sp|Q9XI07|SWI3C_ARATH ----> SWI/SNF complex subunit SWI3C
Intron 1 GTGCACTTTT ... GTGAATGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.35 | 132 | 40 | 36 |
| A2 | 24.66 | 110 | 23 | 49 |
| A3 | 19.2 | 101 | 19 | 29 |
| A4 | 23.57 | 107 | 17 | 49 |
| A5 | 21.35 | 35 | 9 | 10 |
| A6 | 21.98 | 213 | 53 | 67 |
| A7 | 21.31 | 229 | 49 | 75 |
| A8 | 21.38 | 228 | 56 | 68 |
| A9 | 20.44 | 216 | 44 | 67 |
| A10 | 21.2 | 210 | 54 | 59 |
>TRINITY_DN124127_c1_g1_i15 from sample A1 / Example spliced isoformCCACACACATAAAACCTAATACGCTGCAGCCGAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCA
TCCCTCCAGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGAGCCTATGGAAGTTTTCCCA
GGCAGAGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGGTATTGTCTACGATGGCCGA
TGTTGGGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAATAGCATGCATAGAATGGAACGACAAC
TAGTTCCAGAGTATTTTACTGGGAAGTCTAGTGAGCGTACGCCAAAAGTCTACATGGAACTCAGAAATACTATTGTTAGGAAGTATTTGGAAAATCCAGAAAGGGCTCTAACATTAACTGATATTCAGGGGCTGACTAATGTAGACACAAAATATTTGACTAGGATTTTTGAGTTTCTAGACCATTGGGGCATCATAAAT
TACAGTGTAACAAATGATTCAAGGAATAATGGAACTTCATGGGCAGACACTAAAGAGATTTTACAGGAGAACACAAGTGGAGAGGTACAAATCCCACCTGGCTCATTGAGGAGTATCCAGAGTTTGATTCGTTTTGAGGCACCTCATTCTAAGTTCAGGCCAGCTGATGTTTCTGTTTCATCTGGATGCCCTAGTGGAGT
TATTGCTGATTTGGATCGTCGGATTCAGGAGCGTCTTTTAGAACATCGATGTAGTTCCTGCTCAAAATACTGTTCTGAAATTTTTTATCAGTCTCAGAAAGAGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGGATGGATGCTACAAAAGATG
CAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGCATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGATATCCCTGACACTGGCTTA
AAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGAAATTCTGGAGGTTCTTGCTCTGCAGAACTCGAATCCGAAAACAGAATTGCATTTGCAAATTCTAGTAATCCAGTCATGGCCCTGGTTGCCTTCCTAGCTTCTGCAATAGGACCACGTGTAGCTGCAGCTTG
TGCACATGCGGCTTTAACTGCATTATCCAAAGATGACTGCACTACAGGAAATATTGGAGATAGCTCCTTACATAAAGAAGGTTATGCTCGCGGTGACAGGCTGATTTCAGAGAATGTGCAGAGAGAAGATGGGAAACAGGTAGCTGTTTCAAGTTCGATTCAACAACGAGACCATGAAAAAGAGGAATCCCAGGTAGTGC
AAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCGAAAAGGTAAAATTGGCTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCCAACGTCTTGCAGCAAGTATAGTGTCTAGTCAGTTAAAGAGAACCGAGATAAAATTGAAGCAGTTTGCA
GAGATTGAGTCTGTGTTGATGAAGGAATGTGAACAGGTTGAAAGGCAAAGACAGAGATTAACAGCAGAATGGGTTCGTCTCATGTCAAGTCATTTTGGACCTGGTGGATCATCTACATTGGCTGCAGGACCTGTAGCAGTATCTGCAATGAATAATAGGCCTGTAATTTCAGCTTCTGTTCCATCAGCTCCCCATTCTGG
TTATGTCCCTTCGTCTCATCAAGCTATGCCTTTCATGGCTAGACCATCTATGTTTTCATTTGGACCAGGTGGTGCAGGATCATCTATGCCCTTGTCTACAATGCAGTCCTTTTCAGGTGGAGCCCCTGGCTCTGTGATGATGGGGTCCAGTGCTACAAATTCCAATGTTGCTCACAACATGTTGAGACCTGTCACTGGAA
CTAACACAAGTACAAATTAAATACAAACTGTCTGCAAGCATCGATGTATTGTACATCCATTGTTTGAGGTGTTTGCATATTTTTCTATAGTTTGTATTCTAGTATGCTCAAAGGGCATTTTTACCAATTTTTGGTTCATTCTTTGTTGATCACTGACATGCATGGCCCGTGACAAGACAGTAGCTGTGACATGCAAGGGA
AGTTCTGTTAATATTTGCATGAGCCCTTGTTTGCCCTGCGCCCCACGTGAATGGAGATTGTTCCTATAGGGCTAATGACCTTATATTGTAATTTAGATTGTGTTGTGCTTGTGGAAGTGTGCGGCTACACCTTTGTTTCTGGTCAAATGATTTTTCTGCATTTTTGTGACAGTCATTCAGTATTGTTATTACAAGTCTTA
TAGCTATACCATGTTCATAAGGCTTCTATAAAATTGGTACCAGAAAACTACGAAAGACGATTTACACCCATCTAGGCAACCTCTGCCAAAAATTATTAACAAGATCCAGTTATGGTCATCATCGAGACCTTCAATTCTACATCTGTGTTTTCAAGTATAGCCAGTTAAGCTATGAAGCAGCAAAGGATAAAATGGAAAAT
TATATGCTCAATTTTTGCCACACCAAACTATTTTGGGGTAAAATTCAGTTAGTATGGAATCTTCCCTTAGTTTTTGATAGTTTAGATGATCCTTGCTCTATATATACGTGTGGAAGCTGCAGTGTTTCTAAACATGCTCAAGTCTCAAGAACTTTCTACTGACAGTCTTGTCCACCAGTGAGGTTCAAATTTGTTATTGT
ATAAAATTCTTTTTTCAAGAGCAAATTGACAAAAATATTAATTCGCCATTGTTAGGCCTCTGACAATAGTTCAATATTTATGCTTTATAAATCCTTGATTCAAGCAGTTGATAACTGCATAGTGAACTGGGTTCATAAGATTTATTCGTCTTCCTGCT
>TRINITY_DN124127_c1_g1_i10 from sample A1 / Example unspliced isoform:CCACACACATAAAACCTAATACGCTGCAGCCGAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCA
TCCCTCCAGGTACTACGCCCTTATTATTCTTCACCCACAGCCTCGACTTTTTTATTTTCGACAAAATATTTAAATTTTCTGAAGGCTCTGAGGTTCGATGGAGGAAACAGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAA
TAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGAGCCTATGGAAGTTTTCCCAGGCAGAGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCC
ATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGGTATTGTCTACGATGGCCGATGTTGGGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAA
GCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAATAGCATGCATAGAATGGAACGACAACTAGTTCCAGAGTATTTTACTGGGAAGTCTAGTGAGCGTACGCCAAAAGTCTACATGGAACTCAGAAATACTATTGTTAGGAAGTATTTGGAAAATCCAG
AAAGGGCTCTAACATTAACTGATATTCAGGGGCTGACTAATGTAGACACAAAATATTTGACTAGGATTTTTGAGTTTCTAGACCATTGGGGCATCATAAATTACAGTGTAACAAATGATTCAAGGAATAATGGAACTTCATGGGCAGACACTAAAGAGATTTTACAGGAGAACACAAGTGGAGAGGTACAAATCCCACCT
GGCTCATTGAGGAGTATCCAGAGTTTGATTCGTTTTGAGGCACCTCATTCTAAGTTCAGGCCAGCTGATGTTTCTGTTTCATCTGGATGCCCTAGTGGAGTTATTGCTGATTTGGATCGTCGGATTCAGGAGCGTCTTTTAGAACATCGATGTAGTTCCTGCTCAAAATACTGTTCTGAAATTTTTTATCAGTCTCAGAA
AGAGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGGATGGATGCTACAAAAGATGCAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGC
ATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGATATCCCTGACACTGGCTTAAAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGAAATTCTGGAGGTTCTTGCTCTGCAGAACTC
GAATCCGAAAACAGAATTGCATTTGCAAATTCTAGTAATCCAGTCATGGCCCTGGTTGCCTTCCTAGCTTCTGCAATAGGACCACGTGTAGCTGCAGCTTGTGCACATGCGGCTTTAACTGCATTATCCAAAGATGACTGCACTACAGGAAATATTGGAGATAGCTCCTTACATAAAGAAGGTTATGCTCGCGGTGACAG
gtgcacttttgttccgttgaagttttaatgacaattatgtctggtctttatctgtaatttgttattgtacaatattgtgtgaactcttatattaggttgaagaattttggaaaagttaatgttatttgtcatacaagcaatcaaatccacatggcaggagcataaataacaattctctaatgttatttgtcatacaagct
atcaaatccacttgtctggaacataaataacaattctctaagaacttgtagtttttcatgaatcagcttttttagttagattagaatatacacaatttgcatttccaaacctggagtcagattggaccaggaaggtcttaggcagcatgcctagagattcaaaggattccaacttccaatccttttaaatcctttccttt
acccatgactctgttgagatgggccttagctcgccagattcactagcttgatccttcttctttgtggttttttcctaccttccactttatatgttcttgtattgctacactgtcttgttggaatttattattttcttgtgttaatgtaattttcttcatctaacttagaagtaatttcagagtgtattttatgagatgtt
tttgacaaactaaaaggttctctctttttgttgtgaatgaagGCTGATTTCAGAGAATGTGCAGAGAGAAGATGGGAAACAGGTAGCTGTTTCAAGTTCGATTCAACAACGAGACCATGAAAAAGAGGAATCCCAGGTAGTGCAAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCGAAAAGGTAAAAT
TGGCTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCCAACGTCTTGCAGCAAGTATAGTGTCTAGTCAG
Intron 2 GTGGTGCCTT ... CTTTGTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 4 | 8 | 8 |
| A2 | 100 | 0 | 22 | 13 |
| A3 | 85.71 | 2 | 16 | 8 |
| A4 | 100 | 0 | 7 | 6 |
| A5 | 66.67 | 1 | 2 | 2 |
| A6 | 64.71 | 6 | 14 | 8 |
| A7 | 76.74 | 5 | 18 | 15 |
| A8 | 81.82 | 1 | 3 | 6 |
| A9 | 51.35 | 9 | 12 | 7 |
| A10 | 75 | 6 | 18 | 18 |
>TRINITY_DN43264_c2_g1_i7 from sample A6 / Example spliced isoformTGTTTGGCCATGTCGAGGTGGGTTGGCCCATGTTCATGCGTTTAGTCTGGCCATGCTCCAGTGGTTCCTTTCTCGGTTATTGTCTAGTTGCTTTGTTGTTGTTTGTCTAGTCATTCTCGGGACGTGGTATGAATGTTTGTGGTTCTTGAATTGGCGTTCGTTTGCTGTGCATTTCTTTACAAGGTGCATTCATTCCAGTT
TCGGGTCTTTGTTTCTTTGTCTCCAAGCTTGGGTTCTGGTGTATAGATATTTGTCTTTAACCTTTGCTTGTTTGTTGGGAACCTGGGTTGTGGTGTCTATAGCTCTGCAGTTAACCTTCCATTGTTTCTCTGCATCACAATGCGTTTAAGTTACCTTGGGGTGGTTTGGGCTGTTGATGTTGTGGTGGGCCTCGTTGGTC
CCTATTTGTCTGGTATATTCGGCTCTACTCTGTTGGATTGCTGGATATAGAGGTGGAGGTCTGGGGGTTGAGAAGCATTGTGCAATGAACATAGAGAAAGAGCGATAATGTTCAGGAGCATATAATATTTAATCAATTGAAATTCAATCCTACAGTTCTCACTATATATGTACTCTTCGATATGTTTCTACCAGCAATTG
GTCCCGAGAAACTGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGGATGGATGCTACAAAAGATGCAGGGGATCTTGATGGCAATAACTGGACTGGTCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAA
ATTGCAGAGCATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGATATCCCTGACACTGGCTTAAAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGA
>TRINITY_DN43264_c2_g1_i12 from sample A6 / Example unspliced isoform:TGTTTGGCCATGTCGAGGTGGGTTGGCCCATGTTCATGCGTTTAGTCTGGCCATGCTCCAGTGGTTCCTTTCTCGGTTATTGTCTAGTTGCTTTGTTGTTGTTTGTCTAGTCATTCTCGGGACGTGGTATGAATGTTTGTGGTTCTTGAATTGGCGTTCGTTTGCTGTGCATTTCTTTACAAGGTGCATTCATTCCAGTT
TCGGGTCTTTGTTTCTTTGTCTCCAAGCTTGGGTTCTGGTGTATAGATATTTGTCTTTAACCTTTGCTTGTTTGTTGGGAACCTGGGTTGTGGTGTCTATAGCTCTGCAGTTAACCTTCCATTGTTTCTCTGCATCACAATGCGTTTAAGgtggtgccttaggtgtattttctatttttgtcgagcgatcaatatttagt
gtactggtattaatgtttatagtgcgtttctttttttcctctttgtatagTTACCTTGGGGTGGTTTGGGCTGTTGATGTTGTGGTGGGCCTCGTTGGTCCCTATTTGTCTGGTATATTCGGCTCTACTCTGTTGGATTGCTGGATATAGAGGTGGAGGTCTGGGGGTTGAGAAGCATTGTGCAATGAACATAGAGAAAG
AGCGATAATGTTCAGGTCAATGATTCCATCAAAATTCTTCCAAAAGGGAGCATATAATATTTAATCAATTGAAATTCAATCCTACAGTTCTCACTATATATGTACTCTTCGATATGTTTCTACCAGCAATTGGTCCCGAGAAACTGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGA
ATGGCAACAGTTGATTTTGTTCGGATGGATGCTACAAAAGATGCAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGCATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGA
GGATGGTTTGCTTGACAACATTGATATCCCTGACACTGGCTTAAAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGACATTCTGGAGGTTCCTGCCCTGCAGAACTCGAATCCGAAAACAGAATTGCATTTGCAAATTCTAGTAATCCAGTCATGGCCCTGGACA
GCTCACGTCTCAGTCAAATGCATTACATTTATTCAAGTCTTTGGATTAGATAGTCACATTAATTTATCAAAATTCTTATATTTCAATTCAAAAGTTTGGACCATTCTCGCATGGAGTTTTCTTGGAATGCTATATTCTGTTACGATTTGGACAGACTTGTATTTGTGAGATAGTGGCTCTATATTTGTCATGACTTTATG
TAATGTTTACTAAAGCTGCAGACAAATAATAGAAAATTCAGGCCATGAACACGCCATATTGGTATGTATATATATTGTAAACTGTTATATCAATCTATATAAGCAGTTATTTGAAGATTTATATGGTTTTCTTATTGGAAGATCATTCGGTATTTATATTGTAAACTGTTTGCTTTTCTG
Intron 3 GTACTACGCC ... GAGGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.8 | 161.4 | 66 | 91.6 |
| A2 | 31.36 | 124.3 | 56 | 57.6 |
| A3 | 27.82 | 213.5 | 69 | 95.5 |
| A4 | 35.3 | 136.3 | 62 | 86.7 |
| A5 | 29.75 | 89.6 | 37 | 38.8 |
| A6 | 27.82 | 70 | 27 | 26.9 |
| A7 | 28.95 | 172.5 | 62 | 78.6 |
| A8 | 27.8 | 42.8 | 10 | 22.9 |
| A9 | 27.46 | 110.7 | 44 | 39.8 |
| A10 | 30.74 | 184.2 | 83 | 80.5 |
>TRINITY_DN124127_c1_g1_i15 from sample A1 / Example spliced isoformCCACACACATAAAACCTAATACGCTGCAGCCGAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCA
TCCCTCCAGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGAGCCTATGGAAGTTTTCCCA
GGCAGAGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGGTATTGTCTACGATGGCCGA
TGTTGGGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAATAGCATGCATAGAATGGAACGACAAC
TAGTTCCAGAGTATTTTACTGGGAAGTCTAGTGAGCGTACGCCAAAAGTCTACATGGAACTCAGAAATACTATTGTTAGGAAGTATTTGGAAAATCCAGAAAGGGCTCTAACATTAACTGATATTCAGGGGCTGACTAATGTAGACACAAAATATTTGACTAGGATTTTTGAGTTTCTAGACCATTGGGGCATCATAAAT
TACAGTGTAACAAATGATTCAAGGAATAATGGAACTTCATGGGCAGACACTAAAGAGATTTTACAGGAGAACACAAGTGGAGAGGTACAAATCCCACCTGGCTCATTGAGGAGTATCCAGAGTTTGATTCGTTTTGAGGCACCTCATTCTAAGTTCAGGCCAGCTGATGTTTCTGTTTCATCTGGATGCCCTAGTGGAGT
TATTGCTGATTTGGATCGTCGGATTCAGGAGCGTCTTTTAGAACATCGATGTAGTTCCTGCTCAAAATACTGTTCTGAAATTTTTTATCAGTCTCAGAAAGAGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGGATGGATGCTACAAAAGATG
CAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGCATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGATATCCCTGACACTGGCTTA
AAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGAAATTCTGGAGGTTCTTGCTCTGCAGAACTCGAATCCGAAAACAGAATTGCATTTGCAAATTCTAGTAATCCAGTCATGGCCCTGGTTGCCTTCCTAGCTTCTGCAATAGGACCACGTGTAGCTGCAGCTTG
TGCACATGCGGCTTTAACTGCATTATCCAAAGATGACTGCACTACAGGAAATATTGGAGATAGCTCCTTACATAAAGAAGGTTATGCTCGCGGTGACAGGCTGATTTCAGAGAATGTGCAGAGAGAAGATGGGAAACAGGTAGCTGTTTCAAGTTCGATTCAACAACGAGACCATGAAAAAGAGGAATCCCAGGTAGTGC
AAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCGAAAAGGTAAAATTGGCTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCCAACGTCTTGCAGCAAGTATAGTGTCTAGTCAGTTAAAGAGAACCGAGATAAAATTGAAGCAGTTTGCA
GAGATTGAGTCTGTGTTGATGAAGGAATGTGAACAGGTTGAAAGGCAAAGACAGAGATTAACAGCAGAATGGGTTCGTCTCATGTCAAGTCATTTTGGACCTGGTGGATCATCTACATTGGCTGCAGGACCTGTAGCAGTATCTGCAATGAATAATAGGCCTGTAATTTCAGCTTCTGTTCCATCAGCTCCCCATTCTGG
TTATGTCCCTTCGTCTCATCAAGCTATGCCTTTCATGGCTAGACCATCTATGTTTTCATTTGGACCAGGTGGTGCAGGATCATCTATGCCCTTGTCTACAATGCAGTCCTTTTCAGGTGGAGCCCCTGGCTCTGTGATGATGGGGTCCAGTGCTACAAATTCCAATGTTGCTCACAACATGTTGAGACCTGTCACTGGAA
CTAACACAAGTACAAATTAAATACAAACTGTCTGCAAGCATCGATGTATTGTACATCCATTGTTTGAGGTGTTTGCATATTTTTCTATAGTTTGTATTCTAGTATGCTCAAAGGGCATTTTTACCAATTTTTGGTTCATTCTTTGTTGATCACTGACATGCATGGCCCGTGACAAGACAGTAGCTGTGACATGCAAGGGA
AGTTCTGTTAATATTTGCATGAGCCCTTGTTTGCCCTGCGCCCCACGTGAATGGAGATTGTTCCTATAGGGCTAATGACCTTATATTGTAATTTAGATTGTGTTGTGCTTGTGGAAGTGTGCGGCTACACCTTTGTTTCTGGTCAAATGATTTTTCTGCATTTTTGTGACAGTCATTCAGTATTGTTATTACAAGTCTTA
TAGCTATACCATGTTCATAAGGCTTCTATAAAATTGGTACCAGAAAACTACGAAAGACGATTTACACCCATCTAGGCAACCTCTGCCAAAAATTATTAACAAGATCCAGTTATGGTCATCATCGAGACCTTCAATTCTACATCTGTGTTTTCAAGTATAGCCAGTTAAGCTATGAAGCAGCAAAGGATAAAATGGAAAAT
TATATGCTCAATTTTTGCCACACCAAACTATTTTGGGGTAAAATTCAGTTAGTATGGAATCTTCCCTTAGTTTTTGATAGTTTAGATGATCCTTGCTCTATATATACGTGTGGAAGCTGCAGTGTTTCTAAACATGCTCAAGTCTCAAGAACTTTCTACTGACAGTCTTGTCCACCAGTGAGGTTCAAATTTGTTATTGT
ATAAAATTCTTTTTTCAAGAGCAAATTGACAAAAATATTAATTCGCCATTGTTAGGCCTCTGACAATAGTTCAATATTTATGCTTTATAAATCCTTGATTCAAGCAGTTGATAACTGCATAGTGAACTGGGTTCATAAGATTTATTCGTCTTCCTGCT
>TRINITY_DN124127_c1_g1_i10 from sample A1 / Example unspliced isoform:CCACACACATAAAACCTAATACGCTGCAGCCGAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCA
TCCCTCCAGgtactacgcccttattattcttcacccacagcctcgacttttttattttcgacaaaatatttaaattttctgaaggctctgaggttcgatggaggaaacagGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAA
TAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGAGCCTATGGAAGTTTTCCCAGGCAGAGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCC
ATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGGTATTGTCTACGATGGCCGATGTTGGGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAA
GCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAATAGCATGCATAGAATGGAACGACAACTAGTTCCAGAGTATTTTACTGGGAAGTCTAGTGAGCGTACGCCAAAAGTCTACATGGAACTCAGAAATACTATTGTTAGGAAGTATTTGGAAAATCCAG
AAAGGGCTCTAACATTAACTGATATTCAGGGGCTGACTAATGTAGACACAAAATATTTGACTAGGATTTTTGAGTTTCTAGACCATTGGGGCATCATAAATTACAGTGTAACAAATGATTCAAGGAATAATGGAACTTCATGGGCAGACACTAAAGAGATTTTACAGGAGAACACAAGTGGAGAGGTACAAATCCCACCT
GGCTCATTGAGGAGTATCCAGAGTTTGATTCGTTTTGAGGCACCTCATTCTAAGTTCAGGCCAGCTGATGTTTCTGTTTCATCTGGATGCCCTAGTGGAGTTATTGCTGATTTGGATCGTCGGATTCAGGAGCGTCTTTTAGAACATCGATGTAGTTCCTGCTCAAAATACTGTTCTGAAATTTTTTATCAGTCTCAGAA
AGAGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGGATGGATGCTACAAAAGATGCAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGC
ATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGATATCCCTGACACTGGCTTAAAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGAAATTCTGGAGGTTCTTGCTCTGCAGAACTC
GAATCCGAAAACAGAATTGCATTTGCAAATTCTAGTAATCCAGTCATGGCCCTGGTTGCCTTCCTAGCTTCTGCAATAGGACCACGTGTAGCTGCAGCTTGTGCACATGCGGCTTTAACTGCATTATCCAAAGATGACTGCACTACAGGAAATATTGGAGATAGCTCCTTACATAAAGAAGGTTATGCTCGCGGTGACAG
GTGCACTTTTGTTCCGTTGAAGTTTTAATGACAATTATGTCTGGTCTTTATCTGTAATTTGTTATTGTACAATATTGTGTGAACTCTTATATTAGGTTGAAGAATTTTGGAAAAGTTAATGTTATTTGTCATACAAGCAATCAAATCCACATGGCAGGAGCATAAATAACAATTCTCTAATGTTATTTGTCATACAAGCT
ATCAAATCCACTTGTCTGGAACATAAATAACAATTCTCTAAGAACTTGTAGTTTTTCATGAATCAGCTTTTTTAGTTAGATTAGAATATACACAATTTGCATTTCCAAACCTGGAGTCAGATTGGACCAGGAAGGTCTTAGGCAGCATGCCTAGAGATTCAAAGGATTCCAACTTCCAATCCTTTTAAATCCTTTCCTTT
ACCCATGACTCTGTTGAGATGGGCCTTAGCTCGCCAGATTCACTAGCTTGATCCTTCTTCTTTGTGGTTTTTTCCTACCTTCCACTTTATATGTTCTTGTATTGCTACACTGTCTTGTTGGAATTTATTATTTTCTTGTGTTAATGTAATTTTCTTCATCTAACTTAGAAGTAATTTCAGAGTGTATTTTATGAGATGTT
TTTGACAAACTAAAAGGTTCTCTCTTTTTGTTGTGAATGAAGGCTGATTTCAGAGAATGTGCAGAGAGAAGATGGGAAACAGGTAGCTGTTTCAAGTTCGATTCAACAACGAGACCATGAAAAAGAGGAATCCCAGGTAGTGCAAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCGAAAAGGTAAAAT
TGGCTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCCAACGTCTTGCAGCAAGTATAGTGTCTAGTCAG
Intron 4 GTACTACGCC ... TTTTCTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.34 | 113.9 | 66 | 37.8 |
| A2 | 32.36 | 91 | 56 | 30.9 |
| A3 | 24.56 | 157.9 | 69 | 33.8 |
| A4 | 37.88 | 73.9 | 62 | 27.9 |
| A5 | 29.41 | 61.3 | 37 | 14 |
| A6 | 29.85 | 47.2 | 27 | 13 |
| A7 | 27.13 | 108.9 | 62 | 19 |
| A8 | 24.77 | 22.7 | 10 | 4.9 |
| A9 | 25.83 | 81.9 | 44 | 12.9 |
| A10 | 31.72 | 129.4 | 83 | 36.9 |
>TRINITY_DN124127_c1_g1_i7 from sample A1 / Example spliced isoformGCAGAGGAAGCCAAAAGTCCATTTTGTGTTAAACATGTTTGATTTTGCTCAAATTTAATGTTGGTAAGATGAAGCATGCATCACTATTTAACAGTTTATAATATTTGCAGACCATTGCGAATGACCCATGAAAACCATTATTTAGAAACACCAAAACTCTTTCACTTTTCCACACACATAAAACCTAATACGCTGCAGCC
GAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCATCCCTCCAGGCTCTGAGGTTCGATGGAGGAA
ACAGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGAGCCTATGGAAGTTTTCCCAGGCAG
AGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGGTATTGTCTACGATGGCCGATGTTG
GGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGGTGAGCGGCTATTTTATAATTTGTTTTTTTTACATTTTGTCGGACAT
CCCTTTTGACTGGAGCGGGTACAGAATTCCTTACTCTAACAGCTTTACAACCAGAATGCATTCCGCTACCAGCTGAAGGGCATCTATTCAGTCGAATTCATCCTACTTCCAGCTGGCGTAATTTTGCAAAGTCCACATTATTGGGGGGACCACATCATTCTCTGTTCCATTAAATTTACCCAGTAATTCTTACTTGCCTA
ATTTGCAAAGACCCCATTATCACGGGGCCACCTTTTTTTATTCCATCAAATTCATCAAGACCTCTACCTGGCCTCACTTACAAATACATCATTATCATGGGGGCCACCATTAGCAGCATTCTGCATCTGATCAAGGGGACCTCCAATAACAATACTCCACATTACCACAGAACCAGTGTTGCATCCTCAACATGACCCAG
ACCTTAGAAAGACTCGGTCTACGACATTAACGCAAGGAGCGTGTCCATTGGGTTTTGAACCTGGGTCATCATCATCATCATCATGGAAATTGCTCCAACTTGCCACTAGACCATCATCATCATGGCAAATGCTCCAACTTCCCTCTAGACCACAGCCTCTCCACTATGTTGAACTTGAGTTTTCATCTAATTGGACTTTT
GGATACAGTAGCATGTTTGGAAAAAAATTAAAATTGAAACTAGCCCAAACCCATATAAACCCTGGTGTGTTGTGCACCTTGAGGTTGTAAAGCTCGAGGTTTCATATTCATATTCACTGCACCCAAAGAAACAATTAGATTTGATGCACAGTTACACGGACTGTTGTAGAGTTGATGCATGTCTAGATTCAGTGCACTGT
TACACTAACACAAACATACACAGGATTGATGGATGACCCTCCTCCCCCCCCACCGGGCTGTATATTGCATCTCACATAGTGCAAAAATTGCAAAAAGTGGGTATTGAATTTTTTTTTTGGTTTATGAAAGTACAAATAATTGTAAAAGAGAAATTCATCACATCAGCAGAGTTAGATTATAAGTTCTTCCTCCTCCCTTT
TGCAAAATTGTAGAATGATGCCCATTTAGCAGTGCTCTCTGCTTCCTTGCAAAATTTGGAAGAATACCGAGCATAAAAACTAGCACAGATGCATCTAAGCTCGGGTTTGATCCAAAGCATTAAAAACTGGAACTGGGACTGCAACCGGCTGAGGGTCAGATCAGGACTGGACTGGAAAAAGTGACCAATGAACCTGTTTA
TGAAAAATTACATAAATCTGAAAGTTTTAATAAAAAAAAATATATTCATGTACATCAATGTAAATCTGAACTACGAGACACCAAACATGCAATAGAGGGGGAGTGTCATTATATAACACAAACTTAGGGTTTAGGAGGGGTGGGGTGCTGTTTTCTTTCGGGAAAACGTGTCTGCACCGGTCAAACCTGTTTATGAAACG
GTTGAACTGGTCATTCCGGTTCACAAACTAGTCCAGGTCCCCAAGTGGTGAACTGGTCTGGACCAGCCGGTTCCTGTACTATACGGCTGTTTTTTAATACACTGGGACTCTGATATGCACCTCAAGGTTCCTCAAGGTGTCTGCACCGGTCAAACCAGTTTATGAAACAGTTGAACTGGTCATTCCGGTTCACAAACTAG
TCCAGGTCCCCAAGGGGTGAACTGGTCTGGGCCAGCCGGTTCCTGTACTATATGGCTGGTTTTTAATACACTGGGACTCGATATGCACCTCAAGGTTGCAAAGCTATAGCTTGAATCTCATGTTCAAATGTTTGATTTGTTGGCTATTTGTGTGAACTAGTGATATGCTTCCTTGAGCTTCAGAGCGTCATGCTGCATAT
CAGATCTGGGTTTAGTTAGGTTTGCGCTATTGTCCATCTTTAATGCATCCAATGCACTGCCTACATTCAATGCAGTGCTACACACATAGGCACACACACAAACGCATGTAGTTGATGGATCATGCCCACCCCCACCTGGGCTGTAGAATGCACCTTGCTTCTCTGGATGCAACTATGTCTGGAAAAAATGGTTACAACAC
ATATGCAATAAATTATTGTGAATCTGTGATGTTTTAGCTTGAGGTATCTTCGCTGCTATCCATCCCAGATTCCAGAGTCATAAGGGCCGAGCATAATGTGACATGTAGGGTCAATTGTGAAAAATTGACTCTGCCAGTATGGAATGCCAATAAGGAGTCTTTATATGCCATATGGAAACAACACTACAATAGATAGAGTA
TACCAAGCATAAATTTCTAGTTTGAGGCATCTGGCTGTCATCTAGCAGAGGAAGCCAAAAGTCCATTTTGTGTTAAACATGTTTGATTTTGCTCAAATTTAATGTTGGTAAGATGAAGCATGCATCACTTTTTAACAGTTTATAATATTTGCAGACCATTGCAAATGATCCATGAAAACCATTATTTAGAAACACCAAAA
CTCTGTGATGTTTTAGCTTGAGGTATCTTCGCTGCTATCCATCCCAGATTCCAGAGTCATAAGGGCCGAGCATAATGTGACATGTAGGGTCAATTGCGAAAAATTGACTATGTCTGTATGGAAGGCCAATATGAAGGCCGTATGGCAACAACACTACAATAGATAGAGTATACCAAGCATAAATATCAGTTTGAGGCATC
TGGTTGTCATCTAGCAGAGGAAGCCAA
>TRINITY_DN124127_c1_g1_i8 from sample A1 / Example unspliced isoform:GCAGAGGAAGCCAAAAGTCCATTTTGTGTTAAACATGTTTGATTTTGCTCAAATTTAATGTTGGTAAGATGAAGCATGCATCACTATTTAACAGTTTATAATATTTGCAGACCATTGCGAATGACCCATGAAAACCATTATTTAGAAACACCAAAACTCTTTCACTTTTCCACACACATAAAACCTAATACGCTGCAGCC
GAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCATCCCTCCAGgtactacgcccttattattctt
cacccacagcctcgacttttttattttcgacaaaatatttaaattttctgaagGCTCTGAGGTTCGATGGAGGAAACAGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGT
CAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGAGCCTATGGAAGTTTTCCCAGGCAGAGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAG
TGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGGTATTGTCTACGATGGCCGATGTTGGGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAG
CGTTTCTACGCCTTTCCAATGCATGCAGGTGAGCGGCTATTTTATAATTTGTTTTTTTTACATTTTGTCGGACATCCCTTTTGACTGGAGCGGGTACAGAATTCCTTACTCTAACAGCTTTACAACCAGAATGCATTCCGCTACCAGCTGAAGGGCATCTATTCAGTCGAATTCATCCTACTTCCAGCTGGCGTAATTTT
GCAAAGTCCACATTATTGGGGGGACCACATCATTCTCTGTTCCATTAAATTTACCCAGTAATTCTTACTTGCCTAATTTGCAAAGACCCCATTATCACGGGGCCACCTTTTTTTATTCCATCAAATTCATCAAGACCTCTACCTGGCCTCACTTACAAATACATCATTATCATGGGGGCCACCATTAGCAGCATTCTGCA
TCTGATCAAGGGGACCTCCAATAACAATACTCCACATTACCACAGAACCAGTGTTGCATCCTCAACATGACCCAGACCTTAGAAAGACTCGGTCTACGACATTAACGCAAGGAGCGTGTCCATTGGGTTTTGAACCTGGGTCATCATCATCATCATCATGGAAATTGCTCCAACTTGCCACTAGACCATCATCATCATGG
CAAATGCTCCAACTTCCCTCTAGACCACAGCCTCTCCACTATGTTGAACTTGAGTTTTCATCTAATTGGACTTTTGGATACAGTAGCATGTTTGGAAAAAAATTAAAATTGAAACTAGCCCAAACCCATATAAACCCTGGTGTGTTGTGCACCTTGAGGTTGTAAAGCTCGAGGTTTCATATTCATATTCACTGCACCCA
AAGAAACAATTAGATTTGATGCACAGTTACACGGACTGTTGTAGAGTTGATGCATGTCTAGATTCAGTGCACTGTTACACTAACACAAACATACACAGGATTGATGGATGACCCTCCTCCCCCCCCACCGGGCTGTATATTGCATCTCACATAGTGCAAAAATTGCAAAAAGTGGGTATTGAATTTTTTTTTTGGTTTAT
GAAAGTACAAATAATTGTAAAAGAGAAATTCATCACATCAGCAGAGTTAGATTATAAGTTCTTCCTCCTCCCTTTTGCAAAATTGTAGAATGATGCCCATTTAGCAGTGCTCTCTGCTTCCTTGCAAAATTTGGAAGAATACCGAGCATAAAAACTAGCACAGATGCATCTAAGCTCGGGTTTGATCCAAAGCATTAAAA
ACTGGAACTGGGACTGCAACCGGCTGAGGGTCAGATCAGGACTGGACTGGAAAAAGTGACCAATGAACCTGTTTATGAAAAATTACATAAATCTGAAAGTTTTAATAAAAAAAAATATATTCATGTACATCAATGTAAATCTGAACTACGAGACACCAAACATGCAATAGAGGGGGAGTGTCATTATATAACACAAACTT
AGGGTTTAGGAGGGGTGGGGTGCTGTTTTCTTTCGGGAAAACGTGTCTGCACCGGTCAAACCTGTTTATGAAACGGTTGAACTGGTCATTCCGGTTCACAAACTAGTCCAGGTCCCCAAGTGGTGAACTGGTCTGGACCAGCCGGTTCCTGTACTATACGGCTGTTTTTTAATACACTGGGACTCTGATATGCACCTCAA
GGTTCCTCAAGGTGTCTGCACCGGTCAAACCAGTTTATGAAACAGTTGAACTGGTCATTCCGGTTCACAAACTAGTCCAGGTCCCCAAGGGGTGAACTGGTCTGGGCCAGCCGGTTCCTGTACTATATGGCTGGTTTTTAATACACTGGGACTCGATATGCACCTCAAGGTTGCAAAGCTATAGCTTGAATCTCATGTTC
AAATGTTTGATTTGTTGGCTATTTGTGTGAACTAGTGATATGCTTCCTTGAGCTTCAGAGCGTCATGCTGCATATCAGATCTGGGTTTAGTTAGGTTTGCGCTATTGTCCATCTTTAATGCATCCAATGCACTGCCTACATTCAATGCAGTGCTACACACATAGGCACACACACAAACGCATGTAGTTGATGGATCATGC
CCACCCCCACCTGGGCTGTAGAATGCACCTTGCTTCTCTGGATGCAACTATGTCTGGAAAAAATGGTTACAACACATATGCAATAAATTATTGTGAATCTGTGATGTTTTAGCTTGAGGTATCTTCGCTGCTATCCATCCCAGATTCCAGAGTCATAAGGGCCGAGCATAATGTGACATGTAGGGTCAATTGTGAAAAAT
TGACTCTGCCAGTATGGAATGCCAATAAGGAGTCTTTATATGCCATATGGAAACAACACTACAATAGATAGAGTATACCAAGCATAAATTTCTAGTTTGAGGCATCTGGCTGTCATCTAGCAGAGGAAGCCAAAAGTCCATTTTGTGTTAAACATGTTTGATTTTGCTCAAATTTAATGTTGGTAAGATGAAGCATGCAT
CACTTTTTAACAGTTTATAATATTTGCAGACCATTGCAAATGATCCATGAAAACCATTATTTAGAAACACCAAAACTCTGTGATGTTTTAGCTTGAGGTATCTTCGCTGCTATCCATCCCAGATTCCAGAGTCATAAGGGCCGAGCATAATGTGACATGTAGGGTCAATTGCGAAAAATTGACTATGTCTGTATGGAAGG
CCAATATGAAGGCCGTATGGCAACAACACTACAATAGATAGAGTATACCAAGCATAAATATCAGTTTGAGGCATCTGGTTGTCATCTAGCAGAGGAAGCCAA
Intron 5 GTTTGATATA ... GTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.71 | 148 | 57 | 35 |
| A2 | 15.09 | 135 | 28 | 20 |
| A3 | 24.32 | 140 | 66 | 24 |
| A4 | 20.82 | 135 | 40 | 31 |
| A5 | 23.64 | 63 | 23 | 16 |
| A6 | 17.83 | 189 | 48 | 34 |
| A7 | 16.97 | 252 | 59 | 44 |
| A8 | 17.71 | 165 | 42 | 29 |
| A9 | 15.33 | 196 | 47 | 24 |
| A10 | 15.73 | 150 | 37 | 19 |
>TRINITY_DN103924_c1_g1_i1 from sample A5 / Example spliced isoformCATAAAACCTAATACGCTGCAGCCGAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCATCCCTCC
AGGCTCTGAGGTTCGATGGAGGAAACAGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGA
GCCTATGGAAGTTTTCCCAGGCAGAGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGG
TATTGTCTACGATGGCCGATGTTGGGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAATAGCATG
CATAGAATGGAACGGCAACTAGTTCCAGAGTATTTTACGGGGAAGTCTAGTGAGCGTACGCCAAAAGTCTACATGGAACTCAGAAATACTATTGTTAGGAAGTATTTGGAAAATCCAGAAAGGGCTCTAACATTAACTGATATTCAGGGGCTGACTAATGTAGACACAAAATATTTGACTAGGATTTTTGAGTTTCTAGA
CCATTGGGGCATCATAAATTACAGTGTAACAAATGATTCAAGGAATAATGGAACTTCATGGGCAGACACTAAAGAGATTTTACAGGAGAACACAAGTGGAGAGGTACAAATCCCACCTGGCTCATTGAGGAGTATCCAGAGTTTGATTCGTTTTGAGGCACCTCATTCTAAGTTCAGGCCAGCTGATGTTTCTGTTTCAT
CTGGATGCCCTAGTGGAGTTATTGCTGATTTGGATTGTCGGATTCAGGAGCGTATTTTAGAACATCGATGTAGTTCCTGCTCAAAATACTGTTCTGAAATTTTTTATCAGTCTCAGAAAGAGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGG
ATGGATGCTACAAAAGATGCAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGCATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGA
TATCCCTGACACTGGCTTAAAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGAAATTCTGGAGGTTCTTGCTCTGCAGAACTCGAATCCGAAAACAGAATTGCATTTGCAAATTCTAGTAATCCAGTCATGGCCCTGGTTGCCTTCCTAGCTTCTGCAATAGGAC
CACGTGTAGCTGCAGCTTGTGCACATGCGGCTTTAACTGCATTATCCAAAGATGACTGCACTACAGGAAATATTGGAGATAGCTCCTTACATAAAGAAGGTTATGCTCGCGGTGACAGGCTGATTTCAGAGAATGTGCAGAGAGAAGATGGGAAACAGGTAGCTGTTTCAAGTTCGATTCAACAACGAGACCATGAAAAA
GAGGAATCCCAGGTAGTGCAAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCGAAAAGGTAAAATTGGCTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCCAACGTCTTGCAGCAAGTATAGTGTCTAGTCAGTTAAAGAGAACCGAGAT
AAAATTGAAGCAGTTTGCAGAGATTGAGTCTGTGTTGATGAAGGAATGTGAACAGGTTGAAAGGCAAAGACAGAGATTAACAGCAGAATGGGTTCGTCTCATGTCAAGTCATTTTGGACCTGGTGGATCATCTACATTGGCTGCAGGACCTGTAGCAGTATCTGCAATGAATAATAGGCCTGTAATTTCAGCTTCTGTTC
CATCAGCTCCCCATTCTGGTTATGTCCCTTCGTCTCATCAAGCTATGCCTTTCATGGCTAGACCATCTATGTTTTCATTTGGACCAGGTGGTGCAGGATCATCTATGCCCTTGTCTACAATGCAGTCCTTTTCAGGTGGAGCCCCTGGCTCTGTGATGATGGGGTCCAGTGCTACAAATTCCAATGTTGCTCACAACATG
TTGAGACCTGTCACTGGAACTAACACAAGTACAAATTAAATACAAACTGTCTGCAAGCATCGATGTATTGTACATCCATTGTTTGAGGTGTTTGCATATTTTTCTATAGTTTGTATTCTAGTATGCTCAAAGGGCATTTTTACCAATTTTTGGTTCATTCTTTGTTGATCACTGACATGCATGGCCCGTGACAAGACAGT
AGCTGTGACATGCAAGGGAAGTTCTGTTAATATTTGCATGAGCCCTTGTTTGCCCTGCGCCCCACGTGAATGGAGATTGTTCCTATAGGGCTAATGACCTTATATTGTAATTTAGATTGTGTTGTGCTTGTGGAAGTGTGCGGCTACACCTTTGTTTCTGGTCAAATGATTTTTCTGCATTTTTGTGACAGTCATTCAGT
ATTGTTATTACAAGTCTTATAGCTATACCATGTTCATAAGGCTTCTATAAAATTGGTACCAGAAAACTACGAAAGACGATTTACACCCATCTAGGCAACCTCTGCCAAAAATTATTAACAAGATCCAGTTATGGTCATCATCGAGACCTTCAATTCTACATCTGTGTTTTCAAGTATAGCCAGTTAAGCTATGAAGCAGC
AAAGGC
>TRINITY_DN103924_c1_g1_i2 from sample A5 / Example unspliced isoform:CATAAAACCTAATACGCTGCAGCCGAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCATCCCTCC
AGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGAGCCTATGGAAGTTTTCCCAGGCAGAG
GCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGGTATTGTCTACGATGGCCGATGTTGGG
TTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAATAGCATGCATAGAATGGAACGGCAACTAGTTCC
AGAGTATTTTACGGGGAAGTCTAGTGAGCGTACGCCAAAAGTCTACATGGAACTCAGAAATACTATTGTTAGGAAGTATTTGGAAAATCCAGAAAGGGCTCTAACATTAACTGATATTCAGGGGCTGACTAATGTAGACACAAAATATTTGACTAGGATTTTTGAGTTTCTAGACCATTGGGGCATCATAAATTACAGTG
TAACAAATGATTCAAGGAATAATGGAACTTCATGGGCAGACACTAAAGAGATTTTACAGGAGAACACAAGTGGAGAGGTACAAATCCCACCTGGCTCATTGAGGAGTATCCAGAGTTTGATTCGTTTTGAGGCACCTCATTCTAAGTTCAGGCCAGCTGATGTTTCTGTTTCATCTGGATGCCCTAGTGGAGTTATTGCT
GATTTGGATTGTCGGATTCAGGAGCGTATTTTAGAACATCGATGTAGTTCCTGCTCAAAATACTGTTCTGAAATTTTTTATCAGTCTCAGAAAGAGgtttgatatatggaaacctattcttatcatagctgtgaaatatatttaatgtttgtcatcattgaatattcttctgtcactgcagcgcatagttgttcatagtc
atagagctctaaatactgcaaacttttcaagtgtgcctgcctctttaatcgtacttccggtgcataaaatcttgcaattacagctacctttgagcactggaatttctggttcaacatttttccgtggataagccttgacagtatctcttttgaatattcctgttttggcagACAGATGTAATATTATGCACAGAATGTTT
CAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGGATGGATGCTACAAAAGATGCAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGCATGTAGGAACTAAGTCAAAAGCCCAATGCATGC
TACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGATATCCCTGACACTGGCTTAAAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGAAATTCTGGAGGTTCTTGCTCTGCAGAACTCGAATCCGAAAACAGAATTGCATTTGCAAATTCT
AGTAATCCAGTCATGGCCCTGGTTGCCTTCCTAGCTTCTGCAATAGGACCACGTGTAGCTGCAGCTTGTGCACATGCGGCTTTAACTGCATTATCCAAAGATGACTGCACTACAGGAAATATTGGAGATAGCTCCTTACATAAAGAAGGTTATGCTCGCGGTGACAGGCTGATTTCAGAGAATGTGCAGAGAGAAGATGG
GAAACAGGTAGCTGTTTCAAGTTCGATTCAACAACGAGACCATGAAAAAGAGGAATCCCAGGTAGTGCAAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCGAAAAGGTAAAATTGGCTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCC
AACGTCTTGCAGCAAGTATAGTGTCTAGTCAGTTAAAGAGAACCGAGATAAAATTGAAGCAGTTTGCAGAGATTGAGTCTGTGTTGATGAAGGAATGTGAACAGGTTGAAAGGCAAAGACAGAGATTAACAGCAGAATGGGTTCGTCTCATGTCAAGTCATTTTGGACCTGGTGGATCATCTACATTGGCTGCAGGACCT
GTAGCAGTATCTGCAATGAATAATAGGCCTGTAATTTCAGCTTCTGTTCCATCAGCTCCCCATTCTGGTTATGTCCCTTCGTCTCATCAAGCTATGCCTTTCATGGCTAGACCATCTATGTTTTCATTTGGACCAGGTGGTGCAGGATCATCTATGCCCTTGTCTACAATGCAGTCCTTTTCAGGTGGAGCCCCTGGCTC
TGTGATGATGGGGTCCAGTGCTACAAATTCCAATGTTGCTCACAACATGTTGAGACCTGTCACTGGAACTAACACAAGTACAAATTAAATACAAACTGTCTGCAAGCATCGATGTATTGTACATCCATTGTTTGAGGTGTTTGCATATTTTTCTATAGTTTGTATTCTAGTATGCTCAAAGGGCATTTTTACCAATTTTT
GGTTCATTCTTTGTTGATCACTGACATGCATGGCCCGTGACAAGACAGTAGCTGTGACATGCAAGGGAAGTTCTGTTAATATTTGCATGAGCCCTTGTTTGCCCTGCGCCCCACGTGAATGGAGATTGTTCCTATAGGGCTAATGACCTTATATTGTAATTTAGATTGTGTTGTGCTTGTGGAAGTGTGCGGCTACACCT
TTGTTTCTGGTCAAATGATTTTTCTGCATTTTTGTGACAGTCATTCAGTATTGTTATTACAAGTCTTATAGCTATACCATGTTCATAAGGCTTCTATAAAATTGGTACCAGAAAACTACGAAAGACGATTTACACCCATCTAGGCAACCTCTGCCAAAAATTATTAACAAGATCCAGTTATGGTCATCATCGAGACCTTC
AATTCTACATCTGTGTTTTCAAGTATAGCCAGTTAAGCTATGAAGCAGCAAAGGC
Intron 6 GTATTTTGAA ... CTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.66 | 131 | 25 | 20 |
| A2 | 12.5 | 77 | 11 | 11 |
| A3 | 17.78 | 111 | 22 | 26 |
| A4 | 23.92 | 97 | 27 | 34 |
| A5 | 25.4 | 47 | 12 | 20 |
| A6 | 17.72 | 195 | 45 | 39 |
| A7 | 15.42 | 244 | 41 | 48 |
| A8 | 17.06 | 175 | 47 | 25 |
| A9 | 12.98 | 191 | 36 | 21 |
| A10 | 13.81 | 231 | 42 | 32 |
>TRINITY_DN103924_c1_g1_i1 from sample A5 / Example spliced isoformCATAAAACCTAATACGCTGCAGCCGAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCATCCCTCC
AGGCTCTGAGGTTCGATGGAGGAAACAGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGA
GCCTATGGAAGTTTTCCCAGGCAGAGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGG
TATTGTCTACGATGGCCGATGTTGGGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAATAGCATG
CATAGAATGGAACGGCAACTAGTTCCAGAGTATTTTACGGGGAAGTCTAGTGAGCGTACGCCAAAAGTCTACATGGAACTCAGAAATACTATTGTTAGGAAGTATTTGGAAAATCCAGAAAGGGCTCTAACATTAACTGATATTCAGGGGCTGACTAATGTAGACACAAAATATTTGACTAGGATTTTTGAGTTTCTAGA
CCATTGGGGCATCATAAATTACAGTGTAACAAATGATTCAAGGAATAATGGAACTTCATGGGCAGACACTAAAGAGATTTTACAGGAGAACACAAGTGGAGAGGTACAAATCCCACCTGGCTCATTGAGGAGTATCCAGAGTTTGATTCGTTTTGAGGCACCTCATTCTAAGTTCAGGCCAGCTGATGTTTCTGTTTCAT
CTGGATGCCCTAGTGGAGTTATTGCTGATTTGGATTGTCGGATTCAGGAGCGTATTTTAGAACATCGATGTAGTTCCTGCTCAAAATACTGTTCTGAAATTTTTTATCAGTCTCAGAAAGAGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGG
ATGGATGCTACAAAAGATGCAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGCATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGA
TATCCCTGACACTGGCTTAAAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGAAATTCTGGAGGTTCTTGCTCTGCAGAACTCGAATCCGAAAACAGAATTGCATTTGCAAATTCTAGTAATCCAGTCATGGCCCTGGTTGCCTTCCTAGCTTCTGCAATAGGAC
CACGTGTAGCTGCAGCTTGTGCACATGCGGCTTTAACTGCATTATCCAAAGATGACTGCACTACAGGAAATATTGGAGATAGCTCCTTACATAAAGAAGGTTATGCTCGCGGTGACAGGCTGATTTCAGAGAATGTGCAGAGAGAAGATGGGAAACAGGTAGCTGTTTCAAGTTCGATTCAACAACGAGACCATGAAAAA
GAGGAATCCCAGGTAGTGCAAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCGAAAAGGTAAAATTGGCTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCCAACGTCTTGCAGCAAGTATAGTGTCTAGTCAGTTAAAGAGAACCGAGAT
AAAATTGAAGCAGTTTGCAGAGATTGAGTCTGTGTTGATGAAGGAATGTGAACAGGTTGAAAGGCAAAGACAGAGATTAACAGCAGAATGGGTTCGTCTCATGTCAAGTCATTTTGGACCTGGTGGATCATCTACATTGGCTGCAGGACCTGTAGCAGTATCTGCAATGAATAATAGGCCTGTAATTTCAGCTTCTGTTC
CATCAGCTCCCCATTCTGGTTATGTCCCTTCGTCTCATCAAGCTATGCCTTTCATGGCTAGACCATCTATGTTTTCATTTGGACCAGGTGGTGCAGGATCATCTATGCCCTTGTCTACAATGCAGTCCTTTTCAGGTGGAGCCCCTGGCTCTGTGATGATGGGGTCCAGTGCTACAAATTCCAATGTTGCTCACAACATG
TTGAGACCTGTCACTGGAACTAACACAAGTACAAATTAAATACAAACTGTCTGCAAGCATCGATGTATTGTACATCCATTGTTTGAGGTGTTTGCATATTTTTCTATAGTTTGTATTCTAGTATGCTCAAAGGGCATTTTTACCAATTTTTGGTTCATTCTTTGTTGATCACTGACATGCATGGCCCGTGACAAGACAGT
AGCTGTGACATGCAAGGGAAGTTCTGTTAATATTTGCATGAGCCCTTGTTTGCCCTGCGCCCCACGTGAATGGAGATTGTTCCTATAGGGCTAATGACCTTATATTGTAATTTAGATTGTGTTGTGCTTGTGGAAGTGTGCGGCTACACCTTTGTTTCTGGTCAAATGATTTTTCTGCATTTTTGTGACAGTCATTCAGT
ATTGTTATTACAAGTCTTATAGCTATACCATGTTCATAAGGCTTCTATAAAATTGGTACCAGAAAACTACGAAAGACGATTTACACCCATCTAGGCAACCTCTGCCAAAAATTATTAACAAGATCCAGTTATGGTCATCATCGAGACCTTCAATTCTACATCTGTGTTTTCAAGTATAGCCAGTTAAGCTATGAAGCAGC
AAAGGC
>TRINITY_DN103924_c1_g1_i8 from sample A5 / Example unspliced isoform:CATAAAACCTAATACGCTGCAGCCGAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCATCCCTCC
AGGCTCTGAGGTTCGATGGAGGAAACAGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGA
GCCTATGGAAGTTTTCCCAGGCAGAGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGG
TATTGTCTACGATGGCCGATGTTGGGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAATAGCATG
CATAGAATGGAACGGCAACTAGTTCCAGAGTATTTTACGGGGAAGTCTAGTGAGCGTACGCCAAAAGTCTACATGGAACTCAGAAATACTATTGTTAGGAAGTATTTGGAAAATCCAGAAAGGGCTCTAACATTAACTGATATTCAGGGGCTGACTAATGTAGACACAAAATATTTGACTAGGATTTTTGAGTTTCTAGA
CCATTGGGGCATCATAAATTACAGTGTAACAAATGATTCAAGGAATAATGGAACTTCATGGGCAGACACTAAAGAGATTTTACAGGAGAACACAAGTGGAGAGGTACAAATCCCACCTGGCTCATTGAGGAGTATCCAGAGTTTGATTCGTTTTGAGGCACCTCATTCTAAGTTCAGGCCAGCTGATGTTTCTGTTTCAT
CTGGATGCCCTAGTGGAGTTATTGCTGATTTGGATTGTCGGATTCAGGAGCGTATTTTAGAACATCGATGTAGTTCCTGCTCAAAATACTGTTCTGAAATTTTTTATCAGTCTCAGAAAGAGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGG
ATGGATGCTACAAAAGATGCAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGCATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGA
TATCCCTGACACTGGCTTAAAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGAAATTCTGGAGgtattttgaatttcttctgcttgcattcatggtatggaattgaatttgatttagaatagggtggcaagcatgtttcagatgcatcagtggatataagctgtt
gtttttaaacttttttcagGTTCTTGCTCTGCAGAACTCGAATCCGAAAACAGAATTGCATTTGCAAATTCTAGTAATCCAGTCATGGCCCTGGTTGCCTTCCTAGCTTCTGCAATAGGACCACGTGTAGCTGCAGCTTGTGCACATGCGGCTTTAACTGCATTATCCAAAGATGACTGCACTACAGGAAATATTGGAGA
TAGCTCCTTACATAAAGAAGGTTATGCTCGCGGTGACAGGCTGATTTCAGAGAATGTGCAGAGAGAAGATGGGAAACAGGTAGCTGTTTCAAGTTCGATTCAACAACGAGACCATGAAAAAGAGGAATCCCAGGTAGTGCAAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCGAAAAGGTAAAATTGG
CTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCCAACGTCTTGCAGCAAGTATAGTGTCTAGTCAGTTAAAGAGAACCGAGATAAAATTGAAGCAGTTTGCAGAGATTGAGTCTGTGTTGATGAAGGAATGTGAACAGGTTGAAAGGCAAAGACAGAGATTA
ACAGCAGAATGGGTTCGTCTCATGTCAAGTCATTTTGGACCTGGTGGATCATCTACATTGGCTGCAGGACCTGTAGCAGTATCTGCAATGAATAATAGGCCTGTAATTTCAGCTTCTGTTCCATCAGCTCCCCATTCTGGTTATGTCCCTTCGTCTCATCAAGCTATGCCTTTCATGGCTAGACCATCTATGTTTTCATT
TGGACCAGGTGGTGCAGGATCATCTATGCCCTTGTCTACAATGCAGTCCTTTTCAGGTGGAGCCCCTGGCTCTGTGATGATGGGGTCCAGTGCTACAAATTCCAATGTTGCTCACAACATGTTGAGACCTGTCACTGGAACTAACACAAGTACAAATTAAATACAAACTGTCTGCAAGCATCGATGTATTGTACATCCAT
TGTTTGAGGTGTTTGCATATTTTTCTATAGTTTGTATTCTAGTATGCTCAAAGGGCATTTTTACCAATTTTTGGTTCATTCTTTGTTGATCACTGACATGCATGGCCCGTGACAAGACAGTAGCTGTGACATGCAAGGGAAGTTCTGTTAATATTTGCATGAGCCCTTGTTTGCCCTGCGCCCCACGTGAATGGAGATTG
TTCCTATAGGGCTAATGACCTTATATTGTAATTTAGATTGTGTTGTGCTTGTGGAAGTGTGCGGCTACACCTTTGTTTCTGGTCAAATGATTTTTCTGCATTTTTGTGACAGTCATTCAGTATTGTTATTACAAGTCTTATAGCTATACCATGTTCATAAGGCTTCTATAAAATTGGTACCAGAAAACTACGAAAGACGA
TTTACACCCATCTAGGCAACCTCTGCCAAAAATTATTAACAAGATCCAGTTATGGTCATCATCGAGACCTTCAATTCTACATCTGTGTTTTCAAGTATAGCCAGTTAAGCTATGAAGCAGCAAAGGC
Intron 7 GTTTGCATAC ... GGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.77 | 151.2 | 1 | 20 |
| A2 | 13.48 | 155.8 | 0 | 24 |
| A3 | 16.08 | 147.6 | 0 | 28 |
| A4 | 20.4 | 145.2 | 0 | 37 |
| A5 | 14.08 | 55.4 | 0 | 9 |
| A6 | 14.55 | 296 | 0 | 50 |
| A7 | 16.18 | 380 | 0 | 73 |
| A8 | 18.69 | 290 | 0 | 66 |
| A9 | 20.14 | 316.4 | 0 | 79 |
| A10 | 12.73 | 250.4 | 0 | 36 |
>TRINITY_DN124127_c1_g1_i15 from sample A1 / Example spliced isoformCCACACACATAAAACCTAATACGCTGCAGCCGAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCA
TCCCTCCAGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGAGCCTATGGAAGTTTTCCCA
GGCAGAGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGGTATTGTCTACGATGGCCGA
TGTTGGGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAATAGCATGCATAGAATGGAACGACAAC
TAGTTCCAGAGTATTTTACTGGGAAGTCTAGTGAGCGTACGCCAAAAGTCTACATGGAACTCAGAAATACTATTGTTAGGAAGTATTTGGAAAATCCAGAAAGGGCTCTAACATTAACTGATATTCAGGGGCTGACTAATGTAGACACAAAATATTTGACTAGGATTTTTGAGTTTCTAGACCATTGGGGCATCATAAAT
TACAGTGTAACAAATGATTCAAGGAATAATGGAACTTCATGGGCAGACACTAAAGAGATTTTACAGGAGAACACAAGTGGAGAGGTACAAATCCCACCTGGCTCATTGAGGAGTATCCAGAGTTTGATTCGTTTTGAGGCACCTCATTCTAAGTTCAGGCCAGCTGATGTTTCTGTTTCATCTGGATGCCCTAGTGGAGT
TATTGCTGATTTGGATCGTCGGATTCAGGAGCGTCTTTTAGAACATCGATGTAGTTCCTGCTCAAAATACTGTTCTGAAATTTTTTATCAGTCTCAGAAAGAGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGGATGGATGCTACAAAAGATG
CAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGCATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGATATCCCTGACACTGGCTTA
AAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGAAATTCTGGAGGTTCTTGCTCTGCAGAACTCGAATCCGAAAACAGAATTGCATTTGCAAATTCTAGTAATCCAGTCATGGCCCTGGTTGCCTTCCTAGCTTCTGCAATAGGACCACGTGTAGCTGCAGCTTG
TGCACATGCGGCTTTAACTGCATTATCCAAAGATGACTGCACTACAGGAAATATTGGAGATAGCTCCTTACATAAAGAAGGTTATGCTCGCGGTGACAGGCTGATTTCAGAGAATGTGCAGAGAGAAGATGGGAAACAGGTAGCTGTTTCAAGTTCGATTCAACAACGAGACCATGAAAAAGAGGAATCCCAGGTAGTGC
AAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCGAAAAGGTAAAATTGGCTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCCAACGTCTTGCAGCAAGTATAGTGTCTAGTCAGTTAAAGAGAACCGAGATAAAATTGAAGCAGTTTGCA
GAGATTGAGTCTGTGTTGATGAAGGAATGTGAACAGGTTGAAAGGCAAAGACAGAGATTAACAGCAGAATGGGTTCGTCTCATGTCAAGTCATTTTGGACCTGGTGGATCATCTACATTGGCTGCAGGACCTGTAGCAGTATCTGCAATGAATAATAGGCCTGTAATTTCAGCTTCTGTTCCATCAGCTCCCCATTCTGG
TTATGTCCCTTCGTCTCATCAAGCTATGCCTTTCATGGCTAGACCATCTATGTTTTCATTTGGACCAGGTGGTGCAGGATCATCTATGCCCTTGTCTACAATGCAGTCCTTTTCAGGTGGAGCCCCTGGCTCTGTGATGATGGGGTCCAGTGCTACAAATTCCAATGTTGCTCACAACATGTTGAGACCTGTCACTGGAA
CTAACACAAGTACAAATTAAATACAAACTGTCTGCAAGCATCGATGTATTGTACATCCATTGTTTGAGGTGTTTGCATATTTTTCTATAGTTTGTATTCTAGTATGCTCAAAGGGCATTTTTACCAATTTTTGGTTCATTCTTTGTTGATCACTGACATGCATGGCCCGTGACAAGACAGTAGCTGTGACATGCAAGGGA
AGTTCTGTTAATATTTGCATGAGCCCTTGTTTGCCCTGCGCCCCACGTGAATGGAGATTGTTCCTATAGGGCTAATGACCTTATATTGTAATTTAGATTGTGTTGTGCTTGTGGAAGTGTGCGGCTACACCTTTGTTTCTGGTCAAATGATTTTTCTGCATTTTTGTGACAGTCATTCAGTATTGTTATTACAAGTCTTA
TAGCTATACCATGTTCATAAGGCTTCTATAAAATTGGTACCAGAAAACTACGAAAGACGATTTACACCCATCTAGGCAACCTCTGCCAAAAATTATTAACAAGATCCAGTTATGGTCATCATCGAGACCTTCAATTCTACATCTGTGTTTTCAAGTATAGCCAGTTAAGCTATGAAGCAGCAAAGGATAAAATGGAAAAT
TATATGCTCAATTTTTGCCACACCAAACTATTTTGGGGTAAAATTCAGTTAGTATGGAATCTTCCCTTAGTTTTTGATAGTTTAGATGATCCTTGCTCTATATATACGTGTGGAAGCTGCAGTGTTTCTAAACATGCTCAAGTCTCAAGAACTTTCTACTGACAGTCTTGTCCACCAGTGAGGTTCAAATTTGTTATTGT
ATAAAATTCTTTTTTCAAGAGCAAATTGACAAAAATATTAATTCGCCATTGTTAGGCCTCTGACAATAGTTCAATATTTATGCTTTATAAATCCTTGATTCAAGCAGTTGATAACTGCATAGTGAACTGGGTTCATAAGATTTATTCGTCTTCCTGCT
>TRINITY_DN124127_c1_g1_i2 from sample A1 / Example unspliced isoform:GTTCGATTCAACAACGAGgtttgcatacctgtagatttatttatgggaagcttatattattttctaatgatttctttgtgtctaaaatgtataatttgatggataactacacatgggttttgcagACCATGAAAAAGAGGAATCCCAGGTAGTGCAAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCG
AAAAGGTAAAATTGGCTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCCAACGTCTTGCAGCAAGTATAGTGTCTAGTCAGGTTATATCTAAAGCCTTTATATTCTATGGTGTCACTCAAGTTCATTTAAATTCACTTTTTATATTTAAAGATTTTATATTC
AGTTGTATGAGGTGCAAAACACACAAAATCTGGACAAAAACAATAAGGCAAGCAACTATGATAAGAAATTTTCTTCATAGATCACTGCTTCTATTGGATAATGTTGCCATATGCC
Intron 8 GCTCTGAGGT ... GAGGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.38 | 161.5 | 114.5 | 123.2 |
| A2 | 42.46 | 124.4 | 91.5 | 92.2 |
| A3 | 43.4 | 213.7 | 158.5 | 169.1 |
| A4 | 39.43 | 136.4 | 74.5 | 103.2 |
| A5 | 41.5 | 89.6 | 61.7 | 65.5 |
| A6 | 40.95 | 70 | 47.6 | 49.5 |
| A7 | 40.88 | 172.6 | 109.5 | 129.2 |
| A8 | 39.42 | 42.8 | 22.9 | 32.9 |
| A9 | 42.95 | 110.8 | 82.5 | 84.4 |
| A10 | 41.44 | 184.3 | 130.2 | 130.8 |
>TRINITY_DN124127_c1_g1_i15 from sample A1 / Example spliced isoformCCACACACATAAAACCTAATACGCTGCAGCCGAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCA
TCCCTCCAGGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGAGCCTATGGAAGTTTTCCCA
GGCAGAGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGGTATTGTCTACGATGGCCGA
TGTTGGGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGACTGGTTTTCACTTAATAGCATGCATAGAATGGAACGACAAC
TAGTTCCAGAGTATTTTACTGGGAAGTCTAGTGAGCGTACGCCAAAAGTCTACATGGAACTCAGAAATACTATTGTTAGGAAGTATTTGGAAAATCCAGAAAGGGCTCTAACATTAACTGATATTCAGGGGCTGACTAATGTAGACACAAAATATTTGACTAGGATTTTTGAGTTTCTAGACCATTGGGGCATCATAAAT
TACAGTGTAACAAATGATTCAAGGAATAATGGAACTTCATGGGCAGACACTAAAGAGATTTTACAGGAGAACACAAGTGGAGAGGTACAAATCCCACCTGGCTCATTGAGGAGTATCCAGAGTTTGATTCGTTTTGAGGCACCTCATTCTAAGTTCAGGCCAGCTGATGTTTCTGTTTCATCTGGATGCCCTAGTGGAGT
TATTGCTGATTTGGATCGTCGGATTCAGGAGCGTCTTTTAGAACATCGATGTAGTTCCTGCTCAAAATACTGTTCTGAAATTTTTTATCAGTCTCAGAAAGAGACAGATGTAATATTATGCACAGAATGTTTCAATGATGGGAAACCTGTTATTGGAATGGCAACAGTTGATTTTGTTCGGATGGATGCTACAAAAGATG
CAGGGGATCTTGATGGCAATAACTGGACCGATCAGGAGACACTGCTGCTTCTTGAGGCATTGGAAATATATAATGAGAACTGGAATGAAATTGCAGAGCATGTAGGAACTAAGTCAAAAGCCCAATGCATGCTACATTTCATTCGCCTACCAATGGAGGATGGTTTGCTTGACAACATTGATATCCCTGACACTGGCTTA
AAGCCTCATCCTTCAGATGAAGCTATTGAAACTGGAAAAGTGTCTTCTTTAGATGTGAAATCCAATGGAAATTCTGGAGGTTCTTGCTCTGCAGAACTCGAATCCGAAAACAGAATTGCATTTGCAAATTCTAGTAATCCAGTCATGGCCCTGGTTGCCTTCCTAGCTTCTGCAATAGGACCACGTGTAGCTGCAGCTTG
TGCACATGCGGCTTTAACTGCATTATCCAAAGATGACTGCACTACAGGAAATATTGGAGATAGCTCCTTACATAAAGAAGGTTATGCTCGCGGTGACAGGCTGATTTCAGAGAATGTGCAGAGAGAAGATGGGAAACAGGTAGCTGTTTCAAGTTCGATTCAACAACGAGACCATGAAAAAGAGGAATCCCAGGTAGTGC
AAACCAAGAACGATATATCCATTGCTACATCATCTTTGCCTGCCGAAAAGGTAAAATTGGCTGCCATGGCAGGCTTGTCTGCTGCAGCATTGAAGGCAAAGCTCTTTGCTGACCAGGAGGAACGTGAGATCCAACGTCTTGCAGCAAGTATAGTGTCTAGTCAGTTAAAGAGAACCGAGATAAAATTGAAGCAGTTTGCA
GAGATTGAGTCTGTGTTGATGAAGGAATGTGAACAGGTTGAAAGGCAAAGACAGAGATTAACAGCAGAATGGGTTCGTCTCATGTCAAGTCATTTTGGACCTGGTGGATCATCTACATTGGCTGCAGGACCTGTAGCAGTATCTGCAATGAATAATAGGCCTGTAATTTCAGCTTCTGTTCCATCAGCTCCCCATTCTGG
TTATGTCCCTTCGTCTCATCAAGCTATGCCTTTCATGGCTAGACCATCTATGTTTTCATTTGGACCAGGTGGTGCAGGATCATCTATGCCCTTGTCTACAATGCAGTCCTTTTCAGGTGGAGCCCCTGGCTCTGTGATGATGGGGTCCAGTGCTACAAATTCCAATGTTGCTCACAACATGTTGAGACCTGTCACTGGAA
CTAACACAAGTACAAATTAAATACAAACTGTCTGCAAGCATCGATGTATTGTACATCCATTGTTTGAGGTGTTTGCATATTTTTCTATAGTTTGTATTCTAGTATGCTCAAAGGGCATTTTTACCAATTTTTGGTTCATTCTTTGTTGATCACTGACATGCATGGCCCGTGACAAGACAGTAGCTGTGACATGCAAGGGA
AGTTCTGTTAATATTTGCATGAGCCCTTGTTTGCCCTGCGCCCCACGTGAATGGAGATTGTTCCTATAGGGCTAATGACCTTATATTGTAATTTAGATTGTGTTGTGCTTGTGGAAGTGTGCGGCTACACCTTTGTTTCTGGTCAAATGATTTTTCTGCATTTTTGTGACAGTCATTCAGTATTGTTATTACAAGTCTTA
TAGCTATACCATGTTCATAAGGCTTCTATAAAATTGGTACCAGAAAACTACGAAAGACGATTTACACCCATCTAGGCAACCTCTGCCAAAAATTATTAACAAGATCCAGTTATGGTCATCATCGAGACCTTCAATTCTACATCTGTGTTTTCAAGTATAGCCAGTTAAGCTATGAAGCAGCAAAGGATAAAATGGAAAAT
TATATGCTCAATTTTTGCCACACCAAACTATTTTGGGGTAAAATTCAGTTAGTATGGAATCTTCCCTTAGTTTTTGATAGTTTAGATGATCCTTGCTCTATATATACGTGTGGAAGCTGCAGTGTTTCTAAACATGCTCAAGTCTCAAGAACTTTCTACTGACAGTCTTGTCCACCAGTGAGGTTCAAATTTGTTATTGT
ATAAAATTCTTTTTTCAAGAGCAAATTGACAAAAATATTAATTCGCCATTGTTAGGCCTCTGACAATAGTTCAATATTTATGCTTTATAAATCCTTGATTCAAGCAGTTGATAACTGCATAGTGAACTGGGTTCATAAGATTTATTCGTCTTCCTGCT
>TRINITY_DN124127_c1_g1_i7 from sample A1 / Example unspliced isoform:GCAGAGGAAGCCAAAAGTCCATTTTGTGTTAAACATGTTTGATTTTGCTCAAATTTAATGTTGGTAAGATGAAGCATGCATCACTATTTAACAGTTTATAATATTTGCAGACCATTGCGAATGACCCATGAAAACCATTATTTAGAAACACCAAAACTCTTTCACTTTTCCACACACATAAAACCTAATACGCTGCAGCC
GAAGAAAATTCGTTCAAAGAATTTTGACTCGACGCGAATCGAACCATGGACCACGCATTCCCAGCAAATCAAACTTCCGTGATGGACTTCTCTCGGCACTGACAGACCGGAAAACAGCAGAGGCCACTGCAGAGCATAGCCATGTCAGCGGCTGCCCCATCTCCTTCCATCCCTCCAGgctctgaggttcgatggaggaa
acagGGGCAATAAGGATCAAATTCAAACGAAAACGGGAGCCTACAGCCATTCTCTCGAGAGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATAATGCCGGAGACCAGAGAAACCCCATTAGTCAGAAGGCACGCGAGGGAAGGCTCACCCATTCCAGCTTCAGAGACTGGGGAGCCTATGGAAGTTTTCCCAGGCAG
AGGCGTGCAGGTTTCTGATTTTCCGGTGGTTATCAAGCAGAAACTGGGTCGCCCTCATTCGTCAGTTTTGGCCCTAATTGCAAGCGACCGCGCCATTTATTCGTCCGAATTGCTGGACGAGCGAGTGAAGTCTTCTGTACCGTGCTTGGAAAATATCTCTCATGGCCAAATACAGGTATTGTCTACGATGGCCGATGTTG
GGTTCTCTGGAAGTTCCGATCAGCAGGAGAAACCTGAGGTGGGTTCATCGGTTTGTGGGTCGTTGAGCATGATTGATGTTAATGGCGTGGTTAAGCGCTTCAAGGCGTCGGAGCACGCTGAGGAGCGTTTCTACGCCTTTCCAATGCATGCAGGTGAGCGGCTATTTTATAATTTGTTTTTTTTACATTTTGTCGGACAT
CCCTTTTGACTGGAGCGGGTACAGAATTCCTTACTCTAACAGCTTTACAACCAGAATGCATTCCGCTACCAGCTGAAGGGCATCTATTCAGTCGAATTCATCCTACTTCCAGCTGGCGTAATTTTGCAAAGTCCACATTATTGGGGGGACCACATCATTCTCTGTTCCATTAAATTTACCCAGTAATTCTTACTTGCCTA
ATTTGCAAAGACCCCATTATCACGGGGCCACCTTTTTTTATTCCATCAAATTCATCAAGACCTCTACCTGGCCTCACTTACAAATACATCATTATCATGGGGGCCACCATTAGCAGCATTCTGCATCTGATCAAGGGGACCTCCAATAACAATACTCCACATTACCACAGAACCAGTGTTGCATCCTCAACATGACCCAG
ACCTTAGAAAGACTCGGTCTACGACATTAACGCAAGGAGCGTGTCCATTGGGTTTTGAACCTGGGTCATCATCATCATCATCATGGAAATTGCTCCAACTTGCCACTAGACCATCATCATCATGGCAAATGCTCCAACTTCCCTCTAGACCACAGCCTCTCCACTATGTTGAACTTGAGTTTTCATCTAATTGGACTTTT
GGATACAGTAGCATGTTTGGAAAAAAATTAAAATTGAAACTAGCCCAAACCCATATAAACCCTGGTGTGTTGTGCACCTTGAGGTTGTAAAGCTCGAGGTTTCATATTCATATTCACTGCACCCAAAGAAACAATTAGATTTGATGCACAGTTACACGGACTGTTGTAGAGTTGATGCATGTCTAGATTCAGTGCACTGT
TACACTAACACAAACATACACAGGATTGATGGATGACCCTCCTCCCCCCCCACCGGGCTGTATATTGCATCTCACATAGTGCAAAAATTGCAAAAAGTGGGTATTGAATTTTTTTTTTGGTTTATGAAAGTACAAATAATTGTAAAAGAGAAATTCATCACATCAGCAGAGTTAGATTATAAGTTCTTCCTCCTCCCTTT
TGCAAAATTGTAGAATGATGCCCATTTAGCAGTGCTCTCTGCTTCCTTGCAAAATTTGGAAGAATACCGAGCATAAAAACTAGCACAGATGCATCTAAGCTCGGGTTTGATCCAAAGCATTAAAAACTGGAACTGGGACTGCAACCGGCTGAGGGTCAGATCAGGACTGGACTGGAAAAAGTGACCAATGAACCTGTTTA
TGAAAAATTACATAAATCTGAAAGTTTTAATAAAAAAAAATATATTCATGTACATCAATGTAAATCTGAACTACGAGACACCAAACATGCAATAGAGGGGGAGTGTCATTATATAACACAAACTTAGGGTTTAGGAGGGGTGGGGTGCTGTTTTCTTTCGGGAAAACGTGTCTGCACCGGTCAAACCTGTTTATGAAACG
GTTGAACTGGTCATTCCGGTTCACAAACTAGTCCAGGTCCCCAAGTGGTGAACTGGTCTGGACCAGCCGGTTCCTGTACTATACGGCTGTTTTTTAATACACTGGGACTCTGATATGCACCTCAAGGTTCCTCAAGGTGTCTGCACCGGTCAAACCAGTTTATGAAACAGTTGAACTGGTCATTCCGGTTCACAAACTAG
TCCAGGTCCCCAAGGGGTGAACTGGTCTGGGCCAGCCGGTTCCTGTACTATATGGCTGGTTTTTAATACACTGGGACTCGATATGCACCTCAAGGTTGCAAAGCTATAGCTTGAATCTCATGTTCAAATGTTTGATTTGTTGGCTATTTGTGTGAACTAGTGATATGCTTCCTTGAGCTTCAGAGCGTCATGCTGCATAT
CAGATCTGGGTTTAGTTAGGTTTGCGCTATTGTCCATCTTTAATGCATCCAATGCACTGCCTACATTCAATGCAGTGCTACACACATAGGCACACACACAAACGCATGTAGTTGATGGATCATGCCCACCCCCACCTGGGCTGTAGAATGCACCTTGCTTCTCTGGATGCAACTATGTCTGGAAAAAATGGTTACAACAC
ATATGCAATAAATTATTGTGAATCTGTGATGTTTTAGCTTGAGGTATCTTCGCTGCTATCCATCCCAGATTCCAGAGTCATAAGGGCCGAGCATAATGTGACATGTAGGGTCAATTGTGAAAAATTGACTCTGCCAGTATGGAATGCCAATAAGGAGTCTTTATATGCCATATGGAAACAACACTACAATAGATAGAGTA
TACCAAGCATAAATTTCTAGTTTGAGGCATCTGGCTGTCATCTAGCAGAGGAAGCCAAAAGTCCATTTTGTGTTAAACATGTTTGATTTTGCTCAAATTTAATGTTGGTAAGATGAAGCATGCATCACTTTTTAACAGTTTATAATATTTGCAGACCATTGCAAATGATCCATGAAAACCATTATTTAGAAACACCAAAA
CTCTGTGATGTTTTAGCTTGAGGTATCTTCGCTGCTATCCATCCCAGATTCCAGAGTCATAAGGGCCGAGCATAATGTGACATGTAGGGTCAATTGCGAAAAATTGACTATGTCTGTATGGAAGGCCAATATGAAGGCCGTATGGCAACAACACTACAATAGATAGAGTATACCAAGCATAAATATCAGTTTGAGGCATC
TGGTTGTCATCTAGCAGAGGAAGCCAA
Intron 9 GTACTACGCC ... GAGGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.33 | 109 | 13 | 80 |
| A2 | 32.81 | 86 | 12 | 42 |
| A3 | 39.5 | 121 | 5 | 79 |
| A4 | 45.51 | 91 | 18 | 76 |
| A5 | 35.96 | 57 | 9 | 32 |
| A6 | 30.86 | 56 | 9 | 25 |
| A7 | 34.55 | 125 | 10 | 66 |
| A8 | 41.18 | 30 | 1 | 21 |
| A9 | 31.48 | 74 | 4 | 34 |
| A10 | 33.16 | 129 | 10 | 64 |
>TRINITY_DN43264_c2_g1_i11 from sample A6 / Example spliced isoformTAAACTTAATATGCTCTAGCGGACGAAAATCGGTTCAAAGAATTTTGACTCTACGTTAATCGAACCATGGACCAAGCAATCCCGGCAAATCAAACTCCGCGGTGGACTTCTCTGGGCACTGACAGACCTGAAAACATCAGAGGCCACTGCAGAGCATAGCCATTTCAGCAGCTGCCTCGTCTTCTTACATCCCTCCAGGG
GCAATAAGGATCAAATTCAAACGAAAACAGGAGCCTACAGCCATTCTCTCTAGGGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATCCTGCAGGAGACAAGAGAAAACCCATCAGTCAAAAGGCACGTGAGGGAAGGCTCACCTGTTCCAGCTTCAGAGACTGGGGAGCCAATGGAAGTTTTCCCAGGCAGAGGGGT
GCAGATTTCTGATTTTCTGGTCGTTATCAAGTAGAAACAGGGTTGCCCTCATTCGTCTGATTTTTGGCACTGATTGCAAGCGACCGCGCCATTCATTCGTTCGAATTGCTGGACGAAAAGTCTTCTGTACCGTGCTCGGAAAATATCTCCCTTGGCCAAATACAGGTATTGTCTACGATGGCCGATGATGGGTTCTCTGG
AAAGGCCGAGGTGGGTTCGTCGGTTTGTGGGTCATTGAGCACGATTGATGTTATGGCGTGGTTAAGCAAGCATAGATAGATAGAGTATGCCAAACATAAATTTTAGTTTGAGGCATCTGGCTGTCATCTAGCAGATGAAGCCAAATGCCCATTGTGTTAAACATGTTTGATTTTGCTCAAATTTAATGTAGGTAAGATGA
AGCATACATCACTGTTTAATAGTTTATAATATTTGCATACCATTGCGAATGACCCATAAAAAACATTATTTAGAAACGCC
>TRINITY_DN43264_c2_g1_i8 from sample A6 / Example unspliced isoform:TAAACTTAATATGCTCTAGCGGACGAAAATCGGTTCAAAGAATTTTGACTCTACGTTAATCGAACCATGGACCAAGCAATCCCGGCAAATCAAACTCCGCGGTGGACTTCTCTGGGCACTGACAGACCTGAAAACATCAGAGGCCACTGCAGAGCATAGCCATTTCAGCAGCTGCCTCGTCTTCTTACATCCCTCCAGgt
actacgcccttgttcttcacccacagctttcactttttaattttcggaaaaatattcaatttttctgaaggctctgaggttcgatggaggaaacagGGGCAATAAGGATCAAATTCAAACGAAAACAGGAGCCTACAGCCATTCTCTCTAGGGATGGAAGCGCTCCTCAGAGAGTTGAAGAGCCAATCCTGCAGGAGACA
AGAGAAAACCCATCAGTCAAAAGGCACGTGAGGGAAGGCTCACCTGTTCCAGCTTCAGAGACTGGGGAGCCAATGGAAGTTTTCCCAGGCAGAGGGGTGCAGATTTCTGATTTTCTGGTCGTTATCAAGTAGAAACAGGGTTGCCCTCATTCGTCTGATTTTTGGCACTGATTGCAAGCGACCGCGCCATTCATTCGTTC
GAATTGCTGGACGAAAAGTCTTCTGTACCGTGCTCGGAAAATATCTCCCTTGGCCAAATACAGGTATTGTCTACGATGGCCGATGATGGGTTCTCTGGAAAGGCCGAGGTGGGTTCGTCGGTTTGTGGGTCATTGAGCACGATTGATGTTATGGCGTGGTTAAGCAAGCATAGATAGATAGAGTATGCCAAACATAAATT
TTAGTTTGAGGCATCTGGCTGTCATCTAGCAGATGAAGCCAAATGCCCATTGTGTTAAACATGTTTGATTTTGCTCAAATTTAATGTAGGTAAGATGAAGCATACATCACTGTTTAATAGTTTATAATATTTGCATACCATTGCGAATGACCCATAAAAAACATTATTTAGAAACGCC