sp|A8MR89|AEL1_ARATH ----> Protein AE7-like 1

Intron 1 GTGAGTCAGA ... CTTGTAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	27.78	13	1	5
A2	7.14	13	0	1
A3	30	14	4	6
A4	21.43	11	2	3
A5	0	2	0	0
A6	7.45	87	4	7
A7	6.49	72	0	5
A8	3.57	81	0	3
A9	3.16	92	0	3
A10	7.14	52	0	4

>TRINITY_DN40400_c1_g1_i5 from sample A8 / Example spliced isoform

ATACTAGGCGATAGAGACTCGCGATTTCCCATTCCGAAACGACTAAACTCCATGGAATGCTCAAAAAGTGGTGAGAGAGTAAGGAACTTTAGATTTCGCCGAAACTAACAACATGATACGGAAAATTACTTGAAGGTAATGTGGTTATCGTTTTCCATGGTGAATGTGGGATTCACCCACCCAAACAAACAAACACGCAT
CGTACCAAGTTGCGCTGGATTCCCTGTGGAACGATGTAATGCTTTCTCTCTAGATTCTTTTGAGGGAAAAAGTCGTTGTCCTCCTAGACAAAAACATTGAATTGAACAATGAATGTAGTCCGAGCCAGAGAAGGGCCATGAAAAATGTCCATCCGTACCTCCATTGCCGTGTTCAAAGGCCACCAGGCTCACTATAAGAA
CATTCTGGATTTGGAAAAAATTTTCTCCCCACAAATTGATAACGAGGAGTGGTGATCTGCGTTTCCATTGGAATAGAATTGGAATTACCAGGGCGAGGAGAGGAAAGGAGGCTTTGAATTTGAATGAGCATTCAGCAGCATCATGACTCCGGGATTGATCAATGCGAACCCTGTAGTGCATGCAAAGAAGGAACGAGAGC
GACTCGTTCGGCCCGAGGACACCAACTCCAATGATTTCGATGCCCTGGACATATATGATTCTGTGAGAGACATCAGGGATCCCGAGCACCCTTACTCGCTCGAACAGCTTAGCGTTCTATCTGAGGAATCTGTTACAGTGGATGAAAAACTTGGGCGCATATTGATAACATTCACACCCACTGTGCAGCATTGTAGTATG
GCAGCAGTTATTGGTTTGTGTTTACGAGTTAAATTGATGCGAAATTTCCCTGCACATTACAAGGTCGACATCTATGTTTCTCCTGGTTCCCATGCCTTTGAGGCTTCAGTGAAAATATGAGAACACATGACATTGAAGTGATAATGGTGGGCCTAGACTCTTAACCTCATAGTTTGTCAAATTGTGTCAGAATAGATTGT
TCACATTAAGTAAGCAGAATGTAGCTAGTCGAGTGAGAAGTTGTTATGTAGCGTGTGCAATGATTTGAGCAAATATGAGCACCAAACTATTTATGTGCCCCATGTATTGTGTACTAGAATGAATTGTGAATTTGTGAGTAATTTTATATATCATATACTAAAAGATGAGAAATCTGGAGCTTCAAAAAGTAATGATAGAT
TGCATAGATCTGCACATTCAAAGGAATGTTGATTGTATCAATGTATAAAGGAATGTTGATTGTGTACTAGAATGAATTGTG

>TRINITY_DN40400_c1_g1_i1 from sample A8 / Example unspliced isoform:

TTCCCATGCCTTTGAGGCTTCAGgtgagtcagagaaacacacaatcatgtttgctgctgctactttccttttcttttttgagcataacgtggcaaatagaaatcccttagcacttaaaattttaaaaatatgcttgtaacagTGAAAATATGAGAACACATGACATTGAAGTGATAATGGTGGGCCTAGACTCTTAACCT
CATAGTTTGTCAAATTGTGTCAGAATAGATTGTTCACATTAAGTAAGCAGAATGTAGCTAGTCGAGTGAGAAGTTGTTATGTAGCGTGTGCAATGATTTGAGCAAATATGAGCACCAAACTATTTATGTGCCCCATGTATTGTGTACTAGAATGAATTGTGAATTTGTGAGTAATTTTATATATCATATACTAAAAGATG
AGAAATCTGGAGCTTCAAAAAGTAATGATAGATTGCATAGATCTGCACATTCAAAGGAATGTTGATTGTATCAATGTATAAAGGAATGTTGATTGTGTACTAGAATGAATTGTG