGCTGAGGCGAATGGGGCAATGTGTATCAGTTCCAGCAAAGTGCGGGAATGAAGAAAGCATTGTAACAGACAATGGACACAGCATAAATTTCTCCAATCTACCACAGGCCTCTTCACAAAAGCATGTCAATTGCTTTCATTCATCAGGGGTAA
TGGAGAGAAGTCAAAGGGAAACATTTTCTAGCACTGAAAGAGTGTTTAAGGGTTCAGAAGCCATTCAAGATAGCATGCGTATGAATGAACAAATCTTGAATTCAACAAAACCAATACCTCCTGTTCCAAAGTTCAGGTCTTTTGGGCATTATGCGTCAAATGGGCACTCTGGAATTTTCACCCCTTCTTCCGCAGTCCCT
GGTAATGCTGATGTTGCCCTAGAATCCTCTTTGTTGAGGACCAAACCTCCCTTCCAAGGTACACTATTGCCTGGCAAAAATCTGAAGAAGGGATTGCAATGTACAAACGATTACAATGGCAATCTAAAAAATTTCTCTACTGCCCCTCCTGCTTGTCAAAGTTCGAAGGTTGTAAAAGGCTTAAGTTCTACCAAAGGCTT
AAGATCATATAGGCCGACACCTACAGCTATGCATCTAAACAGAAACCACGGATCTGCTCCTGGTATTTACCTTGAGAGTAGACACCATTGTTTCCAATCCCCGTTTGTGTTGGAATCTAATCCCCATCAAAACCTAACAAGGGAGGCAGAGAAACCAAAGTCACTGAAACTCAACAAAGGAAATGAGGAATCTGCGGTCT
CTGGCAAAAACGCTTTTAATGTAGAAATATGCACACTGAATCAGAACCCAGCTGAAATCAATATAGATGACGAAGAGGACGGATATTGTTTTGGTTATGACCATTTTAGTTTATCTCATAGAGATTTTGCACATAATGAAAGAAAGAGAGAGATGACAATCCCACAAGGGCAAAAACGGCGGAGAACCTTAAAGAGAAAG
CAAAGGCAAGAATTTCTCAGTAAGAAGGATGGTTATGTTGGTGATCCTGCCAAAATAAATGTGGACAATCTAAATTCTTTGAGGCAGGAATTGACTTCGATGAAAGAACTGGTTGGAAACACCACTTAAAAGGTTGAAATATGGAAACATTATTTTAAAGTTTGTTTCCAAAGCATAGAAAGACTTGTGATTGTGCTAAT
CATGCACTACATCCAGCTGTGGATGATGTCAATAGTCCCACTTGATTCTATCTTATGATTTATTCTCTTCTATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGGCAT
>TRINITY_DN113752_c1_g1_i7 from sample A3 / Example unspliced isoform:GGATACAGAGTTTAATTTTTGTTATTAGGACTCTTTAGTGACAAAGAACATAACCATTTCAGTATAAATTGATATAATTAATGTAAGTTAATAGCCAAATTTTGAATAGGTTGTCTTATTATGTTTGCTGTAATTTTTCAATGTAATTTTTCAATTTCTTATTTTCTGGGAAAAGCTTTACACCATGCCTTAAAATGACA
ATGATTTCTTTCTCTACTTGTATTGCAAATTAGTGATGATATTATTATAATTCTCCTTTTAGAGCTATAAAGTTTAACCTTTACTATTAGGGTTCTTCGCTGACAAAAAGCACAATCATTTCAGTATAAGTTTGATATGATTAATGTAAATTAATAGCTAATTGTTGAATAGTTTGTCTTTTAAAGTTTGTTGTAATTTT
TCAATTTTCTTCACATTTCCTGGGAAAAGCTTTGCAATGTTTTACTACATCTTGAAACTTATTTCTATAATATAAGTATCATTAAAAATAAAATAAAAATATTATCTCTAACTAAAGTCACTTATATAAATAGCCATAGAGACAATATACATTCTAATATCATTTTAAGTTAGAGTCACTTATATGAATAGCTATAGATA
CAATATTTACCTTTCTGTGAACAACATTGAAGACTAAAACTTGAAACTGGGTTTGAATTTTAAAATGCTCGAAAGAAAATCCATGTGGAAGAGGCTCACATCTTGGTTAATAATATTGACCAGTTTATGTTTTATTAGGCATGGAATCATGCGTATGGTCCTCAGTTTTGTTATACTAGAATGATTGAAGACGAGTATTC
TAATTCTCTTTGGTTTACAGTGATCAATGATAGATAGGTGAGATGATGCTCGATTGATTCATGGTCTATTATTTTCTCACAATTCGTGCATTCATGTCACAAGCCTATTCTGATGCATCTTCATCATGCAAGTCATATCTGGACTCTGTTGAGGATGGATAATTTAAATAAACTAATgtaaatctaggtgatctgtatgc
tctaatatgcttctgattcattaagaatgcgcagatttaagttacattttcctcttctaaaaactacgaaagctctataacaaatattactcttattttttggttcagAATTCCTCAACTTCAAGCTCATCTCAAGCTGTCACCAATGCTCCTCAAATGCCCAAAGGCGCCTCACTTTTTGTGTCAGCATCAAGAGACAA
GTCACCTCAGTGCAATTTCCTTAACCCTGAACATCGGCAAACTGGAGAGAAGCTTTCTGGAATGGAAGATGAAATACCTATGGATATTGTTGAGCTAATGGCTAAAAATCAACATGAGCGAGGTCTATCAGACCTCAAATATTTTCATGAATGCCATAACCTCCAGAAAGATAGAAGAAAATTGAAAATGAAAGAAACAG
ATCTGAGTCAGGTCAATAAACATGTAGAGGGAGGAACAGGCCTCAAGCAGAACACTGCAACACCTAAGAGTAAAGCAAAGCCCAAACAAACTGGCAAATCAAGCCAGCAGGCCACTTTAAGAAATTGCTGCCAAAGTGATTTACCAGTAGACTATGGCCAAATCTATGATTCCAAGGGTGCAAGAGATAATTTATTCATT
TCAGACAAGGAAGGGACCACATCTGGCTCATGTAAAGGTGATCTGGCAATGTTGGAATCAACCCGGTGCTTCAATCCACGGGGGAAATATTCTCCAGATTTTGTTGCACCAGTTTTGGATGAAACAATTTCTGCCCGCAACCTGGCAGCCCCCGTTGATGGCACCAAATCACATGTTTCTATTACTCATTGTGATCACTA
TGGAACTTTCTCTAGAAACAAAATGTTGGCAGATTCTATGCAGTTGCAGGGAGTCTCCACTTATTGTGGCCATATTACAATGCAAAATCTTCTCAGGGGAGGCACCTCTGCATCATCAGACTTCACAAGTTCAGGGCTTCCAAGTGTTCAGAATAAATCCGATTCCTCCTTTAGTTGTAATGGGTACTCACATCAAAACC
TGACAAGGACTGACAGTCCACACAACTTGACCAGTGAAAGATCAGATTTTGGAAATTCTGGCAAAAGATTTGATATTCTATCTGAGAGCCACAAAGGAAATGGTATTCCCAATCTCTCAGTAAGAACAGATGGAAGTTCAGGTCCTCTTTATTTCAACGGACAAAGTAACTCAGTTTCATTGCAGCAGGTAAATGCCCAA
GCAAGACAACCATCTGGGAAGAAACACTGTTTTACCTCCACCCCTGTGCTGAGGCGAATGGGGCAATGTGTATCAGTTCCAGCAAAGTGCGGGAATGAAGAAAGCATTGTAACAGACAATGGACACAGCATAAATTTCTCCAATCTACCACAGGCCTCTTCACAAAAGCATGTCAATTGCTTTCATTCATCAGGGGTAAT
GGAGAGAAGTCAAAGGGAAACATTTTCTAGCACTGAAAGAGTGTTTAAGGGTTCAGAAGCCATTCAAGATAGCATGCGTATGAATGAACAAATCTTGAATTCAACAAAACCAATACCTCCTGTTCCAAAGTTCAGGTCTTTTGGGCATTATGCGTCAAATGGGCACTCTGGAATTTTCACCCCTTCTTCCGCAGTCCCTG
GTAATGCTGATGTTGCCCTAGAATCCTCTTTGTTGAGGACCAAACCTCCCTTCCAAGGTACACTATTGCCTGGCAAAAATCTGAAGAAGGGATTGCAATGTACAAACGATTACAATGGCAATCTAAAAAATTTCTCTACTGCCCCTCCTGCTTGTCAAAGTTCGAAGGTTGTAAAAGGCTTAAGTTCTACCAAAGGCTTA
AGATCATATAGGCCGACACCTACAGCTATGCATCTAAACAGAAACCACGGATCTGCTCCTGGTATTTACCTTGAGAGTAGACACCATTGTTTCCAATCCCCGTTTGTGTTGGAATCTAATCCCCATCAAAACCTAACAAGGGAGGCAGAGAAACCAAAGTCACTGAAACTCAACAAAGGAAATGAGGAATCTGCGGTCTC
TGGCAAAAACGCTTTTAATGTAGAAATATGCACACTGAATCAGAACCCAGCTGAAATCAATATAGATGACGAAGAGGACGGATATTGTTTTGGTTATGACCATTTTAGTTTATCTCATAGAGATTTTGCACATAATGAAAGAAAGAGAGAGATGACAATCCCACAAGGGCAAAAACGGCGGAGAACCTTAAAGAGAAAGC
AAAGGCAAGAATTTCTCAGTAAGAAGGATGGTTATGTTGGTGATCCTGCCAAAATAAATGTGGACAATCTAAATTCTTTGAGGCAGGAATTGACTTCGATGAAAGAACTGGTTGGAAACACCACTTAAAAGGTTGAAATATGGAAACATTATTTTAAAGTTTGTTTCCAAAGCATAGAAAGACTTGTGATTGTGCTAATC
ATGCACTACATCCAGCTGTGGATGATGTCAATAGTCCCACTTGATTCTATCTTATGATTTATTCTCTTCTATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGGCAT
Intron 7 GTGAGTGTTG ... ATGTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.9 | 82 | 16 | 15 |
| A2 | 22.4 | 71 | 12 | 29 |
| A3 | 19.66 | 94 | 20 | 26 |
| A4 | 14.93 | 57 | 5 | 15 |
| A5 | 18.84 | 28 | 7 | 6 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 12.5 | 21 | 1 | 5 |
| A8 | 5.88 | 8 | 0 | 1 |
| A9 | 10 | 9 | 1 | 1 |
| A10 | 4.35 | 11 | 1 | 0 |
>TRINITY_DN113752_c1_g1_i1 from sample A3 / Example spliced isoformGAAAAAGCAAGACTATTATTATTATTGTGACGTGTATGCATTCTATTGGACGTTATAACAATACTCTGTCGCTTCCGCAGGGAATTAGTCGGACTGCATCATTTTGCGTTTTATCTTATTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTG
CCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGG
ATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTGAAACTGAAGAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGAT
GATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGGTCAGTGCCCAGACGGCTTTGGATTCTTGAATAGCTAGGGTTTTTACATTTGCCCCCTTCTCAGGTTGTACGGCCTATGCCTTTCCGTTTTTTTTTTGACAATTAGGGTTTTCCCGCATATTGTCATATTTGCTTTGTGATTTCTACAGCTAAT
AGTACGAGCAGTCCGCCACATGTAGAGATTTGGAAGAATTAACCGAGTGCCTTCTGCCATTAGAGATGCAATTTACCGAGTTTTACGCTTTTCTTTAAATGTGTAGATCCCTAAAATTGTAAATTGTATTAGCGTTAATGGTATTTTTATAATTTGTTCAGCACTACTTTTTTTTTTTCAAAAAAATTGTTCAGCCTTAC
TTTATAGTAGGGAGGATGACGCATCTTACAAGTTATTCAATTGTATTAGCGTTAATCGTATTTCTATAATTTGTTCAATCCCTACTTTATGGTAGGGAGCATGACGCATCATATAGGTTATTTTGCCTAGGCTTCGTTTTGCTAATGAGAATGTAATCATTTGATATCCACTCGAACCATTGATGTCAATTGGCGTATGT
TGTTAGGACTTTCCGCGGATACATTCCGTTATTTGACGTAAATACATTTGTCAATTGGCGTATGTTGTTAGGACTTTCCGCGGATACATTCCGTTATTTGACGTAAATACATTCCGTCACAGTTACTTCTTTTTGGCATCCGTACGAAATTACACGAGCATAACTATTTATAGTATTTGTAGGGTTTGTATAATGAGCAG
GTGATCGGTTGCGGTACGAAGCGCGTACAGTTTGCGTCATGGAGAATGCCGAGGTGGTAGACATCGCTTCACAGCAGAATGATGTCGAACCGAAGGCTGTAGATGCAGATGGCCATGACACGGGCAAAGATATGGTTGACGACAAGATTTCTATCGAAAGCTCAACATGCGAGCGTTTCAGTATTCGAGGTTATGTTGAA
ACAATACGTACGCTGGATAGAAACACTTGCTGGCCATTTCCTCAGCACTTACTGCAAACTAGATTGAAGGAAGCAGGCAATCTGGCTCTGCCTCCTCTAGAAATTCCTAGCTACAGATGGTGGAATTGTGAAAGCTGTTTAGCGGACATCATAACTTCTGCTGAGAGCCCAATTGAGAAAGAGTATTTAACGTACTCAGA
TGCTTCTATGCAGGCCTGTGATGGTAACTTTGATCGTGGATGCCCGATGCTCTTGGCTACTTCCAATGTTGATATTCAGGAGAAACAAAAGGAAAATATGCTAGATGGCACAGAAATAGTAGAGAGTAGTAATGTTGATTTAATGCCAGGGGACGCTGTAGGCTCTTTTGCATATGAAACTGACAGAGAGAAGAAATATG
GGGTAGTCACAGATTGTAAAGGAGAATATGGAAGAACTGAAAGTATTGTTCCAATGCAGCTAGAAAATGACAAATCTGAAATTATAGATTTGAAAGAGAAGAAAAGTGGAATCCCTCACTGTGTACCAAATTCTAAAATCTCCGAGGAAACCATCAATTTAATCGATAGTGACGAGAAAGTAGAATGTCCAGAGATGGGT
CAGACGGTAGTGGAAACAATGCCATTCATGCTAGTGACTAAAACGAAAGATAAGTTAGGGTTAAGGAAAAACAAATCAGAAGAACTTCAGATTCCTTGCCAGGTTCCTAATACTTGGGAGTATTTTTCCAGGAACAAGAACGTCTTTAAAGAGATAAGTGAGAAGATGAAAGGAAAAGAAGTGGAACAGGCAAACTCTCC
ACTATTAGGTTCTAAAAATTCTACAGATGCAAACAAGCGAACAAATATCAACCATGGTCCTGTCTGCATTACTTATTCTGAAAATGTTGAACCTGGTCAACAGGTTGTTGTTGAACGAAAAGATGACAAAACAATTTCCAAAGTAGTAGAACCATTGACAGTTCAAACAATGAGATTTAGAATTCCAAACGAGGATGATT
CTCATAGATCCTCAGATACAGGGAACGATGTACCACGTTTGAATGGCAATGGTCGTTCATGTTCTGAACACATGAATATAAACAAGATACCTGAAGTAAAAAAGTGCACTGAACTTTCCCCTAGCCAGTTCTTACTAGAGAAAGAGGATGTGCTGCTCTCAGAACAACCCGGGAAGCTGAAGGCTAGTGAATCCAGGAGT
AAAAGGAAGCCACAGAAGAAGCGACTAATAGCAGATATTATTGCTTCTAAACCCTCTGCTGATGAACTGGAGCAAAATATATGCATGCCTGAAAATAGTGAGCAATCCCCACGTCCGAAGGAAGATGATGCCAAAAAGGCATCAAAACCTACAAGTGATACTAATGGGATATCTGAAGTTAATATTGATGCAGAAATAAA
TAATGTTATCATTAAGAAAGAACGCCCAGAAAAGCTTAAAGTCAGGAAGAAGCAGCCCTGCATAGGAATTGAATCCTTAGATGCTTTCTCAACATTTGTTGCAAAGAATTCCTCAACTTCAAGCTCATCTCAAGCTGTCACCAATGCTCCTCAAATGCCCAAAGGCGCCTCACTTTTTGTGTCAGCATCAAGAGACAAGT
CACCTCAGTGCAATTTCCTTAACCCTGAACATCGGCAAACTGGAGAGAAGCTTTCTGGAATGGAAGATGAAATACCTATGGATATTGTTGAGCTAATGGCTAAAAATCAACATGAGCGAGGTCTATCAGACCTCAAATATTTTCATGAATGCCATAACCTCCAGAAAGATAGAAGAAAATTGAAAATGAAAGAAACAGAT
CTGAGTCAGGTCAATAAACATGTAGAGGGAGGAACAGGCCTCAAGCAGAACACTGCAACACCTAAGAGTAAAGCAAAGCCCAAACAAACTGGCAAATCAAGCCAGCAGGCCACTTTAAGAAATTGCTGCCAAAGTGATTTACCAGTAGACTATGGCCAAATCTATGATTCCAAGGGTGCAAGAGATAATTTATTCATTTC
AGACAAGGAAGGGACCACATCTGGCTCATGTAAAGGTGATCTGGCAATGTTGGAATCAACCCGGTGCTTCAATCCACGGGGGAAATATTCTCCAGATTTTGTTGCACCAGTTTTGGATGAAACAATTTCTGCCCGCAACCTGGCAGCCCCCGTTGATGGCACCAAATCACATGTTTCTATTACTCATTGTGATCACTATG
GAACTTTCTCTAGAAACAAAATGTTGGCAGATTCTATGCAGTTGCAGGGAGTCTCCACTTATTGTGGCCATATTACAATGCAAAATCTTCTCAGGGGAGGCACCTCTGCATCATCAGACTTCACAAGTTCAGGGCTTCCAAGTGTTCAGAATAAATCCGATTCCTCCTTTAGTTGTAATGGGTACTCACATCAAAACCTG
ACAAGGACTGACAGTCCACACAACTTGACCAGTGAAAGATCAGATTTTGGAAATTCTGGCAAAAGATTTGATATTCTATCTGAGAGCCACAAAGGAAATGGTATTCCCAATCTCTCAGTAAGAACAGATGGAAGTTCAGGTCCTCTTTATTTCAACGGACAAAGTAACTCAGTTTCATTGCAGCAGGTAAATGCCCAAGC
AAGACAACCATCTGGGAAGAAACACTGTTTTACCTCCACCCCTGTGCTGAGGCGAATGGGGCAATGTGTATCAGTTCCAGCAAAGTGCGGGAATGAAGAAAGCATTGTAACAGACAATGGACACAGCATAAATTTCTCCAATCTACCACAGGCCTCTTCACAAAAGCATGTCAATTGCTTTCATTCATCAGGGGTAATGG
AGAGAAGTCAAAGGGAAACATTTTCTAGCACTGAAAGAGTGTTTAAGGGTTCAGAAGCCATTCAAGATAGCATGCGTATGAATGAACAAATCTTGAATTCAACAAAACCAATACCTCCTGTTCCAAAGTTCAGGTCTTTTGGGCATTATGCGTCAAATGGGCACTCTGGAATTTTCACCCCTTCTTCCGCAGTCCCTGGT
AATGCTGATGTTGCCCTAGAATCCTCTTTGTTGAGGACCAAACCTCCCTTCCAAGGTACACTATTGCCTGGCAAAAATCTGAAGAAGGGATTGCAATGTACAAACGATTACAATGGCAATCTAAAAAATTTCTCTACTGCCCCTCCTGCTTGTCAAAGTTCGAAGGTTGTAAAAGGCTTAAGTTCTACCAAAGGCTTAAG
ATCATATAGGCCGACACCTACAGCTATGCATCTAAACAGAAACCACGGATCTGCTCCTGGTATTTACCTTGAGAGTAGACACCATTGTTTCCAATCCCCGTTTGTGTTGGAATCTAATCCCCATCAAAACCTAACAAGGGAGGCAGAGAAACCAAAGTCACTGAAACTCAACAAAGGAAATGAGGAATCTGCGGTCTCTG
GCAAAAACGCTTTTAATGTAGAAATATGCACACTGAATCAGAACCCAGCTGAAATCAATATAGATGACGAAGAGGACGGATATTGTTTTGGTTATGACCATTTTAGTTTATCTCATAGAGATTTTGCACATAATGAAAGAAAGAGAGAGATGACAATCCCACAAGGGCAAAAACGGCGGAGAACCTTAAAGAGAAAGCAA
AGGCAAGAATTTCTCAGTAAGAAGGATGGTTATGTTGGTGATCCTGCCAAAATAAATGTGGACAATCTAAATTCTTTGAGGCAGGAATTGACTTCGATGAAAGAACTGGTTGGAAACACCACTTAAAAGGTTGAAATATGGAAACATTATTTTAAAGTTTGTTTCCAAAGCATAGAAAGACTTGTGATTGTGCTAATCAT
GCACTACATCCAGCTGTGGATGATGTCAATAGTCCCACTTGATTCTATCTTATGATTTATTCTCTTCTATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGGCATCATTAAATGAATTATTGTGTCCTTGTTGGGCAT
>TRINITY_DN113752_c1_g1_i11 from sample A3 / Example unspliced isoform:GAAAAAGCAAGACTATTATTATTATTGTGACGTGTATGCATTCTATTGGACGTTATAACAATACTCTGTCGCTTCCGCAGGGAATTAGTCGGACTGCATCATTTTGCGTTTTATCTTATTTACTTTCCTTCCACTAGAAGTAGGAGGGAGAAGAGAGTACAAACCCTAAATCTTAATCAAACCCTACCTATTAGGGTTTG
CCGGTTTCTACTCAACCAAATCTATTTCGCTCTTTTATCCATCAGAGCTTTGTCCCTTCCGCCCTATACGATTGAATCCTCGTAAAATGTAATCGTCTTATCCATTTTTCCATTTTAGCCAGCGAACCTCAGGAGGGGCCGTGACAAAGAATTTATAAAGACGGTGGCGGTTGGAATCTGACTTCAATTTTCTCTGCTGG
ATCGGACGCCCTTTGGTGCTCCGAAGTTGGAATTTGTCGGTTGAAGCGATTGGCGCCGTTCGAAGTTGGGATCTgtgagtgttgatctaactagggccgagacgattttcggcgttgactttgtttctttcatttggaactgaaattcctgctctatttatgcgtttgtgggtgtgttaaaatgtttacagGAAACTGAA
GAGATTTTAGTTCGCAACTGTTAAGCGCATTGCGAATCACAGCTCGCGATAAAAGCCGAGGTTTGGAATTTTGCGTCTCAATCGTGGAGCCAAATGCTAAATATTCTGAAGCTTGATGATTATTTTATGCCAGGCAGTCGCGCGTAGCGAGGGCGGATTTGAGG