sp|Q9M0E5|VPS15_ARATH ----> Serine/threonine-protein kinase VPS15
Intron 1 ATGACTGAAG ... GCAGTTTCAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.16 | 32 | 35 | 47 |
| A2 | 60.9 | 24 | 31.8 | 43 |
| A3 | 62.74 | 17 | 20.3 | 37 |
| A4 | 59.23 | 16 | 16.5 | 30 |
| A5 | 67.25 | 7 | 16.8 | 12 |
| A6 | 64.63 | 8 | 14.3 | 15 |
| A7 | 55.02 | 24 | 33.8 | 25 |
| A8 | 60.28 | 14 | 24.5 | 18 |
| A9 | 57.47 | 16 | 23.3 | 20 |
| A10 | 57.33 | 16 | 18 | 25 |
>TRINITY_DN44709_c1_g1_i11 from sample A9 / Example spliced isoformACTGCACCTTTCCCAATGACTACATTTTCTCGAACACAGGTTGTTGGATCTGTTTTTTCATCACAGTCGAATTCATCCATGTCTTATGCAGAGCTAATGAACAGATCTCTTATTATGGCAGGTCCTTTGCCACCCAAATTTTTTACTGGTTCTAAGTTGGATAGCAGCTTTGCTGCTACAAAACAAGTTAGTAAGGTCAT
TAGAGATTCAGCTGCAAGAGCACACATGATCACAACTTTTTTGTAACTGCTTCCGATGATTGTACAGTTAAAATATGGGACAGTCGTAGACTAGAAAAAGACATATCTTTCCGTTCAAGATTAACTTATTCTCTAGATGATGGCCGAGCATTGCATGTCACAATGTTTGCGAGTGGATCCCAAGTTGCTGTGGCATCAAG
CAGAGGCACCATCAATGTATTTTCTGTTGATTATGTACCAAGGGGAGGGGGCAATGTAGAGAGATACTCTGGTGTTTTAGACATTAAGAAGAAAGAGACCCAGGAGGGAGCAGTGCTAAGTATGCAAAGCTATGCTACAGAAGGCCCTCCAATCATACTTTACAGCACTCAATATAATGGGATTCATCTGTGGGACATAA
GGGCACAAAATAATGCATGGACATTGAAAGCAAGTCCAGAAGAAGGATATGTTTCTTCAGTTGTACTTGGCCCTTGTCAGAATTGGCTTATGTCAGGTTCTTCCAGAGGTGCGCTTACCCTCTGGGATTTGCGGTTTCTTATCCCAGTAAATACATGGCAGTATTCCGATGGTAGCCCTATAGAGAAAATGTGTCTTCTA
ATGCCAGCTACAAATTCTTCCCCGTCTACGACAAGTGGACCTTCAGTTTATGTAGCTGCAGGATATAATCAGATGGCCCTTTGGAATGCAAAGGATGGGAGCTGTCATCGG
>TRINITY_DN44709_c1_g1_i3 from sample A9 / Example unspliced isoform:AAAAAAACAGGTACAAAGTAGTTATTCTGCTTGGATAGAGACTCGGTACTTGCAGTAGTGTCCCAGAGCGATGAGGAGGCGATGATGTATGGTGCATGAAGGCAGGGGAACGCAAGGAATATATAAACCAGAGAATCGCAGGGCACAGCAGAATTCAGATCCTCTTTCGTCAGTTCTACTTCTTCCAACCCCAAAACAAA
GACGATGGGGAACAAAATCGCTCGCACAACACAGGTATCGGCCTCCGAGTATTATCTTCAGGACCTGCCTTCTACATACAATTTGGTTCTCAAGGAGGTGCTTGGACGGGGGAGGTTCTTTAAATCCGTTCAGTGCAAACACGATGAAGGCCAAGTCCTCGTCAAGGTCTATTTCAAGCGTGGCGACCCCCTCGATCTCA
AGGAATATGAAAGAAAGTTACATGAGATAAAGGATAGACTGAAAGATATTGATCACTCTCATGTGTGGCCATTTCAATGCTGGTGTGAAACAGATAAAGCAGCATATCTTCTTCGTCAATATTTCTGCAATAATCTGCATGACCGAATAAGCACTCGGCCATTTCTCAGTATGATTGAAAAGAAGTGGCTGGCTTTCCAG
ATATTACATGCTTTGAAGCAGTGCCATGAGCGTGGCGTTTGTCATGGTGATATAAAGTGTGAAAATGTACTTGTGACCTCCTGGAATTGGATGTACCTTGCTGACTTTGCATCTTTCAAGCCAACATATATACCTGATGATGATCCATCAGACTTCTCTTTTTTCTTTGACACTGGTGGAAGACGTCGTTGTTATCTTGC
ACCAGAGCGTTTTTATGAACCAGGAAGTGAGGTTCAGATTATTGCAGATGGTGCTTTAAAGCCATCAATGGACATCTTTTCCTTAGGCTGTGTTATTGCAGAGCTTTTTCTCGAGGGGCAGTCACTGTTTGAATTTTCCCAACTGCTTGCTTACCGCAGAGGACAGTATGACCCAGGGCCATACCTGGAGAAGATATCGG
ATGATGGAATCCGCAATATGGTTCGTCATATGATCCAATTGGATCCAGAGGCACGCCTGTCTTGTGCAAGTTACTTGCAAAAATATGCGTCCATTGTATTTCCATGCTATTTTTCCCCATTTTTCCATAACTTTTTTTCTTGCCTAGTGCCTCTGGATACGGATGCCAGGGTTGCATTTACAGAGACTGCTTTTGATGAG
ATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAAGAACGGACAGTCTCGAGAAACCAACATTGGTTATTCAAATCCAGAGTTGAC
CTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATGGGGTCGTGTTCCACAATCTGTGAAGGGA
TGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAGTGTACGGTCTGCTGCCTTGGAAACTATC
AGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTTCTGCAACTGCTTCTCGTTTTCTATTAAGATCGCAATCCCTGAATGAGATGAGCAT
TTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAGCAAACACCAAATGTTCGGCGTGCATTGC
TGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATGTAATGAATTTTTGTTACCAATTCTTCCTGCTTTTTTAAATGACCATGATAAGGAGTTACGAGCTGTATTTTATGAACAGATTATACATGTATGTTATTTTGTTGGCCAAATGAGTGTGGAGGAGTATCTTCTCCCTTATATTGTGCAGGCTCTA
AATGACGATGTTGAAGAAGTCATTGTTAATGCATTGAAGTGTTTGGCACTTCTTTCAAAAGACAAATTGCTCAGAAAAAGATTGCTTCTTGATGCGGTTCAGCAGACTTCTCCTCTACTTTGTCATCCAAGCCAATGGGTTAGGAGGTCAGCTGTCAAATTTATTACAGCAAGCAGTGAGAGTTTACTTCCAGTTGATTC
TCAAGTTTATCTTTCCCCAATTTTACGTCCTTTCCTTCGTCGGGAGCCAACATCTTTAGTTTCTGAGATTGATTTGCTCTTGTGTTTGAAGCCTCCAATGTCAAGAAAGGATTTTCATCACCTTCTAGAAAAAGTAAAGAATTTGCAGTTATCAGAAAAGGACAACAGCCAGAGCAAACTTGGGCAGATTTCGGCTTTGC
CAAAAACAGCAGGGTTTGTTTCCAGCTCATCAAATACAAATGTTGCAAATAAAAGAATCTCTGAAAAGAGATCTTCTATTTCTTCCATATCAACTGATCTGGTATTGACTAAAAGCTGGCCAGGTAAGAAGTCAGATTTGCACGCAAACATGGTAGGATCTCCCAGTCGGAATATAAATTTATCTGAGGCAGAAGATTGT
GTCAAGATGAAAGCCATGGAAAGTTACCTCCAAAATCTGTCCAGTACAATGCAAACTAGAGAGCATAATCGGGAGTTAGAAAGCTTTGAGAGGCTTCAAGTTTCTGCTGTTGGGGTAAGCAGCAGTTCCAACTATGGCCCATCTTATGAAGGCGTTCCAGTATATGTATACCCTCTGAATGAAAGGAAATCTGAAACTGG
AGAAAAAGGGTTGCCATCACTAGGACTGTCTTTGAATGAAGAATGGAACCGAGATTCCGTAGGCCGGCAAGGTACTGCACCTTTCCCAATGACTACATTTTCTCGAACACAGGTTGTTGGATCTGTTTTTTCATCACAGTCGAATTCATCCATGTCTTATGCAGAGCTAATGAACAGATCTCTTATTATGGCAGGTCCTT
TGCCACCCAAATTTTTTACTGGTTCTAAGTTGGATAGCAGCTTTGCTGCTACAAAACAAGTTAGTAAGGTCATTAGAGATTCAGCTGCAAGAGCACACatgactgaagatgcagctatttctgatattgtggataaagtctcgtcattatcagttgatcgagttgcaggttcctcatcatcatctgatgcaatgatgccg
tcttcttgttctcgatcatctgttcctgatggcacctggcgacctcagggaattctagttgcacaccttcaggagcatgctttagctgtcaatgatattgcagtttcacATGATCACAACTTTTTTGTAACTGCTTCCGATGATTGTACAGTTAAAATATGGGACAGTCGTAGACTAGAAAAAGACATATCTTTCCGTTC
AAGATTAACTTATTCTCTAGATGATGGCCGAGCATTGCATGTCACAATGTTTGCGAGTGGATCCCAAGTTGCTGTGGCATCAAGCAGAGGCACCATCAATGTATTTTCTGTTGATTATGTACCAAGGGGAGGGGGCAATGTAGAGAGATACTCTGGTGTTTTAGACATTAAGAAGAAAGAGACCCAGGAGGGAGCAGTGC
TAAGTATGCAAAGCTATGCTACAGAAGGCCCTCCAATCATACTTTACAGCACTCAATATAATGGGATTCATCTGTGGGACATAAGGGCACAAAATAATGCATGGACATTGAAAGCAAGTCCAGAAGAAGGATATGTTTCTTCAGTTGTACTTGGCCCTTGTCAGAATTGGCTTATGTCAGGTTCTTCCAGAGGTGCGCTT
ACCCTCTGGGATTTGCGGTTTCTTATCCCAGTAAATACATGGCAGTATTCCGATGGTAGCCCTATAGAGAAAATGTGTCTTCTAATGCCAGCTACAAATTCTTCCCCGTCTACGACAAGTGGACCTTCAGTTTATGTAGCTGCAGGATATAATCAGATGGCCCTTTGGAATGCAAAGGATGGGAGCTGTCATCGGGTATC
GATAAGCAAATCTTTAGAGAACTTGTTTGTTGGAGTATTTTTTTTTAACATTCTCACTTGAAACTTGTTCTGCAGATCTTTCGGCTACCATGCTCTGGAACTGGCACAGATGTTGCTGAGACCCCTATTTCTTTAGCCAGTTCCTCAAGTCAGATGCTTTCTAAATCCGAAGTCACAGATGACCCTCAACGAAATGGGAA
TTCTAAATACAGGGTCCTTGAGTTGAAAGAACCACCATCTCTAATTCCTGGCATTTGTTCACTTCTTCCACTGCTTGGTGGTGACGTGCTAACTGGAGGGACAGATTTGAGGATACGACTGTGGGATCACTTCAGTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATG
ATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGG
AAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCA
CAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACC
ATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGATTTCGCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAACATCTAGATGAATTCAGCACCCTGGAAAACCTCAGGGCATCCAAATTATGCA
GGATTAATACTGTTATTTGAGATTCTAAAATTTATATCCCGGATTCCGGCAAATTCGTGTCTGAGAAAACGATTTTCACCGGGCCAAATCGTAGCAGTTTTAGACAACTCGATTCTGAAATATCTGCTATTACTATCTTACTGTATGTATGAGAGAGAGTGCCCATGAGCGATTGCAAGCATGCAGACTTGATAGATATT
TCATAAAAAGCGTGTAGGCACGTGCAAACAGGTATAGAAAAAGATTATGGCGTAAGTATGCATGGATACCCACATGAAGGATGCAGAGACTGTGGAGGAAACTCATTAATTGAGTATTCTCTTGTTGTAGGATTACTGTTCTGTGGGATTCCTTAATATAGGGCATGTGCACAGAGGCACATGTATACACATTTAGAACG
AAACTGTTTAATAAAATCTATTCTCCTCGGAAGTTATCTTGTTTAAAGATGACTGTTTTCTGGGATTTGTCATTATACATTTTTTGTG
Intron 2 GTACTGCACC ... ATTATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.83 | 40 | 36 | 29 |
| A2 | 49.57 | 29 | 32 | 25 |
| A3 | 50.94 | 26 | 31 | 23 |
| A4 | 51.52 | 16 | 18 | 16 |
| A5 | 47.06 | 18 | 20 | 12 |
| A6 | 39.13 | 14 | 7 | 11 |
| A7 | 55.32 | 21 | 25 | 27 |
| A8 | 48.05 | 20 | 15 | 22 |
| A9 | 53.33 | 21 | 28 | 20 |
| A10 | 51.22 | 30 | 37 | 26 |
>TRINITY_DN127912_c0_g1_i3 from sample A1 / Example spliced isoformAAAAAAAACAGGTACAAAGTAGTTATTCTGCTTGGATAGAGACTCGGTACTTGCAGTAGTGTCCCAGAGCGATGAGGAGGCGATGATGTATGGTGCATGGAGGCAGGGGAGCGCAAGGAATATATAAACCAGAGAATCGCAGGGCACAGCAGAATTCAAATCCTCTTTCGTCAGTTCTACTTCTTCCAACCCCAAAACAA
AGACGATGGGGAACAAAATCGCTCGCACAACACAGGTATCGGCCTCCGAGTATTATCTTCAGGACCTGCCTTCTACATACAATTTGGTTCTCAAGGAGGTGCTTGGACGGGGGAGGTTCTTTAAATCCGTTCAGTGCAAACACGATGAAGGCCAAGTCCTCGTCAAGGTCTATTTCAAGCGTGGCGACCCCCTCGATCTC
AAGGAATATGAAAGAAAGTTACATGAGATAAAGGATAGACTGAAAGATATTGATCACTCTCATGTGTGGCCATTTCAATGCTGGTGTGAAACAGATAAAGCAGCATATCTTCTTCGTCAATATTTCTGCAATAATCTGCATGACCGAATAAGCACTCGGCCATTTCTCAGTATGATTGAAAAGAAGTGGCTGGCTTTCCA
GATATTACATGCTTTGAAGCAGTGCCATGAGCGTGGCGTTTGTCATGGTGATATAAAGTGTGAAAATGTACTTGTGACCTCCTGGAATTGGCTGTACCTTGCTGACTTTGCATCTTTCAAGCCAACATATATACCTGATGATGATCCATCAGACTTCTCTTTTTTCTTTGACACTGGTGGAAGACGTCGTTGTTATCTTG
CACCAGAGCGTTTTTATGAACCAGGAAGTGAGGTTCAGATTATTGCAGATGGTGCTTTAAAGCCATCAATGGACATCTTTTCCTTAGGCTGTGTTATTGCAGAGCTTTTTCTCGAGGGGCAGTCACTGTTTGAATTTTCCCAACTGCTTGCTTACCGCAGAGGACAGTATGACCCAGGGCCATACCTGGAGAAGATATCG
GATGATGGAATCCGCAATATGGTTCGTCATATGATCCAATTGGATCCAGAGGCACGCCTGTCTTGTGCAAGTTACTTGCAAAAATATGCGTCCATTGTATTTCCATGCTATTTTTCCCCATTTTTCCATAACTTTTTTTCTTGCCTAGTGCCTCTGGATACGGATGCCAGGGTTGCATTTACAGAGACTGCTTTTGATGA
GATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAAGAACGGACAGTCTCGAGAAACCAACATTGGTTATTCAAATCCAGAGTTGA
CCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATGGGGTCGTGTTCCACAATCTGTGAAGGG
ATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAGTGTACGGTCTGCTGCCTTGGAAACTAT
CAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTGCTGCAACTGCTTCTCGTTTTCTATTAAGATCGCAATCCCTGAATGAGATGAGCA
TTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAGCAGACACCAAATGTTCGGCGTGCATTG
CTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATGTAATGAATTTTTGTTACCAATTCTTCCTGCTTTTTTAAATGACCATGATAAGGAGTTACGAGCTGTATTTTATGAACAGATTATACATGTATGTTATTTTGTTGGCCAAATGAGTGTGGAGGAGTATCTTCTCCCTTATATTGTGCAGGCTCT
AAATGACGATGTTGAAGAAGTCATTGTTAATGCATTGAAGTGTTTGGCACTTCTTTCAAAAGACAAATTGCTCAGAAAAAGATTGCTTCTTGATGCGGTTCAGCAGACTTCTCCTCTACTTTGTCATCCAAGCCAATGGGTTAGGAGGTCAGCTGTCAAATTTATTACAGCAAGCAGTGAGAGTTTACTTCCAGTTGATT
CTCAAGTTTATCTTTCCCCAATTTTACGTCCTTTCCTTCGTCGGGAGCCAACATCTTTAGTTTCTGAGATTGATTTGCTCTCGTGTTTGAAGCCTCCAATGTCAAGAAAGGATTTTCATCACCTTCTAGAAAAAGTAAAGAATTTGCAGTTATCAGAAAAGGACAACAGCCAGAGCAAACTTGGGCAGATTTCGGCTTTG
CCAAAAACAGCAGGGTTTGTTTCCAGCTCATCAAATACAAATGTTGCAAATAAAAGAATCTCTGAAAAGAGATCTTCTATTTCTTCCATATCAACTGATCTGGTATTGACTAAAAGCTGGCCAGGTAAGAAGTCAGATTTGCACGCAAACATGGTAGGATCTCCCAGTCGGAATATAAATTTATCTGAGGCAGAAGATTG
TGTCAAGATGAAAGCCATGGAAAGTTACCTCCAAAATCTGTCCAGTACAATGCAAACTAGAGAGCATAATCGGGAGTTAGAAAGCTTTGAGAGGCTTCAAGTTTCTGCTGTTGGGGTAAGCAGCAGTTCCAACTATGGCCCATCTTATGAAGGCGTTCCAGTATATGTATACCCTCTGAATGAAAGGAAATCTGAAACTG
GAGAAAAAGGGTTGCCATCACTAGGACTGTCTTTGAATGAAGAATGGAACCGAGATTCCGTAGGCCGGCAAGGTCCTTTGCCACCCAAATTTTTTACTGGTTCTAAGTTGGATAGCAGCTTTGCTGCTACAAAACAAGTTAGTAAGGTCATTAGAGATTCAGCTGCAAGAGCACACATGACTGAAGATGCAGCTATTTCT
GATATTGTGGATAAAGTCTCGTCATTATCAGTTGATCGAGTTGCAGGTTCCTCATCATCATCTGATGCAATGATGCCGTCTTCTTGTTCTCGATCATCTGTTCCTGATGGCACCTGGCGACCTCAGGGAATTCTAGTTGCACACCTTCAGGAGCATGCTTTAGCTGTCAATGATATTGCAGTTTCACATGATCACAACTT
TTTTGTAACTGCTTCCGATGATTGTACAGTTAAAATATGGGACAGTCGTAGACTAGAAAAAGACATATCTTTCCGTTCAAGATTAACTTATTCTCTAGATGATGGCCGAGCATTGCATGTCACAATGTTTGCGAGTGGATCCCAAGTTGCTGTGGCATCAAGCAGAGGCACCATCAATGTATTTTCTGTTGATTATGTAC
CAAGGGGAGGGGGCAATGTAGAGAGATACTCTGGTGTTTTAGACATTAAGAAGAAAGAGACCCAGGAGGGAGCAGTGCTAAGTATGCAAAGCTATGCTACAGAAGGCCCTCCAATCATACTTTACAGCACTCAATATAATGGGATTCATCTGTGGGACATAAGGGCACAAAATAATGCATGGACATTGAAAGCAAGTCCA
GAAGAAGGATATGTTTCTTCAGTTGTACTTGGCCCTTGTCAGAATTGGCTTATGTCAGGTTCTTCCAGAGGTGCGCTTACCCTCTGGGATTTGCGGTTTCTTATCCCAGTAAATACATGGCAGTATTCCGATGGTAGCCCTATAGAGAAAATGTGTCTTCTAATGCCAGCTACAAATTCTTCCCCGTCTACGACAAGTGG
ACCTTCAGTTTATGTAGCTGCAGGATATAATCAGATGGCCCTTTGGAATGCAAAGGATGGGAGCTGTCATCGGATCTTTCGGCTACCATGCTCTGGAACTGGCACAGATGTTGCTGAGACCCCTATTTCTTTAGCCAGTTCCTCAAGTCAGATGCTTTCTAAATCCGAAGTCACAGATGACCCTCAACGAAATGGGAATT
CTAAATACAGGGTCCTTGAGTTGAAAGAACCACCATCTCTAATTCCTGGCATTTGTTCACTTCTTCCACTGCTTGGTGGTGACGTGCTAACTGGAGGGACAGATTTGAGGATACGACTGTGGGATCACTTCAGTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGAT
ATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAA
GTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACA
GTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCAT
CAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGAAAAGTGTG
>TRINITY_DN127912_c0_g1_i2 from sample A1 / Example unspliced isoform:AAAAAAAACAGGTACAAAGTAGTTATTCTGCTTGGATAGAGACTCGGTACTTGCAGTAGTGTCCCAGAGCGATGAGGAGGCGATGATGTATGGTGCATGGAGGCAGGGGAGCGCAAGGAATATATAAACCAGAGAATCGCAGGGCACAGCAGAATTCAAATCCTCTTTCGTCAGTTCTACTTCTTCCAACCCCAAAACAA
AGACGATGGGGAACAAAATCGCTCGCACAACACAGGTATCGGCCTCCGAGTATTATCTTCAGGACCTGCCTTCTACATACAATTTGGTTCTCAAGGAGGTGCTTGGACGGGGGAGGTTCTTTAAATCCGTTCAGTGCAAACACGATGAAGGCCAAGTCCTCGTCAAGGTCTATTTCAAGCGTGGCGACCCCCTCGATCTC
AAGGAATATGAAAGAAAGTTACATGAGATAAAGGATAGACTGAAAGATATTGATCACTCTCATGTGTGGCCATTTCAATGCTGGTGTGAAACAGATAAAGCAGCATATCTTCTTCGTCAATATTTCTGCAATAATCTGCATGACCGAATAAGCACTCGGCCATTTCTCAGTATGATTGAAAAGAAGTGGCTGGCTTTCCA
GATATTACATGCTTTGAAGCAGTGCCATGAGCGTGGCGTTTGTCATGGTGATATAAAGTGTGAAAATGTACTTGTGACCTCCTGGAATTGGCTGTACCTTGCTGACTTTGCATCTTTCAAGCCAACATATATACCTGATGATGATCCATCAGACTTCTCTTTTTTCTTTGACACTGGTGGAAGACGTCGTTGTTATCTTG
CACCAGAGCGTTTTTATGAACCAGGAAGTGAGGTTCAGATTATTGCAGATGGTGCTTTAAAGCCATCAATGGACATCTTTTCCTTAGGCTGTGTTATTGCAGAGCTTTTTCTCGAGGGGCAGTCACTGTTTGAATTTTCCCAACTGCTTGCTTACCGCAGAGGACAGTATGACCCAGGGCCATACCTGGAGAAGATATCG
GATGATGGAATCCGCAATATGGTTCGTCATATGATCCAATTGGATCCAGAGGCACGCCTGTCTTGTGCAAGTTACTTGCAAAAATATGCGTCCATTGTATTTCCATGCTATTTTTCCCCATTTTTCCATAACTTTTTTTCTTGCCTAGTGCCTCTGGATACGGATGCCAGGGTTGCATTTACAGAGACTGCTTTTGATGA
GATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAAGAACGGACAGTCTCGAGAAACCAACATTGGTTATTCAAATCCAGAGTTGA
CCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATGGGGTCGTGTTCCACAATCTGTGAAGGG
ATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAGTGTACGGTCTGCTGCCTTGGAAACTAT
CAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTGCTGCAACTGCTTCTCGTTTTCTATTAAGATCGCAATCCCTGAATGAGATGAGCA
TTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAGCAGACACCAAATGTTCGGCGTGCATTG
CTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATGTAATGAATTTTTGTTACCAATTCTTCCTGCTTTTTTAAATGACCATGATAAGGAGTTACGAGCTGTATTTTATGAACAGATTATACATGTATGTTATTTTGTTGGCCAAATGAGTGTGGAGGAGTATCTTCTCCCTTATATTGTGCAGGCTCT
AAATGACGATGTTGAAGAAGTCATTGTTAATGCATTGAAGTGTTTGGCACTTCTTTCAAAAGACAAATTGCTCAGAAAAAGATTGCTTCTTGATGCGGTTCAGCAGACTTCTCCTCTACTTTGTCATCCAAGCCAATGGGTTAGGAGGTCAGCTGTCAAATTTATTACAGCAAGCAGTGAGAGTTTACTTCCAGTTGATT
CTCAAGTTTATCTTTCCCCAATTTTACGTCCTTTCCTTCGTCGGGAGCCAACATCTTTAGTTTCTGAGATTGATTTGCTCTCGTGTTTGAAGCCTCCAATGTCAAGAAAGGATTTTCATCACCTTCTAGAAAAAGTAAAGAATTTGCAGTTATCAGAAAAGGACAACAGCCAGAGCAAACTTGGGCAGATTTCGGCTTTG
CCAAAAACAGCAGGGTTTGTTTCCAGCTCATCAAATACAAATGTTGCAAATAAAAGAATCTCTGAAAAGAGATCTTCTATTTCTTCCATATCAACTGATCTGGTATTGACTAAAAGCTGGCCAGGTAAGAAGTCAGATTTGCACGCAAACATGGTAGGATCTCCCAGTCGGAATATAAATTTATCTGAGGCAGAAGATTG
TGTCAAGATGAAAGCCATGGAAAGTTACCTCCAAAATCTGTCCAGTACAATGCAAACTAGAGAGCATAATCGGGAGTTAGAAAGCTTTGAGAGGCTTCAAGTTTCTGCTGTTGGGGTAAGCAGCAGTTCCAACTATGGCCCATCTTATGAAGGCGTTCCAGTATATGTATACCCTCTGAATGAAAGGAAATCTGAAACTG
GAGAAAAAGGGTTGCCATCACTAGGACTGTCTTTGAATGAAGAATGGAACCGAGATTCCGTAGGCCGGCAAGgtactgcacctttcccaatgactacattttctcgaacacaggttgttggatctgttttttcatcacagtcgaattcatccatgtcttatgcagagctaatgaacagatctcttattatggcagGTCCT
TTGCCACCCAAATTTTTTACTGGTTCTAAGTTGGATAGCAGCTTTGCTGCTACAAAACAAGTTAGTAAGGTCATTAGAGATTCAGCTGCAAGAGCACACATGACTGAAGATGCAGCTATTTCTGATATTGTGGATAAAGTCTCGTCATTATCAGTTGATCGAGTTGCAGGTTCCTCATCATCATCTGATGCAATGATGCC
GTCTTCTTGTTCTCGATCATCTGTTCCTGATGGCACCTGGCGACCTCAGGGAATTCTAGTTGCACACCTTCAGGAGCATGCTTTAGCTGTCAATGATATTGCAGTTTCACATGATCACAACTTTTTTGTAACTGCTTCCGATGATTGTACAGTTAAAATATGGGACAGTCGTAGACTAGAAAAAGACATATCTTTCCGTT
CAAGATTAACTTATTCTCTAGATGATGGCCGAGCATTGCATGTCACAATGTTTGCGAGTGGATCCCAAGTTGCTGTGGCATCAAGCAGAGGCACCATCAATGTATTTTCTGTTGATTATGTACCAAGGGGAGGGGGCAATGTAGAGAGATACTCTGGTGTTTTAGACATTAAGAAGAAAGAGACCCAGGAGGGAGCAGTG
CTAAGTATGCAAAGCTATGCTACAGAAGGCCCTCCAATCATACTTTACAGCACTCAATATAATGGGATTCATCTGTGGGACATAAGGGCACAAAATAATGCATGGACATTGAAAGCAAGTCCAGAAGAAGGATATGTTTCTTCAGTTGTACTTGGCCCTTGTCAGAATTGGCTTATGTCAGGTTCTTCCAGAGGTGCGCT
TACCCTCTGGGATTTGCGGTTTCTTATCCCAGTAAATACATGGCAGTATTCCGATGGTAGCCCTATAGAGAAAATGTGTCTTCTAATGCCAGCTACAAATTCTTCCCCGTCTACGACAAGTGGACCTTCAGTTTATGTAGCTGCAGGATATAATCAGATGGCCCTTTGGAATGCAAAGGATGGGAGCTGTCATCGGATCT
TTCGGCTACCATGCTCTGGAACTGGCACAGATGTTGCTGAGACCCCTATTTCTTTAGCCAGTTCCTCAAGTCAGATGCTTTCTAAATCCGAAGTCACAGATGACCCTCAACGAAATGGGAATTCTAAATACAGGGTCCTTGAGTTGAAAGAACCACCATCTCTAATTCCTGGCATTTGTTCACTTCTTCCACTGCTTGGT
GGTGACGTGCTAACTGGAGGGACAGATTTGAGGATACGACTGTGGGATCACTTCAGTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCT
TGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTG
TACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATA
TACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGAAAAGTGTG
Intron 3 GTGCGCTTAC ... TGTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 13 | 65 | 13 |
| A2 | 80.77 | 5 | 21 | 21 |
| A3 | 91.11 | 2 | 25 | 16 |
| A4 | 92.45 | 2 | 37 | 12 |
| A5 | 80.95 | 2 | 13 | 4 |
| A6 | 84.38 | 5 | 34 | 20 |
| A7 | 78.26 | 15 | 77 | 31 |
| A8 | 82.3 | 10 | 71 | 22 |
| A9 | 79.59 | 10 | 49 | 29 |
| A10 | 77.78 | 6 | 31 | 11 |
>TRINITY_DN48182_c0_g1_i9 from sample A7 / Example spliced isoformCCTTTGCCACCCAAATTTTTTACTGGTTCTAAGTTGGATAGCAGCTTTGCTGCTACAAAACAAGTTAGTAAGGTCATTAGAGATTCAGCTGCAAGAGCACACATGACTGAAGATGCAGCTATTACTGATATTGTGGATAAAGTCTCGTCATTATCAGTTGATCGAGTTGCAGGTTCCTCATCATCATCTGATGCAATGAT
GCCGTCTTCTTGTTCTCGATCATCTGTTCCTGATGGCACCTGGCGACCTCAGGGAATTCTAGTTGCACACCTTCAGGAGCATGCTTTAGCTGTCAATGATATTGCAGTTTCACATGATCACAACTTTTTTGTAACTGCTTCCGATGATTGTACAGTTAAAATATGGGACAGTCGTAGACTAGAAAAAGACATATCTTTCC
GTTCAAGATTAACTTATTCTCTAGATGATGGCCGAGCATTGCATGTCACAATGTTTGCGAGTGGATCCCAAGTTGCTGTGGCATCAAGCAGAGGCACCATCAATGTATTTTCTGTTGATTATGTACCAAGGGGAGGGGGCAATGTAGAGAGATACTCTGGTGTTTTAGACATTAAGAAGAAAGAGACCAAGGAGGGAGCA
GTGCTAAGTATGCAAAGCTATGCTACAGAAGGCCCTCCAATCATACTTTACAGCACTCAATATAATGGGATTCATCTGTGGGACATAAGGGCACAAAATAATGCATGGACATTGAAAGCAAGTCCAGAAGAAGGATATGTTTCTTCAGTTGTACTTGGCCCTTGTCAGAATTGGCTTATGTCAGGTTCTTCCAGAGATCT
TTCGGCTACCATGCT
>TRINITY_DN48182_c0_g1_i2 from sample A7 / Example unspliced isoform:AAAAAAACAGGTACAAAGTAGTTATTCTGCTTGGATAGAGACTCGGTACTTGCAGTAGTGTCCCAGAGCGATGAGGAGGCGATGATGTATGGTGCATGAAGGCAGGGGAACGCAAGGAATATATAAACCAGAGAATCGCAGGGCACAGCAGAATTCAAATCCTCTTTCGTCAGTTCTACTTCTTCCAACCCCAAAACAAA
GACGATGGGGAACAAAATCGCTCGCACAACACAGGTATCGGCCTCCGAGTATTATCTTCAGGACCTGCCTTCTACATACAATTTGGTTCTCAAGGAGGTGCTTGGACGGGGGAGGTTCTTTAAATCCGTTCAGTGCAAACACGATGAAGGCCAAGTCCTCGTCAAGGTCTATTTCAAGCGTGGCGACCCCCTCGATCTCA
AGGAATATGAAAGAAAGTTACATGAGATAAAGGATAGACTGAAAGATATTGATCACTCTCATGTGTGGCCATTTCAATGCTGGTGTGAAACAGATAAAGCAGCATATCTTCTTCGTCAATATTTCTGCAATAATCTGCATGACCGAATAAGCACTCGGCCATTTCTCAGTATGATTGAAAAGAAGTGGCTGGCTTTCCAG
ATATTACATGCTTTGAAGCAGTGCCATGAGCGTGGCGTTTGTCATGGTGATATAAAGTGTGAAAATGTACTTGTGACCTCCTGGAATTGGCTGTACCTTGCTGACTTTGCATCTTTCAAGCCAACATATATACCTGATGATGATCCATCAGACTTCTCTTTTTTCTTTGACACTGGTGGAAGACGTCGTTGTTATCTTGC
ACCAGAGCGTTTTTATGAACCAGGAAGTGAGGTTCAGATTATTGCAGATGGTGCTTTAAAGCCATCAATGGACATCTTTTCCTTAGGCTGTGTTATTGCAGAGCTTTTTCTCGAGGGGCAGTCACTGTTTGAATTTTCCCAACTGCTTGCTTACCGCAGAGGACAGTATGACCCAGGGCCATACCTGGAGAAGATATCGG
ATGATGGAATCCGCAATATGGTTCGTCATATGATCCAATTGGATCCAGAGGCACGCCTGTCTTGTGCAAGTTACTTGCAAAAATATGCGTCCATTGTATTTCCATGCTATTTTTCCCCATTTTTCCATAACTTTTTTTCTTGCCTAGTGCCTCTGGATACGGATGCCAGGGTTGCATTTACAGAGACTGCTTTTGATGAG
ATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAGGAACGGACAGTCTCGAGAAACCAACATTGGTTATTCAAATCCAGAGTTGAC
CTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATGGGGTCGTGTTCCACAATCTGTGAAGGGA
TGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAGTGTACGGTCTGCTGCCTTGGAAACTATC
AGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTGCTGCAACTGCTTCTCGTTTTCTATTAAGATCGCAATCCCTGAATGAGATGAGCAT
TTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAGCAAACACCAAATGTTCGGCGTGCATTGC
TGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATGTAATGAATTTTTGTTACCAATTCTTCCTGCTTTTTTAAATGACCATGATAAGGAGTTACGAGCTGTATTTTATGAACAGATTATACATGTATGTTATTTTGTTGGCCAAATGAGTGTGGAGGAGTATCTTCTCCCTTATATTGTGCAGGCTCTA
AATGACGATGTTGAAGAAGTCATTGTTAATGCATTGAAGTGTTTGGCACTTCTTTCAAAAGACAAATTGCTCAGAAAAAGATTGCTTCTTGATGCGGTTCAGCAGACTTCTCCTCTACTTTGTCATCCAAGCCAATGGGTTAGGAGGTCAGCTGTCAAATTTATTACAGCAAGCAGTGAGAGTTTACTTCCAGTTGATTC
TCAAGTTTATCTTTCCCCAATTTTACGTCCTTTCCTTCGTCGGGAGCCAACATCTTTAGTTTCTGAGATTGATTTGCTCTCGTGTTTGAAGCCTCCAATGTCAAGAAAGGATTTTCATCACCTTCTAGAAAAAGTAAAGAATTTGCAGTTATCAGAAAAGGACAACAGCCAGAGCAAACTTGGGCAGATTTCGGCTTTGC
CAAAAACAGCAGGGTTTGTTTCCAGCTCATCAAATACAAATGTTGCAAATAAAAGAATCTCTGAAAAGAGATCTTCTATTTCTTCCATATCAACTGATCTGGTATTGACTAAAAGCTGGCCAGGTAAGAAGTCAGATTTGCACGCAAACATGGTAGGATCTCCCAGTCGGAATATAAATTTATCTGAGGCAGAAGATTGT
GTCAAGATGAAAGCCATGGAAAGTTACCTCCAAAATCTGTCCAGTACAATGCAAACTAGAGAGCATAATCGGGAGTTAGAAAGCTTTGAGAGGCTTCAAGTTTCTGCTGTTGGGGTAAGCAGCAGTTCCAACTATGGCCCATCTTATGAAGGCGTTCCAGTATATGTATACCCTCTGAATGAAAGGAAATCTGAAACTGG
AGAAAAAGGGTTGCCATCACTAGGACTGTCTTTGAATGAAGAATGGAACCGAGATTCCGTAGGCCGGCAAGGTACTGCACCTTTCCCAATGACTACATTTTCTCGAACACAGGTTGTTGGATCTGTTTTTTCATCACAGTCGAATTCATCCATGTCTTATGCAGAGCTAATGAACAGATCTCTTATTATGGCAGGTCCTT
TGCCACCCAAATTTTTTACTGGTTCTAAGTTGGATAGCAGCTTTGCTGCTACAAAACAAGTTAGTAAGGTCATTAGAGATTCAGCTGCAAGAGCACACATGACTGAAGATGCAGCTATTACTGATATTGTGGATAAAGTCTCGTCATTATCAGTTGATCGAGTTGCAGGTTCCTCATCATCATCTGATGCAATGATGCCG
TCTTCTTGTTCTCGATCATCTGTTCCTGATGGCACCTGGCGACCTCAGGGAATTCTAGTTGCACACCTTCAGGAGCATGCTTTAGCTGTCAATGATATTGCAGTTTCACATGATCACAACTTTTTTGTAACTGCTTCCGATGATTGTACAGTTAAAATATGGGACAGTCGTAGACTAGAAAAAGACATATCTTTCCGTTC
AAGATTAACTTATTCTCTAGATGATGGCCGAGCATTGCATGTCACAATGTTTGCGAGTGGATCCCAAGTTGCTGTGGCATCAAGCAGAGGCACCATCAATGTATTTTCTGTTGATTATGTACCAAGGGGAGGGGGCAATGTAGAGAGATACTCTGGTGTTTTAGACATTAAGAAGAAAGAGACCAAGGAGGGAGCAGTGC
TAAGTATGCAAAGCTATGCTACAGAAGGCCCTCCAATCATACTTTACAGCACTCAATATAATGGGATTCATCTGTGGGACATAAGGGCACAAAATAATGCATGGACATTGAAAGCAAGTCCAGAAGAAGGATATGTTTCTTCAGTTGTACTTGGCCCTTGTCAGAATTGGCTTATGTCAGGTTCTTCCAGAGgtgcgctt
accctctgggatttgcggtttcttatcccagtaaatacatggcagtattccgatggtagccctatagagaaaatgtgtcttctaatgccagctacaaattcttccccgtctacgacaagtggaccttcagtttatgtagctgcaggatataatcagatggccctttggaatgcaaaggatgggagctgtcatcgggtatc
gataagcaaatctttagagaacttgtttgttggagtatttttttttaacattctcacttgaaacttgttctgcagATCTTTCGGCTACCATGCTCTGGAACTGGCACAGATGTTGCTGAGACCCCTATTTCTTTAGCTAGTTCCTCAAGTCAGATGCTTTCTAAATCCGAAGTCACAGATGACCCTCAACGAAATGGGAA
TTCTAAATACAGGGTCCTTGAGTTGAAAGAACCACCATCTCTAATTCCTGGCATTTGTTCACTTCTTCCACTGCTTGGTGGTGACGTGCTAACTGGAGGGACAGATTTGAGGATACGACTGTGGGATCACTTCAGTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATG
ATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGG
AAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCA
CAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACC
ATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGATTTCGCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAACATCTAGATGAATTCAGCACCCTGGAAAACCTCAGGGCATCCAAATTATGCA
GGATTAATACTGTTATTTGAGATTCTAAAATTTATATCCCGGATTCCGGCAAATTCGTGTCTGAGAAAACGATTTTCACCGGGCCAAATCGTAGCAGTTTTAGACAACTCGATTCTGAAATATCTGCTATTACTATCTTACTGTATGTATGAGAGAGAGTGCCCATGAGCGATTGCAAGCATGCAGACTTGATAGATATT
TCATAAAAAGCGTGTAGGCACGTGCAAACAGGTATAGAAAAAGATTATGGCGTAAGTATGCATGGATACACACATGAAGGATGCAGAGACTGTGGAGGAAACTCATTAATTGAGTATTCTCTTGTTGTAGGATTACTGTTCTGTGGGATTCCTTAATATAGGGCATGTGCACAGAGGCACATGTATACACATTTAG
Intron 4 GTAATGAATT ... ATCACTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 21 | 44 | 40 |
| A2 | 80.56 | 7 | 34 | 24 |
| A3 | 71.43 | 12 | 26 | 34 |
| A4 | 74 | 13 | 37 | 37 |
| A5 | 52.38 | 10 | 6 | 16 |
| A6 | 70.91 | 16 | 11 | 67 |
| A7 | 63.22 | 32 | 10 | 100 |
| A8 | 58.33 | 40 | 14 | 98 |
| A9 | 64.16 | 31 | 29 | 82 |
| A10 | 64.54 | 25 | 20 | 71 |
>TRINITY_DN44679_c1_g1_i4 from sample A8 / Example spliced isoformTGCATTTACAGAGACTGCTTTTGATGAGATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAGGAACGGACAGTCTCGAGAAACCA
ACATTGGTTATTCAAATCCAGAGTTGACCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATG
GGGTCGTGTTCCACAATCTGTGAAGGGATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAG
TGTACGGTCTGCTGCCTTGGAAACTATCAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTTCTGCAACTGCTTCTCGTTTTCTATTAA
GATCGCAATCCCTGAATGAGATGAGCATTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAG
CAAACACCAAATGTTCGGCGTGCATTGCTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTG
ACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGAT
AGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAG
CTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGAAAAG
TGTGACGATTTCGCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAACATCTAGATGAATTCAGCACCCTGGAAAACCTCAGGGCATCCAAATTATGCAGGATTAATACTGTTATTTGAGATTCTAAAATTTATATCCCGGATTCCGGC
AAATTCGTGTCTGAGAAAACGATTTTCACCGGGCCAAATCGTAGCAGTTTTAGACAACTCGATTCTGAAATATCTGCTATTACTATCTTACTGTATGTATGAGAGAGAGTGCCCATGAGCGATTGCAAGCATGCAGACTTGATAGATATTTCATAAAAAGCGTGTAGGCACGTGCAAACAGGTATAGAAAAAGATTATGG
CGTAAGTATGCATGGATACACACATGAAGGATGCAGAGACTGTGGAGGAAACTCATTAATTGAGTATTCTCTTGTTGTAGGATTACTGTTCTGTGGGATTCCTTAATATAGGGCATGTGCACAGAGGCACATGTATACACATTTAGAACGAAACTGTTTAATAAAATCTATTCTCCTCGGAAGTTATCTTGTTTAAAGAT
GACTGTTTTCTG
>TRINITY_DN44679_c1_g1_i7 from sample A8 / Example unspliced isoform:TGCATTTACAGAGACTGCTTTTGATGAGATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAGGAACGGACAGTCTCGAGAAACCA
ACATTGGTTATTCAAATCCAGAGTTGACCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATG
GGGTCGTGTTCCACAATCTGTGAAGGGATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAG
TGTACGGTCTGCTGCCTTGGAAACTATCAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTTCTGCAACTGCTTCTCGTTTTCTATTAA
GATCGCAATCCCTGAATGAGATGAGCATTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAG
CAAACACCAAATGTTCGGCGTGCATTGCTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATgtaatgaatttttgttaccaattcttcctgcttttttaaatgaccatgataaggagttacgagctgtattttatgaacagattatacatgtatgttattttgttggccaaatgagtgtggaggagta
tcttctcccttatattgtgcaggctctaaatgacgatgttgaagaagtcattgttaatgcattgaagtgtttggcacttctttcaaaagacaaattgctcagaaaaagattgcttcttgatgcggttcagcagacttctcctctactttgtcatccaagccaatgggttaggaggtcagctgtcaaatttattacagcaa
gcagtgagagtttacttccagttgattctcaagtttatctttccccaattttacgtcctttccttcgtcgggagccaacatctttagtttctgagattgatttgctctcgtgtttgaagcctccaatgtcaagaaaggattttcatcaccttctagaaaaagtaaagaatttgcagttatcagaaaaggacaacagccag
agcaaacttgggcagatttcggctttgccaaaaacagcagggtttgtttccagctcatcaaatacaaatgttgcaaataaaagaatctctgaaaagagatcttctatttcttccatatcaactgatctggtattgactaaaagctggccaggtaagaagtcagatttgcacgcaaacatggtaggatctcccagtcggaa
tataaatttatctgaggcagaagattgtgtcaagatgaaagccatggaaagttacctccaaaatctgtccagtacaatgcaaactagagagcataatcgggagttagaaagctttgagaggcttcaagtttctgctgttggggtaagcagcagttccaactatggcccatcttatgaaggcgttccagtatatgtatacc
ctctgaatgaaaggaaatctgaaactggagaaaaagggttgccatcactaggactgtctttgaatgaagaatggaaccgagattccgtaggccggcaaggtcctttgccacccaaattttttactggttctaagttggatagcagctttgctgctacaaaacaagttagtaaggtcattagagattcagctgcaagagca
cacatgactgaagatgcagctatttctgatattgtggataaagtctcgtcattatcagttgatcgagttgcaggttcctcatcatcatctgatgcaatgatgccgtcttcttgttctcgatcatctgttcctgatggcacctggcgacctcagggaattctagttgcacaccttcaggagcatgctttagctgtcaatga
tattgcagtttcacatgatcacaacttttttgtaactgcttccgatgattgtacagttaaaatatgggacagtcgtagactagaaaaagacatatctttccgttcaagattaacttattctctagatgatggccgagcattgcatgtcacaatgtttgcgagtggatcccaagttgctgtggcatcaagcagaggcacca
tcaatgtattttctgttgattatgtaccaaggggagggggcaatgtagagagatactctggtgttttagacattaagaagaaagagacccaggagggagcagtgctaagtatgcaaagctatgctacagaaggccctccaatcatactttacagcactcaatataatgggattcatctgtgggacataagggcacaaaat
aatgcatggacattgaaagcaagtccagaagaaggatatgtttcttcagttgtacttggcccttgtcagaattggcttatgtcaggttcttccagaggtgcgcttaccctctgggatttgcggtttcttatcccagtaaatacatggcagtattccgatggtagccctatagagaaaatgtgtcttctaatgccagctac
aaattcttccccgtctacgacaagtggaccttcagtttatgtagctgcaggatataatcagatggccctttggaatgcaaaggatgggagctgtcatcgggtatcgataagcaaatctttagagaacttgtttgttggagtatttttttttaacattctcacttgaaacttgttctgcagatctttcggctaccatgctc
tggaactggcacagatgttgctgagacccctatttctttagccagttcctcaagtcagatgctttctaaatccgaagtcacagatgaccctcaacgaaatgggaattctaaatacagggtccttgagttgaaagaaccaccatctctaattcctggcatttgttcacttcttccactgcttggtggtgacgtgctaactg
gagggacagatttgaggatacgactgtgggatcacttcagTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCTTGAAGCTTCTGCAACT
GACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTGTACCTTGGCGCTGTAA
TATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATATACACTTTAAAGTTTG
GATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGAAAAGTGTGACGATTTCGCCCGTCCCGCCAAAACTTGG
TCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAACATCTAGATGAATTCAGCACCCTGGAAAACCTCAGGGCATCCAAATTATGCAGGATTAATACTGTTATTTGAGATTCTAAAATTTATATCCCGGATTCCGGCAAATTCGTGTCTGAGAAAACGATTTTCACCGGG
CCAAATCGTAGCAGTTTTAGACAACTCGATTCTGAAATATCTGCTATTACTATCTTACTGTATGTATGAGAGAGAGTGCCCATGAGCGATTGCAAGCATGCAGACTTGATAGATATTTCATAAAAAGCGTGTAGGCACGTGCAAACAGGTATAGAAAAAGATTATGGCGTAAGTATGCATGGATACACACATGAAGGATG
CAGAGACTGTGGAGGAAACTCATTAATTGAGTATTCTCTTGTTGTAGGATTACTGTTCTGTGGGATTCCTTAATATAGGGCATGTGCACAGAGGCACATGTATACACATTTAGAACGAAACTGTTTAATAAAATCTATTCTCCTCGGAAGTTATCTTGTTTAAAGATGACTGTTTTCTG
Intron 5 GTAAATTTGG ... GCTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.94 | 74 | 17 | 9 |
| A2 | 15.97 | 50 | 13 | 6 |
| A3 | 27.91 | 31 | 14 | 10 |
| A4 | 17.99 | 57 | 15 | 10 |
| A5 | 23.68 | 29 | 7 | 11 |
| A6 | 25.93 | 10 | 7 | 0 |
| A7 | 6.67 | 7 | 1 | 0 |
| A8 | 20 | 2 | 1 | 0 |
| A9 | 23.08 | 5 | 2 | 1 |
| A10 | 16.67 | 20 | 6 | 2 |
>TRINITY_DN117741_c0_g2_i8 from sample A3 / Example spliced isoformAAAAAAAACAGGTACAAAGTAGTTATTCTGCTTGGATAGAGACTCGGTACTTGCAGTAGTGTCCCAGAGCGATGAGGAGGCGATGATGTATGGTGCATGGAGGCAGGGGAGCGCAAGGAATATATAAACCAGAGAATCGCAGGGCACAGCAGAATTCAGATCCTCTTTCGTCAGTTCTACTTCTTCCAACCCCAAAACAA
AGACGATGGGGAACAAAATCGCTCGCACAACACAGGTATCGGCCTCCGAGTATTATCTTCAGGACCTGCCTTCTACATACAATTTGGTTCTCAAGGAGGTGCTTGGACGGGGGAGGTTCTTTAAATCCGTTCAGTGCAAACACGATGAAGGCCAAGTCCTCGTCAAGGTCTATTTCAAGCGTGGCGACCCCCTCGATCTC
AAGGAATATGAAAGAAAGTTACATGAGATAAAGGATAGACTGAAAGATATTGATCACTCTCATGTGTGGCCATTTCAATGCTGGTGTGAAACAGATAAAGCAGCATATCTTCTTCGTCAATATTTCTGCAATAATCTGCATGACCGAATAAGCACTCGGCCATTTCTCAGTATGATTGAAAAGAAGTGGCTGGCTTTCCA
GATATTACATGCTTTGAAGCAGTGCCATGAGCGTGGCGTTTGTCATGGTGATATAAAGTGTGAAAATGTACTTGTGACCTCCTGGAATTGGCTGTACCTTGCTGACTTTGCATCTTTCAAGCCAACATATATACCTGATGATGATCCATCAGACTTCTCTTTTTTCTTTGACACTGGTGGAAGACGTCGTTGTTATCTTG
CACCAGAGCGTTTTTATGAACCAGGAAGTGAGGTTCAGATTATTGCAGATGGTGCTTTAAAGCCATCAATGGACATCTTTTCCTTAGGCTGTGTTATTGCAGAGCTTTTTCTCGAGGGGCAGTCACTGTTTGAATTTTCCCAACTGCTTGCTTACCGCAGAGGACAGTATGACCCAGGGCCATACCTGGAGAAGATATCG
GATGATGGAATCCGCAATATGGTTCGTCATATGATCCAATTGGATCCAGAGGCACGCCTGTCTTGTGCAAGTTACTTGCAAAAATATGCGTCCATTGTATTTCCATGCTATTTTTCCCCATTTTTCCATAACTTTTTTTCTTGCCTAGTGCCTCTGGATACGGATGCCAGGGTTGCATTTACAGAGACTGCTTTTGATGA
GATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAAGAACGGACAGTCTCGAGAAACCAACATTGGTTATTCAAATCCAGAGTTGA
CCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATGGGGTCGTGTTCCACAATCTGTGAAGGG
ATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAGTGTACGGTCTGCTGCCTTGGAAACTAT
CAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTGCTGCAACTGCTTCTCGTTTTCTATTAAGATCGCAATCCCTGAATGAGATGAGCA
TTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAGCAAACACCAAATGTTCGGCGTGCATTG
CTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATGTAATGAATTTTTGTTACCAATTCTTCCTGCTTTTTTAAATGACCATGATAAGGAGTTACGAGCTGTATTTTATGAACAGATTATACATGTATGTTATTTTGTTGGCCAAATGAGTGTGGAGGAGTATCTTCTCCCTTATATTGTGCAGGCTCT
AAATGACGATGTTGAAGAAGTCATTGTTAATGCATTGAAGTGTTTGGCACTTCTTTCAAAAGACAAATTGCTCAGAAAAAGATTGCTTCTTGATGCGGTTCAGCAGACTTCTCCTCTACTTTGTCATCCAAGCCAATGGGTTAGGAGGTCAGCTGTCAAATTTATTACAGCAAGCAGTGAGAGTTTACTTCCAGTTGATT
CTCAAGTTTATCTTTCCCCAATTTTACGTCCTTTCCTTCGTCGGGAGCCAACATCTTTAGTTTCTGAGATTGATTTGCTCTCGTGTTTGAAGCCTCCAATGTCAAGAAAGGATTTTCATCACCTTCTAGAAAAAGTAAAGAATTTGCAGTTATCAGAAAAGGACAACAGCCAGAGCAAACTTGGGCAGATTTCGGCTTTG
CCAAAAACAGCAGGGTTTGTTTCCAGCTCATCAAATACAAATGTTGCAAATAAAAGAATCTCTGAAAAGAGATCTTCTATTTCTTCCATATCAACTGATCTGGTATTGACTAAAAGCTGGCCAGGTAAGAAGTCAGATTTGCACGCAAACATGGTAGGATCTCCCAGTCGGAATATAAATTTATCTGAGGCAGAAGATTG
TGTCAAGATGAAAGCCATGGAAAGTTACCTCCAAAATCTGTCCAGTACAATGCAAACTAGAGAGCATAATCGGGAGTTAGAAAGCTTTGAGAGGCTTCAAGTTTCTGCTGTTGGGGTAAGCAGCAGTTCCAACTATGGCCCATCTTATGAAGGCGTTCCAGTATATGTATACCCTCTGAATGAAAGGAAATCTGAAACTG
GAGAAAAAGGGTTGCCATCACTAGGACTGTCTTTGAATGAAGAATGGAACCGAGATTCCGTAGGCCGGCAAGGTCCTTTGCCACCCAAATTTTTTACTGGTTCTAAGTTGGATAGCAGCTTTGCTGCTACAAAACAAGTTAGTAAGGTCATTAGAGATTCAGCTGCAAGAGCACACATGACTGAAGATGCAGCTATTTCT
GATATTGTGGATAAAGTCTCGTCATTATCAGTTGATCGAGTTGCAGGTTCCTCATCATCATCTGATGCAATGATGCCGTCTTCTTGTTCTCGATCATCTGTTCCTGATGGCACCTGGCGACCTCAGGGAATTCTAGTTGCACACCTTCAGGAGCATGCTTTAGCTGTCAATGATATTGCAGTTTCACATGATCACAACTT
TTTTGTAACTGCTTCCGATGATTGTACAGTTAAAATATGGGACAGTCGTAGACTAGAAAAAGACATATCTTTCCGTTCAAGATTAACTTATTCTCTAGATGATGGCCGAGCATTGCATGTCACAATGTTTGCGAGTGGATCCCAAGTTGCTGTGGCATCAAGCAGAGGCACCATCAATGTATTTTCTGTTGATTATGTAC
CAAGGGGAGGGGGCAATGTAGAGAGATACTCTGGTGTTTTAGACATTAAGAAGAAAGAGACCAAGGAGGGAGCAGTGCTAAGTATGCAAAGCTATGCTACAGAAGGCCCTCCAATCATACTTTACAGCACTCAATATAATGGGATTCATCTGTGGGACATAAGGGCACAAAATAATGCATGGACATTGAAAGCAAGTCCA
GAAGAAGGATATGTTTCTTCAGTTGTACTTGGCCCTTGTCAGAATTGGCTTATGTCAGGTTCTTCCAGAGGTGCGCTTACCCTCTGGGATTTGCGGTTTCTTATCCCAGTAAATACATGGCAGTATTCCGATGGTAGCCCTATAGAGAAAATGTGTCTTCTAATGCCAGCTACAAATTCTTCCCCGTCTACGACAAGTGG
ACCTTCAGTTTATGTAGCTGCAGGATATAATCAGATGGCCCTTTGGAATGCAAAGGATGGGAGCTGTCATCGGATCTTTCGGCTACCATGCTCTGGAACTGGCACAGATGTTGCTGAGACCCCTATTTCTTTAGCCAGTTCCTCAAGTCAGATGCTTTCTAAATCCGAAGTCACAGATGACCCTCAACGAAATGGGAATT
CTAAATACAGGGTCCTTGAGTTGAAAGAACCACCATCTCTAATTCCTGGCATTTGTTCACTTCTTCCACTGCTTGGTGGTGACGTGCTAACTGGAGGGACAGATTTGAGGATACGACTGTGGGATCACTTCAGTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGAT
ATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAA
GTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACA
GTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCAT
CAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGATTTCGCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAA
>TRINITY_DN117741_c0_g2_i4 from sample A3 / Example unspliced isoform:AAAAAAAACAGGTACAAAGTAGTTATTCTGCTTGGATAGAGACTCGGTACTTGCAGTAGTGTCCCAGAGCGATGAGGAGGCGATGATGTATGGTGCATGAAGGCAGGGGAACGCAAGGAATATATAAACCAGAGAATCGCAGGGCACAGCAGAATTCAGATCCTCTTTCGTCAGTTCTACTTCTTCCAACCCCAAAACAA
AGACGATGGGGAACAAAATCGCTCGCACAACACAGGTATCGGCCTCCGAGTATTATCTTCAGGACCTGCCTTCTACATACAATTTGGTTCTCAAGGAGGTGCTTGGACGGGGGAGGTTCTTTAAATCCGTTCAGTGCAAACACGATGAAGGCCAAGTCCTCGTCAAGGTCTATTTCAAGCGTGGCGACCCCCTCGATCTC
AAGGAATATGAAAGAAAGTTACATGAGATAAAGGATAGACTGAAAGATATTGATCACTCTCATGTGTGGCCATTTCAATGCTGGTGTGAAACAGATAAAGCAGCATATCTTCTTCGTCAATATTTCTGCAATAATCTGCATGACCGAATAAGCACTCGGCCATTTCTCAGTATGATTGAAAAGAAGTGGCTGGCTTTCCA
GATATTACATGCTTTGAAGCAGTGCCATGAGCGTGGCGTTTGTCATGgtaaatttggttgacctttggattttgcttaatcttaaaatcttaggatgccataccttataaaactccaagtccatggcttttacagGTGATATAAAGTGTGAAAATGTACTTGTGACCTCCTGGAATTGGCTGTACCTTGCTGACTTTGCA
TCTTTCAAGCCAACATATATACCTGATGATGATCCATCAGACTTCTCTTTTTTCTTTGACACTGGTGGAAGACGTCGTTGTTATCTTGCACCAGAGCGTTTTTATGAACCAGGAAGTGAGGTTCAGATTATTGCAGATGGTGCTTTAAAGCCATCAATGGACATCTTTTCCTTAGGCTGTGTTATTGCAGAGCTTTTTCT
CGAGGGGCAGTCACTGTTTGAATTTTCCCAACTGCTTGCTTACCGCAGAGGACAGTATGACCCAGGGCCATACCTGGAGAAGATATCGGATGATGGAATCCGCAATATGGTTCGTCATATGATCCAATTGGATCCAGAGGCACGCCTGTCTTGTGCAAGTTACTTGCAAAAATATGCGTCCATTGTATTTCCATGCTATT
TTTCCCCATTTTTCCATAACTTTTTTTCTTGCCTAGTGCCTCTGGATACGGATGCCAGGGTTGCATTTACAGAGACTGCTTTTGATGAGATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAAT
TTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAAGAACGGACAGTCTCGAGAAACCAACATTGGTTATTCAAATCCAGAGTTGACCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAA
TCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATGGGGTCGTGTTCCACAATCTGTGAAGGGATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATG
AGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAGTGTACGGTCTGCTGCCTTGGAAACTATCAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTC
CGCATTTGTTATGCTAAGAACATATACAAGATTGCTGCAACTGCTTCTCGTTTTCTATTAAGATCGCAATCCCTGAATGAGATGAGCATTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGA
ACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAGCAAACACCAAATGTTCGGCGTGCATTGCTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATGTAATGAATTTTTGTTACCAATTCTTCCTGCTTTTTTAAATGACCATGATAAGGAGTTACGAGCTG
TATTTTATGAACAGATTATACATGTATGTTATTTTGTTGGCCAAATGAGTGTGGAGGAGTATCTTCTCCCTTATATTGTGCAGGCTCTAAATGACGATGTTGAAGAAGTCATTGTTAATGCATTGAAGTGTTTGGCACTTCTTTCAAAAGACAAATTGCTCAGAAAAAGATTGCTTCTTGATGCGGTTCAGCAGACTTCT
CCTCTACTTTGTCATCCAAGCCAATGGGTTAGGAGGTCAGCTGTCAAATTTATTACAGCAAGCAGTGAGAGTTTACTTCCAGTTGATTCTCAAGTTTATCTTTCCCCAATTTTACGTCCTTTCCTTCGTCGGGAGCCAACATCTTTAGTTTCTGAGATTGATTTGCTCTCGTGTTTGAAGCCTCCAATGTCAAGAAAGGA
TTTTCATCACCTTCTAGAAAAAGTAAAGAATTTGCAGTTATCAGAAAAGGACAACAGCCAGAGCAAACTTGGGCAGATTTCGGCTTTGCCAAAAACAGCAGGGTTTGTTTCCAGCTCATCAAATACAAATGTTGCAAATAAAAGAATCTCTGAAAAGAGATCTTCTATTTCTTCCATATCAACTGATCTGGTATTGACTA
AAAGCTGGCCAGGTAAGAAGTCAGATTTGCACGCAAACATGGTAGGATCTCCCAGTCGGAATATAAATTTATCTGAGGCAGAAGATTGTGTCAAGATGAAAGCCATGGAAAGTTACCTCCAAAATCTGTCCAGTACAATGCAAACTAGAGAGCATAATCGGGAGTTAGAAAGCTTTGAGAGGCTTCAAGTTTCTGCTGTT
GGGGTAAGCAGCAGTTCCAACTATGGCCCATCTTATGAAGGCGTTCCAGTATATGTATACCCTCTGAATGAAAGGAAATCTGAAACTGGAGAAAAAGGGTTGCCATCACTAGGACTGTCTTTGAATGAAGAATGGAACCGAGATTCCGTAGGCCGGCAAGGTACTGCACCTTTCCCAATGACTACATTTTCTCGAACACA
GGTTGTTGGATCTGTTTTTTCATCACAGTCGAATTCATCCATGTCTTATGCAGAGCTAATGAACAGATCTCTTATTATGGCAGGTCCTTTGCCACCCAAATTTTTTACTGGTTCTAAGTTGGATAGCAGCTTTGCTGCTACAAAACAAGTTAGTAAGGTCATTAGAGATTCAGCTGCAAGAGCACACATGACTGAAGATG
CAGCTATTTCTGATATTGTGGATAAAGTCTCGTCATTATCAGTTGATCGAGTTGCAGGTTCCTCATCATCATCTGATGCAATGATGCCGTCTTCTTGTTCTCGATCATCTGTTCCTGATGGCACCTGGCGACCTCAGGGAATTCTAGTTGCACACCTTCAGGAGCATGCTTTAGCTGTCAATGATATTGCAGTTTCACAT
GATCACAACTTTTTTGTAACTGCTTCCGATGATTGTACAGTTAAAATATGGGACAGTCGTAGACTAGAAAAAGACATATCTTTCCGTTCAAGATTAACTTATTCTCTAGATGATGGCCGAGCATTGCATGTCACAATGTTTGCGAGTGGATCCCAAGTTGCTGTGGCATCAAGCAGAGGCACCATCAATGTATTTTCTGT
TGATTATGTACCAAGGGGAGGGGGCAATGTAGAGAGATACTCTGGTGTTTTAGACATTAAGAAGAAAGAGACCAAGGAGGGAGCAGTGCTAAGTATGCAAAGCTATGCTACAGAAGGCCCTCCAATCATACTTTACAGCACTCAATATAATGGGATTCATCTGTGGGACATAAGGGCACAAAATAATGCATGGACATTGA
AAGCAAGTCCAGAAGAAGGATATGTTTCTTCAGTTGTACTTGGCCCTTGTCAGAATTGGCTTATGTCAGGTTCTTCCAGAGGTGCGCTTACCCTCTGGGATTTGCGGTTTCTTATCCCAGTAAATACATGGCAGTATTCCGATGGTAGCCCTATAGAGAAAATGTGTCTTCTAATGCCAGCTACAAATTCTTCCCCGTCT
ACGACAAGTGGACCTTCAGTTTATGTAGCTGCAGGATATAATCAGATGGCCCTTTGGAATGCAAAGGATGGGAGCTGTCATCGGGTATCGATAAGCAAATCTTTAGAGAACTTGTTTGTTGGAGTATTTTTTTTTAACATTCTCACTTGAAACTTGTTCTGCAGATCTTTCGGCTACCATGCTCTGGAACTGGCACAGAT
GTTGCTGAGACCCCTATTTCTTTAGCCAGTTCCTCAAGTCAGATGCTTTCTAAATCCGAAGTCACAGATGACCCTCAACGAAATGGGAATTCTAAATACAGGGTCCTTGAGTTGAAAGAACCACCATCTCTAATTCCTGGCATTTGTTCACTTCTTCCACTGCTTGGTGGTGACGTGCTAACTGGAGGGACAGATTTGAG
GATACGACTGTGGGATCACTTCAGTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTC
ACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTAC
ATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAG
TTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGATTTCGCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAA
ATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAA
Intron 6 GTAATGAATT ... ATCACTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 21 | 44 | 40 |
| A2 | 80.56 | 7 | 34 | 24 |
| A3 | 71.43 | 12 | 26 | 34 |
| A4 | 74 | 13 | 37 | 37 |
| A5 | 52.38 | 10 | 6 | 16 |
| A6 | 70.91 | 16 | 11 | 67 |
| A7 | 63.22 | 32 | 10 | 100 |
| A8 | 58.33 | 40 | 14 | 98 |
| A9 | 64.16 | 31 | 29 | 82 |
| A10 | 64.54 | 25 | 20 | 71 |
>TRINITY_DN44679_c1_g1_i8 from sample A8 / Example spliced isoformTGCATTTACAGAGACTGCTTTTGATGAGATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAGGAACGGACAGTCTCGAGAAACCA
ACATTGGTTATTCAAATCCAGAGTTGACCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATG
GGGTCGTGTTCCACAATCTGTGAAGGGATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAG
TGTACGGTCTGCTGCCTTGGAAACTATCAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTTCTGCAACTGCTTCTCGTTTTCTATTAA
GATCGCAATCCCTGAATGAGATGAGCATTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAG
CAAACACCAAATGTTCGGCGTGCATTGCTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTG
ACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGAT
AGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAG
CTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGATTTC
GCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAACATCTAGATGAATTCAGCACCCTGGAAAACCTCAGGGCATCCAAATTATGCAGGATTAATACTGTTATTTGAGATTCTAAAATTTATATCCCGGATTCCGGCAAATTCGTGTCT
GAGAAAACGATTTTCACCGGGCCAAATCGTAGCAGTTTTAGACAACTCGATTCTGAAATATCTGCTATTACTATCTTACTGTATGTATGAGAGAGAGTGCCCATGAGCGATTGCAAGCATGCAGACTTGATAGATATTTCATAAAAAGCGTGTAGGCACGTGCAAACAGGTATAGAAAAAGATTATGGCGTAAGTATGCA
TGGATACACACATGAAGGATGCAGAGACTGTGGAGGAAACTCATTAATTGAGTATTCTCTTGTTGTAGGATTACTGTTCTGTGGGATTCCTTAATATAGGGCATGTGCACAGAGGCACATGTATACACATTTAGAACGAAACTGTTTAATAAAATCTATTCTCCTCGGAAGTTATCTTGTTTAAAGATGACTGTTTTCTG
>TRINITY_DN44679_c1_g1_i3 from sample A8 / Example unspliced isoform:TGCATTTACAGAGACTGCTTTTGATGAGATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAGGAACGGACAGTCTCGAGAAACCA
ACATTGGTTATTCAAATCCAGAGTTGACCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATG
GGGTCGTGTTCCACAATCTGTGAAGGGATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAG
TGTACGGTCTGCTGCCTTGGAAACTATCAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTTCTGCAACTGCTTCTCGTTTTCTATTAA
GATCGCAATCCCTGAATGAGATGAGCATTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAG
CAAACACCAAATGTTCGGCGTGCATTGCTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATgtaatgaatttttgttaccaattcttcctgcttttttaaatgaccatgataaggagttacgagctgtattttatgaacagattatacatgtatgttattttgttggccaaatgagtgtggaggagta
tcttctcccttatattgtgcaggctctaaatgacgatgttgaagaagtcattgttaatgcattgaagtgtttggcacttctttcaaaagacaaattgctcagaaaaagattgcttcttgatgcggttcagcagacttctcctctactttgtcatccaagccaatgggttaggaggtcagctgtcaaatttattacagcaa
gcagtgagagtttacttccagttgattctcaagtttatctttccccaattttacgtcctttccttcgtcgggagccaacatctttagtttctgagattgatttgctctcgtgtttgaagcctccaatgtcaagaaaggattttcatcaccttctagaaaaagtaaagaatttgcagttatcagaaaaggacaacagccag
agcaaacttgggcagatttcggctttgccaaaaacagcagggtttgtttccagctcatcaaatacaaatgttgcaaataaaagaatctctgaaaagagatcttctatttcttccatatcaactgatctggtattgactaaaagctggccaggtaagaagtcagatttgcacgcaaacatggtaggatctcccagtcggaa
tataaatttatctgaggcagaagattgtgtcaagatgaaagccatggaaagttacctccaaaatctgtccagtacaatgcaaactagagagcataatcgggagttagaaagctttgagaggcttcaagtttctgctgttggggtaagcagcagttccaactatggcccatcttatgaaggcgttccagtatatgtatacc
ctctgaatgaaaggaaatctgaaactggagaaaaagggttgccatcactaggactgtctttgaatgaagaatggaaccgagattccgtaggccggcaaggtcctttgccacccaaattttttactggttctaagttggatagcagctttgctgctacaaaacaagttagtaaggtcattagagattcagctgcaagagca
cacatgactgaagatgcagctatttctgatattgtggataaagtctcgtcattatcagttgatcgagttgcaggttcctcatcatcatctgatgcaatgatgccgtcttcttgttctcgatcatctgttcctgatggcacctggcgacctcagggaattctagttgcacaccttcaggagcatgctttagctgtcaatga
tattgcagtttcacatgatcacaacttttttgtaactgcttccgatgattgtacagttaaaatatgggacagtcgtagactagaaaaagacatatctttccgttcaagattaacttattctctagatgatggccgagcattgcatgtcacaatgtttgcgagtggatcccaagttgctgtggcatcaagcagaggcacca
tcaatgtattttctgttgattatgtaccaaggggagggggcaatgtagagagatactctggtgttttagacattaagaagaaagagacccaggagggagcagtgctaagtatgcaaagctatgctacagaaggccctccaatcatactttacagcactcaatataatgggattcatctgtgggacataagggcacaaaat
aatgcatggacattgaaagcaagtccagaagaaggatatgtttcttcagttgtacttggcccttgtcagaattggcttatgtcaggttcttccagaggtgcgcttaccctctgggatttgcggtttcttatcccagtaaatacatggcagtattccgatggtagccctatagagaaaatgtgtcttctaatgccagctac
aaattcttccccgtctacgacaagtggaccttcagtttatgtagctgcaggatataatcagatggccctttggaatgcaaaggatgggagctgtcatcggatctttcggctaccatgctctggaactggcacagatgttgctgagacccctatttctttagccagttcctcaagtcagatgctttctaaatccgaagtca
cagatgaccctcaacgaaatgggaattctaaatacagggtccttgagttgaaagaaccaccatctctaattcctggcatttgttcacttcttccactgcttggtggtgacgtgctaactggagggacagatttgaggatacgactgtgggatcacttcagTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAG
AACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAG
CCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAAC
TTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAAT
CTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGATTTCGCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAACATCTAGATGAATTCAGCACCCTGGAA
AACCTCAGGGCATCCAAATTATGCAGGATTAATACTGTTATTTGAGATTCTAAAATTTATATCCCGGATTCCGGCAAATTCGTGTCTGAGAAAACGATTTTCACCGGGCCAAATCGTAGCAGTTTTAGACAACTCGATTCTGAAATATCTGCTATTACTATCTTACTGTATGTATGAGAGAGAGTGCCCATGAGCGATTG
CAAGCATGCAGACTTGATAGATATTTCATAAAAAGCGTGTAGGCACGTGCAAACAGGTATAGAAAAAGATTATGGCGTAAGTATGCATGGATACACACATGAAGGATGCAGAGACTGTGGAGGAAACTCATTAATTGAGTATTCTCTTGTTGTAGGATTACTGTTCTGTGGGATTCCTTAATATAGGGCATGTGCACAGA
GGCACATGTATACACATTTAGAACGAAACTGTTTAATAAAATCTATTCTCCTCGGAAGTTATCTTGTTTAAAGATGACTGTTTTCTG
Intron 7 GTAATGAATT ... ATCACTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 21 | 44 | 40 |
| A2 | 80.56 | 7 | 34 | 24 |
| A3 | 71.43 | 12 | 26 | 34 |
| A4 | 74 | 13 | 37 | 37 |
| A5 | 52.38 | 10 | 6 | 16 |
| A6 | 70.91 | 16 | 11 | 67 |
| A7 | 63.22 | 32 | 10 | 100 |
| A8 | 58.33 | 40 | 14 | 98 |
| A9 | 64.16 | 31 | 29 | 82 |
| A10 | 64.54 | 25 | 20 | 71 |
>TRINITY_DN44679_c1_g1_i4 from sample A8 / Example spliced isoformTGCATTTACAGAGACTGCTTTTGATGAGATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAGGAACGGACAGTCTCGAGAAACCA
ACATTGGTTATTCAAATCCAGAGTTGACCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATG
GGGTCGTGTTCCACAATCTGTGAAGGGATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAG
TGTACGGTCTGCTGCCTTGGAAACTATCAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTTCTGCAACTGCTTCTCGTTTTCTATTAA
GATCGCAATCCCTGAATGAGATGAGCATTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAG
CAAACACCAAATGTTCGGCGTGCATTGCTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTG
ACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGAT
AGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAG
CTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGAAAAG
TGTGACGATTTCGCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAACATCTAGATGAATTCAGCACCCTGGAAAACCTCAGGGCATCCAAATTATGCAGGATTAATACTGTTATTTGAGATTCTAAAATTTATATCCCGGATTCCGGC
AAATTCGTGTCTGAGAAAACGATTTTCACCGGGCCAAATCGTAGCAGTTTTAGACAACTCGATTCTGAAATATCTGCTATTACTATCTTACTGTATGTATGAGAGAGAGTGCCCATGAGCGATTGCAAGCATGCAGACTTGATAGATATTTCATAAAAAGCGTGTAGGCACGTGCAAACAGGTATAGAAAAAGATTATGG
CGTAAGTATGCATGGATACACACATGAAGGATGCAGAGACTGTGGAGGAAACTCATTAATTGAGTATTCTCTTGTTGTAGGATTACTGTTCTGTGGGATTCCTTAATATAGGGCATGTGCACAGAGGCACATGTATACACATTTAGAACGAAACTGTTTAATAAAATCTATTCTCCTCGGAAGTTATCTTGTTTAAAGAT
GACTGTTTTCTG
>TRINITY_DN44679_c1_g1_i2 from sample A8 / Example unspliced isoform:TGCATTTACAGAGACTGCTTTTGATGAGATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAGGAACGGACAGTCTCGAGAAACCA
ACATTGGTTATTCAAATCCAGAGTTGACCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATG
GGGTCGTGTTCCACAATCTGTGAAGGGATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAG
TGTACGGTCTGCTGCCTTGGAAACTATCAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTTCTGCAACTGCTTCTCGTTTTCTATTAA
GATCGCAATCCCTGAATGAGATGAGCATTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAG
CAAACACCAAATGTTCGGCGTGCATTGCTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATgtaatgaatttttgttaccaattcttcctgcttttttaaatgaccatgataaggagttacgagctgtattttatgaacagattatacatgtatgttattttgttggccaaatgagtgtggaggagta
tcttctcccttatattgtgcaggctctaaatgacgatgttgaagaagtcattgttaatgcattgaagtgtttggcacttctttcaaaagacaaattgctcagaaaaagattgcttcttgatgcggttcagcagacttctcctctactttgtcatccaagccaatgggttaggaggtcagctgtcaaatttattacagcaa
gcagtgagagtttacttccagttgattctcaagtttatctttccccaattttacgtcctttccttcgtcgggagccaacatctttagtttctgagattgatttgctctcgtgtttgaagcctccaatgtcaagaaaggattttcatcaccttctagaaaaagtaaagaatttgcagttatcagaaaaggacaacagccag
agcaaacttgggcagatttcggctttgccaaaaacagcagggtttgtttccagctcatcaaatacaaatgttgcaaataaaagaatctctgaaaagagatcttctatttcttccatatcaactgatctggtattgactaaaagctggccaggtaagaagtcagatttgcacgcaaacatggtaggatctcccagtcggaa
tataaatttatctgaggcagaagattgtgtcaagatgaaagccatggaaagttacctccaaaatctgtccagtacaatgcaaactagagagcataatcgggagttagaaagctttgagaggcttcaagtttctgctgttggggtaagcagcagttccaactatggcccatcttatgaaggcgttccagtatatgtatacc
ctctgaatgaaaggaaatctgaaactggagaaaaagggttgccatcactaggactgtctttgaatgaagaatggaaccgagattccgtaggccggcaaggtactgcacctttcccaatgactacattttctcgaacacaggttgttggatctgttttttcatcacagtcgaattcatccatgtcttatgcagagctaatg
aacagatctcttattatggcaggtcctttgccacccaaattttttactggttctaagttggatagcagctttgctgctacaaaacaagttagtaaggtcattagagattcagctgcaagagcacacatgactgaagatgcagctatttctgatattgtggataaagtctcgtcattatcagttgatcgagttgcaggttc
ctcatcatcatctgatgcaatgatgccgtcttcttgttctcgatcatctgttcctgatggcacctggcgacctcagggaattctagttgcacaccttcaggagcatgctttagctgtcaatgatattgcagtttcacatgatcacaacttttttgtaactgcttccgatgattgtacagttaaaatatgggacagtcgta
gactagaaaaagacatatctttccgttcaagattaacttattctctagatgatggccgagcattgcatgtcacaatgtttgcgagtggatcccaagttgctgtggcatcaagcagaggcaccatcaatgtattttctgttgattatgtaccaaggggagggggcaatgtagagagatactctggtgttttagacattaag
aagaaagagacccaggagggagcagtgctaagtatgcaaagctatgctacagaaggccctccaatcatactttacagcactcaatataatgggattcatctgtgggacataagggcacaaaataatgcatggacattgaaagcaagtccagaagaaggatatgtttcttcagttgtacttggcccttgtcagaattggct
tatgtcaggttcttccagaggtgcgcttaccctctgggatttgcggtttcttatcccagtaaatacatggcagtattccgatggtagccctatagagaaaatgtgtcttctaatgccagctacaaattcttccccgtctacgacaagtggaccttcagtttatgtagctgcaggatataatcagatggccctttggaatg
caaaggatgggagctgtcatcgggtatcgataagcaaatctttagagaacttgtttgttggagtatttttttttaacattctcacttgaaacttgttctgcagatctttcggctaccatgctctggaactggcacagatgttgctgagacccctatttctttagccagttcctcaagtcagatgctttctaaatccgaag
tcacagatgaccctcaacgaaatgggaattctaaatacagggtccttgagttgaaagaaccaccatctctaattcctggcatttgttcacttcttccactgcttggtggtgacgtgctaactggagggacagatttgaggatacgactgtgggatcacttcagTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACA
AAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAG
CAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGC
AACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTT
AATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGAAAAGTGTGACGATTTCGCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAACATCTAGATGAA
TTCAGCACCCTGGAAAACCTCAGGGCATCCAAATTATGCAGGATTAATACTGTTATTTGAGATTCTAAAATTTATATCCCGGATTCCGGCAAATTCGTGTCTGAGAAAACGATTTTCACCGGGCCAAATCGTAGCAGTTTTAGACAACTCGATTCTGAAATATCTGCTATTACTATCTTACTGTATGTATGAGAGAGAGT
GCCCATGAGCGATTGCAAGCATGCAGACTTGATAGATATTTCATAAAAAGCGTGTAGGCACGTGCAAACAGGTATAGAAAAAGATTATGGCGTAAGTATGCATGGATACACACATGAAGGATGCAGAGACTGTGGAGGAAACTCATTAATTGAGTATTCTCTTGTTGTAGGATTACTGTTCTGTGGGATTCCTTAATATA
GGGCATGTGCACAGAGGCACATGTATACACATTTAGAACGAAACTGTTTAATAAAATCTATTCTCCTCGGAAGTTATCTTGTTTAAAGATGACTGTTTTCTG
Intron 8 GTAATGAATT ... ATCACTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 21 | 44 | 40 |
| A2 | 80.56 | 7 | 34 | 24 |
| A3 | 71.43 | 12 | 26 | 34 |
| A4 | 74 | 13 | 37 | 37 |
| A5 | 52.38 | 10 | 6 | 16 |
| A6 | 70.91 | 16 | 11 | 67 |
| A7 | 63.22 | 32 | 10 | 100 |
| A8 | 58.33 | 40 | 14 | 98 |
| A9 | 64.16 | 31 | 29 | 82 |
| A10 | 64.54 | 25 | 20 | 71 |
>TRINITY_DN44679_c1_g1_i8 from sample A8 / Example spliced isoformTGCATTTACAGAGACTGCTTTTGATGAGATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAGGAACGGACAGTCTCGAGAAACCA
ACATTGGTTATTCAAATCCAGAGTTGACCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATG
GGGTCGTGTTCCACAATCTGTGAAGGGATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAG
TGTACGGTCTGCTGCCTTGGAAACTATCAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTTCTGCAACTGCTTCTCGTTTTCTATTAA
GATCGCAATCCCTGAATGAGATGAGCATTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAG
CAAACACCAAATGTTCGGCGTGCATTGCTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTG
ACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGAT
AGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAG
CTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGATTTC
GCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAACATCTAGATGAATTCAGCACCCTGGAAAACCTCAGGGCATCCAAATTATGCAGGATTAATACTGTTATTTGAGATTCTAAAATTTATATCCCGGATTCCGGCAAATTCGTGTCT
GAGAAAACGATTTTCACCGGGCCAAATCGTAGCAGTTTTAGACAACTCGATTCTGAAATATCTGCTATTACTATCTTACTGTATGTATGAGAGAGAGTGCCCATGAGCGATTGCAAGCATGCAGACTTGATAGATATTTCATAAAAAGCGTGTAGGCACGTGCAAACAGGTATAGAAAAAGATTATGGCGTAAGTATGCA
TGGATACACACATGAAGGATGCAGAGACTGTGGAGGAAACTCATTAATTGAGTATTCTCTTGTTGTAGGATTACTGTTCTGTGGGATTCCTTAATATAGGGCATGTGCACAGAGGCACATGTATACACATTTAGAACGAAACTGTTTAATAAAATCTATTCTCCTCGGAAGTTATCTTGTTTAAAGATGACTGTTTTCTG
>TRINITY_DN44679_c1_g1_i10 from sample A8 / Example unspliced isoform:TGCATTTACAGAGACTGCTTTTGATGAGATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAGGAACGGACAGTCTCGAGAAACCA
ACATTGGTTATTCAAATCCAGAGTTGACCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATG
GGGTCGTGTTCCACAATCTGTGAAGGGATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAG
TGTACGGTCTGCTGCCTTGGAAACTATCAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTTCTGCAACTGCTTCTCGTTTTCTATTAA
GATCGCAATCCCTGAATGAGATGAGCATTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAG
CAAACACCAAATGTTCGGCGTGCATTGCTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATgtaatgaatttttgttaccaattcttcctgcttttttaaatgaccatgataaggagttacgagctgtattttatgaacagattatacatgtatgttattttgttggccaaatgagtgtggaggagta
tcttctcccttatattgtgcaggctctaaatgacgatgttgaagaagtcattgttaatgcattgaagtgtttggcacttctttcaaaagacaaattgctcagaaaaagattgcttcttgatgcggttcagcagacttctcctctactttgtcatccaagccaatgggttaggaggtcagctgtcaaatttattacagcaa
gcagtgagagtttacttccagttgattctcaagtttatctttccccaattttacgtcctttccttcgtcgggagccaacatctttagtttctgagattgatttgctctcgtgtttgaagcctccaatgtcaagaaaggattttcatcaccttctagaaaaagtaaagaatttgcagttatcagaaaaggacaacagccag
agcaaacttgggcagatttcggctttgccaaaaacagcagggtttgtttccagctcatcaaatacaaatgttgcaaataaaagaatctctgaaaagagatcttctatttcttccatatcaactgatctggtattgactaaaagctggccaggtaagaagtcagatttgcacgcaaacatggtaggatctcccagtcggaa
tataaatttatctgaggcagaagattgtgtcaagatgaaagccatggaaagttacctccaaaatctgtccagtacaatgcaaactagagagcataatcgggagttagaaagctttgagaggcttcaagtttctgctgttggggtaagcagcagttccaactatggcccatcttatgaaggcgttccagtatatgtatacc
ctctgaatgaaaggaaatctgaaactggagaaaaagggttgccatcactaggactgtctttgaatgaagaatggaaccgagattccgtaggccggcaaggtactgcacctttcccaatgactacattttctcgaacacaggttgttggatctgttttttcatcacagtcgaattcatccatgtcttatgcagagctaatg
aacagatctcttattatggcaggtcctttgccacccaaattttttactggttctaagttggatagcagctttgctgctacaaaacaagttagtaaggtcattagagattcagctgcaagagcacacatgactgaagatgcagctatttctgatattgtggataaagtctcgtcattatcagttgatcgagttgcaggttc
ctcatcatcatctgatgcaatgatgccgtcttcttgttctcgatcatctgttcctgatggcacctggcgacctcagggaattctagttgcacaccttcaggagcatgctttagctgtcaatgatattgcagtttcacatgatcacaacttttttgtaactgcttccgatgattgtacagttaaaatatgggacagtcgta
gactagaaaaagacatatctttccgttcaagattaacttattctctagatgatggccgagcattgcatgtcacaatgtttgcgagtggatcccaagttgctgtggcatcaagcagaggcaccatcaatgtattttctgttgattatgtaccaaggggagggggcaatgtagagagatactctggtgttttagacattaag
aagaaagagacccaggagggagcagtgctaagtatgcaaagctatgctacagaaggccctccaatcatactttacagcactcaatataatgggattcatctgtgggacataagggcacaaaataatgcatggacattgaaagcaagtccagaagaaggatatgtttcttcagttgtacttggcccttgtcagaattggct
tatgtcaggttcttccagaggtgcgcttaccctctgggatttgcggtttcttatcccagtaaatacatggcagtattccgatggtagccctatagagaaaatgtgtcttctaatgccagctacaaattcttccccgtctacgacaagtggaccttcagtttatgtagctgcaggatataatcagatggccctttggaatg
caaaggatgggagctgtcatcggatctttcggctaccatgctctggaactggcacagatgttgctgagacccctatttctttagccagttcctcaagtcagatgctttctaaatccgaagtcacagatgaccctcaacgaaatgggaattctaaatacagggtccttgagttgaaagaaccaccatctctaattcctggc
atttgttcacttcttccactgcttggtggtgacgtgctaactggagggacagatttgaggatacgactgtgggatcacttcagTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATC
TGCCAAGTTGACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCT
TCTCTATGATAGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGA
AAAAATGCAGCTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTG
TGACGATTTCGCCCGTCCCGCCAAAACTTGGTCGGAATCCGGGGATATGAAATCTAAAAATCTGGCTATTTGTATTGATTAAATCGTTTTTCTGAACATCTAGATGAATTCAGCACCCTGGAAAACCTCAGGGCATCCAAATTATGCAGGATTAATACTGTTATTTGAGATTCTAAAATTTATATCCCGGATTCCGGCAA
ATTCGTGTCTGAGAAAACGATTTTCACCGGGCCAAATCGTAGCAGTTTTAGACAACTCGATTCTGAAATATCTGCTATTACTATCTTACTGTATGTATGAGAGAGAGTGCCCATGAGCGATTGCAAGCATGCAGACTTGATAGATATTTCATAAAAAGCGTGTAGGCACGTGCAAACAGGTATAGAAAAAGATTATGGCG
TAAGTATGCATGGATACACACATGAAGGATGCAGAGACTGTGGAGGAAACTCATTAATTGAGTATTCTCTTGTTGTAGGATTACTGTTCTGTGGGATTCCTTAATATAGGGCATGTGCACAGAGGCACATGTATACACATTTAGAACGAAACTGTTTAATAAAATCTATTCTCCTCGGAAGTTATCTTGTTTAAAGATGA
CTGTTTTCTG
Intron 9 GTATCGATAA ... TGTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.39 | 18.8 | 17 | 13 |
| A2 | 42.51 | 24.5 | 15 | 21 |
| A3 | 32.59 | 33.4 | 16 | 16 |
| A4 | 35.47 | 22.8 | 13 | 12 |
| A5 | 35.22 | 12.9 | 10 | 4 |
| A6 | 26.07 | 50.1 | 15 | 20 |
| A7 | 25.05 | 83.8 | 24 | 31.7 |
| A8 | 25.64 | 70 | 26 | 22 |
| A9 | 35.03 | 43.4 | 19 | 27.6 |
| A10 | 27.51 | 48.8 | 26 | 11 |
>TRINITY_DN127912_c0_g1_i2 from sample A1 / Example spliced isoformAAAAAAAACAGGTACAAAGTAGTTATTCTGCTTGGATAGAGACTCGGTACTTGCAGTAGTGTCCCAGAGCGATGAGGAGGCGATGATGTATGGTGCATGGAGGCAGGGGAGCGCAAGGAATATATAAACCAGAGAATCGCAGGGCACAGCAGAATTCAAATCCTCTTTCGTCAGTTCTACTTCTTCCAACCCCAAAACAA
AGACGATGGGGAACAAAATCGCTCGCACAACACAGGTATCGGCCTCCGAGTATTATCTTCAGGACCTGCCTTCTACATACAATTTGGTTCTCAAGGAGGTGCTTGGACGGGGGAGGTTCTTTAAATCCGTTCAGTGCAAACACGATGAAGGCCAAGTCCTCGTCAAGGTCTATTTCAAGCGTGGCGACCCCCTCGATCTC
AAGGAATATGAAAGAAAGTTACATGAGATAAAGGATAGACTGAAAGATATTGATCACTCTCATGTGTGGCCATTTCAATGCTGGTGTGAAACAGATAAAGCAGCATATCTTCTTCGTCAATATTTCTGCAATAATCTGCATGACCGAATAAGCACTCGGCCATTTCTCAGTATGATTGAAAAGAAGTGGCTGGCTTTCCA
GATATTACATGCTTTGAAGCAGTGCCATGAGCGTGGCGTTTGTCATGGTGATATAAAGTGTGAAAATGTACTTGTGACCTCCTGGAATTGGCTGTACCTTGCTGACTTTGCATCTTTCAAGCCAACATATATACCTGATGATGATCCATCAGACTTCTCTTTTTTCTTTGACACTGGTGGAAGACGTCGTTGTTATCTTG
CACCAGAGCGTTTTTATGAACCAGGAAGTGAGGTTCAGATTATTGCAGATGGTGCTTTAAAGCCATCAATGGACATCTTTTCCTTAGGCTGTGTTATTGCAGAGCTTTTTCTCGAGGGGCAGTCACTGTTTGAATTTTCCCAACTGCTTGCTTACCGCAGAGGACAGTATGACCCAGGGCCATACCTGGAGAAGATATCG
GATGATGGAATCCGCAATATGGTTCGTCATATGATCCAATTGGATCCAGAGGCACGCCTGTCTTGTGCAAGTTACTTGCAAAAATATGCGTCCATTGTATTTCCATGCTATTTTTCCCCATTTTTCCATAACTTTTTTTCTTGCCTAGTGCCTCTGGATACGGATGCCAGGGTTGCATTTACAGAGACTGCTTTTGATGA
GATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAAGAACGGACAGTCTCGAGAAACCAACATTGGTTATTCAAATCCAGAGTTGA
CCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATGGGGTCGTGTTCCACAATCTGTGAAGGG
ATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAGTGTACGGTCTGCTGCCTTGGAAACTAT
CAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTGCTGCAACTGCTTCTCGTTTTCTATTAAGATCGCAATCCCTGAATGAGATGAGCA
TTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAGCAGACACCAAATGTTCGGCGTGCATTG
CTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATGTAATGAATTTTTGTTACCAATTCTTCCTGCTTTTTTAAATGACCATGATAAGGAGTTACGAGCTGTATTTTATGAACAGATTATACATGTATGTTATTTTGTTGGCCAAATGAGTGTGGAGGAGTATCTTCTCCCTTATATTGTGCAGGCTCT
AAATGACGATGTTGAAGAAGTCATTGTTAATGCATTGAAGTGTTTGGCACTTCTTTCAAAAGACAAATTGCTCAGAAAAAGATTGCTTCTTGATGCGGTTCAGCAGACTTCTCCTCTACTTTGTCATCCAAGCCAATGGGTTAGGAGGTCAGCTGTCAAATTTATTACAGCAAGCAGTGAGAGTTTACTTCCAGTTGATT
CTCAAGTTTATCTTTCCCCAATTTTACGTCCTTTCCTTCGTCGGGAGCCAACATCTTTAGTTTCTGAGATTGATTTGCTCTCGTGTTTGAAGCCTCCAATGTCAAGAAAGGATTTTCATCACCTTCTAGAAAAAGTAAAGAATTTGCAGTTATCAGAAAAGGACAACAGCCAGAGCAAACTTGGGCAGATTTCGGCTTTG
CCAAAAACAGCAGGGTTTGTTTCCAGCTCATCAAATACAAATGTTGCAAATAAAAGAATCTCTGAAAAGAGATCTTCTATTTCTTCCATATCAACTGATCTGGTATTGACTAAAAGCTGGCCAGGTAAGAAGTCAGATTTGCACGCAAACATGGTAGGATCTCCCAGTCGGAATATAAATTTATCTGAGGCAGAAGATTG
TGTCAAGATGAAAGCCATGGAAAGTTACCTCCAAAATCTGTCCAGTACAATGCAAACTAGAGAGCATAATCGGGAGTTAGAAAGCTTTGAGAGGCTTCAAGTTTCTGCTGTTGGGGTAAGCAGCAGTTCCAACTATGGCCCATCTTATGAAGGCGTTCCAGTATATGTATACCCTCTGAATGAAAGGAAATCTGAAACTG
GAGAAAAAGGGTTGCCATCACTAGGACTGTCTTTGAATGAAGAATGGAACCGAGATTCCGTAGGCCGGCAAGGTACTGCACCTTTCCCAATGACTACATTTTCTCGAACACAGGTTGTTGGATCTGTTTTTTCATCACAGTCGAATTCATCCATGTCTTATGCAGAGCTAATGAACAGATCTCTTATTATGGCAGGTCCT
TTGCCACCCAAATTTTTTACTGGTTCTAAGTTGGATAGCAGCTTTGCTGCTACAAAACAAGTTAGTAAGGTCATTAGAGATTCAGCTGCAAGAGCACACATGACTGAAGATGCAGCTATTTCTGATATTGTGGATAAAGTCTCGTCATTATCAGTTGATCGAGTTGCAGGTTCCTCATCATCATCTGATGCAATGATGCC
GTCTTCTTGTTCTCGATCATCTGTTCCTGATGGCACCTGGCGACCTCAGGGAATTCTAGTTGCACACCTTCAGGAGCATGCTTTAGCTGTCAATGATATTGCAGTTTCACATGATCACAACTTTTTTGTAACTGCTTCCGATGATTGTACAGTTAAAATATGGGACAGTCGTAGACTAGAAAAAGACATATCTTTCCGTT
CAAGATTAACTTATTCTCTAGATGATGGCCGAGCATTGCATGTCACAATGTTTGCGAGTGGATCCCAAGTTGCTGTGGCATCAAGCAGAGGCACCATCAATGTATTTTCTGTTGATTATGTACCAAGGGGAGGGGGCAATGTAGAGAGATACTCTGGTGTTTTAGACATTAAGAAGAAAGAGACCCAGGAGGGAGCAGTG
CTAAGTATGCAAAGCTATGCTACAGAAGGCCCTCCAATCATACTTTACAGCACTCAATATAATGGGATTCATCTGTGGGACATAAGGGCACAAAATAATGCATGGACATTGAAAGCAAGTCCAGAAGAAGGATATGTTTCTTCAGTTGTACTTGGCCCTTGTCAGAATTGGCTTATGTCAGGTTCTTCCAGAGGTGCGCT
TACCCTCTGGGATTTGCGGTTTCTTATCCCAGTAAATACATGGCAGTATTCCGATGGTAGCCCTATAGAGAAAATGTGTCTTCTAATGCCAGCTACAAATTCTTCCCCGTCTACGACAAGTGGACCTTCAGTTTATGTAGCTGCAGGATATAATCAGATGGCCCTTTGGAATGCAAAGGATGGGAGCTGTCATCGGATCT
TTCGGCTACCATGCTCTGGAACTGGCACAGATGTTGCTGAGACCCCTATTTCTTTAGCCAGTTCCTCAAGTCAGATGCTTTCTAAATCCGAAGTCACAGATGACCCTCAACGAAATGGGAATTCTAAATACAGGGTCCTTGAGTTGAAAGAACCACCATCTCTAATTCCTGGCATTTGTTCACTTCTTCCACTGCTTGGT
GGTGACGTGCTAACTGGAGGGACAGATTTGAGGATACGACTGTGGGATCACTTCAGTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCT
TGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGCATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTG
TACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACATTAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATA
TACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACATAGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGAAAAGTGTG
>TRINITY_DN127912_c0_g1_i4 from sample A1 / Example unspliced isoform:AAAAAAAACAGGTACAAAGTAGTTATTCTGCTTGGATAGAGACTCGGTACTTGCAGTAGTGTCCCAGAGCGATGAGGAGGCGATGATGTATGGTGCATGGAGGCAGGGGAGCGCAAGGAATATATAAACCAGAGAATCGCAGGGCACAGCAGAATTCAAATCCTCTTTCGTCAGTTCTACTTCTTCCAACCCCAAAACAA
AGACGATGGGGAACAAAATCGCTCGCACAACACAGGTATCGGCCTCCGAGTATTATCTTCAGGACCTGCCTTCTACATACAATTTGGTTCTCAAGGAGGTGCTTGGACGGGGGAGGTTCTTTAAATCCGTTCAGTGCAAACACGATGAAGGCCAAGTCCTCGTCAAGGTCTATTTCAAGCGTGGCGACCCCCTCGATCTC
AAGGAATATGAAAGAAAGTTACATGAGATAAAGGATAGACTGAAAGATATTGATCACTCTCATGTGTGGCCATTTCAATGCTGGTGTGAAACAGATAAAGCAGCATATCTTCTTCGTCAATATTTCTGCAATAATCTGCATGACCGAATAAGCACTCGGCCATTTCTCAGTATGATTGAAAAGAAGTGGCTGGCTTTCCA
GATATTACATGCTTTGAAGCAGTGCCATGAGCGTGGCGTTTGTCATGGTGATATAAAGTGTGAAAATGTACTTGTGACCTCCTGGAATTGGCTGTACCTTGCTGACTTTGCATCTTTCAAGCCAACATATATACCTGATGATGATCCATCAGACTTCTCTTTTTTCTTTGACACTGGTGGAAGACGTCGTTGTTATCTTG
CACCAGAGCGTTTTTATGAACCAGGAAGTGAGGTTCAGATTATTGCAGATGGTGCTTTAAAGCCATCAATGGACATCTTTTCCTTAGGCTGTGTTATTGCAGAGCTTTTTCTCGAGGGGCAGTCACTGTTTGAATTTTCCCAACTGCTTGCTTACCGCAGAGGACAGTATGACCCAGGGCCATACCTGGAGAAGATATCG
GATGATGGAATCCGCAATATGGTTCGTCATATGATCCAATTGGATCCAGAGGCACGCCTGTCTTGTGCAAGTTACTTGCAAAAATATGCGTCCATTGTATTTCCATGCTATTTTTCCCCATTTTTCCATAACTTTTTTTCTTGCCTAGTGCCTCTGGATACGGATGCCAGGGTTGCATTTACAGAGACTGCTTTTGATGA
GATCCTGAGACAACTGACATCATCTTCATCAGAGGCGGGAAATAATGCAAAGAATAAAGCATTGAATGCTGAAGCCAATGAAATGGCTACTTCATCTAGTACTAATCAAAATTTTAGATTATATGAGAATTTTAAAGGCTCATTCAACAAGAACGGACAGTCTCGAGAAACCAACATTGGTTATTCAAATCCAGAGTTGA
CCTCTGATATTAGTGCTCTCCAGAGAGACTTAGATCAACAGAACTTTAGACGGGGTAAAAATAATACAATTGATTCTCTGCGAATAAATGCTGAGAGAACTTTGACAGATAATCTTTATAAAAAGAAAGTAAATGAGGTGGGATCACAGAGAAGCCAGGATGAGGTTTTTATGGGGTCGTGTTCCACAATCTGTGAAGGG
ATGGTGTTGATTGCTTCCTTTTTATGTTCATGCCTCAGAAGTGTTATGCTTACACGGTCAAGGAGGCGTGCTATACTGTTATTGCGACAGTGTTCATATTATATTGGTGATGAGGACCGGTTGCAACTTGTTCTTCCTTATGTTGTTGCTATGCTGCCTGATCCAGCTCCTAGTGTACGGTCTGCTGCCTTGGAAACTAT
CAGTGATGTTCTATCATTAGTCCAGGAGTTCCCCCCTAGTGATGCAAAGATATTTCCAGAGTATATTCTTCCTATGCTCTCAATGTTACCAGATGACCCTGAGGAAAGTGTCCGCATTTGTTATGCTAAGAACATATACAAGATTGCTGCAACTGCTTCTCGTTTTCTATTAAGATCGCAATCCCTGAATGAGATGAGCA
TTTTAGATCGATCAAGTGTTTCTAATAAGGCTGTCAAAGTTCCAATGGCCCCATCTCAAGCTCTGGGGTCACAAACACCTGTGTATCAACAGAATAGTAACTGCAATGCAGAACTTGCAGAGTTACGGCAGAGGATAGCTCATGTTATACTAGAGTTGGTGATGGGACAGAAGCAGACACCAAATGTTCGGCGTGCATTG
CTGCTGCATGTAAAAGAACTATGTGATTTCTTTGGGGAGAAGCAATGTAATGAATTTTTGTTACCAATTCTTCCTGCTTTTTTAAATGACCATGATAAGGAGTTACGAGCTGTATTTTATGAACAGATTATACATGTATGTTATTTTGTTGGCCAAATGAGTGTGGAGGAGTATCTTCTCCCTTATATTGTGCAGGCTCT
AAATGACGATGTTGAAGAAGTCATTGTTAATGCATTGAAGTGTTTGGCACTTCTTTCAAAAGACAAATTGCTCAGAAAAAGATTGCTTCTTGATGCGGTTCAGCAGACTTCTCCTCTACTTTGTCATCCAAGCCAATGGGTTAGGAGGTCAGCTGTCAAATTTATTACAGCAAGCAGTGAGAGTTTACTTCCAGTTGATT
CTCAAGTTTATCTTTCCCCAATTTTACGTCCTTTCCTTCGTCGGGAGCCAACATCTTTAGTTTCTGAGATTGATTTGCTCTCGTGTTTGAAGCCTCCAATGTCAAGAAAGGATTTTCATCACCTTCTAGAAAAAGTAAAGAATTTGCAGTTATCAGAAAAGGACAACAGCCAGAGCAAACTTGGGCAGATTTCGGCTTTG
CCAAAAACAGCAGGGTTTGTTTCCAGCTCATCAAATACAAATGTTGCAAATAAAAGAATCTCTGAAAAGAGATCTTCTATTTCTTCCATATCAACTGATCTGGTATTGACTAAAAGCTGGCCAGGTAAGAAGTCAGATTTGCACGCAAACATGGTAGGATCTCCCAGTCGGAATATAAATTTATCTGAGGCAGAAGATTG
TGTCAAGATGAAAGCCATGGAAAGTTACCTCCAAAATCTGTCCAGTACAATGCAAACTAGAGAGCATAATCGGGAGTTAGAAAGCTTTGAGAGGCTTCAAGTTTCTGCTGTTGGGGTAAGCAGCAGTTCCAACTATGGCCCATCTTATGAAGGCGTTCCAGTATATGTATACCCTCTGAATGAAAGGAAATCTGAAACTG
GAGAAAAAGGGTTGCCATCACTAGGACTGTCTTTGAATGAAGAATGGAACCGAGATTCCGTAGGCCGGCAAGGTCCTTTGCCACCCAAATTTTTTACTGGTTCTAAGTTGGATAGCAGCTTTGCTGCTACAAAACAAGTTAGTAAGGTCATTAGAGATTCAGCTGCAAGAGCACACATGACTGAAGATGCAGCTATTTCT
GATATTGTGGATAAAGTCTCGTCATTATCAGTTGATCGAGTTGCAGGTTCCTCATCATCATCTGATGCAATGATGCCGTCTTCTTGTTCTCGATCATCTGTTCCTGATGGCACCTGGCGACCTCAGGGAATTCTAGTTGCACACCTTCAGGAGCATGCTTTAGCTGTCAATGATATTGCAGTTTCACATGATCACAACTT
TTTTGTAACTGCTTCCGATGATTGTACAGTTAAAATATGGGACAGTCGTAGACTAGAAAAAGACATATCTTTCCGTTCAAGATTAACTTATTCTCTAGATGATGGCCGAGCATTGCATGTCACAATGTTTGCGAGTGGATCCCAAGTTGCTGTGGCATCAAGCAGAGGCACCATCAATGTATTTTCTGTTGATTATGTAC
CAAGGGGAGGGGGCAATGTAGAGAGATACTCTGGTGTTTTAGACATTAAGAAGAAAGAGACCCAGGAGGGAGCAGTGCTAAGTATGCAAAGCTATGCTACAGAAGGCCCTCCAATCATACTTTACAGCACTCAATATAATGGGATTCATCTGTGGGACATAAGGGCACAAAATAATGCATGGACATTGAAAGCAAGTCCA
GAAGAAGGATATGTTTCTTCAGTTGTACTTGGCCCTTGTCAGAATTGGCTTATGTCAGGTTCTTCCAGAGGTGCGCTTACCCTCTGGGATTTGCGGTTTCTTATCCCAGTAAATACATGGCAGTATTCCGATGGTAGCCCTATAGAGAAAATGTGTCTTCTAATGCCAGCTACAAATTCTTCCCCGTCTACGACAAGTGG
ACCTTCAGTTTATGTAGCTGCAGGATATAATCAGATGGCCCTTTGGAATGCAAAGGATGGGAGCTGTCATCGGgtatcgataagcaaatctttagagaacttgtttgttggagtatttttttttaacattctcacttgaaacttgttctgcagATCTTTCGGCTACCATGCTCTGGAACTGGCACAGATGTTGCTGAGAC
CCCTATTTCTTTAGCCAGTTCCTCAAGTCAGATGCTTTCTAAATCCGAAGTCACAGATGACCCTCAACGAAATGGGAATTCTAAATACAGGGTCCTTGAGTTGAAAGAACCACCATCTCTAATTCCTGGCATTTGTTCACTTCTTCCACTGCTTGGTGGTGACGTGCTAACTGGAGGGACAGATTTGAGGATACGACTGT
GGGATCACTTCAGTCCTGATCGCAGCTACAGTGTCTGTGGACCAACGACAAAGAACACCACAGAAAAGGAAATTTATGATATGAGATCCATTAATGGCGTACAAGTTATTCAAGCGGTGAACAGGCAATCTGCCAAGTTGACATCAAAGGCATACCTTGAAGCTTCTGCAACTGACTCTGCAGGTTGTCACCGTGATTGC
ATCCTATCAATGGCATCAGTCCAGCTAAACCAGAGGCTTTTGATTTCTAGCAGCCGGGATGGTGCAGTCAAGGTTTGGAAGTAGCAGTTACTAAATATAATATGCTTGTGTAGGATCGTAGAAATTTTCTTCTCTATGATAGAAGGTGATTTTCCTGTACCTTGGCGCTGTAATATATTCTTTTGTTACATTGTGGACAT
TAATTACATGTTAAAAGGGGTATACAGAGCCCTACATACTAAATTATTGCAACTTTGAGGCTTATTCATCATGGGGCACAGTTGTTTCATTGTATAAACATGCTGCTAAAGAAGATTTTGAGATTAGAGAAAAAATGCAGCTAAAATTGCAGAGATATACACTTTAAAGTTTGGATCCAAATCTCCAAGTTCTGTAACAT
AGAGAAAATTTATGGATGTATTTATTCCCTGGGATGGAATCAGGTTTCTTAATCTATAAGGAATTTCTAATTTTTACCATCAGGTTATCCTGACCATTCAAAACATTCTAAAAGAAGCCGTCTAAAAGTGTGACGAAAAGTGTG