sp|Q8GVZ8|C3H48_ORYSJ ----> Putative zinc finger CCCH domain-containing protein 48

Intron 1 GTATCAATAA ... TTGTGTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	24.7	134.2	14.2	44
A2	20.42	136.4	10.8	35
A3	25.85	137.2	13.4	47.8
A4	24.46	80.4	7.6	26
A5	23.59	67.4	5	20.8
A6	24.43	1253.2	110	405
A7	23.82	1115.6	112.4	348.8
A8	25.06	1308.8	108	437.4
A9	23.28	1164.4	102.4	353.2
A10	24.71	862	74	282.8

>TRINITY_DN108309_c0_g1_i2 from sample A1 / Example spliced isoform

CCAAATTACTCGAAAGTTCAAAGTCACGTCAACAGGATCACGGGAGCGAATCAAACTGTAGAAATTTTCTTTAACGGACATATAATTCAATTTGATTTGTGACAATCCAAACCCTAGCAAAATCAAGCCGACGCTAAACAGTTACAAACAGTGGAACCTTCTTCTCCATCTCTCCAATTAAAATGATCTGGAAGGGCGAT
TTGGTGTCCAATTCTGATATTATCATTGGGTTGCTCGCACACTGTTGATTTACCAGAAAGTAAGGAAACGCGTACTGCCTCAGTATAAGAATTCATTCCAGGGGAGTCAAGTCACTCGTGGTCTTCGTTCTCAACTAGAAGATTTCTTGGAAGGAATGCAAATATGTGAAGGAGTTCAAACTTCAAAGCAGCATCACTTT
ATCTTGGAGGTTTAAAGATCTGTACAAAAGCTATTGTAATTGACTAGCTGCCATTATCGCCAGTTAGCATTTCAAATCCCTTTCCCAGTGAAAATGTCGAAGCAAATTGAAGAAATAGAGTTTGAATTAAGTTCTGAATCAACTGGCCACGCTCATGGACCCGGGAGCGGCATTCATTACAAAACGAAACTGTGTCGTAG
TTTCATGCGATACGGGTGGTGTGGACGTGGTTCTTCGTGCAAGTTCGCTCATGGAAAACAGGATCTCAGATACAATATTTTTTACAAAACCAAACTCTGTACCTATTGCATGCAAGGGCGCGGCTGTAGTTTTCCTTCTGTTTGCACATTTGCCCACGGACAAGAGCAGCTGAGGCCGATACTTTTGAATATCCTAACCC
TGATCGTACTTCTTCAAACGCACGCGCCTTTATGGTTCGGCCTGCAACTTTGCTTGCCGCGTTGAGAAACTTTGGGAGCTTCGACTTGTTCAAGCAACATAATATCTGGAGGCGTTGTGGATTTAAAGAAAGGGGAGGCCAGATGGAGTAGGATGTCTTTTATTTTTGGCTAAATGGCCATTTTAAATCTTCATTTAACG
AGGACTTTGATCAAAATTCTCTCCTCTTGAATAATGACCCAGTGTATAACAAAATGAAGCTATGCCTTGCTGTCGGATTGACAATTTTGGGCATTGGATAAAGACGTTGCTATACTTGAGATCATATATGGAATTTATTATTATTACAAGCTGAAGCTCAGCAGATCTTTTTCCAGTGTTTACATAAATATATGAATAAG
CATATTTTATGGTGATGCGTTTGGAAGTCTCTTATGGAAATTCATTTATTTAAACCTGTTCTTTTTCTTTTCCGTGCATGAAATGAATTTACAGATCAATATCTGACTTTGAAGCAGAATTCTAATTGATTTCGAAGCATG

>TRINITY_DN108309_c0_g1_i3 from sample A1 / Example unspliced isoform:

TTGGGAGCTTCGACTTGTTCAAGgtatcaataatggcagagtcccttcaattactttcgtctgaaaagatcattctaccactgccatgatatatttgtttggtgtttcttgtgtccagCAACATAATATCTGGAGGCGTTGTGGATTTAAAGAAAGGGGAGGCCAGATGGAGTAGGATGTCTTTTATTTTTGGCTAAATG
GCCATTTTAAATCTTCATTTAACGAGGACTTTGATCAAAATTCTCTCCTCTTGAATAATGACCCAGTGTATAACAAAATGAAGCTATGCCTTGCTGTCGGATTGACAATTTTGGGCATTGGATAAAGACGTTGCTATACTTGAGATCATATATGGAATTTATTATTATTACAAGCTGAAGCTCAGCAGATCTTTTTCCAG
TGTTTACATAAATATATGAATAAGCATATTTTATGGTGATGCGTTTGGAAGTCTCTTATGGAAATTCATTTATTTAAACCTGTTCTTTTTCTTTTCCGTGCATGAAATGAATTTACAGATCAATATCTGACTTTGAAGCAGAATTCTAATTGATTTCGAAGCATG

Intron 2 GTAAGTGTCG ... TATTTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	35.56	116	6.5	64
A2	32.1	166	25.5	78.5
A3	30.34	186	18	81
A4	31.96	132	12.5	62
A5	27.76	121	13	46.5
A6	31.43	963	63.5	441.5
A7	31.79	1090	96.5	508
A8	31.71	743	47	345
A9	28.97	1115	120.3	454.8
A10	29.82	951	85	404

>TRINITY_DN108309_c0_g1_i2 from sample A1 / Example spliced isoform

CCAAATTACTCGAAAGTTCAAAGTCACGTCAACAGGATCACGGGAGCGAATCAAACTGTAGAAATTTTCTTTAACGGACATATAATTCAATTTGATTTGTGACAATCCAAACCCTAGCAAAATCAAGCCGACGCTAAACAGTTACAAACAGTGGAACCTTCTTCTCCATCTCTCCAATTAAAATGATCTGGAAGGGCGAT
TTGGTGTCCAATTCTGATATTATCATTGGGTTGCTCGCACACTGTTGATTTACCAGAAAGTAAGGAAACGCGTACTGCCTCAGTATAAGAATTCATTCCAGGGGAGTCAAGTCACTCGTGGTCTTCGTTCTCAACTAGAAGATTTCTTGGAAGGAATGCAAATATGTGAAGGAGTTCAAACTTCAAAGCAGCATCACTTT
ATCTTGGAGGTTTAAAGATCTGTACAAAAGCTATTGTAATTGACTAGCTGCCATTATCGCCAGTTAGCATTTCAAATCCCTTTCCCAGTGAAAATGTCGAAGCAAATTGAAGAAATAGAGTTTGAATTAAGTTCTGAATCAACTGGCCACGCTCATGGACCCGGGAGCGGCATTCATTACAAAACGAAACTGTGTCGTAG
TTTCATGCGATACGGGTGGTGTGGACGTGGTTCTTCGTGCAAGTTCGCTCATGGAAAACAGGATCTCAGATACAATATTTTTTACAAAACCAAACTCTGTACCTATTGCATGCAAGGGCGCGGCTGTAGTTTTCCTTCTGTTTGCACATTTGCCCACGGACAAGAGCAGCTGAGGCCGATACTTTTGAATATCCTAACCC
TGATCGTACTTCTTCAAACGCACGCGCCTTTATGGTTCGGCCTGCAACTTTGCTTGCCGCGTTGAGAAACTTTGGGAGCTTCGACTTGTTCAAGCAACATAATATCTGGAGGCGTTGTGGATTTAAAGAAAGGGGAGGCCAGATGGAGTAGGATGTCTTTTATTTTTGGCTAAATGGCCATTTTAAATCTTCATTTAACG
AGGACTTTGATCAAAATTCTCTCCTCTTGAATAATGACCCAGTGTATAACAAAATGAAGCTATGCCTTGCTGTCGGATTGACAATTTTGGGCATTGGATAAAGACGTTGCTATACTTGAGATCATATATGGAATTTATTATTATTACAAGCTGAAGCTCAGCAGATCTTTTTCCAGTGTTTACATAAATATATGAATAAG
CATATTTTATGGTGATGCGTTTGGAAGTCTCTTATGGAAATTCATTTATTTAAACCTGTTCTTTTTCTTTTCCGTGCATGAAATGAATTTACAGATCAATATCTGACTTTGAAGCAGAATTCTAATTGATTTCGAAGCATG

>TRINITY_DN108309_c0_g1_i1 from sample A1 / Example unspliced isoform:

TCTTGGAAGGAATGCAAATATgtaagtgtcgatcaatctgttcttgatttcaaatctttatctctgaaaacaagaaatcggtgctgcagttaatgaaggcaatgagatcgttattttacagGTGAAGGAGTTCAAACTTCAAAGCAGCATCACTTTATCTTGGAGGTTTAAAGATCTGTACAAAAGCTATTGTAATTGAC
TAGCTGCCATTATCGCCAGTTAGCATTTCAAATCCCTTTCCCAGTGAAAATGTCGAAGCAAATTGAAGAAATAGAGTTTGAATTAAGTTCTGAATCAACTGGCCACGCTCATGGACCCGGGAGCGGCATTCATTACAAAACGAAACTGTGTCGTAGTTTCATGCGATACGGGTGGTGTGGACGTGGTTCTTCGTGCAAGT
TCGCTCATGGAAAACAGGATCTCAGATACAATATTTTTTACAAAACCAAACTCTGTACCTATTGCATGCAAGGGCGCGGCTGTAGTTTTCCTTCTGTTTGCACATTTGCCCACGGACAAGAGCAGCTGAGGCCGATACTTTTGAATATCCTAACCCTGATCGTACTTCTTCAAACGCACGCGCCTTTATGGTTCGGCCTG
CAACTTTGCTTGCCGCGTTGAGAAACTTTGGGAGCTTCGACTTGTTCAAGCAACATAATATCTGGAGGCGTTGTGGATTTAAAGAAAGGGGAGGCCAGATGGAGTAGGATGTCTTTTATTTTTGGCTAAATGGCCATTTTAAATCTTCATTTAACGAGGACTTTGATCAAAATTCTCTCCTCTTGAATAATGACCCAGTG
TATAACAAAATGAAGCTATGCCTTGCTGTCGGATTGACAATTTTGGGCATTGGATAAAGACGTTGCTATACTTGAGATCATATATGGAATTTATTATTATTACAAGCTGAAGCTCAGCAGATCTTTTTCCAGTGTTTACATAAATATATGAATAAGCATATTTTATGGTGATGCGTTTGGAAGTCTCTTATGGAAATTCA
TTTATTTAAACCTGTTCTTTTTCTTTTCCGTGCATGAAATGAATTTACAGATCAATATCTGACTTTGAAGCAGAATTCTAATTGATTTCGAAGCATG

Intron 3 GTACTATTCA ... GGATCGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	27.19	158	59	19.2
A2	30.59	177	78	24.6
A3	30.24	143	62	18.2
A4	34.04	124	64	6.2
A5	26.47	75	27	10.6
A6	28.32	1463	578	170
A7	27.85	1235.9	477	150.2
A8	26.16	1283.9	455	185
A9	27.11	1295.7	482	174
A10	28.26	990	390	107.8

>TRINITY_DN108309_c0_g1_i2 from sample A1 / Example spliced isoform

CCAAATTACTCGAAAGTTCAAAGTCACGTCAACAGGATCACGGGAGCGAATCAAACTGTAGAAATTTTCTTTAACGGACATATAATTCAATTTGATTTGTGACAATCCAAACCCTAGCAAAATCAAGCCGACGCTAAACAGTTACAAACAGTGGAACCTTCTTCTCCATCTCTCCAATTAAAATGATCTGGAAGGGCGAT
TTGGTGTCCAATTCTGATATTATCATTGGGTTGCTCGCACACTGTTGATTTACCAGAAAGTAAGGAAACGCGTACTGCCTCAGTATAAGAATTCATTCCAGGGGAGTCAAGTCACTCGTGGTCTTCGTTCTCAACTAGAAGATTTCTTGGAAGGAATGCAAATATGTGAAGGAGTTCAAACTTCAAAGCAGCATCACTTT
ATCTTGGAGGTTTAAAGATCTGTACAAAAGCTATTGTAATTGACTAGCTGCCATTATCGCCAGTTAGCATTTCAAATCCCTTTCCCAGTGAAAATGTCGAAGCAAATTGAAGAAATAGAGTTTGAATTAAGTTCTGAATCAACTGGCCACGCTCATGGACCCGGGAGCGGCATTCATTACAAAACGAAACTGTGTCGTAG
TTTCATGCGATACGGGTGGTGTGGACGTGGTTCTTCGTGCAAGTTCGCTCATGGAAAACAGGATCTCAGATACAATATTTTTTACAAAACCAAACTCTGTACCTATTGCATGCAAGGGCGCGGCTGTAGTTTTCCTTCTGTTTGCACATTTGCCCACGGACAAGAGCAGCTGAGGCCGATACTTTTGAATATCCTAACCC
TGATCGTACTTCTTCAAACGCACGCGCCTTTATGGTTCGGCCTGCAACTTTGCTTGCCGCGTTGAGAAACTTTGGGAGCTTCGACTTGTTCAAGCAACATAATATCTGGAGGCGTTGTGGATTTAAAGAAAGGGGAGGCCAGATGGAGTAGGATGTCTTTTATTTTTGGCTAAATGGCCATTTTAAATCTTCATTTAACG
AGGACTTTGATCAAAATTCTCTCCTCTTGAATAATGACCCAGTGTATAACAAAATGAAGCTATGCCTTGCTGTCGGATTGACAATTTTGGGCATTGGATAAAGACGTTGCTATACTTGAGATCATATATGGAATTTATTATTATTACAAGCTGAAGCTCAGCAGATCTTTTTCCAGTGTTTACATAAATATATGAATAAG
CATATTTTATGGTGATGCGTTTGGAAGTCTCTTATGGAAATTCATTTATTTAAACCTGTTCTTTTTCTTTTCCGTGCATGAAATGAATTTACAGATCAATATCTGACTTTGAAGCAGAATTCTAATTGATTTCGAAGCATG

>TRINITY_DN108309_c0_g1_i4 from sample A1 / Example unspliced isoform:

CCAAATTACTCGAAAGTTCAAAGTCACGTCAACAGGATCACGGGAGCGAATCAAACTGTAGAAATTTTCTTTAACGGACATATAATTCAATTTGATTTGTGACAATCCAAACCCTAGCAAAATCAAGCCGACGCTAAACAGTTACAAACAGTGGAACCTTCTTCTCCATCTCTCCAATTAAAATGATCTGGAAGGGCGAT
TTGGTGTCCAATTCTGATATTATCATTGGGTTGCTCGCACACTGTTGATTTACCAGAAAGTAAGGAAACGCGTACTGCCTCAGTATAAGAATTCATTCCAGGGGAGTCAAGTCACTCGTGGTCTTCGTTCTCAACTAGAAGATTTCTTGGAAGGAATGCAAATATGTGAAGGAGTTCAAACTTCAAAGCAGCATCACTTT
ATCTTGGAGGTTTAAAGATCTGTACAAAAGCTATTGTAATTGACTAGCTGCCATTATCGCCAGTTAGCATTTCAAATCCCTTTCCCAGTGAAAATGTCGAAGCAAATTGAAGAAATAGAGTTTGAATTAAGTTCTGAATCAACTGGCCACGCTCATGGACCCGGGAGCGGCATTCATTACAAAACGAAACTGTGTCGTAG
TTTCATGCGATACGGGTGGTGTGGACGTGGTTCTTCGTGCAAGTTCGCTCATGGAAAACAGGATCTCAGATACAATATTTTTTACAAAACCAAACTCTGTACCTATTGCATGCAAGGGCGCGGCTGTAGTTTTCCTTCTGTTTGCACATTTGCCCACGGACAAGAGCAGCTGAGGCCGATACTTTTgtactattcatggc
agaaaccctttattttttcaaatatttttcaatctagttccaaatctttgtaatcaagggtttcatggaaagtctgtaactacaaaaatctataggagtaatcgagaatagcatttgataggagaaattgtggacaaaaattgattatatagaactagtgcacaatgttttgatatcataatatgcattttgctttatca
tctattgcttcattcctttggcaacataatctttgatatttttttgatggatggatcgacagGAATATCCTAACCCTGATCGTACTTCTTCAAACGCACGCGCCTTTATGGTTCGGCCTGCAACTTTGCTTGCCGCGTTGAGAAACTTTGGGAGCTTCGACTTGTTCAAGCAACATAATATCTGGAGGCGTTGTGGATTT
AAAGAAAGGGGAGGCCAGATGGAGTAGGATGTCTTTTATTTTTGGCTAAATGGCCATTTTAAATCTTCATTTAACGAGGACTTTGATCAAAATTCTCTCCTCTTGAATAATGACCCAGTGTATAACAAAATGAAGCTATGCCTTGCTGTCGGATTGACAATTTTGGGCATTGGATAAAGACGTTGCTATACTTGAGATCA
TATATGGAATTTATTATTATTACAAGCTGAAGCTCAGCAGATCTTTTTCCAGTGTTTACATAAATATATGAATAAGCATATTTTATGGTGATGCGTTTGGAAGTCTCTTATGGAAATTCATTTATTTAAACCTGTTCTTTTTCTTTTCCGTGCATGAAATGAATTTACAGATCAATATCTGACTTTGAAGCAGAATTCTA
ATTGATTTCGAAGCATG