sp|O80813|YC20L_ARATH ----> Ycf20-like protein
Intron 1 GTGTGCCTTC ... GTTGCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.91 | 10 | 26 | 11 |
| A2 | 63.64 | 4 | 10 | 4 |
| A3 | 60 | 12 | 21 | 15 |
| A4 | 72.73 | 3 | 10 | 6 |
| A5 | 84.62 | 1 | 7 | 4 |
| A6 | 66.04 | 36 | 79 | 61 |
| A7 | 53.51 | 43 | 60 | 39 |
| A8 | 58.88 | 44 | 72 | 54 |
| A9 | 60.77 | 41 | 70 | 57 |
| A10 | 49.13 | 44 | 50 | 35 |
>TRINITY_DN47942_c0_g1_i15 from sample A10 / Example spliced isoformCTCTCGTTGACACGTAACCTCCATCTCTACCACTAAACCGCCACCCACACCTAAAAGCTGTGTTTTGTCCTTTCAAAAGAGTTTTTTCCAGAGAATTGTCCTTTCAAAAGAGTTACTAGGAAGTAAAATCAGGCTACTTCGTTGGTTTCGCGGGTTCAGAACATGGTTTTCTTTGGTGAGGGTTTCAATGGCGTCTTAGG
GTTTGAAAATGAACTTCCCCTCTACCAAATTCCTAAACTCATGGAGGCCAAACCACAGAAAACAATACTATGGCAAATGCCGTGAGATTATTGAAGCCACTACTACAACAAAATTTTCCTTTCAACAACGAATAAACCCAGTTTCATTTTAGGTTTATACACTAAATTGCCATATATATGAAGTGCAATTTTGTAAATTT
GACGTGCAATCCCCGTTCTCGCTTCATTTCTGCGATTAGGATGCAACAGGGACTGATCGAATTTAATATATTTCAAGGAGTTGATAATTCTAGTGCTTGATGGAGCTAAGAGGGCGAGGAATTTGACAATCTCCTTCAAGGTTCGAATCGCAGGGAAGACACTGGTGTTCTTATCTCCTTGGTATGGCTTTGGAAGGGCT
CCACGTTCCATCTCTGTCAAATAGTCATTTAAGCGCAAAAGCATTAGCAACAGTTGCTGTTCCATGTAATGTTGGCAGGAGCTTGGCATTTGGTCAAGGGAGATTTCGGTGTATACGTTGCATCCATAACCGAGGTGCATCTGTATCTTTGAACATCAAAAGAAAATGGAAGCACAAGTCTTTGGTCATAAAGTGTAGGA
GAAATAACGGGAGTTCTGATAAAAGTGAGACTCCACAAAGTGATGGGCCTTTAAGACGATCTGGTTTAGGAAGAACACGCCTCATTAGAGTTGTTCAGGAGGTTCAGAACAAAATAACAAAAAAATTCAAAGAGCTGCGAAAGAACTTTCCGATGAAAGTATTGTGTCTGCTTTTAGGATTTTACTGTGCAGGTCTTGTT
GCTACAAGTCTAGCTCAGACAGGGGATTGGGATATTTTGTCTGCAGGTCTGGCAGTAGTTATAATCGAAGCAATTGGTGCATTAATGTATCGGGCATATCCATTAATAGAAAGGTTACATTTTTTTGTCATAATGGTCAATTATTGGAAGGCAGGTCTTTCTTTAGGTCTATTTTTGGATGCATTCAAGTATGAAATGGA
TGTAAATTCAGTGCTATGTGATTTATTTTATCTTGAAATAAATCTATTTTCAGTGCTTTGGTGGTAGGGCTTTCATCTAGAGTTTCCATGGCCTTTCATTTGGACTTTTCGCCTTCTGGATGGAAGGAAAACAAGAAGTAAAAAGCAATCAGTAGAGATACAAGAGAAAGCACACCATAATTGTGTGTAAGTGAATGTTG
ACCGTTCTCTCCTGCACATGCTCTGGTTCGAGAGACATTTTTTTGTATTATATTTAGAACAGTTTGACATCCCTGTTGGAATTCTCCATATTACTGTCATTAAGTTTGAACCCAGTTAAATATATGAGCAGTAATCACAAACTGCATTTCAGCACTAGCTACCGATAATTAAGGGGAGGAGAAACATGGAAACCGTGGAA
CATGGCTTGCACTTGTATTATCCTTGTATAATTAAGGATTGGTAGACAGTTATCTAGCTCATATGTGAAATATTTGTTATGATTGATAAAAATGTGGTATGATTGATAAAAACGTGGTATGATTTTGCCTGTGCTATGTATTTGAG
>TRINITY_DN47942_c0_g1_i5 from sample A10 / Example unspliced isoform:CTCTCGTTGACACGTAACCTCCATCTCTACCACTAAACCGCCACCCACACCTAAAAGCTGTGTTTTGTCCTTTCAAAAGAGTTTTTTCCAGAGAATTGTCCTTTCAAAAGAGTTACTAGGAAGTAAAATCAGGCTACTTCGTTGGTTTCGCGGGTTCAGAACATGGTTTTCTTTGGTGAGGGTTTCAATGGCGTCTTAGG
GTTTGAAAATGAACTTCCCCTCTACCAAATTCCTAAACTCATGGAGGCCAAACCACAGAAAACAATACTATGGCAAATGCCGTGAGATTATTGAAGCCACTACTACAACAAAATTTTCCTTTCAACAACGAATAAACCCAGTTTCATTTTAGGTTTATACACTAAATTGCCATATATATGAAGTGCAATTTTGTAAATTT
GACGTGCAATCCCCGTTCTCGCTTCATTTCTGCGATTAGGATGCAACAGGGACTGATCGAATTTAATATATTTCAAGGAGTTGATAATTCTAGTGCTTGATGGAGCTAAGAGGGCGAGGAATTTGACAATCTCCTTCAAGGTTCGAATCGCAGGGAAGACACTGGTGTTCTTATCTCCTTGGTATGGCTTTGGAAGGGCT
CCACGTTCCATCTCTGTCAAATAGTCATTTAAGCGCAAAAGCATTAGCAACAGTTGCTGTTCCATGTAATGTTGGCAGGAGCTTGGCATTTGGTCAAGGGAGATTTCGGTGTATACGTTGCATCCATAACCGAGGTGCATCTGTATCTTTGAACATCAAAAGAAAATGgtgtgccttcaactctgttttttcttcagcct
tatccctgcttccttttctcagaagaggataacactacaaaatatcaaggaaatactgtggtcatctttgtattaggtcacgcttctgatggcccatctttgccaatacctaatttgagtttgccagtgatgcaaattactttgcatgttgctgcagGAAGCACAAGTCTTTGGTCATAAAGTGTAGGAGAAATAACGGG
AGTTCTGATAAAAGTGAGACTCCACAAAGTGATGGGCCTTTAAGACGATCTGGTTTAGGAAGAACACGCCTCATTAGAGTTGTTCAGGAGGTTCAGAACAAAATAACAAAAAAATTCAAAGAGCTGCGAAAGAACTTTCCGATGAAAGTATTGTGTCTGCTTTTAGGATTTTACTGTGCAGGTCTTGTTGCTACAAGTCT
AGCTCAGACAGGGGATTGGGATATTTTGTCTGCAGGTCTGGCAGTAGTTATAATCGAAGCAATTGGTGCATTAATGTATCGGGCATATCCATTAATAGAAAGGTTACATTTTTTTGTCATAATGGTCAATTATTGGAAGGCAGGTCTTTCTTTAGGTCTATTTTTGGATGCATTCAAGTATGAAATGGATGTAAATTCAG
TGCTATGTGATTTATTTTATCTTGAAATAAATCTATTTTCAGTGCTTTGGTGGTAGGGCTTTCATCTAGAGTTTCCATGGCCTTTCATTTGGACTTTTCGCCTTCTGGATGGAAGGAAAACAAGAAGTAAAAAGCAATCAGTAGAGATACAAGAGAAAGCACACCATAATTGTGTGTAAGTGAATGTTGACCGTTCTCTC
CTGCACATGCTCTGGTTCGAGAGACATTTTTTTGTATTATATTTAGAACAGTTTGACATCCCTGTTGGAATTCTCCATATTACTGTCATTAAGTTTGAACCCAGTTAAATATATGAGCAGTAATCACAAACTGCATTTCAGCACTAGCTACCGATAATTAAGGGGAGGAGAAACATGGAAACCGTGGAACATGGCTTGCA
CTTGTATTATCCTTGTATAATTAAGGATTGGTAGACAGTTATCTAGCTCATATGTGAAATATTTGTTATGATTGATAAAAATGTGGTATGATTGATAAAAACGTGGTATGATTTTGCCTGTGCTATGTATTTGAG
Intron 2 GTGTTCTTAT ... AATGTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.75 | 6.2 | 19.6 | 18.9 |
| A2 | 32.73 | 9 | 1.7 | 6.9 |
| A3 | 55.95 | 10.4 | 10.6 | 14.9 |
| A4 | 57.42 | 10.6 | 6 | 21.9 |
| A5 | 69.52 | 2.4 | 2.8 | 8 |
| A6 | 49.67 | 60.5 | 44.3 | 74.7 |
| A7 | 45.24 | 70.3 | 38.3 | 76.7 |
| A8 | 59.32 | 54.8 | 63 | 93.9 |
| A9 | 55.18 | 61.3 | 51.5 | 94.7 |
| A10 | 51.31 | 57 | 41.2 | 76.2 |
>TRINITY_DN120114_c0_g2_i5 from sample A1 / Example spliced isoformCGTCGTTTGATTAGAGTCTCAATGGTTTTAGGGTTTGAAAGGAACTCCACTGCTCAACTCAACTGTTCATGGAAGCCAAATCACACAGGCAAACGCCATGGCAAATATTGAACCAACTATAATAATTTTTTCTTCAAACAACGAACATGACAAACTCAATTTCGTATTAGGGTGTGCTTAATTTGACACGCAATGCTGGT
TCCCGCTTCCTTAACGTAACCAGGATGCGCTTAAAGCTACAGCTAAGATTATTGTTATTCTCGAATGGGTTTGCATTTGTTTCCTCTTTAGAATTGGATTAACTCAAACAGGAGGGCAATTTATTTTGTTAGTAATTCGAGTGTTTCATGCGGTTTAGAGGGCAGAGGATTTTCACAATTTCAACCGGGGTTCAAGTCGC
AGGGAAGGCACTGGAATTTGGCCTTCGCTCAAGTGAGATTTCAGTATATACGTTTCATCCATACTGGAGTTACATCTGTGTCCTTGAACATCAAAAGAAAATGGATGCATAATTCTTTGGTCATAAATTGTAGGGGAAATAATGGGCGTTCTGATAAAAATGAGAATCCTCAAAGTGGTGGGCCTTTTAAACGGTCTGGT
CTTGGAAGAACACGCCTCATTAGAGTCATTCAAGAGGTTCGGAGCAAAGCCACAAAAAAAATCGATGAGTTGAAAAAGAACTTTCCTATGAAAGTATTGTGCCTGCTGCTAGGCTTTTACTGTTCAACTATTGTTGCTACAAGTATAGGTCAGACTGGGGATTGGGATATTTTGTCCGCAGGTCTGGCAGTTGCTATAGT
AGAAGCAATTGGTGCATTAATGTATCGGGCATATCCCTTAATAGAAAGGCTACATTCTTTTGTGATAATGTTCAATTATTGGAAGGCAGGACTATCTTTAGGTCTATTTTTGGATGCATTCAAGTATGAAATGGATATAAATTCAATGTTATGTGATTCATTTAATCTTGAAATAAATCTATTTTCGATGCTTTTGTGGT
AAGGTTTTCAACTAAAGTTTTCATGAGCTTCTGCTCAGGCTTTTGCATTTTTTGGCTGGAAGGAAAACAAGTAAGAATGGAAAACAAATATTATAGAGGTGAGAGCAACTGCAACATAACTGCTTCAAGTTTTTGTCAATATTTTTTGGTTGAAAATGTTTTGACAATATTTTATGCACAATGCTCACTTGGAGAGACAT
TTCTTTCTGTATTATATTTGAAGACAGTCAGACATTTATGTTGGGTTTGTCTGTAACTCCGTCATTATAGTTTTAACTTAGTTAGGCATATGGAGGTAAATATATGGGCAACCAAATCGTAGCAGTAATCACAAGCTGCATGTCAGTAGTAGCTGCTAATAATCAATGGG
>TRINITY_DN120114_c0_g2_i3 from sample A1 / Example unspliced isoform:CGTCGTTTGATTAGAGTCTCAATGGTTTTAGGGTTTGAAAGGAACTCCACTGCTCAACTCAACTGTTCATGGAAGCCAAAGCAAACAGGCAAACGCCATGGCAAATATTGAACCAACTATAATAAATTTTTCTTCCAACAACGAACACGACAAACTCAATTTCGTATTAGGGTGTGCTTAATTTGACACGCAATGCTGGT
TCCCGCTTCCTTACCGTAACCAGGATGCGCTTAAAGCTACAGAGGGCAGAGGATTTTCACAATTTCAACCGGGGTTCAAGTCGCAGGGAAGGCACTGgtgttcttatctcctttgtatggctttacaagggatgcacgttccatttctatcaaatagacatctaaagctaagttcaaaagcattagcaacaattgatttt
gctgcaccatataaatgtgacagGAATTTGGCCTTCGCTCAAGTGAGATTTCAGTATATACGTTTCATCCATACTGGAGTTACATCTGTGTCCTTGAACATCAAAAGAAAATGGATGCATAATTCTTTGGTCATAAATTGTAGGGGAAATAATGGGCGTTCTGATAAAAATGAGAATCCTCAAAGTGGTGGGCCTTTTAA
ACGGTCTGGTCTTGGAAGAACACGCCTCATTAGAGTCATTCAAGAGGTTCGGAGCAAAGCCACAAAAAAAATCGATGAGTTGAAAAAGAACTTTCCTATGAAAGTATTGTGCCTGCTGCTAGGCTTTTACTGTTCAACTATTGTTGCTACAAGTATAGGTCAGACTGGGGATTGGGATATTTTGTCCGCAGGTCTGGCAG
TTGCTATAGTAGAAGCAATTGGTGCATTAATGTATCGGGCATATCCCTTAATAGAAAGGCTACATTCTTTTGTGATAATGTTCAATTATTGGAAGGCAGGACTATCTTTAGGTCTATTTTTGGATGCATTCAAGTATGAAATGGATATAAATTCAATGTTATGTGATTCATTTAATCTTGAAATAAATCTATTTTCGATG
CTTTTGTGGTAAGGTTTTCAACTAAAGTTTTCATGAGCTTCTGCTCAGGCTTTTGCATTTTTTGGCTGGAAGGAAAACAAGTAAGAATGGAAAACAAATATTATAGAGGTGAGAGCAACTGCAACATAACTGCTTCAAGTTTTTGTCAATATTTTTTGGTTGAAAATGTTTTGACAATATTTTATGCACAATGCTCACTT
GGAGAGACATTTCTTTCTGTATTATATTTGAAGACAGTCAGACATTTATGTTGGGTTTGTCTGTAACTCCGTCATTATAGTTTTAACTTAGTTAGGCATATGGAGGTAAATATATGGGCAACCAAATCGTAGCAGTAATCACAAGCTGCATGTCAGTAGTAGCTGCTAATAATCAATGGG
Intron 3 GTGTGCCTTT ... GTTGCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.74 | 25 | 0 | 5 |
| A2 | 30.39 | 27.5 | 0 | 12 |
| A3 | 31.3 | 39.5 | 2 | 18 |
| A4 | 24.04 | 19 | 0 | 6 |
| A5 | 35.25 | 9.3 | 1 | 5 |
| A6 | 22.88 | 128.1 | 0.6 | 38 |
| A7 | 26.15 | 147 | 0 | 52 |
| A8 | 26.02 | 142.3 | 1 | 50 |
| A9 | 26.34 | 142.6 | 1 | 51 |
| A10 | 24.66 | 113 | 0 | 37 |
>TRINITY_DN47326_c0_g1_i7 from sample A7 / Example spliced isoformAAAGAAATACTTATCCCATTTAGCATGTGGAATCCCCACTAACTTGGTGGTGCGGTTCCTACCGTCGTTTGATTAGAGTCTCAATGGTTTTAGGGTTTGAAAGGAACTCCACTGCTCAACTCAACTGTTCATGGAAGCCAAATCACACAGGCAAACGCCATGGCAAATATTGAACCAACTATAATAATTTTTTCTTCAAA
CAACGAACATGACAAACTCAATTTCGTATTAGGGTGTGCTTAATTTGACACGCAATGCTGGTTCCCGCTTCCTTAACGTAACCAGGATGCGCTTAAAGCTACAGCTAAGATTATTGTTATTCTCAAATGGGTTTGCATTTGTTTCCTCTTTAGAATTGGATTAACTCAAACAGGAGGGCAATTTATTTTGTTAGTAATTC
GAGTGTTTCATGCGGTTTAGAGGGCAGAGGATTTTCACAATTTCAACCGGGGTTCAAGTCGCAGGGAAGGCACTGGAATTTGGCCTTCGCTCAAGTGAGATTTCAGTATATACGTTTCATCCATACTGGAGTTACATCTGTGTCCTTGAACATCAAAAGAAAATGGATGCATAATTCTTTGGTCATAAATTGTAGGGGAA
ATAATGGGCGTTCTGATAAAAATGAGAATCCTCAAAGTGGTGGGCCTTTTAAACGGTCTGGTCTTGGAAGAACACGCCTCATTAGAGTCATTCAAGAGGTTCGGAGCAAAGCCACAAAAAAAATCGATGAGTTGAAAAAGAACTTTCCTATGAAAGTATTGTGCCTGCTGCTAGGCTTTTACTGTTCAACTATTGTTGCT
ACAAGTATAGGTCAGACTGGGGATTGGGATATTTTGTCCGCAGGTCTGGCAGTTGTTATAGTAGAAGCAATTGGTGCATTAATGTATCGGGCATATCCATTAATAGAAAGGCTACATTCTTTTGTGATAATGTTCAATTATTGGAAGGCAGGACTATCTTTAGGTCTATTTTTGGATGCATTCAAGTATGAAATGGATAT
AAATTCAATGTTATGTGATTCATTTAATCTTGAAATAAATCTATTTTCGATGCTTTTGTGGTAAGGTTTTCAACTAAAGTTTTCATGAGCTTCTGCTCAGGCTTTTGCATTTTTTGGCTGGAAGGAAAACAAGTAAGAATGGAAAACAAATATTATAGAGGTGAGAGCAACTGCAACATAACTGCTTCAAGTTTTTGTCA
ATATTTTTTGGTTGAAAATGTTTTGACAATATTTTATGCACAATGCTCACTTGGAGAGACATTTCTTTCTGTATTATATTTGAAGACAGTCGGACATTTATGTTGGGTTTGTCTGTAACTCCGTCGTTATAGTTTGAACTTAGTTAGACATATGGAGGTAAATATACGGGCAACCAAATCGTAGCAGTAATCACAAGCTG
CATGTCAGTAGTAGCTGCTGATAATCAATGGGAGGAGAAACATGGAAGTTGGGAACATGGTTTGCACTTGCAGTATCATTGTATGATTAAAGATGGTTATCCTAGTATCCAGTTATCTTAACTTGTGAAATATCTGAAATGATCTCTAAAAAATGTGTTGTGTTTTTGCTTGCAATAATTTGTATCCGAGCTCTCTAATT
CTATTTTACCAATCTCCC
>TRINITY_DN47326_c0_g1_i3 from sample A7 / Example unspliced isoform:CTTTGAACATCAAAAGAAAATGgtgtgcctttagctctgttgtttctttttaacattatccttgcttcctttttcagaagaagaaaagagaaagaaaaaaagtcagatacatacacaaattgcaacacaaagtgctcacattggctcatgcttataatggatcatgtttgcctgtacatgatattattttgcaatgttac
aaattactttgaatgttgctgcagGATGCATAATTCTTTGGTCATAAATTGTAGGGGAAATAATGGGCGTTCTGATAAAAATGAGAATCCTCAAAGTGGTGGGCCTTTTAAACGGTCTGGTCTTGGAAGAACACGCCTCATTAGAGTCATTCAAGAGGTTCGGAGCAAAGCCACAAAAAAAATCGATGAGTTGAAAAAGA
ACTTTCCTATGAAAGTATTGTGCCTGCTGCTAGGCTTTTACTGTTCAACTATTGTTGCTACAAGTATAGGTCAGACTGGGGATTGGGATATTTTGT
Intron 4 GTGTGCCTTT ... TAAATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.15 | 14 | 0 | 13 |
| A2 | 75 | 6 | 0 | 18 |
| A3 | 69.05 | 13 | 2 | 29 |
| A4 | 52.17 | 11 | 0 | 12 |
| A5 | 50 | 10 | 1 | 10 |
| A6 | 55.56 | 76 | 0 | 95 |
| A7 | 58.76 | 73 | 0 | 104 |
| A8 | 54.9 | 92 | 1 | 112 |
| A9 | 55.95 | 74 | 1 | 94 |
| A10 | 50.38 | 66 | 0 | 67 |
>TRINITY_DN43593_c0_g1_i8 from sample A9 / Example spliced isoformGAAATACTTATCCCATTTATCATGTGGAATCCCCACTAGCTTGGTGGTGCGCTTCCTACCGTCGTTTGATTAGAGTCTCAATGGTTTTAGGGTTTGAAAGGAACTCCACTGCTCAACTCAACTGTTCATGGAAGCCAAAGCAAACAGGCAAACGCCATGGCAAATATTGAACCAACTATAATAAATTTTTCTTCCAACAA
CGAACACGACAAACTCAATTTCGTATTAGGGTGTGCTTAATTTGACACGCAATGCTGGTTCCCGCTTCCTTACCGTAACCAGGATGCGCTTAAAGCTACAGGTGTTCTTATCTCCTTTGTATGGCTTTAAAAGGGATGCACGTTCCATTTCTATCAAATAGACATCTAAAGCTAAGTTCAAAAGCATTAGCAACAATTGA
TTTTGCTGCACCATATAAATGTGACAGGAATTTGGCCTTCGCTCAAGTGAGATTTCAGTATATACGTTTCATCCATACTGGAGTTACATCTGTGTCCTTGAACATCAAAAGAAAATGGGGAAATAATGGGCGTTCTGATAAAAATGAGAATCCTCAAAGTGGTGGGCCTTTTAAACGGTCTGGTCTTGGAAGAACACGCC
TCATTAGAGTCATTCAAGAGGTTCGGAGCAAAGCCACAAAAAAAATCGATGAGTTGAAAAAGAACTT
>TRINITY_DN43593_c0_g1_i9 from sample A9 / Example unspliced isoform:ATCAAAAGAAAATGgtgtgcctttagctctgttgtttctttttaacattatccttgcttcctttttcagaagaagaaaagagaaagaaaaaaagtcagatacatacacaaattgcaacacaaagtgctcacattggctcatgcttataatggatcatgtttgcctgtacatgatattattttgcaatgttacaaattact
ttgaatgttgctgcaggatgcataattctttggtcataaattgtagGGGAAATAATGGGCGTTCTGATAAAAATGAGAATCCTCAAAGTGGTGGGCCTTTTAAACGGTCTGGTCTTGGAAGAACACGCCTCATTAGAGTCATTCAAGAGGTTCGGAGCAAAGCCACAAAAAAAATCGATGAGTTGAAAAAGAACTTTCCT
ATGAAAGTATTGTGCCTGCTGCTAGGCTTTTACTGTTCAACTATTGTTGCTACAAGTATAGGTCAGACTGGGGATTGGGATATTTTGTCCGCAGGTCTGGCAGTTGTTATAGTAGAAGCAATTGGTGCATTAATGTATCGGGCATATCCATTAATAGAAAGGCTACATTCTTTTGTGATAATGTTCAATTATTGGAAGGC
AGGACTATCTTTAGGTCTATTTTTGGATGCATTCAAGTATGAAATGGATATAAATTCAATGTTATGTGATTCATTTAATCTTGAAATAAATCTATTTTCGATGCTTTTGTGGTAAGGATTTCAACTGAAGTTTTCATGAGCTTCTGCTCAGGCTTTGCATTTTTTGGCTGGAAGGAAAACAAGTAAGAATGGAAAACAAA
TATTATAGAGGTGAGAGCAACTGCAACATAACTGCTTCAAGTTTTTGTCAATATTTTTTGGTTGAAAATGTTTTGACAATATTTTATGCACAATGCTCACTTGGAGAGACATTTCTTTCTGTATTATATTTGAAGACAGTCGGACATTTATGTTGGGTTTGTCTGTAACTCCGTCGTTATAGTTTGAACTTAGTTAGACA
TATGGAGGTAAATATACGGGCAACCAAATCGTAGCAGTAATCACAAGCTGCATGTCAGTAGTAGCTGCTGATAATCAATGGGAGGAGAAACATGGAAGTTGGGAACATGGTTTGCACTTGCAGTATCATTGTATGATTAAAGATGGTTATCCTAGTATCCAGTTATCTTAACTTGTGAAATATCTGAAATGATCTCTAAA
AAATGTGTTGTGTTTTTGCTTGCAATAATTTGTATCCGAGCTCTCTAATTCTATTTTACCAATCTCCC
Intron 5 GTTTATACAC ... ATATTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.33 | 9 | 26 | 16.7 |
| A2 | 74.74 | 9 | 29 | 24.3 |
| A3 | 73.33 | 6 | 21 | 12 |
| A4 | 79.79 | 4 | 17 | 14.7 |
| A5 | 56.25 | 7 | 11 | 7 |
| A6 | 72.13 | 22 | 60 | 54 |
| A7 | 74.14 | 24 | 81 | 57 |
| A8 | 77.82 | 11 | 45 | 32.3 |
| A9 | 73.9 | 22 | 76 | 49 |
| A10 | 74.59 | 25 | 103 | 44 |
>TRINITY_DN47942_c0_g1_i17 from sample A10 / Example spliced isoformCTCTCGTTGACACGTAACCTCCATCTCTACCACTAAACCGCCACCCACACCTAAAAGCTGTGTTTTGTCCTTTCAAAAGAGTTTTTTCCAGAGAATTGTCCTTTCAAAAGAGTTACTAGGAAGTAAAATCAGGCTACTTCGTTGGTTTCGCGGGTTCAGAACATGGTTTTCTTTGGTGAGGGTTTCAATGGCGTCTTAGG
GTTTGAAAATGAACTTCCCCTCTACCAAATTCCTAAACTCATGGAGGCCAAACCACAGAAAACAATACTATGGCAAATGCCGTGAGATTATTGAAGCCACTACTACAACAAAATTTTCCTTTCAACAACGAATAAACCCAGTTTCATTTTAGGAGTTGATAATTCTAGTGCTTGATGGAGCTAAGAGGGCGAGGAATTTG
ACAATCTCCTTCAAGGTTCGAATCGCAGGGAAGACACTG
>TRINITY_DN47942_c0_g1_i15 from sample A10 / Example unspliced isoform:CTCTCGTTGACACGTAACCTCCATCTCTACCACTAAACCGCCACCCACACCTAAAAGCTGTGTTTTGTCCTTTCAAAAGAGTTTTTTCCAGAGAATTGTCCTTTCAAAAGAGTTACTAGGAAGTAAAATCAGGCTACTTCGTTGGTTTCGCGGGTTCAGAACATGGTTTTCTTTGGTGAGGGTTTCAATGGCGTCTTAGG
GTTTGAAAATGAACTTCCCCTCTACCAAATTCCTAAACTCATGGAGGCCAAACCACAGAAAACAATACTATGGCAAATGCCGTGAGATTATTGAAGCCACTACTACAACAAAATTTTCCTTTCAACAACGAATAAACCCAGTTTCATTTTAGgtttatacactaaattgccatatatatgaagtgcaattttgtaaattt
gacgtgcaatccccgttctcgcttcatttctgcgattaggatgcaacagggactgatcgaatttaatatatttcaagGAGTTGATAATTCTAGTGCTTGATGGAGCTAAGAGGGCGAGGAATTTGACAATCTCCTTCAAGGTTCGAATCGCAGGGAAGACACTGGTGTTCTTATCTCCTTGGTATGGCTTTGGAAGGGCT
CCACGTTCCATCTCTGTCAAATAGTCATTTAAGCGCAAAAGCATTAGCAACAGTTGCTGTTCCATGTAATGTTGGCAGGAGCTTGGCATTTGGTCAAGGGAGATTTCGGTGTATACGTTGCATCCATAACCGAGGTGCATCTGTATCTTTGAACATCAAAAGAAAATGGAAGCACAAGTCTTTGGTCATAAAGTGTAGGA
GAAATAACGGGAGTTCTGATAAAAGTGAGACTCCACAAAGTGATGGGCCTTTAAGACGATCTGGTTTAGGAAGAACACGCCTCATTAGAGTTGTTCAGGAGGTTCAGAACAAAATAACAAAAAAATTCAAAGAGCTGCGAAAGAACTTTCCGATGAAAGTATTGTGTCTGCTTTTAGGATTTTACTGTGCAGGTCTTGTT
GCTACAAGTCTAGCTCAGACAGGGGATTGGGATATTTTGTCTGCAGGTCTGGCAGTAGTTATAATCGAAGCAATTGGTGCATTAATGTATCGGGCATATCCATTAATAGAAAGGTTACATTTTTTTGTCATAATGGTCAATTATTGGAAGGCAGGTCTTTCTTTAGGTCTATTTTTGGATGCATTCAAGTATGAAATGGA
TGTAAATTCAGTGCTATGTGATTTATTTTATCTTGAAATAAATCTATTTTCAGTGCTTTGGTGGTAGGGCTTTCATCTAGAGTTTCCATGGCCTTTCATTTGGACTTTTCGCCTTCTGGATGGAAGGAAAACAAGAAGTAAAAAGCAATCAGTAGAGATACAAGAGAAAGCACACCATAATTGTGTGTAAGTGAATGTTG
ACCGTTCTCTCCTGCACATGCTCTGGTTCGAGAGACATTTTTTTGTATTATATTTAGAACAGTTTGACATCCCTGTTGGAATTCTCCATATTACTGTCATTAAGTTTGAACCCAGTTAAATATATGAGCAGTAATCACAAACTGCATTTCAGCACTAGCTACCGATAATTAAGGGGAGGAGAAACATGGAAACCGTGGAA
CATGGCTTGCACTTGTATTATCCTTGTATAATTAAGGATTGGTAGACAGTTATCTAGCTCATATGTGAAATATTTGTTATGATTGATAAAAATGTGGTATGATTGATAAAAACGTGGTATGATTTTGCCTGTGCTATGTATTTGAG