sp|Q9LHE5|TO401_ARATH ----> Mitochondrial import receptor subunit TOM40-1
Intron 1 GTATCATTTC ... TTTGGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.84 | 84 | 74 | 8 |
| A2 | 46.88 | 57.8 | 51 | 11 |
| A3 | 47.46 | 62 | 56 | 13 |
| A4 | 44.27 | 56.4 | 44.8 | 15 |
| A5 | 48.93 | 33.4 | 32 | 5 |
| A6 | 46.72 | 122 | 107 | 14 |
| A7 | 46.63 | 224.4 | 196 | 23 |
| A8 | 46.15 | 161 | 138 | 23 |
| A9 | 48.6 | 165 | 156 | 13 |
| A10 | 47.08 | 136 | 121 | 2 |
>TRINITY_DN106859_c0_g2_i1 from sample A3 / Example spliced isoformGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTACTTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAG
CTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGGATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAG
AAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAGTCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCA
AAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAACCACATTTCTCTCAAGGGATGTTCAACTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGG
TGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGGCTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGT
CTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTACTTTTTACGACAGCTTTCCACATATGAAGATTTCAACTTCAGCGATGTATTTAAAGCACACAAATAGCTGTGTGAATCTTCCCTTTGTGGGGCATTGATGAATTTCATTATGAGCTTGGTGGAAACAGTGTCGCCTCCGGGG
AAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAG
>TRINITY_DN106859_c0_g2_i19 from sample A3 / Example unspliced isoform:GTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTACTTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAG
CTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGGATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAG
AAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAGTCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCA
AAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAACCACATTTCTCTCAAGGGATGTTCAACTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGG
TGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGGCTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGT
CTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTACTTTTTACGACAGgtatcatttcattagcttctcacaatgttattcatggttccaaataggactttcgatttttcttttggtgtagCTTTCCACATATGAAGATTTCAACTTCAGCGATGTATTTAAAGCACACAAATAGCT
GTGTGAATCTTCCCTTTGTGGGGCATTGATGAATTTCATTATGAGCTTGGTGGAAACAGGTAATTTGTTGTGTTTTCAGATTCTATTTTGATATTTTGTTTTTTATGGCGGGGGACTTGGTGAAGTAAATTTGCTTTATGAAGAATTTCAAGAATAGCCTACCTTTCGAGGTCAACT
Intron 2 GTTGATTGTC ... ACAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.73 | 171 | 14 | 75.9 |
| A2 | 28.6 | 122 | 23.6 | 48.9 |
| A3 | 29.29 | 110 | 13.3 | 45.6 |
| A4 | 25.87 | 122 | 18.1 | 42.6 |
| A5 | 30.68 | 61 | 8.3 | 27 |
| A6 | 42.92 | 137 | 14.3 | 103 |
| A7 | 30.86 | 280 | 30.7 | 125 |
| A8 | 36.23 | 213 | 33.4 | 121 |
| A9 | 33.77 | 243.4 | 36.4 | 124.1 |
| A10 | 36.49 | 182 | 25 | 104.6 |
>TRINITY_DN106859_c0_g2_i15 from sample A3 / Example spliced isoformGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTACTTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAG
CTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGGATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAG
AAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAGTCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCA
AAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAACCACATTTCTCTCAAGGGATGTTCAACTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGG
TGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGGCTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGT
CTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTACTTTTTACGACAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAGATCGATCACTGGAAGAAGGATTACAAATTTGGA
TTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCCGAATGCTTATTGCTAGGTTATTTGCATCAGTGGCAGGTCATTGAATAACAACGATTTTTGGAGTTTATGAACATCAGCTGTGCCTGATGAAATTCATGAGCTGTATCTGCTCCTGTAT
TGTCTGCAGAGCGTTTATTGGAGCTCTTTGTAGACCTATTAAGATTATTTTTACAGTGCGGCAATTTTTAATGGAAAAACAAAAATGAGTTTTAAACTTCTGTATCAAAGTGATTATAGCATACATGCTTTCTACCTGAATAAAAGTCATTGCTTTTTTGAAAGTTTCATGTACTGTACTTGGAAGATATCTTCAGCATA
TTTGATATTGAAATATGTATTCTTTCTGGCTGGACTTTGAAAACCACTACAAGGAGAAAAAC
>TRINITY_DN106859_c0_g2_i4 from sample A3 / Example unspliced isoform:CAGAAGTCTTCTCTCAGCCATAGGCAATTCCTTGCTCCTTGTCATGTTTTCAAAATCTGTTTTTTTTTGTTAGAGGAGGAAATTCTTTCTTTCTCACAGGTTTTCTTGGAACTTTCTAGCAGTATTTTTGAGTTGCATATTCTTGTTTTCTCAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAGTCAACAGATATA
ATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGgttgattgtcaggatcatggttcatattttctaatttatttgtttatttattctcaagctgaaattgatctcatgctaggagattaactatttttttggaaatgtaaacttggacaggaatttgagcagagccagttttaccatta
ttgccaattttgtaggaaatgataacaaatgaatctcttcacaatttcagCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAACCACATTTCTCTCAAGGGATGTTCAACTTTGATTACAAGGGT
AAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGA
Intron 3 GTAATTTGTT ... ATAAATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.18 | 10 | 6 | 8 |
| A2 | 50 | 18 | 20 | 16 |
| A3 | 54.55 | 5 | 5 | 7 |
| A4 | 41.18 | 15 | 9 | 12 |
| A5 | 35.71 | 9 | 6 | 4 |
| A6 | 30.43 | 16 | 5 | 9 |
| A7 | 28.7 | 41 | 16 | 17 |
| A8 | 32.84 | 45 | 18 | 26 |
| A9 | 25.58 | 32 | 4 | 18 |
| A10 | 33.33 | 15 | 8 | 7 |
>TRINITY_DN42674_c0_g3_i4 from sample A9 / Example spliced isoformCCTGCTTAAACCCATACTGACCCATGGTTAAAGTGAAACCCCAGCCCTGGTTGAGGGATACGCGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTAC
TTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAGCTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGG
ATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAGAAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAG
TCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAGCCACATTTCTCTCAAGGGATGTTCAA
CTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTTCATGTACAATCATACAACAAGAGATGCAACTA
CTAGTTTTGGTTATGATTACTTTTTACGACAGCTTTCCACATATGAAGATTTCAACTTCAGCGATGTATTTAAAGCACACAAATAGCTGTGTGAATCTTCCCTTTGTGGGGCATTGATGAATTTCATTATGAGCTTGGTGGAAACAGGACAACATGGAGCAAGCTTGAGTAGTGCATTGCATTACTATTCTATTATTACA
TGAAGAGGAATCTCCGTGGAAAGAAGCTTCATATAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAGATTGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTC
CGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCC
>TRINITY_DN42674_c0_g3_i3 from sample A9 / Example unspliced isoform:CCTGCTTAAACCCATACTGACCCATGGTTAAAGTGAAACCCCAGCCCTGGTTGAGGGATACGCGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTAC
TTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAGCTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGG
ATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAGAAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAG
TCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAGCCACATTTCTCTCAAGGGATGTTCAA
CTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGGCTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATTGCAACAGGCCAAATTG
CAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTACTTTTTACGACAGGTATCATTTCATTAGCTTCTCACAATGTTTTTCATGGTTCCAAATAGGACTTTCGATTTTTCTTTT
GGTGTAGCTTTCCACATATGAAGATTTCAACTTCAGCGATGTATTTAAAGCACACAAATAGCTGTGTGAATCTTCCCTTTGTGGGGCATTGATGAATTTCATTATGAGCTTGGTGGAAACAGgtaatttgttgtgttttcagattctattttgatattttgttttttatggcgggggacttggtgaagtaaatttgcttt
atgaagaatttcaagaatagcctacctttcgaggtcaactggtttgcaatgacgaataaatgtgcattgctaatcaaagatggtaaatctccctccttaagaggggatgctggtcatacactctgtttgtcaaagaattgtgaagatcatataatatgctagctgatatatcaatgacgattgttaggatatggtgaatc
atgcttgtattgtcattaagcctcccatcaaatatacttgtctttcatttaaaacttttatatatttatttatttacttataattattctatcaatcacctaactgttattattgttatttctattggatctcacgataaataaagGACAACATGGAGCAAGCTTGAGTAGTGCATTGCATTACTATTCTATTATTACAT
GAAGAGGAATCTCCGTGGAAAGAAGCTTCATATAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAGATTGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCC
GCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCC
Intron 4 GTATCATTTC ... CTTCATATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.55 | 153 | 74 | 31 |
| A2 | 26.44 | 153 | 51 | 59 |
| A3 | 26.52 | 115 | 56 | 27 |
| A4 | 28.1 | 110 | 45 | 41 |
| A5 | 21.65 | 76 | 32 | 10 |
| A6 | 22.96 | 297 | 107 | 70 |
| A7 | 23.98 | 477 | 196 | 105 |
| A8 | 24.29 | 452 | 138 | 152 |
| A9 | 23.49 | 417 | 156 | 100 |
| A10 | 25.35 | 290 | 121 | 76 |
>TRINITY_DN42674_c0_g3_i8 from sample A9 / Example spliced isoformCCTGCTTAAACCCATACTGACCCATGGTTAAAGTGAAACCCCAGCCCTGGTTGAGGGATACGCGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTAC
TTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAGCTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGG
ATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAGAAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAG
TCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAGCCACATTTCTCTCAAGGGATGTTCAA
CTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGGCTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATTGCAACAGGCCAAATTG
CAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTACTTTTTACGACAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAAT
ATGGGAGTCAATTTTGTTCTTTCTGCAGAGATTGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCC
>TRINITY_DN42674_c0_g3_i2 from sample A9 / Example unspliced isoform:CCTGCTTAAACCCATACTGACCCATGGTTAAAGTGAAACCCCAGCCCTGGTTGAGGGATACGCGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTAC
TTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAGCTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGG
ATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAGAAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAG
TCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGGAATTTGAGCAGAGCCAGTTTTACCATTATTGCCAATTTTGTAGGAAATGATAACAAATGAATCTCTTCACAATTTCAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGG
CTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAGCCACATTTCTCTCAAGGGATGTTCAACTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGG
CTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTA
CTTTTTACGACAGgtatcatttcattagcttctcacaatgtttttcatggttccaaataggactttcgatttttcttttggtgtagctttccacatatgaagatttcaacttcagcgatgtatttaaagcacacaaatagctgtgtgaatcttccctttgtggggcattgatgaatttcattatgagcttggtggaaaca
ggtaatttgttgtgttttcagattctattttgatattttgttttttatggcgggggacttggtgaagtaaatttgctttatgaagaatttcaagaatagcctacctttcgaggtcaactggtttgcaatgacgaataaatgtgcattgctaatcaaagatggtaaatctccctccttaagaggggatgctggtcatacac
tctgtttgtcaaagaattgtgaagatcatataatatgctagctgatatatcaatgacgattgttaggatatggtgaatcatgcttgtattgtcattaagcctcccatcaaatatacttgtctttcatttaaaacttttatatatttatttatttacttataattattctatcaatcacctaactgttattattgttattt
ctattggatctcacgataaataaaggacaacatggagcaagcttgagtagtgcattgcattactattctattattacatgaagaggaatctccgtggaaagaagcttcatatagTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCT
TTCTGCAGAGATTGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCC
Intron 5 GTGACAACTT ... ATTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.6 | 73 | 7 | 52 |
| A2 | 44.16 | 43 | 1 | 34 |
| A3 | 42.67 | 43 | 5 | 32 |
| A4 | 45.31 | 35 | 7 | 29 |
| A5 | 42.86 | 20 | 0 | 15 |
| A6 | 39.74 | 94 | 0 | 62 |
| A7 | 45.75 | 134 | 0 | 113 |
| A8 | 43.33 | 136 | 0 | 104 |
| A9 | 43.65 | 102 | 0 | 79 |
| A10 | 41.1 | 86 | 0 | 60 |
>TRINITY_DN116090_c1_g1_i4 from sample A1 / Example spliced isoformTCGATATAACGCAGATAAGATGACGACGGGAGTTGAAGGAACATGGTCAAGAGAATGCTAGAAGTGGGAGAAATTTGTGATATTCTATGTGCTCAAGTTACAATATGCAAGATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTT
CATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTACTTTTTACGACAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAGATCGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGA
TGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCCGAATGCTTATTGCTAGGTTATTTGCATCAGTGGCAGGTCATTGAATAACAACGATTTTTGGAGTTTATGAACATCAGCTGTGCCTGATGAAATTCATGAGCTGTATCTGCTCCTGTATTGTCTGC
AGAGTGTTTATTGGAGCTCTTTGTAGACCTATTAAGATTATTTTTACAGTGCGGCAATTTTTAATGGAAAAACAAAAATGAGTTTTCAACTTCTGTATCAAAGTGATTATAGCATACATGCTTTCTACCTGAATAAAAGTCATTGCT
>TRINITY_DN116090_c1_g1_i6 from sample A1 / Example unspliced isoform:TCGATATAACGCAGATAAGATGACGACGGGAGTTGAAGGAACATGGTCAAGAGAATGCTAGAAGTGGGAGAAATTTGTGATATTCTATGTGCTCAAGTTACAATATGCAAGgtgacaactttggatgtttctataatcgtaaaataagtataagcagattgatattatccttgttaatccggggaatggcttcatttgtg
cagATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTACTTTTTACGACAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGC
TTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAGATCGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCCGAATGCTTATTGCTAGGTTATTTGCATCAGTGG
CAGGTCATTGAATAACAACGATTTTTGGAGTTTATGAACATCAGCTGTGCCTGATGAAATTCATGAGCTGTATCTGCTCCTGTATTGTCTGCAGAGTGTTTATTGGAGCTCTTTGTAGACCTATTAAGATTATTTTTACAGTGCGGCAATTTTTAATGGAAAAACAAAAATGAGTTTTCAACTTCTGTATCAAAGTGATT
ATAGCATACATGCTTTCTACCTGAATAAAAGTCATTGCT
Intron 6 GCAATTCCTT ... GTTTTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.77 | 130.2 | 0 | 1 |
| A2 | 3.22 | 90.6 | 0 | 3 |
| A3 | 5.08 | 93.6 | 1 | 5 |
| A4 | 2.33 | 83.8 | 1 | 2 |
| A5 | 0 | 33.6 | 0 | 0 |
| A6 | 2.52 | 116.2 | 0 | 3 |
| A7 | 2.08 | 235.4 | 0 | 5 |
| A8 | 3.51 | 192.8 | 1 | 7 |
| A9 | 2.45 | 238.6 | 0 | 6 |
| A10 | 1.99 | 197.6 | 3 | 4 |
>TRINITY_DN106859_c0_g2_i15 from sample A3 / Example spliced isoformGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTACTTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAG
CTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGGATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAG
AAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAGTCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCA
AAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAACCACATTTCTCTCAAGGGATGTTCAACTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGG
TGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGGCTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGT
CTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTACTTTTTACGACAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAGATCGATCACTGGAAGAAGGATTACAAATTTGGA
TTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCCGAATGCTTATTGCTAGGTTATTTGCATCAGTGGCAGGTCATTGAATAACAACGATTTTTGGAGTTTATGAACATCAGCTGTGCCTGATGAAATTCATGAGCTGTATCTGCTCCTGTAT
TGTCTGCAGAGCGTTTATTGGAGCTCTTTGTAGACCTATTAAGATTATTTTTACAGTGCGGCAATTTTTAATGGAAAAACAAAAATGAGTTTTAAACTTCTGTATCAAAGTGATTATAGCATACATGCTTTCTACCTGAATAAAAGTCATTGCTTTTTTGAAAGTTTCATGTACTGTACTTGGAAGATATCTTCAGCATA
TTTGATATTGAAATATGTATTCTTTCTGGCTGGACTTTGAAAACCACTACAAGGAGAAAAAC
>TRINITY_DN106859_c0_g2_i4 from sample A3 / Example unspliced isoform:CAGAAGTCTTCTCTCAGCCATAGgcaattccttgctccttgtcatgttttcaaaatctgtttttttttgttagaggaggaaattctttctttctcacaggttttcttggaactttctagcagtatttttgagttgcatattcttgttttctcagTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAGTCAACAGATATA
ATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGGTTGATTGTCAGGATCATGGTTCATATTTTCTAATTTATTTGTTTATTTATTCTCAAGCTGAAATTGATCTCATGCTAGGAGATTAACTATTTTTTTGGAAATGTAAACTTGGACAGGAATTTGAGCAGAGCCAGTTTTACCATTA
TTGCCAATTTTGTAGGAAATGATAACAAATGAATCTCTTCACAATTTCAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAACCACATTTCTCTCAAGGGATGTTCAACTTTGATTACAAGGGT
AAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGA
Intron 7 GTAATTTGTT ... CTTCATATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.29 | 39 | 6 | 31 |
| A2 | 57.28 | 44 | 20 | 59 |
| A3 | 55.1 | 22 | 5 | 27 |
| A4 | 53.95 | 35 | 9 | 41 |
| A5 | 58.82 | 7 | 6 | 10 |
| A6 | 53.44 | 61 | 5 | 70 |
| A7 | 47.51 | 116 | 16 | 105 |
| A8 | 52.05 | 140 | 18 | 152 |
| A9 | 57.47 | 74 | 4 | 100 |
| A10 | 55.07 | 62 | 8 | 76 |
>TRINITY_DN42674_c0_g3_i6 from sample A9 / Example spliced isoformCCTGCTTAAACCCATACTGACCCATGGTTAAAGTGAAACCCCAGCCCTGGTTGAGGGATACGCGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTAC
TTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAGCTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGG
ATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAGAAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAG
TCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAGCCACATTTCTCTCAAGGGATGTTCAA
CTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTTCATGTACAATCATACAACAAGAGATGCAACTA
CTAGTTTTGGTTATGATTACTTTTTACGACAGCTTTCCACATATGAAGATTTCAACTTCAGCGATGTATTTAAAGCACACAAATAGCTGTGTGAATCTTCCCTTTGTGGGGCATTGATGAATTTCATTATGAGCTTGGTGGAAACAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGA
AGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAGATTGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCC
>TRINITY_DN42674_c0_g3_i2 from sample A9 / Example unspliced isoform:CCTGCTTAAACCCATACTGACCCATGGTTAAAGTGAAACCCCAGCCCTGGTTGAGGGATACGCGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTAC
TTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAGCTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGG
ATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAGAAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAG
TCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGGAATTTGAGCAGAGCCAGTTTTACCATTATTGCCAATTTTGTAGGAAATGATAACAAATGAATCTCTTCACAATTTCAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGG
CTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAGCCACATTTCTCTCAAGGGATGTTCAACTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGG
CTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTA
CTTTTTACGACAGGTATCATTTCATTAGCTTCTCACAATGTTTTTCATGGTTCCAAATAGGACTTTCGATTTTTCTTTTGGTGTAGCTTTCCACATATGAAGATTTCAACTTCAGCGATGTATTTAAAGCACACAAATAGCTGTGTGAATCTTCCCTTTGTGGGGCATTGATGAATTTCATTATGAGCTTGGTGGAAACA
Ggtaatttgttgtgttttcagattctattttgatattttgttttttatggcgggggacttggtgaagtaaatttgctttatgaagaatttcaagaatagcctacctttcgaggtcaactggtttgcaatgacgaataaatgtgcattgctaatcaaagatggtaaatctccctccttaagaggggatgctggtcatacac
tctgtttgtcaaagaattgtgaagatcatataatatgctagctgatatatcaatgacgattgttaggatatggtgaatcatgcttgtattgtcattaagcctcccatcaaatatacttgtctttcatttaaaacttttatatatttatttatttacttataattattctatcaatcacctaactgttattattgttattt
ctattggatctcacgataaataaaggacaacatggagcaagcttgagtagtgcattgcattactattctattattacatgaagaggaatctccgtggaaagaagcttcatatagTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCT
TTCTGCAGAGATTGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCC
Intron 8 GTTGATTGTC ... ACTTGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.84 | 41 | 15.5 | 8 |
| A2 | 37.91 | 37 | 25.5 | 11 |
| A3 | 32.02 | 24 | 15 | 12 |
| A4 | 34.36 | 32 | 20 | 5 |
| A5 | 45.59 | 10 | 8.5 | 3 |
| A6 | 17.95 | 65 | 16 | 7 |
| A7 | 21.66 | 103 | 35 | 8 |
| A8 | 24.33 | 98 | 37.5 | 14 |
| A9 | 23.34 | 116 | 40.5 | 6 |
| A10 | 26.32 | 61 | 28.5 | 7 |
>TRINITY_DN106859_c0_g2_i13 from sample A3 / Example spliced isoformGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTACTTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAG
CTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGGATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAG
AAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAGTCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCA
AAGGAATTTGAGCAGAGCCAGTTTTACCATTATTGCCAATTTTGTAGGAAATGATAACAAATGAATCTCTTCACAATTTCAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAACCACATTTCT
CTCAAGGGATGTTCAACTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGGCTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATT
GCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTACTTTTTACGACAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTT
GGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAGATCGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCCGAATGCTTATTGCTAGGTTATTTGCATCAGTGGCAGGTC
ATTGAATAACAACGATTTTTGGAGTTTATGAACATCAGCTGTGCCTGATGAAATTCATGAGCTGTATCTGCTCCTGTATTGTCTGCAGAGCGTTTATTGGAGCTCTTTGTAGACCTATTAAGATTATTTTTACAGTGCGGCAATTTTTAATGGAAAAACAAAAATGAGTTTTAAACTTCTGTATCAAAGTGATTATAGCA
TACATGCTTTCTACCTGAATAAAAGTCATTGCTTTTTTGAAAGTTTCATGTACTGTACTTGGAAGATATCTTCAGCATATTTGATATTGAAATATGTATTCTTTCTGGCTGGACTTTGAAAACCACTACAAGGAGAAAAAC
>TRINITY_DN106859_c0_g2_i4 from sample A3 / Example unspliced isoform:CAGAAGTCTTCTCTCAGCCATAGGCAATTCCTTGCTCCTTGTCATGTTTTCAAAATCTGTTTTTTTTTGTTAGAGGAGGAAATTCTTTCTTTCTCACAGGTTTTCTTGGAACTTTCTAGCAGTATTTTTGAGTTGCATATTCTTGTTTTCTCAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAGTCAACAGATATA
ATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGgttgattgtcaggatcatggttcatattttctaatttatttgtttatttattctcaagctgaaattgatctcatgctaggagattaactatttttttggaaatgtaaacttggacagGAATTTGAGCAGAGCCAGTTTTACCATTA
TTGCCAATTTTGTAGGAAATGATAACAAATGAATCTCTTCACAATTTCAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAACCACATTTCTCTCAAGGGATGTTCAACTTTGATTACAAGGGT
AAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGA
Intron 9 GTATCATTTC ... ATAAATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.68 | 88 | 74 | 8 |
| A2 | 42.15 | 70 | 51 | 16 |
| A3 | 48.28 | 60 | 56 | 7 |
| A4 | 48.39 | 48 | 45 | 12 |
| A5 | 47.06 | 36 | 32 | 4 |
| A6 | 47.14 | 120 | 107 | 9 |
| A7 | 47.12 | 220 | 196 | 17 |
| A8 | 44.66 | 171 | 138 | 26 |
| A9 | 48.15 | 168 | 156 | 18 |
| A10 | 46.54 | 139 | 121 | 7 |
>TRINITY_DN42674_c0_g3_i1 from sample A9 / Example spliced isoformCCTGCTTAAACCCATACTGACCCATGGTTAAAGTGAAACCCCAGCCCTGGTTGAGGGATACGCGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTAC
TTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAGCTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGG
ATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAGAAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAG
TCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGGCTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAGCCACATTTCTCTCAAGGGATGTTCAA
CTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGGCTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATTGCAACAGGCCAAATTG
CAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTACTTTTTACGACAGGACAACATGGAGCAAGCTTGAGTAGTGCATTGCATTACTATTCTATTATTACATGAAGAGGAATCT
CCGTGGAAAGAAGCTTCATATAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCTTTCTGCAGAGATTGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTT
TGATTATTAACTTGTGATTGTGATAGTTTTCTCC
>TRINITY_DN42674_c0_g3_i2 from sample A9 / Example unspliced isoform:CCTGCTTAAACCCATACTGACCCATGGTTAAAGTGAAACCCCAGCCCTGGTTGAGGGATACGCGTCTTTTGTTTCGTTTAGCGATGAAAGAAAGAAAGGGAGGGCTGGCAGGTAGCAGTGATCCAAGGGAAGGGAAAGCCTAAGCAAGTCCAGGGATGGGAACGCCTGTGTTTGTCATTCTCCTGCTTTGAAAAAGCTAC
TTTCCAGCTGATCCCAACATCCATCCATTTCTGGATATTGGGTGCATAGTTAGTTTATGTTAGCTGGTTTTTATACTTTTGGCAAATGGGTGCTTCAGTAAGCTACGCTGCTGGTCCTCCTCCTCCGCTCCCTCAGTCGGCTTCTCCTCCTCCTCCTCCGTCACCTCACCCATTGGGGGATCCTCCAAATAAAGTAGAGG
ATGAGAAGAAGGGCTCAGATGAGGTGGATTGGCTGAATCTCCCCTGCCCTGTTGCTTTTGAAGAAGTTCAGCGCGAAGTTATGATGTCACTGAAGCCTGAACTTTTTGAGGGATTGCGGTTTGACTTCACAAAGCCTCTCAATCAGAAGTCTTCTCTCAGCCATAGTGTTTTCATGGGCTCTGTGGAAGTTCCTTCACAG
TCAACAGATATAATCAAGGTTCCTAGTGCACATTATGAGTTCGGTGCAAACTTCTTGGATCCAAAGGAATTTGAGCAGAGCCAGTTTTACCATTATTGCCAATTTTGTAGGAAATGATAACAAATGAATCTCTTCACAATTTCAGCTAATGCTTGTGGGACGGATACTCACTGACGGGAGGTTGAATGCAAGAGTTAAGG
CTGATTTGACTGATAATCTAACTCTCAAAATAAATGCACAGATTACCAATGAGCCACATTTCTCTCAAGGGATGTTCAACTTTGATTACAAGGGTAAAGATTTCAGAAGCCAAATTCAACTTGGCAACAATGCTTTCTATGGTGGAAATTATATCCAGAGTGTCTCTCCACACTTGGCTCTTGGTGGTGAAATGTTTTGG
CTTGGCCATCAAAGGAAGTCTGGAATTGGTTTTGCTGCTCGATATAACGCAGATAAGATGATTGCAACAGGCCAAATTGCAAGCACAGGAATATTGGCTTTGAGTTATGTGCAGAGAATATCTGAGAAGGTCTCACTGGCGTCTGAGTTCATGTACAATCATACAACAAGAGATGCAACTACTAGTTTTGGTTATGATTA
CTTTTTACGACAGgtatcatttcattagcttctcacaatgtttttcatggttccaaataggactttcgatttttcttttggtgtagctttccacatatgaagatttcaacttcagcgatgtatttaaagcacacaaatagctgtgtgaatcttccctttgtggggcattgatgaatttcattatgagcttggtggaaaca
ggtaatttgttgtgttttcagattctattttgatattttgttttttatggcgggggacttggtgaagtaaatttgctttatgaagaatttcaagaatagcctacctttcgaggtcaactggtttgcaatgacgaataaatgtgcattgctaatcaaagatggtaaatctccctccttaagaggggatgctggtcatacac
tctgtttgtcaaagaattgtgaagatcatataatatgctagctgatatatcaatgacgattgttaggatatggtgaatcatgcttgtattgtcattaagcctcccatcaaatatacttgtctttcatttaaaacttttatatatttatttatttacttataattattctatcaatcacctaactgttattattgttattt
ctattggatctcacgataaataaagGACAACATGGAGCAAGCTTGAGTAGTGCATTGCATTACTATTCTATTATTACATGAAGAGGAATCTCCGTGGAAAGAAGCTTCATATAGTGTCGCCTCCGGGGAAGGCTTGATTCAAATGGTTGTGTTGCTGCTTATTTGGAAGAAAGATTGAATATGGGAGTCAATTTTGTTCT
TTCTGCAGAGATTGATCACTGGAAGAAGGATTACAAATTTGGATTTGGGATGACTGTTGGAGAGCTGTAGTCTTGGTCCGCATGTCAATTTTGATTATTAACTTGTGATTGTGATAGTTTTCTCC