sp|F4K2F0|EML3_ARATH ----> Protein EMSY-LIKE 3


Intron 1 GTCAAAGAAT ... ATGATTAAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A118.923007
A2251826
A316.672004
A49.091001
A512.51402
A622.99144043
A79.6179019
A815.58130124
A916.22124324
A1014.29114019



>TRINITY_DN45938_c0_g2_i5 from sample A7 / Example spliced isoform
CGCCCATAGGACCTACCTACCTCCATTCTATACCATTTCTTCCCGCTCTTCATGTGACCGCGGTATGAACGGTTTGTCACCCTACTTCAGCGCCGCCTTTTCTGCAACGCCGGACAGAGGGAGGTCCCGCTTTCGAATCCTGCTAAAATATTCGACTCGGTCGCTGTAGGCACATCGCTGGTATTGCAGCAATGAAAGGA
AGCTTCTCGTCTGTTCCATTATCGTGGATTTCACGACTTCAAATGCCTCCGAGTGAATGAAGTAAGCGAAGTTTGTCAATTAATTAAGCCCACGAGCAATGGACCACGGCCCCTCCGATAGCAGTGGAACAGATGATGATATACCCCCACCTCATGTGAATCGAGAACCAAGAGGAGGGGGTCAAGTTGGTCGAAATAGG
AGAGCTTCTGTTGGAGCACTTTTGTATGAGAGAGCCGAGTTTGATATGGAGTCTCAGATTCACCGGTTGGAACAAGAGGCATACAGTGCTGTTCTGCGGGCTTTCATTGGACAATCTGATACATTTTCTTGGGATAAAGAGGTGCTGATTACTGATTTGAGGAAAGAACTTAGAGTTTCAGATATGGACCATAGAGAACT
CCTTGGGAAAGTTAATGCAGATGATGTACTGAGACATATAAGAGAATACCGACAAGGCAGTTCTACTAGACATATTTTTACATCAAATGCTGTACATACTTCTTTCCAGACACGTGCTCCTACAGTTTCAGCATCTTGTAAGAGGCAAAAAACTACACCTGTGACGACCTCTTTGCCTCTACATGTTCTACCACGCACTG
TACATACTCTGTTAGAAGCAGCAGGAAAAGGACTGCCTGGGGGAGTCAGGGGAAGGAAATCGAAAGCGGTGGAAAGGGTCTTTCGAGGGGATCATGTTGATCCTACCAATGTAGAGAAAGCTAAGGCAGCACTAAAAGAGCACGAGCAGTCTCTTTTTGAGGCAATTGCAAGACTTGGTGATGCATCTGATGAAGTGGGT
CTGTGCAGAAGATGGTCGAATGCCTCATTCTTCCCATATATACATCAGCCAAGAAAGAGTGTGGGGAAATAGGCAAGCAAAAGGAAGTCAAAATCTGGGTTATAAAGAAGGTGTAGCTCAAGTTGGTAGAAGGGAAGGTTCAGACAGGGAACCTATGCTTGGGGAAGGCACTATTGCCTTTGATGGTCAGCAAGATAATG
ATGATGAGGTTCCTATGGCCAGTGTTGTGGAAAGTGACCGGCTAAGTTAATGCAGTTGTTGAATCTTTGGGTTGATCTTGTCCTAATGAGACCATTATTGGTTGCTTGGGTCGACAATACAAATACAACACCTATATTGTAATTAATTTTTGGCCCATGGGATAATTACATTGCTATCAAGTTCCATGTCTTTGGTGGAA
AATGAGCGTCATACACTCTTTATTTTCAGTAGACATCAATTGATGCAACTTTCACGACACATTTAAAACATATTTTATAGTAGACATCAATTGATAGGAGTTCCACGACATATTCAAAACATGAAAGTATTCTGATGGAGTGATGGTAAATATGCATAAGCATACATAAAATAATGATGGTTTAATAAGCTCCATCCAGA
GATAGAATTATGATTATACTTAGACTCGGGGATATTTGCATTCCTGAATATTCTTGGATTCCTGGACATTTGCATTTCTGTCAGTGTTGTAGCTTTCAAACCTGTTCAAAAACAGGCTACGACAGTTTGAAAAGTTAGGCTTGTATCTTTTGAAGTGCTTTTCTAATATATTAACAGTAATGGTACAACATACCCCAAAG
GAAGAACAGATTGCAAGATTGGTTTGGGTTAGAATCCAAATAATTGTTGACAATGTTCATTGTTTATACCAAATGAAGAAGTCTACTTGGCC


>TRINITY_DN45938_c0_g2_i4 from sample A7 / Example unspliced isoform:
ACTTGGTGATGCATCTGATGAAGgtcaaagaatgctttcttggtcatgcaagtcatacgttgatgttatcaagtttaatatttagaattaatatgattaaagTGGGTCTGTGCAGAAGATGGTCGAATGCCTCATTCTTCCCATATATACATCAGCCAAGAAAGAGTGTGGGGAAATAGGCAAGCAAAAGGAAGTCAAAA
TCTGGGTTATAAAGAAGGTGTAGCTCAAGTTGGTAGAAGGGAAGGTTCAGACAGGGAACCTATGCTTGGGGAAGGCACTATTGCCTTTGATGGTCAGCAAGATAATGATGATGAGGTTCCTATGGCCAGTGTTGTGGAAAGTGACCGGCTAAGTTAATGCAGTTGTTGAATCTTTGGGTTGATCTTGTCCTAATGAGACC
ATTATTGGTTGCTTGGGTCGACAATACAAATACAACACCTATATTGTAATTAATTTTTGGCCCATGGGATAATTACATTGCTATCAAGTTCCATGTCTTTGGTGGAAAATGAGCGTCATACACTCTTTATTTTCAGTAGACATCAATTGATGCAACTTTCACGACACATTTAAAACATATTTTATAGTAGACATCAATTG
ATAGGAGTTCCACGACATATTCAAAACATGAAAGTATTCTGATGGAGTGATGGTAAATATGCATAAGCATACATAAAATAATGATGGTTTAATAAGCTCCATCCAGAGATAGAATTATGATTATACTTAGACTCGGGGATATTTGCATTCCTGAATATTCTTGGATTCCTGGACATTTGCATTTCTGTCAGTGTTGTAGC
TTTCAAACCTGTTCAAAAACAGGCTACGACAGTTTGAAAAGTTAGGCTTGTATCTTTTGAAGTGCTTTTCTAATATATTAACAGTAATGGTACAACATACCCCAAAGGAAGAACAGATTGCAAGATTGGTTTGGGTTAGAATCCAAATAATTGTTGACAATGTTCATTGTTTATACCAAATGAAGAAGTCTACTTGGCC



Intron 2 GTCAAAGAAT ... GTCTGTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A123.26332.310
A230217.49
A321.43224.66
A428.57150.86
A516.67152.33
A628.3316723.766
A714.61934033
A824.18156.825.350
A927.0615929.459
A1022.5413429.639



>TRINITY_DN108407_c1_g1_i20 from sample A2 / Example spliced isoform
CGCCCATAGGACCTACCTACCTCCATTCTATACCATTTCTTCCCGCTCTTCATGTGACCGCGGTATGAACGGTTTGTCACCCTACTTCAGCGCCGCCTTTTCTGCAACGCCGGACAGAGGGAGGTCCCGCTTTCGAATCCTGCTAAAATATTCGACTCGGTCGCTGTAGGCACATCGCTGGTATTGCAGCAATGAAAGGA
AGCTTCTCGTCTGTTCCATTATCGTGGATTTCACGACTTCAAATGCCTCCGAGTGAATGAAGTAAGCGAAGTTTGTCAATTAATTAAGCCCACGAGCAATGGACCACGGCCCCTCCGATAGCAGTGGAACAGATGATGATATACCCCCACCTCATGTGAATCGAGAACCAAGAGGAGGGGGTCAAGTTGGTCGAAATAGG
AGAGCTTCTGTTGGAGCACTTTTGTATGAGAGAGCCGAGTTTGATATGGAGTCTCAGATTCACCGGTTGGAACAAGAGGCATACAGTGCTGTTCTGCGGGCTTTCATTGGACAATCTGATACATTTTCTTGGGATAAAGAGGTGCTGATTACTGATTTGAGGAAAGAACTTAGAGTTTCAGATATGGACCATAGAGAACT
CCTTGGGAAAGTTAATGCAGATGATGTACTGAGACATATAAGAGAATACCGACAAGGCAGTTCTACTAGACATATTTTTACATCAAATGCTGTACATACTTCTTTCCAGACACGTGCTCCTACAGTTTCAGCATCTTGTAAGAGGCAAAAAACTACACCTGTGACGACCTCTTTGCCTCTACATGTTCTACCACGCACTG
TACATACTCTGTTAGAAGCAGCAGGAAAAGGACTGCCTGGGGGAGTCAGGGGAAGGAAATCGAAAGCGGTGGAAAGGGTCTTTCGAGGGGATCATGTTGATCCTACCAATGTAGAGAAAGCTAAGGCAGCACTAAAAGAGCATGAGCAGTCTCTTTTTGAGGCAATTGCAAGACTTGGTGATGCATCTGATGAAGAAGAT
GGTCGAATGCCTCATTCTTCCCATATATACATCAGCCAAGAAAGAGTGTGGGGAAATAGGCAAGCAAAAGGAAGTCAAAATCTGGGTTATAAAGAAGGTGTAGCTCAAGTTGGTAGAAGGGAAGGTTCAGACAGGGAACCTATGCTTGGGGAAGGCACTATTGCCTTTGATGGTCAGCAAGATAATGATGATGAGGGTTA
GTATACAACTTTAAGATATTTGTTTTTTACAGGTTAGTTCTTCAAGATTTAATTTAGTTTTGGATCAATTCAAAGAAAGTTGAAATCTATCTGCTGGGATGGTTTTGTTGAGCTATTCCTTGAGATTTCAGCCAATAGATTATCCTTTCTTTTGACCACCTGATCTGTGCAAGCATTGCTAGGGATTTGTTTATCCTGCT
CACCCA


>TRINITY_DN108407_c1_g1_i10 from sample A2 / Example unspliced isoform:
CGCCCATAGGACCTACCTACCTCCATTCTATACCATTTCTTCCCGCTCTTCATGTGACCGCGGTATGAACGGTTTGTCACCCTACTTCAGCGCCGCCTTTTCTGCAACGCCGGACAGAGGGAGGTCCCGCTTTCGAATCCTGCTAAAATATTCGACTCGGTCGCTGTAGGCACATCGCTGGTATTGCAGCAATGAAAGGA
AGCTTCTCGTCTGTTCCATTATCGTGGATTTCACGACTTCAAATGCCTCCGAGTGAATGAAGTAAGCGAAGTTTGTCAATTAATTAAGCCCACGAGCAATGGACCACGGCCCCTCCGATAGCAGTGGAACAGATGATGATATACCCCCACCTCATGTGAATCGAGAACCAAGAGGAGGGGGTCAAGTTGGTCGAAATAGG
AGAGCTTCTGTTGGAGCACTTTTGTATGAGAGAGCCGAGTTTGATATGGAGTCTCAGATTCACCGGTTGGAACAAGAGGCATACAGTGCTGTTCTGCGGGCTTTCATTGGACAATCTGATACATTTTCTTGGGATAAAGAGGTGCTGATTACTGATTTGAGGAAAGAACTTAGAGTTTCAGATATGGACCATAGAGAACT
CCTTGGGAAAGTTAATGCAGATGATGTACTGAGACATATAAGAGAATACCGACAAGGCAGTTCTACTAGACATATTTTTACATCAAATGCTGTACATACTTCTTTCCAGACACGTGCTCCTACAGTTTCAGCATCTTGTAAGAGGCAAAAAAACTACACCTGTGACGACCTCTTTGCCTCTACATGTTCTACCACGCACT
GTACATACTCTGTTAGAAGCAGCAGGAAAAGGACTGCCTGGGGGAGTCAGGGGAAGGAAATCGAAAGCGATATCTTCAGGGGATATTCGATGTGAGGATTATGGGCCTTTACAGATTGGTCAAGGAGACGCTAGGCGAGGTGAAAAAAAATTAGTTGATCATATTGATCCTGTCTTACCATCAAGTAGAGGGAAAGCACT
TCCAAAGGGCCAGAGTACAAGGGGCTACGCATCTTCTAAAAGTGGTACACTCAACAGGGAACCTGTTACTATTGAGTTACGGGAGACTGATAAGCTTATCAAGGAGGTGGAAAGGGTCTTTCGAGGGGATCATGTTGATCCTACCAATGTAGAGAAAGCTAAGGCAGCACTAAAAGAGCATGAGCAGTCTCTTTTTGAGG
CAATTGCAAGACTTGGTGATGCATCTGATGAAGgtcaaagaatgctttcttggtcatgcaagtcatacgttgatgttatcaagtttaatatttagaattaatatgattaaagtgggtctgtgcagAAGATGGTCGAATGCCTCATTCTTCCCATATATACATCAGCCAAGAAAGAGTGTGGGGAAATAGGCAAGCAAAAG
GAAGTCAAAATCTGGGTTATAAAGAAGGTGTAGCTCAAGTTGGTAGAAGGGAAGGTTCAGACAGGGAACCTATGCTTGGGGAAGGCACTATTGCCTTTGATGGTCAGCAAGATAATGATGATGAGGTTCCTATGGCCAGTGTTGTGGAAAGTGACCGGCTAAGTTAATGCAGTTGTTGAATCTTTGGGTTGATCTTGTCC
TAATGAGACCATTATTGGTTGCTTGGGTCGACAATACAAATACAACACCTATATTGTAATTAATTTTTGGCCCATGGGATAATTACATTGCTATCAAGTTCCATGTCTTTGGTGGAAAATGAGCGTCATACACTCTTTATTTTCAGTAGACATCAATTGATGCAACTTTCACGACACATTTAAAACATATTTTATAGTAG
ACATCAATTGATAGGAGTTCCACGACATATTCAAAACATGAAAGTATTCTGATGGAGTGATGGTAAATATGCATAAGCATACATAAAATAATGATGGTTTAATAAGCTCCATCCAGAGATAGAATTATGATTATACTTAGACTCGGGGATATTTGCATTCCTGAATATTCTTGGATTCCTGGACATTTGCATTTCTGTCA
GTGTTGTAGCTTTCAAACCTGTTCAAAAACAGGCTACGACAGTTTGAAAAGTTAGGCTTGTATCTTTTGAAGTGCTTTTCTAATATATTAACAG