sp|Q94JY4|BRK1_ARATH ----> Protein BRICK 1

Intron 1 GTGAGGCATG ... GGCCGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	1
A2	100	0	0	1
A3	80	1	3	5
A4	100	0	0	1
A5	-1	0	0	0
A6	73.33	2	1	10
A7	73.91	3	6	11
A8	86.67	1	8	5
A9	100	0	3	10
A10	84.62	1	2	9

>TRINITY_DN22701_c0_g1_i2 from sample A7 / Example spliced isoform

CTTGCCACCGAATCTTCTAATGGGCAAACCCTAAAAATTTAGGGCAAAGTGAGGTCGATGATGATGTTTACAGAGACGTGCAGTCAAAGCCAATTTATCATCGAGAGATTATGAGGCCGACTGGAACAACAGACAGCCCAGCACTTCTTTCGGCCTCAACGCCAGAAAGATGTTCGAATTTGTCACTCAATACGATGCTG
CTGCGAGGTCTAAGCTCGTTGATTTGAACGAGAAGCTGAGTAATTTGGAGCGACAGATGGAGGTCCTGGAAGCCCATATGGCCACAGCCATAAATTCCTCTGATCAGTTTTAGCGGCGGTCTGCTAAAATTTATGAGCACTGATCTTCGGGGTTGGGAATTATCAATAGTATGGCTGTAACTGATTTACTAAATATATTT
GAGAGGGGGATGAATCAATAGAGTTGTTAGTGGCTCTTTCTGTACATTATTGGGATTGGGAATGGCTTCCAAGTTATTTTTGTATGTTATATATATCAAATTAATTAATTATTTTTCCAAGAG

>TRINITY_DN22701_c0_g1_i1 from sample A7 / Example unspliced isoform:

CTTGCCACCGAATCTTCTAATGGGCAAACCCTAAAAATTTAGGGCAAAGTGAGGTCGATGATGATGTTTACAGAGACGTGCAGTCAAAGCCAATTTATCATCGAGAGATTATGAGgtgaggcatgacgtactatccgctcaagctggaactttcaagaaatgtcaacgtcaaatttctcattaaagatcccatggctcgg
ccgcctgagcatctattcgagcaatcccaatagcaataccctccgccacagtcaatttcctccatttcccatctctatttttcttgtccctgctctgtaatacgcaagatcatgtctttcaaaaaccctaacaacattgtaaatgtcggcatggccgtgcagGCCGACTGGAACAACAGACAGCCCAGCACTTCTTTCGG
CCTCAACGCCAGAAAGATGTTCGAATTTGTCACTCAATACGATGCTGCTGCGAGGTCTAAGCTCGTTGATTTGAACGAGAAGCTGAGTAATTTGGAGCGACAGATGGAGGTCCTGGAAGCCCATATGGCCACAGCCATAAATTCCTCTGATCAGTTTTAGCGGCGGTCTGCTAAAATTTATGAGCACTGATCTTCGGGGT
TGGGAATTATCAATAGTATGGCTGTAACTGATTTACTAAATATATTTGAGAGGGGGATGAATCAATAGAGTTGTTAGTGGCTCTTTCTGTACATTATTGGGATTGGGAATGGCTTCCAAGTTATTTTTGTATGTTATATATATCAAATTAATTAATTATTTTTCCAAGAG

Intron 2 GTCAATTTCC ... GGCCGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	0	1
A2	100	0	1	1.5
A3	78.89	1	3	4.5
A4	100	0	1	1
A5	-1	0	0	0
A6	100	0	5	9
A7	75.73	4	15	10
A8	78.89	1	3	4.5
A9	66.67	4	6	10
A10	84.62	1	2	9

>TRINITY_DN23121_c0_g1_i2 from sample A9 / Example spliced isoform

AACCTTGCCACCGAATCTTCTAATGGGCAAACCCTAAAAATTTAGGGCAAAGTGAGGTCGATGATGATGTTTACAGAGACGTGCAGTCAAAGCCAATTTATCATCGAGAGATTATGAGGTGAGGCATGACGTACTATCCGCTCAAGCTGGAACTTTCAAGAAATGTCAACGTCAAATTTCTCATTAAAGATCCCATGGCT
CGGCCGCCTGAGCATCTATTCGAGCAATCCCAATAGCAATACCCTCCGCCACAGCCGACTGGAACAACAGACAGCCCAGCACTTCTTTCGGCCTCAACGCCAGAAAGATGTTCGAATTTGTCACTCAATACG

>TRINITY_DN23121_c0_g1_i3 from sample A9 / Example unspliced isoform:

AACCTTGCCACCGAATCTTCTAATGGGCAAACCCTAAAAATTTAGGGCAAAGTGAGGTCGATGATGATGTTTACAGAGACGTGCAGTCAAAGCCAATTTATCATCGAGAGATTATGAGGTGAGGCATGACGTACTATCCGCTCAAGCTGGAACTTTCAAGAAATGTCAACGTCAAATTTCTCATTAAAGATCCCATGGCT
CGGCCGCCTGAGCATCTATTCGAGCAATCCCAATAGCAATACCCTCCGCCACAgtcaatttcctccatttcccatctctatttttcttgtccctgctctgtaatacgcaagatcatgtctttcaaaaaccctaacaacattgtaaatgtcggcatggccgtgcagGCCGACTGGAACAACAGACAGCCCAGCACTTCTTT
CGGCCTCAACGCCAGAAAGATGTTCGAATTTGTCACTCAATACGATGCTGCTGCGAGGTCTAAGCTCGTTGATTTGAACGAGAAGCTGAGTAATTTGGAGCGACAGATGGAGGTCCTGGAAGCCCATATGGCCACAGCCATAAATTCCTCTGATCAGTTTTAGCGGCGGTCTGCTAAAATTTATGAGCACTGATCTTCGG
GGTTGGGAATTATCAATAGTATGGCTGTAACTGATTTACTAAATATATTTGAGAGGGGGATGAATCAATAGAGTTGTTAGTGGCTCTTTCTGTACATTATTGGGATTGGGAATGGCTTCCAAGTTATTTTTGTATGTTATATATATCAAATTAATTAATTATTTTTCCAAGAGACTCCAGCCCACTCATCTAAGTGAAAT
ATAGCTTTTGGGAGG