NA ----> NA
Intron 1 GTATGAATAT ... AATCATATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.98 | 18 | 15 | 10 |
| A2 | 71.43 | 2 | 6 | 4 |
| A3 | 75.76 | 4 | 7 | 18 |
| A4 | 73.33 | 2 | 10 | 1 |
| A5 | 55.56 | 2 | 5 | 0 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 80 | 1 | 2 | 6 |
| A8 | 33.33 | 4 | 2 | 2 |
| A9 | 30.77 | 9 | 6 | 2 |
| A10 | 81.82 | 1 | 1 | 8 |
>TRINITY_DN92771_c0_g1_i2 from sample A1 / Example spliced isoformTGGCAGAGGACATAATTATCTCCACTCGAGGAGCTGAGTGGTGGTAGAGGGAGGAATGAACGTTTTTTTATTTTTATCCGCGTTGTTTTAGTTGTGAGTGGATCAGAAATCTGCGGATAATATGGCAAAAATCTGCTGGTATTTTGCATATGATATAAGTATGGAGCCTTGGGTTCTCTACAGATGTTGTAGATAACGGG
GCATAAGGTAAGGATTATAACATGTGGCTTCGTCTTATGCCGATATTGCATGCACGGGTTGCTAACAGTTTTTGGATTGAATCTTCTGGTTGGAATCAACATTGATTTATAACTGGAATATATATCAGCATACCTCAAACATGTTGCAAAAGAACTGACAGATGGATTGGCCGATGTCCAACGGCGAATTTAAAGAAAGT
GAGCGAGGTCGCTTGAAGGGGAAGATTATGCCTCTGAAAATATGCAGCAGTTGTTCTTGTGAGTCTTCTGTCTTCTACTTTGTAGAAAAACGTGGATTTTCCTGAGTTCATTCTGGTACTCGAGCAGTAGATAATCGTCTTTGACCCGGGAATCACAATTCTTGAGCTGGCACTTGAATTGGATATGGTTGTAGTGAAGG
GCACTGCTTATGGAATTTGGGATATTTATTCGATAAATATAGCATACCCACATCCATAGCTATGTGCATGTGTGTATAAGTAGGTGATTTGGCTGTGGGTCATCTCGCTGAACTGACAAAAATGGCTGAAAATAATCAGAATAAACGATCTCCTGGAAATAGCGAATATTCTTCTTGGATTTCGCGAACAAAGTATTCTT
CCACTGTATGTTACCGGCTGGATCCTATGAAAAACTCCGCATTTCCAATATCCCGTGCATCGTTGTGCAGCGAAGCTCATCAGATGCATTCGAGATCAACAACCTCAGGGTCATTAAAACCACCTCTATGTCTAGGAGCCCCTCCTTCCCCGACATCATTAGATGCACAATATCCATCCCCCAGATCCAGGTCCTTAGAA
TTTGCATTGCCACAACGGAAAACACTTATTGGGAGCTACGTATCTCCTGGACCTCAAACAACCAGTCCCGAAACAATCTCGTTCTCAAATCAAATAACACTTAATAGGAGATATCCATCACCTGAACCTCAAACAAAGGTTCCAGAAACATTTAAGGAAGCAAGATCAAGAAGCAAACGGTTTTCATCTCCCCAAAGGAA
ATCATCAGACAATATATTGAATAAAGCTGCACACTGGGCCAGATATTGTAACAGAGGCCGCAAATTAATGGATGCATTGACACAAGCCCCCAGCTCTTCTCCTACTTCTCCTATATTTGGCTTCCTTTCACCATCAAGAAGTCCAGAATTCATAGGCAAAGGTTTTAAAAATTCACCTTCATGGTCCAAGTACATTCAGC
AATCAGAAGATTCTATGACAGCAGTAGAAACAGCTCAGGATTGGATGGTGGACTTATCCAAGTTGTTTGTAGGCCAG
>TRINITY_DN92771_c0_g1_i1 from sample A1 / Example unspliced isoform:TGGCAGAGGACATAATTATCTCCACTCGAGGAGCTGAGTGGTGGTAGAGGGAGGAATGAACGTTTTTTTATTTTTATCCGCGTTGTTTTAGTTGTGAGTGGATCAGAAATCTGCGGATAATATGGCAAAAATCTGCTGGTATTTTGCATATGATATAAGTATGGAGCCTTGGGTTCTCTACAGATGTTGTAGATAACGGG
GCATAAGGTAAGGATTATAACATGTGGCTTCGTCTTATGCCGATATTGCATGCACGGGTTGCTAACAGTTTTTGGATTGAATCTTCTGGTTGGAATCAACATTGATTTATAACTGGAATATATATCAGCATACCTCAAACATGTTGCAAAAGAACTGACAGgtatgaatatatttcatttcaatggggcataaagagggg
ttcgaatggggaaaattgattttatgcataaatctgattgcattacatggttttattcacctgtaaatatatattgatggagtgagatcgttgcaactgggaattgggttttgtagattgaaacttattggtggaaaactgctacgcacttgcataatcatagctccgtgcatatctaatttatagtattgcaaatagaa
attggatattatactggttaataagcactgtattgaatcatatagATGGATTGGCCGATGTCCAACGGCGAATTTAAAGAAAGTGAGCGAGGTCGCTTGAAGGGGAAGATTATGCCTCTGAAAATATGCAGCAGTTGTTCTTGTGAGTCTTCTGTCTTCTACTTTGTAGAAAAACGTGGATTTTCCTGAGTTCATTCTGG
TACTCGAGCAGTAGATAATCGTCTTTGACCCGGGAATCACAATTCTTGAGCTGGCACTTGAATTGGATATGGTTGTAGTGAAGGGCACTGCTTATGGAATTTGGGATATTTATTCGATAAATATAGCATACCCACATCCATAGCTATGTGCATGTGTGTATAAGTAGGTGATTTGGCTGTGGGTCATCTCGCTGAACTGA
CAAAAATGGCTGAAAATAATCAGAATAAACGATCTCCTGGAAATAGCGAATATTCTTCTTGGATTTCGCGAACAAAGTATTCTTCCACTGTATGTTACCGGCTGGATCCTATGAAAAACTCCGCATTTCCAATATCCCGTGCATCGTTGTGCAGCGAAGCTCATCAGATGCATTCGAGATCAACAACCTCAGGGTCATTA
AAACCACCTCTATGTCTAGGAGCCCCTCCTTCCCCGACATCATTAGATGCACAATATCCATCCCCCAGATCCAGGTCCTTAGAATTTGCATTGCCACAACGGAAAACACTTATTGGGAGCTACGTATCTCCTGGACCTCAAACAACCAGTCCCGAAACAATCTCGTTCTCAAATCAAATAACACTTAATAGGAGATATCC
ATCACCTGAACCTCAAACAAAGGTTCCAGAAACATTTAAGGAAGCAAGATCAAGAAGCAAACGGTTTTCATCTCCCCAAAGGAAATCATCAGACAATATATTGAATAAAGCTGCACACTGGGCCAGATATTGTAACAGAGGCCGCAAATTAATGGATGCATTGACACAAGCCCCCAGCTCTTCTCCTACTTCTCCTATAT
TTGGCTTCCTTTCACCATCAAGAAGTCCAGAATTCATAGGCAAAGGTTTTAAAAATTCACCTTCATGGTCCAAGTACATTCAGCAATCAGAAGATTCTATGACAGCAGTAGAAACAGCTCAGGATTGGATGGTGGACTTATCCAAGTTGTTTGTAGGCCAG