sp|Q8L4P8|CKB11_ORYSJ ----> Cyclin-dependent kinase B1-1
Intron 1 GTATGCTTCC ... TGATTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.74 | 157.5 | 18.8 | 43.2 |
| A2 | 16.98 | 122.1 | 7.6 | 24.3 |
| A3 | 14.25 | 151.3 | 9.5 | 24.3 |
| A4 | 17.38 | 110.2 | 8.7 | 22.5 |
| A5 | 19 | 56.5 | 4.5 | 13.3 |
| A6 | 18.24 | 1172.7 | 44.9 | 264 |
| A7 | 20.55 | 956.2 | 53.9 | 249.7 |
| A8 | 20.47 | 1121 | 81.9 | 291 |
| A9 | 18.59 | 1058.4 | 44.6 | 244 |
| A10 | 20.6 | 649.1 | 45.5 | 169.2 |
>TRINITY_DN108001_c0_g1_i4 from sample A3 / Example spliced isoformAGTTTCATGTATCAACTGTGCAAAGGAGTAATCCATTTCCACAGCCATGGAGTGATGCATAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGGTTTATCTGTAAAATCTTTGTTATCT
AACGAAACAGGCCTCATTTGATTTATCATTCCTTAATGTTCTGACGTATTGTTAACTACGATTGCAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGAGT
CGGAAATAGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGAGG
ATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTTGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATGTT
CTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCT
>TRINITY_DN108001_c0_g1_i1 from sample A3 / Example unspliced isoform:ACCTGAGCTTCTGTTGGAACAACGATCAAATCTCACGGCTGACTCCTGCCCTCAACCCGAAAGGGTTATTTAGACTTATAATAAAAAGGAAAGGCAAACCAAGTGGGTTTATTCAAATTTGTTCACATTTGAATGAGATTCAGTTAATCGGCCTTTCTCAGTGCGTGGGTGCGGCTGAGAATACATATCTATTAATCTCA
TCTCTGTAACTGTAATTGATTGGAGCAGTCCAGCATGGATCAATATGAAAAGATTGAAAAAATTGGGCAGGGTGCGTATGGGAAGGTGTACAAGGCCATGGACAAGACCACCGGCCATATTGTTGCTCTCAAGAAGTGCCGCGTTAATTTGCATGAGCAAGGTATTCCTTCTTCCTCGCTTCGCGAAATCTCGCTTCTCA
GGTTGCTCTGCAACGGTTCATATGTTGCTCGGTTGCTTTCTGTGGAGCATGTGGTCAAGAAACAAAAACGATATATTTTCCTGGTATTTGAGTATTTCGACGCAGATTTGAGGAAATTCATAGACTCTTACCGAGACAGCGTCAATCCTGTGACTCTACCACCAAAAATGATTCAGAGTTTCATGTATCAACTGTGCAAA
GGAGTAATCCATTTCCACAGCCATGGAGTGATGCATAGATAAACATAGGTACATGCTTTCTCCAGTATCAGTATTCAATTGGATTTGATTTATTCAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTAC
ACTCATGAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGGTGAGTGGCATTAGTAATAAAATGTATGAAAAAGTTTTTATAATCTTAAAGTTATTTCTGATAATCTTGAACCCTTTTACTTCTTGTCTTCATTATT
TAGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGAGTCGGAAATAGGCACACTATTACGTATTTTCAGgtatgcttccaatgtgaatgctaaaacttgtctaagcaataactcatttaaacacacagcaaattaaactgatttgcttttctgattgaaagGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAG
AAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGAGGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTTGACAAGTCTCAATATTGAGTT
TTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTT
TGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCT
Intron 2 GTGAGTGGCA ... CATTATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.87 | 215.9 | 30.8 | 15 |
| A2 | 9.43 | 145.5 | 16.5 | 6 |
| A3 | 6.32 | 175.7 | 13.1 | 2 |
| A4 | 7.97 | 140.9 | 12.7 | 5 |
| A5 | 9.53 | 82.3 | 9.9 | 1 |
| A6 | 5.71 | 1278.6 | 87.1 | 20 |
| A7 | 7.98 | 1131.6 | 109.9 | 52 |
| A8 | 8.65 | 1218.7 | 124.9 | 52 |
| A9 | 7.56 | 1238.1 | 111.2 | 24 |
| A10 | 8.19 | 812.5 | 80.2 | 37 |
>TRINITY_DN108001_c0_g1_i4 from sample A3 / Example spliced isoformAGTTTCATGTATCAACTGTGCAAAGGAGTAATCCATTTCCACAGCCATGGAGTGATGCATAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGGTTTATCTGTAAAATCTTTGTTATCT
AACGAAACAGGCCTCATTTGATTTATCATTCCTTAATGTTCTGACGTATTGTTAACTACGATTGCAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGAGT
CGGAAATAGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGAGG
ATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTTGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATGTT
CTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCT
>TRINITY_DN108001_c0_g1_i1 from sample A3 / Example unspliced isoform:ACCTGAGCTTCTGTTGGAACAACGATCAAATCTCACGGCTGACTCCTGCCCTCAACCCGAAAGGGTTATTTAGACTTATAATAAAAAGGAAAGGCAAACCAAGTGGGTTTATTCAAATTTGTTCACATTTGAATGAGATTCAGTTAATCGGCCTTTCTCAGTGCGTGGGTGCGGCTGAGAATACATATCTATTAATCTCA
TCTCTGTAACTGTAATTGATTGGAGCAGTCCAGCATGGATCAATATGAAAAGATTGAAAAAATTGGGCAGGGTGCGTATGGGAAGGTGTACAAGGCCATGGACAAGACCACCGGCCATATTGTTGCTCTCAAGAAGTGCCGCGTTAATTTGCATGAGCAAGGTATTCCTTCTTCCTCGCTTCGCGAAATCTCGCTTCTCA
GGTTGCTCTGCAACGGTTCATATGTTGCTCGGTTGCTTTCTGTGGAGCATGTGGTCAAGAAACAAAAACGATATATTTTCCTGGTATTTGAGTATTTCGACGCAGATTTGAGGAAATTCATAGACTCTTACCGAGACAGCGTCAATCCTGTGACTCTACCACCAAAAATGATTCAGAGTTTCATGTATCAACTGTGCAAA
GGAGTAATCCATTTCCACAGCCATGGAGTGATGCATAGATAAACATAGGTACATGCTTTCTCCAGTATCAGTATTCAATTGGATTTGATTTATTCAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTAC
ACTCATGAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGgtgagtggcattagtaataaaatgtatgaaaaagtttttataatcttaaagttatttctgataatcttgaacccttttacttcttgtcttcattatt
tagCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGAGTCGGAAATAGGCACACTATTACGTATTTTCAGGTATGCTTCCAATGTGAATGCTAAAACTTGTCTAAGCAATAACTCATTTAAACACACAGCAAATTAAACTGATTTGCTTTTCTGATTGAAAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAG
AAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGAGGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTTGACAAGTCTCAATATTGAGTT
TTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTT
TGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCT
Intron 3 GTGAGTGGCA ... TCGGAAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.2 | 108 | 13 | 17 |
| A2 | 6.75 | 76 | 5 | 6 |
| A3 | 5.33 | 80 | 5 | 4 |
| A4 | 12.5 | 49 | 5 | 9 |
| A5 | 6.38 | 44 | 3 | 3 |
| A6 | 2.81 | 640 | 16 | 21 |
| A7 | 6.59 | 631 | 47 | 42 |
| A8 | 8.08 | 631 | 48 | 63 |
| A9 | 4.89 | 661 | 44 | 24 |
| A10 | 6.99 | 446 | 29 | 38 |
>TRINITY_DN45148_c2_g4_i1 from sample A7 / Example spliced isoformCCGGGGTACCTATGTTTATCTGTGAAACAAGAAATTTGAACTCACACAATTACCTCATAGTTTTCATTTCAATTTTCCGTTCGTTTTACACTATATTGTAACACGGCACATCATTATGAACCATTTACTGTAAATTTAAACATATGAAACTATGAGGTAATTGTGTGAGTTCAAATTTCTTGTTTCACAGATAAACATAG
GTACATGCTTTCTCCAGTATCAGTATTCAATTGGATTTGATTTATTCAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTG
GGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGG
AGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGAGGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTAGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTT
ATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCTTTTTCACAGATACTGCATCG
CATGTGAGTTGTTCAAAAATGTTCTAGAAAGCAAATACATCCTACAAACTTTGCATTATTCTCAGTATTTCTTGG
>TRINITY_DN45148_c2_g4_i2 from sample A7 / Example unspliced isoform:ATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGgtgagtggcattagtaataaaatgtatgaaaaagtttttataatcttaaagttatttctgataatcttgaacccttttacttcttgtcttcattatttagctgaaa
tggtgacaacaaatcctcttttccttggtgagtcggaaatagGCACACTATTACGTATTTTCAGGTATGCTTCCAATGTGAATGCTAAAACTTGTCTAAGCAATAACTCATTTAAACACACAGCAAATTAAACTGATTTGCTTTTCTGATTGAAAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAA
GTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTGTATGTTCTTCTTTTTCTGTCAAGCACATGAGGTTTTTTTCTTTTTTCTTTTGCCCTTAAAGATTTAAGATATTTACAATGTTTAATATGGATTACAGAAAATGT
TGGCGTACGATCCAGAAAAGAGGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTAGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACA
TTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCTTTTTCACAGATACTGCATCGCATGTGAGTTGTTCAAAAATGTT
CTAGAAAGCAAATACATCCTACAAACTTTGCATTATTCTCAGTATTTCTTGG
Intron 4 GTGAAGATAT ... TGTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 63 | 63 | 11 |
| A2 | 52.1 | 57 | 62 | 5 |
| A3 | 48.56 | 62.5 | 59 | 7 |
| A4 | 49.15 | 60 | 58 | 7 |
| A5 | 50 | 26 | 26 | 4 |
| A6 | 49.34 | 394.3 | 384 | 20 |
| A7 | 49.57 | 369.8 | 363.5 | 21 |
| A8 | 50.41 | 350.8 | 356.5 | 21 |
| A9 | 49.14 | 444 | 429 | 12 |
| A10 | 49.05 | 354.8 | 341.5 | 19 |
>TRINITY_DN40296_c0_g2_i12 from sample A9 / Example spliced isoformGGTTGCTTTCTGTGGAGCATGTGGTCAAGAAACAAAAACGATATATTTTCCTGGTATTTGAGTATTTCGACGCAGATTTGAGGAAATTCATAGACTCTTACCGAGACAGCGTCAATCCTGTGACTCTACCACCAAAAATGATTCAGAGTTTCATGTATCAACTGTGCAAAGGAGTAATCCATTTCCACAGCCATGGAGTG
ATGCATAGATAAACATAGGTACATGCTTTCTCCAGTATCAGTATTCAATTGGATTTGATTTATTCAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGATTGCTACCTTATGGTATAGG
GCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGAGTCGGAAATAGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTG
GCATATCTATCCTCAATGGAAACCTCAAGATATAAGCAGTGCTGTTCCAGATTTGGAACCAAGTGGTGTAGACCTATTGTCTAAAATGCTGGCTTTTGAGCCCTGCAAGAGAATATCAGCTAAAAAGGCACTGCAACATTCCTACTTCGATGACCTGGATAAATCTCAATTCTGAGAGCCCTTTTAAGGATTTATATGAA
GCATTGTTATTATTTTAATTGGTTTGTGCTATGGTGGTTTTGGAAATGTCCTATTTTCGAAGAACTCATCTTGCAAAGGCAAATATGGTTAGGCAATGTATGTTTTTGATGTGTTTGCACAAGCAAACAAACAATGTTTGGATGCCGTTGAGGACCTTAAATGTTGTATTCCCACATTTTGGAGTAATTTTCCTTAAATT
AATGTTCAGATGTGACATTGTTCAGAGCCTCTTGCGATATTGGTCCTTTATTCTTGTCTCTTACCATTTGAAAGTAATTTTAGAAAATTCAAAGTTGTGTAAGGATCATTTGAGAGATGGATGGCATGAGGATTTTTGAACTTTGTTGAGAATTAAACTCCTAAGTAATAAATAATTTTTCATTGCAAT
>TRINITY_DN40296_c0_g2_i6 from sample A9 / Example unspliced isoform:CTGAGCTTCTGTTGGAACAACGATCAAATCTCACGGCTGACTCCTGCCCTCAACCCGAAAGGGTTATTTAGACTTATAATAAAAAGGAAAGGCAAACCAAGTGGGTTTATTCAAATTTGTTCACATTTGAATGAGATTCAGTTAATCGGCCTTTCTCAGTGCGTGGGTGCGGCTGAGAATACATATCTATTAATCTCATC
TCTGTAACTGTAATTGATTGGAGCAGTCCAGCATGGATCAATATGAAAAGATTGAAAAAATTGGGCAGGGTGCGTATGGGAAGGTGTACAAGGCCATGGACAAGACCACCGGCCATATTGTTGCTCTCAAGAAGTGCCGCGTTAATTTGCATGAGCAAGGTATTCCTTCTTCCTCGCTTCGCGAAATCTCGCTTCTCAGG
TTGCTCTGCAACGGTTCATATGTTGCTCGGTTGCTTTCTGTGGAGCATGTGGTCAAGAAACAAAAACGATATATTTTCCTGGTATTTGAGTATTTCGACGCAGATTTGAGGAAATTCATAGACTCTTACCGAGACAGCGTCAATCCTGTGACTCTACCACCAAAAATGATTCAGAGTTTCATGTATCAACTGTGCAAAGG
AGTAATCCATTTCCACAGCCATGGAGTGATGCATAGgtgaagatattcatatagttttcatttcaattttccgttcgttttacactatattgtaacacggcacatcattatgaaccatttactgtaaatttaaacatatgaaactatgaggtaattgtgtgagttcaaatttcttgtttcacagATAAACATAGGTACAT
GCTTTCTCCAGTATCAGTATTCAATTGGATTTGATTTATTCAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCC
CCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGAGTCGGAAATAGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAACC
TCAAGATATAAGCAGTGCTGTTCCAGATTTGGAACCAAGTGGTGTAGACCTATTGTCTAAAATGCTGGCTTTTGAGCCCTGCAAGAGAATATCAGCTAAAAAGGCACTGCAACATTCCTACTTCGATGACCTGGATAAATCTCAATTCTGAGAGCCCTTTTAAGGATTTATATGAAGCATTGTTATTATTTTAATTGGTT
TGTGCTATGGTGGTTTTGGAAATGTCCTATTTTCGAAGAACTCATCTTGCAAAGGCAAATATGGTTAGGCAATGTATGTTTTTGATGTGTTTGCACAAGCAAACAAACAATGTTTGGATGCCGTTGAGGACCTTAAATGTTGTATTCCCACATTTTGGAGTAATTTTCCTTAAATTAATGTTCAGATGTGACATTGTTCA
GAGCCTCTTGCGATATTGGTCCTTTATTCTTGTCTCTTACCATTTGAAAGTAATTTTAGAAAATTCAAAGTTGTGTAAGGATCATTTGAGAGATGGATGGCATGAGGATTTTTGAACTTTGTTGAGAATTAAACTCCTAAGTAATAAATAATTTTTCATTGCAAT
Intron 5 GTGTCTTTTT ... CTGTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.38 | 242.5 | 57.7 | 20.3 |
| A2 | 5.56 | 224.3 | 50.8 | 14.3 |
| A3 | 5.69 | 203.5 | 40.7 | 13.7 |
| A4 | 4.84 | 229.7 | 76.2 | 13 |
| A5 | 6.83 | 116.2 | 27.7 | 9.3 |
| A6 | 5.02 | 1339.3 | 272.8 | 80.3 |
| A7 | 5.39 | 1195.2 | 255.7 | 76.3 |
| A8 | 5.17 | 1206.5 | 259 | 73.7 |
| A9 | 4.92 | 1377.8 | 264.5 | 82.7 |
| A10 | 4.84 | 1161 | 213.8 | 68.7 |
>TRINITY_DN108001_c0_g1_i1 from sample A3 / Example spliced isoformACCTGAGCTTCTGTTGGAACAACGATCAAATCTCACGGCTGACTCCTGCCCTCAACCCGAAAGGGTTATTTAGACTTATAATAAAAAGGAAAGGCAAACCAAGTGGGTTTATTCAAATTTGTTCACATTTGAATGAGATTCAGTTAATCGGCCTTTCTCAGTGCGTGGGTGCGGCTGAGAATACATATCTATTAATCTCA
TCTCTGTAACTGTAATTGATTGGAGCAGTCCAGCATGGATCAATATGAAAAGATTGAAAAAATTGGGCAGGGTGCGTATGGGAAGGTGTACAAGGCCATGGACAAGACCACCGGCCATATTGTTGCTCTCAAGAAGTGCCGCGTTAATTTGCATGAGCAAGGTATTCCTTCTTCCTCGCTTCGCGAAATCTCGCTTCTCA
GGTTGCTCTGCAACGGTTCATATGTTGCTCGGTTGCTTTCTGTGGAGCATGTGGTCAAGAAACAAAAACGATATATTTTCCTGGTATTTGAGTATTTCGACGCAGATTTGAGGAAATTCATAGACTCTTACCGAGACAGCGTCAATCCTGTGACTCTACCACCAAAAATGATTCAGAGTTTCATGTATCAACTGTGCAAA
GGAGTAATCCATTTCCACAGCCATGGAGTGATGCATAGATAAACATAGGTACATGCTTTCTCCAGTATCAGTATTCAATTGGATTTGATTTATTCAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTAC
ACTCATGAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGGTGAGTGGCATTAGTAATAAAATGTATGAAAAAGTTTTTATAATCTTAAAGTTATTTCTGATAATCTTGAACCCTTTTACTTCTTGTCTTCATTATT
TAGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGAGTCGGAAATAGGCACACTATTACGTATTTTCAGGTATGCTTCCAATGTGAATGCTAAAACTTGTCTAAGCAATAACTCATTTAAACACACAGCAAATTAAACTGATTTGCTTTTCTGATTGAAAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAG
AAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGAGGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTTGACAAGTCTCAATATTGAGTT
TTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTT
TGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCT
>TRINITY_DN108001_c0_g1_i8 from sample A3 / Example unspliced isoform:ACCTGAGCTTCTGTTGGAACAACGATCAAATCTCACGGCTGACTCCTGCCCTCAACCCGAAAGGGTTATTTAGACTTATAATAAAAAGGAAAGGCAAACCAAGTGGGTTTATTCAAATTTGTTCACATTTGAATGAGATTCAGTTAATCGGCCTTTCTCAGTGCGTGGGTGCGGCTGAGAATACATATCTATTAATCTCA
TCTCTGTAACTGTAATTGATTGGAGCAGTCCAGCATGGATCAATATGAAAAGATTGAAAAAATTGGGCAGGGTGCGTATGGGAAGGTGTACAAGGCCATGGACAAGACCACCGGCCATATTGTTGCTCTCAAGAAGTGCCGCGTTAATTTGCATGAGCAAGGTATTCCTTCTTCCTCGCTTCGCGAAATCTCGCTTCTCA
GGTTGCTCTGCAACGGTTCATATGTTGCTCGGTTGCTTTCTGTGGAGCATGTGGTCAAGAAACAAAAACGATATATTTTCCTGGTATTTGAGTATTTCGACGCAGATTTGAGGAAATTCATAGACTCTTACCGAGACAGCGTCAATCCTGTGACTCTACCACCAAAAATGATTCAGgtgtctttttcactgagtctgcgt
gtactttcattctcaataatatttcattatgcaagcagtttttcaaagcaagggctctgatctttttcatgaggttttctgtgtacagAGTTTCATGTATCAACTGTGCAAAGGAGTAATCCATTTCCACAGCCATGGAGTGATGCATAGGTGAAGATATTCATATAGTTTTCATTTCAATTTTCCGTTCGTTTTACACT
ATATTGTAACACGGCACATCATTATGAACCATTTACTGTAAATTTAAACATATGAAACTATGAGGTAATTGTGTGAGTTCAAATTTCTTGTTTCACAGATAAACATAGGTACATGCTTTCTCCAGTATCAGTATTCAATTGGATTTGATTTATTCAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGC
TTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGA
GTCGGAAATAGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGA
GGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTTGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATG
TTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCT
Intron 6 GTTTATCTGT ... ACGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.37 | 251.3 | 54.1 | 37.1 |
| A2 | 12.61 | 166.8 | 25.1 | 19 |
| A3 | 17.56 | 193.2 | 42.1 | 22.4 |
| A4 | 12.26 | 156.6 | 22.3 | 17.9 |
| A5 | 15.21 | 101.7 | 18.7 | 13.6 |
| A6 | 11.77 | 1321.9 | 183 | 117.7 |
| A7 | 11.86 | 1254.9 | 173.1 | 105.1 |
| A8 | 12.79 | 1339.2 | 202.6 | 130.8 |
| A9 | 13.64 | 1371.6 | 225.3 | 127 |
| A10 | 13.88 | 930.1 | 155.6 | 90.6 |
>TRINITY_DN108001_c0_g1_i8 from sample A3 / Example spliced isoformACCTGAGCTTCTGTTGGAACAACGATCAAATCTCACGGCTGACTCCTGCCCTCAACCCGAAAGGGTTATTTAGACTTATAATAAAAAGGAAAGGCAAACCAAGTGGGTTTATTCAAATTTGTTCACATTTGAATGAGATTCAGTTAATCGGCCTTTCTCAGTGCGTGGGTGCGGCTGAGAATACATATCTATTAATCTCA
TCTCTGTAACTGTAATTGATTGGAGCAGTCCAGCATGGATCAATATGAAAAGATTGAAAAAATTGGGCAGGGTGCGTATGGGAAGGTGTACAAGGCCATGGACAAGACCACCGGCCATATTGTTGCTCTCAAGAAGTGCCGCGTTAATTTGCATGAGCAAGGTATTCCTTCTTCCTCGCTTCGCGAAATCTCGCTTCTCA
GGTTGCTCTGCAACGGTTCATATGTTGCTCGGTTGCTTTCTGTGGAGCATGTGGTCAAGAAACAAAAACGATATATTTTCCTGGTATTTGAGTATTTCGACGCAGATTTGAGGAAATTCATAGACTCTTACCGAGACAGCGTCAATCCTGTGACTCTACCACCAAAAATGATTCAGGTGTCTTTTTCACTGAGTCTGCGT
GTACTTTCATTCTCAATAATATTTCATTATGCAAGCAGTTTTTCAAAGCAAGGGCTCTGATCTTTTTCATGAGGTTTTCTGTGTACAGAGTTTCATGTATCAACTGTGCAAAGGAGTAATCCATTTCCACAGCCATGGAGTGATGCATAGGTGAAGATATTCATATAGTTTTCATTTCAATTTTCCGTTCGTTTTACACT
ATATTGTAACACGGCACATCATTATGAACCATTTACTGTAAATTTAAACATATGAAACTATGAGGTAATTGTGTGAGTTCAAATTTCTTGTTTCACAGATAAACATAGGTACATGCTTTCTCCAGTATCAGTATTCAATTGGATTTGATTTATTCAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGC
TTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGA
GTCGGAAATAGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGA
GGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTTGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATG
TTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCT
>TRINITY_DN108001_c0_g1_i4 from sample A3 / Example unspliced isoform:AGTTTCATGTATCAACTGTGCAAAGGAGTAATCCATTTCCACAGCCATGGAGTGATGCATAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGgtttatctgtaaaatctttgttatct
aacgaaacaggcctcatttgatttatcattccttaatgttctgacgtattgttaactacgattgcagATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGAGT
CGGAAATAGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGAGG
ATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTTGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATGTT
CTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCT
Intron 7 GTGAAGATAT ... ATTTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.71 | 269 | 27.7 | 61 |
| A2 | 10.46 | 185 | 24.7 | 35.8 |
| A3 | 8.64 | 211 | 22.6 | 44.4 |
| A4 | 9.63 | 170 | 21.3 | 30.2 |
| A5 | 8.82 | 100 | 10.7 | 25.6 |
| A6 | 8.1 | 1283 | 133.3 | 234.9 |
| A7 | 8.93 | 1143 | 131.1 | 217.3 |
| A8 | 8.46 | 1219 | 130.1 | 245.1 |
| A9 | 7.95 | 1422 | 146.1 | 253.4 |
| A10 | 7.96 | 1129 | 116.3 | 187.4 |
>TRINITY_DN108001_c0_g1_i5 from sample A3 / Example spliced isoformACCTGAGCTTCTGTTGGAACAACGATCAAATCTCACGGCTGACTCCTGCCCTCAACCCGAAAGGGTTATTTAGACTTATAATAAAAAGGAAAGGCAAACCAAGTGGGTTTATTCAAATTTGTTCACATTTGAATGAGATTCAGTTAATCGGCCTTTCTCAGTGCGTGGGTGCGGCTGAGAATACATATCTATTAATCTCA
TCTCTGTAACTGTAATTGATTGGAGCAGTCCAGCATGGATCAATATGAAAAGATTGAAAAAATTGGGCAGGGTGCGTATGGGAAGGTGTACAAGGCCATGGACAAGACCACCGGCCATATTGTTGCTCTCAAGAAGTGCCGCGTTAATTTGCATGAGCAAGGTATTCCTTCTTCCTCGCTTCGCGAAATCTCGCTTCTCA
GGTTGCTCTGCAACGGTTCATATGTTGCTCGGTTGCTTTCTGTGGAGCATGTGGTCAAGAAACAAAAACGATATATTTTCCTGGTATTTGAGTATTTCGACGCAGATTTGAGGAAATTCATAGACTCTTACCGAGACAGCGTCAATCCTGTGACTCTACCACCAAAAATGATTCAGAGTTTCATGTATCAACTGTGCAAA
GGAGTAATCCATTTCCACAGCCATGGAGTGATGCATAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAA
CTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGAGTCGGAAATAGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGA
ATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGAGGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTTGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATAT
TAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTAT
ATATATTCAAGTCTCCT
>TRINITY_DN108001_c0_g1_i8 from sample A3 / Example unspliced isoform:ACCTGAGCTTCTGTTGGAACAACGATCAAATCTCACGGCTGACTCCTGCCCTCAACCCGAAAGGGTTATTTAGACTTATAATAAAAAGGAAAGGCAAACCAAGTGGGTTTATTCAAATTTGTTCACATTTGAATGAGATTCAGTTAATCGGCCTTTCTCAGTGCGTGGGTGCGGCTGAGAATACATATCTATTAATCTCA
TCTCTGTAACTGTAATTGATTGGAGCAGTCCAGCATGGATCAATATGAAAAGATTGAAAAAATTGGGCAGGGTGCGTATGGGAAGGTGTACAAGGCCATGGACAAGACCACCGGCCATATTGTTGCTCTCAAGAAGTGCCGCGTTAATTTGCATGAGCAAGGTATTCCTTCTTCCTCGCTTCGCGAAATCTCGCTTCTCA
GGTTGCTCTGCAACGGTTCATATGTTGCTCGGTTGCTTTCTGTGGAGCATGTGGTCAAGAAACAAAAACGATATATTTTCCTGGTATTTGAGTATTTCGACGCAGATTTGAGGAAATTCATAGACTCTTACCGAGACAGCGTCAATCCTGTGACTCTACCACCAAAAATGATTCAGGTGTCTTTTTCACTGAGTCTGCGT
GTACTTTCATTCTCAATAATATTTCATTATGCAAGCAGTTTTTCAAAGCAAGGGCTCTGATCTTTTTCATGAGGTTTTCTGTGTACAGAGTTTCATGTATCAACTGTGCAAAGGAGTAATCCATTTCCACAGCCATGGAGTGATGCATAGgtgaagatattcatatagttttcatttcaattttccgttcgttttacact
atattgtaacacggcacatcattatgaaccatttactgtaaatttaaacatatgaaactatgaggtaattgtgtgagttcaaatttcttgtttcacagataaacataggtacatgctttctccagtatcagtattcaattggatttgatttattcagGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGC
TTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGA
GTCGGAAATAGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGA
GGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTTGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATG
TTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCT
Intron 8 GTATGTTCTT ... TGGATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.21 | 183 | 39 | 48 |
| A2 | 16.94 | 144.7 | 32 | 27 |
| A3 | 25.69 | 175 | 44 | 77 |
| A4 | 17.65 | 105 | 19 | 26 |
| A5 | 20.06 | 85.7 | 23 | 20 |
| A6 | 20.86 | 1932.5 | 398 | 621 |
| A7 | 20.32 | 1630.7 | 309 | 523 |
| A8 | 20.04 | 2248.5 | 402 | 725 |
| A9 | 19.35 | 1804.7 | 325 | 541 |
| A10 | 20.26 | 1029 | 192 | 331 |
>TRINITY_DN45148_c2_g4_i1 from sample A7 / Example spliced isoformCCGGGGTACCTATGTTTATCTGTGAAACAAGAAATTTGAACTCACACAATTACCTCATAGTTTTCATTTCAATTTTCCGTTCGTTTTACACTATATTGTAACACGGCACATCATTATGAACCATTTACTGTAAATTTAAACATATGAAACTATGAGGTAATTGTGTGAGTTCAAATTTCTTGTTTCACAGATAAACATAG
GTACATGCTTTCTCCAGTATCAGTATTCAATTGGATTTGATTTATTCAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTG
GGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGGCACACTATTACGTATTTTCAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGG
AGTCGATCTTCTCAGTAAAATGTTGGCGTACGATCCAGAAAAGAGGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTAGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTT
ATGTTCTTTAAATCGTAGCTACATTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCTTTTTCACAGATACTGCATCG
CATGTGAGTTGTTCAAAAATGTTCTAGAAAGCAAATACATCCTACAAACTTTGCATTATTCTCAGTATTTCTTGG
>TRINITY_DN45148_c2_g4_i2 from sample A7 / Example unspliced isoform:ATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGGTGAGTGGCATTAGTAATAAAATGTATGAAAAAGTTTTTATAATCTTAAAGTTATTTCTGATAATCTTGAACCCTTTTACTTCTTGTCTTCATTATTTAGCTGAAA
TGGTGACAACAAATCCTCTTTTCCTTGGTGAGTCGGAAATAGGCACACTATTACGTATTTTCAGGTATGCTTCCAATGTGAATGCTAAAACTTGTCTAAGCAATAACTCATTTAAACACACAGCAAATTAAACTGATTTGCTTTTCTGATTGAAAGGTTGCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAA
GTCTAACAGACTGGCATATCTATCCTCAATGGAAGCCTGAGAATCTAGCTTCAATATTTCCAAATTTATCGCTTAGGGGAGTCGATCTTCTCAGTgtatgttcttctttttctgtcaagcacatgaggtttttttcttttttcttttgcccttaaagatttaagatatttacaatgtttaatatggattacagAAAATGT
TGGCGTACGATCCAGAAAAGAGGATTTCAGCAAAGGAGGCCGTGGATCACCCTTACTTTGATGATCTAGACAAGTCTCAATATTGAGTTTTTCTTATCTATGATGCTTTTAAGGATACCAGAGCCTTTAGATCTGCATATTAAAAGAACTGGTTTCAAGCTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTACA
TTTTGCAATATATTCTTTATGTTCTTTAAATCGTAGCTGCATTTTGCAATATATTCTTTATATTCTTTAAATCGTAGCTGCATAAGCTTTGGTCCGCTTGTTCAACTTAATCTGTTTGCAAAATCAAACGATTTTACTATATATATTCAAGTCTCCTTTTTCACAGATACTGCATCGCATGTGAGTTGTTCAAAAATGTT
CTAGAAAGCAAATACATCCTACAAACTTTGCATTATTCTCAGTATTTCTTGG
Intron 9 GTAAGAGTCC ... GTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.32 | 83.8 | 0 | 14 |
| A2 | 15.78 | 122.8 | 0 | 23 |
| A3 | 11.67 | 106 | 0 | 14 |
| A4 | 13.33 | 78 | 0 | 12 |
| A5 | 11.86 | 52 | 0 | 7 |
| A6 | 12.82 | 1156.3 | 1 | 170 |
| A7 | 12.14 | 1034.5 | 2 | 143 |
| A8 | 14.02 | 1226.8 | 1 | 200 |
| A9 | 13.31 | 1478.5 | 0 | 227 |
| A10 | 10.65 | 805.3 | 1 | 96 |
>TRINITY_DN40296_c0_g2_i11 from sample A9 / Example spliced isoformCTGAGCTTCTGTTGGAACAACGATCAAATCTCACGGCTGACTCCTGCCCTCAACCCGAAAGGGTTATTTAGACTTATAATAAAAAGGAAAGGCAAACCAAGTGGGTTTATTCAAATTTGTTCACATTTGAATGAGATTCAGTTAATCGGCCTTTCTCAGTGCGTGGGTGCGGCTGAGAATACATATCTATTAATCTCATC
TCTGTAACTGTAATTGATTGGAGCAGTCCAGCATGGATCAATATGAAAAGATTGAAAAAATTGGGCAGGGTGCGTATGGGAAGGTGTACAAGGCCATGGACAAGACCACCGGCCATATTGTTGCTCTCAAGAAGTGCCGCGTTAATTTGCATGAGCAAGGTATTCCTTCTTCCTCGCTTCGCGAAATCTCGCTTCTCAGG
TTGCTCTGCAACGGTTCATATGTTGCTCGGTTGCTTTCTGTGGAGCATGTGGTCAAGAAACAAAAACGATATATTTTCCTGGTATTTGAGTATTTCGACGCAGATTTGAGGAAATTCATAGACTCTTACCGAGACAGCGTCAATCCTGTGACTCTACCACCAAAAATGATTCAGAGTTTCATGTATCAACTGTGCAAAGG
AGTAATCCATTTCCACAGCCATGGAGTGATGCATAGGGATTTAAAGCCACAGAATCTGTTGGTGGACAACAAGAAAGGCTTACTTAAAATTGGAGATCTGGGTCTTGGAAGAGCGTTTTCTGTGCCCATCAAGAATTACACTCATGAGGTTTATCTGTAAAATCTTTGTTATCTAACGAAACAGGCCTCATTTGATTTAT
CATTCCTTAATGTTCTGACGTATTGTTAACTACGATTGCAGATTGCTACCTTATGGTATAGGGCTCCAGAGGTATTGTTGGGATCCCCCAACTATTCCACGGGTGTAGATATTTGGTCTGTTGGATGCATTTTTGGTGAGTGGCATTAGTAATAAAATGTATGAAAAAGTTTTTATAATCTTAAAGTTATTTCTGATAAT
CTTGAACCCTTTTACTTCTTGTCTTCATTATTTAGCTGAAATGGTGACAACAAATCCTCTTTTCCTTGGTGAGTCGGAAATAGGCACACTATTACGTATTTTCAGGTATGCTTCCAATGTGAATGCTAAAACTTGTCTAAGCAATAACTCATTTAAACACACAGCAAATTAAACTGATTTGCTTTTCTGATTGAAAGGTT
GCTGGGAACCCCAACCGAAGAAATGTGGCCAGAAGTAAAAAGTCTAACAGACTGGCATATCTATCCTCAATGGAAACCTCAAGATATAAGCAGTGCTGTTCCAGATTTGGAACCAAGTGGTGTAGACCTATTGTCTAAAATGCTGGCTTTTGAGCCCTGCAAGAGAATATCAGCTAAAAAGGCACTGCAACATTCCTACT
TCGATGACCTGGATAAATCTCAATTCTGAGAGCCCTTTTAAGGATTTATATGAAGCATTGTTATTATTTTAATTGGTTTGTGCTATGGTGGTTTTGGAAATGTCCTATTTTCGAAGAACTCATCTTGCAAAGGCAAATATGGTTAGGCAATGTATGTTTTTGATGTGTTTGCACAAGCAAACAAACAATGTTTGGATGCC
GTTGAGGACCTTAAATGTTGTATTCCCACATTTTGGAGTAATTTTCCTTAAATTAATGTTCAGATGTGACATTGTTCAGAGCCTCTTGCGATATTGGTCCTTTATTCTTGTCTCTTACCATTTGAAAGTAATTTTAGAAAATTCAAAGTTGTGTAAGGATCATTTGAGAGATGGATGGCATGAGGATTTTTGAACTTTGT
TGAGAATTAAACTCCTAAGTAATAAATAATTTTTCATTGCAAT
>TRINITY_DN40296_c0_g2_i7 from sample A9 / Example unspliced isoform:CAAGTGGTGTAGACCTATTGTCTgtaagagtccttaacctgtattcttgtccccataccttgtatatatttatatatatctttgtttctttgtaggtttattagactgaagagatttgaattcatgtgtttttgcagAAAATGCTGGCTTTTGAGCCCTGCAAGAGAATATCAGCTAAAAAGGCACTGCAACATTCCTAC
TTCGATGACCTGGATAAATCTCAATTCTGAGAGCCCTTTTAAGGATTTATATGAAGCATTGTTATTATTTTAATTGGTTTGTGCTATGGTGGTTTTGGAAATGTCCTATTTTCGAAGAACTCATCTTGCAAAGGCAAATATGGTTAGGCAATGTATGTTTTTGATGTGTTTGCACAAGCAAACAAACAATGTTTGGATGC
CGTTGAGGACCTTAAATGTTGTATTCCCACATTTTGGAGTAATTTTCCTTAAATTAATGTTCAGATGTGACATTGTTCAGAGCCTCTTGCGATATTGGTCCTTTATTCTTGTCTCTTACCATTTGAAAGTAATTTTAGAAAATTCAAAGTTGTGTAAGGATCATTTGAGAGATGGATGGCATGAGGATTTTTGAACTTTG
TTGAGAATTAAACTCCTAAGTAATAAATAATTTTTCATTGCAAT