NA ----> NA
Intron 1 GTAAGCCTGT ... AGTATTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.22 | 26 | 1 | 19 |
| A2 | 36.66 | 7 | 0 | 4 |
| A3 | 45.36 | 26.5 | 4 | 22 |
| A4 | 45.3 | 14.5 | 1 | 12 |
| A5 | 51.66 | 7.5 | 2 | 8 |
| A6 | 45.22 | 117.5 | 1 | 97 |
| A7 | 46.3 | 83.5 | 0 | 72 |
| A8 | 42.86 | 112 | 0 | 84 |
| A9 | 46.59 | 74.5 | 0 | 65 |
| A10 | 45.32 | 55.5 | 0 | 46 |
>TRINITY_DN112778_c0_g1_i9 from sample A3 / Example spliced isoformGTTGTTCGAAATATCTTCCCGTCAGCAATTTTGTCTGTCAAGATGTCTGAAAATTTGAATCGGAGTATTGGAGACAATACGGAGTTCTGGTCGAGTTCGGTTTGATTTCTGTAGAAAGTCGTGTTGGCCCTGTTGTGTGGATAAGAGTTGCTTTCGTGAGATTTACAAGGTTTTGTGTTATATTCCCAATGGCTATTGTT
AAGAGAGGATATAGGGTTTCAGGGGTTAGCAGCCAATTCCAATCTCAGGCACCGTGCAATTCTTCCATTTATGACGACGGGCCCAGGGGGAAGCACAGTCGGCCGTATCACGACGACGACGACGACGACGACGATGCAGACTCCGAGGCGGCGTCGGAGTCGTCGGATGGTTCCGACGTTGGAGAGAAAGGCACAGAATT
GTGCCGTGTTGGGGAGCAGAATTCTAATATCCCTTATGAGCTTTTTGACCTGCCTGACTTGAGGCCTGTATTGTCCCTTGATACATGGAATCACTGCCTTACGGATGAAGAGCGATTCGGTCTATCAGCTTATCTTCCCGATGCTGACCAGCAGACATTCATGCATACGTTGAAGGAATTGCTGGCTGGAGAGAATTTCC
ACTTTGGCAGCCCTTTGGTTGAACTTTTTGATATGTTGAAAGGAGGTCTTTGTCAGCCGCATGTTGCTCGGTATCGGGAAGGTCTGAAGTATTTGGAGAGGAAAGAGCATTATCACTTTTTAAGAACATATCAGGATAGCATGGTCAGTAATCTCCTTGAAATGAGGGAAACCTGGGAACGCTGCAGACACCTAAGTATT
GATGATAGGCTTAGTATTTGGAATTTGAGGAAATATAGGAAGGCTTTGGTTCAAACTGAACCGCAGGCTTTGCCACCAAGGCTTTCGCTTTCAGAGCAAAAGCACAAGTTCAAGCATTTACGAAAGGGAAAAATGGGACCACTAACACGCTCGATCAAAATGCCCAAGCTTCCTAGGGATGAAAACTTGTTTGAAGTAGT
TGAGCCTCTTCCAAAAGAAAAGGCCTTGACTAACAAACTTGATGGCAGGTATTTATTGGCAGGAAAGGTACACGCGGAGACTTATTTGGAGGTCCACCGCTCTGGAACATTGCAATCAAAAGAGACTGAAAAAATTGGAAAACAATTTCCGAAAGGAATGCTAAAACTAGCAAAAAAATGTGTTATGACAAAGCATGGGC
GGACTGGAATGCACCCTGAAATCAGTCAACAGGCACAATTTCCAGAAATGCAGGATTTTGGAACTAAATATGAACCATTGTCCTTGCTTCCTCCTGTTAACAAATGGGAGGCTGATGACTTTGTTGGAGAGACATCGTTTACGATGCGGAAGACAAGAAGTAGGACCAAAATTAACAGCTCAGGAACATCTTTGAGTCAT
GAAAAGGGACACCAATCTTGGAATTATTTGAATAGCGATGCAGGTCAAGAGAGAAGTAGCTCACTGCATGGCAGGAAGTTGGGAAGGATAAAGGAGCAAGAAATGTCTAACAGGATAGGTGTTCAGGTCCCTTTAAAGTTCAGCAAAAACATTGGACGGTTCAAGGAAGAAAGCAATCTTGCAGGAGGGAGGGCAATTTT
TGAAGATTCTGAAAAAAGAGGAGAAAGGGCAAAAGAATTGCAAGAGGGCACAAGAAAGCGCCCACAAGAACTATCAAAGGAAAAAGTGAATATGATATCTTCAAAAAATTCAAGGAAATATCCCCAAGAGAGAGTCATGTTTGATCTTTATTCAGATGCTGAGGAGCAAGGGCAAAACTCAGAGAAAATGAAAAGAAATC
TTCTTAAGCATCAGAAAAGACCAACTGAACAGTACAGAGTACCAGTTGGTCATGATTATGCTTGGGACAAGCAACAGTCCTTGCCATTTCTGCTAAAACAAAATTGTCACAAAGAGCTGGACATGAAACAACCAGAACCATGCAAAGAGAAGAAAAGGAAAACTGACTATATTAAAAACTTGGAGCAACTTAAAAAGAAG
AATGGAGCAATCAATCAATCATCACAAGATCTGTTGAGGATCTCAGCAAAGAAAAATAAATCAATTGAACAGTCCTCGGGAGAGCACCAGGTAAAGTGCCTGGAAGTGCAGTCAGCACTTGCAGAGAATAGAAGATATGATTTGGGTATTAGTTTGTCTTTGGATAACTCAAGAAAATCTGATGAAGGGAAGAAAAAGAA
AAGAAAGCAAAGACAAATTGATGATGAACAGCAAGGATTAATAGGTTCAGACAGCACCAAAGAGCATATGGAGAATCTAAAAAGATTTAAAAGGAAAATCAAGGACTCAGAGAAAAGTGAGTCACATGAAATTCTTCTATCTCCAACAGAAGACGATGAGGATGTTACTCAAATTGGTGATACAAAACTGGTTTCAAGCA
TTCATAATGATGCTGAAATGAGTTTATGGCTGCAGTCAGGTGAAGATACATTGCTGCAGAAAAGACCTAAGATTGACTTGGAAGAGGATGGAGAAACAGTTGTTGGGGAGGTGTCAAATAGATCACTTGGCAATTCACAGTATGGTTTAGATGAACAGACAGAAAAAGAAAAGCCACTAAAGAAAATGGGGAAGAAGATG
TCAAAAGCAGATGCTATTGTCCTTACTGGAGTGAAAGAAATGAATGGGCTGCATATTAACCCTAGGCTTAGTCCATGCCAGGAATTGTTTGGAGCAAAGCCATTGAAGAGAGGAACTAAGAAGGTAGAGGATGCCAAAATCCTTGACGGGATGGCAGAGTCTAATGGAATTAAAGGTAGTGCTCAGCCTCTTATGTACTT
GAATGGAGATGAATGCAAGCCTGGAAATAGAAAAACAAGGAAAGTAACAGCTGATGCTGAAATCCTTACTAGGGTGTCAGAGCTAAATGCTTTGCATAATAATGATCAGCCTAACTGCCAACAGACAGATGAAAGGAAGCCTGGGAAAAAAGTAAAACAAGCTAGGAAGGAGGATAATATTGTATCTTTAGCGACCTTGC
CTTCCAAACAGGCTATTGTAGCCGATAAAGTAACTACAGACACAAAACCCTCAAAGAAGCTCCCTCCTTTGGTTATACCTCCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTAGAACAGCTATGCTTTCTCCCTCTGTAGAAGATATTTCAGAGGTGGTGAATCATTCTGAAAAAAGTGAC
GGGGAGAGAGAGAGCTCAAACCAGGAGGGTCAGTTCACATTTTCTTCTGATGGGAAGGCTGAGGATCAAAATTGTGTGTTCTTAAACCACCGTCTTGATGGCCATCCTGACATGTGTAAAACAGGTACAGATCCCAGTTATCTGGAACGTGAAAGACAGGTCAGTCCATCCTCTATACCTTTCCAAGAAATTTGCAAGCG
GGTGCAGTTGAATCCAGGGGATCCTTGCATCCTTGAAACACCAGAGCCACTCCAGGATCTAGTTCGTGGAGCATTGAAAATTTTTACATCAAAGACAGCACCTCCAGGAGTCAAGGGTTGGAAGCCCCTTGCAGTCTATGATAAATCTACCAGGAGCTGGTCATGGATTGGTCCAGTGCCCTCTAACTCCCTACGGCATG
AGTCCATGGAAGTCCAGACTTCTCCAGAAGCATGGGGCATTTCTCAGAAGATGCTTTTAAAATTGGTGGAAGCATTTGCAAATTGGCTGAAAAATGGGCAAGAAACTCTTCAGCAGATTGTTCTTTTGCCTTCCCCACCACCACCGTCAATGCCAACATGTATAGATGAAAAGGAAAGGTTTCGGGACTTGAGAGCTCAG
AAAAGTTCAATCACTATCACCCCAAGTTCTGCTGACATGAGAACTTATTTCCGTAGAGAAGAAATTCTTCGATACTCTGTACCTGACAGGGCCTTTTCTTACACTGCTGTAGATGGGCGTAAGGCAGTTGTTGCTCCACTGAGGAGATGTGGTGGAAAACCCACCTCAAAGGCTCGAGACCATTTTATGCTGAAGCCTGA
TAGGCCTCCTCATGTGACAATACTATGTCTTGTGAGAGATGCAGCTGCTAGATTGCCTGGGAGCATTGGCACAAGGGCAGATGTTTGTACACTTATTAGGGATTCTCAGTACATTGTAGAAGACGTATCAGATGCACAAGTTAATCAGGTTGTTAGTGGAGCACTGGATCGCTTGCATTATGAGCGTGATCCTTGTGTGC
AATTTGACGGAGATAGAAAATTGTGGGTTTACTTACACTCTGAAAGAGCTGAAGAAGATTTTGAGGATGATGGGACATCTTCTACAAAGAGATGGAAAAGGCAAAAGAAGGACAATGTTGAGAACTCTGACATTGGGCCTTGTAATGATGGTACTTATCATGGCATGGATGATCAGGATGCTTGTGGTTCAGGCCTTGGG
TTTGATTTCTGCTCTCCTGATTATAATGGTGACTCATCATCTATATATTCTGGTGGCAAGGCAGAACTTGTGTACAATAAGAATGGTTCTTTGACTAGTCCTCGTGTTCTTAGAAGTGGTTTCAATGGATCAAATATGGATGATGGTATGGTACCATTTATAGATCTCCCTCCATCCATACATTCTATTCCTGGTAGTAT
GCATGAAAGTCATCCGATGGGGTGGGAGGTCCTTGGATTAAATCCCTTGGGTCATGGATCAAATCTTAAATCACAAGAGCACATATCCAATAAGGAATTTGATAATGACACTTTTAGTAGAGAGAGACCTATTGAACTCTTAAGTGCCAGCCTGCTATGAGGAGTCTAATGATTACTTCTATCCAAGATGCCCAAGGAAG
AAGACTCTGGGCAATTATGTGAAAGCTGCTGTGATTGTGTGGAGGGGGACGGTGTCATATGGGGGCAGCCACATGGTATATGGAAAGAATCTGACAATCTATTCTAATGATTTGGCGGGGTCTCTCAATTTGACAACAGCATTCTATTACTGTTCTCGAAGTATTCCAGTTGTTGCACCTATCTACATCGTTGGGGTGAA
AGCTGTTGGGGGCAAACACTGGCTTCCTTGTATATTCTTGTTCTTCATTACACATAAAAGGACGAGTTTGCTTTGTATAGAGGAGTTGGAGAGCTAATTTATGTTAGGCACACATTTAATTCCTATTCTATTAAGTTCCTGTAACATACTTCCTTTTTAAGGCTTGAAGAATGGACAGGTGTAAAATAATGGATGGGAGG
TGGTGAAGGACAATCTTGCCTATGATGAAAATATTGAGTCAATCTCATATCTATTGCCAACCATGAATTGTATTTATGAGGTGCTTATAGTCATTAATATTTTTTGACCTCCATAATTTTCCATTATAATATCAAAATTAAGTGCACAAGTTTGATGTTTGTCCCTTCTATTTTGCTTGAAAATTTTCAAGCACTCTTGT
CCATTTAGGTTAAATTGTTCATTGCTTATAGTGAC
>TRINITY_DN112778_c0_g1_i7 from sample A3 / Example unspliced isoform:GGGGCAGCCACATGGTATATGgtaagcctgttttcattaaaattttgacatgtgcttaccacagtattttgaagaggggcattattatatgttttatgaaatttatgtattttatagacatatatgtagtattaccttttaaaaaggtgggtattcaagttcaagggaagcacataatttaccttttcctaaccccatta
agttttaagagggagaggaattttgtttgagggggggcatttgtttagtccctggtgtatctttaacaagggtttcacggggcccctcacactaatgtgcctcgctcacacaccatgggtgtcttgacaaatatcagaaattgaagacagaatatgcccttcttctttcttgggttgatgaagaggacaatacaatcaag
gacttgcatgacctcaatcagtgccttgtttaagaagtcaccaagttatgtagtattcaagGAAAGAATCTGACAATCTATTCTAATGATTTGGCGGGGTCTCTCAATTTGACAACAGCATTCTATTACTGTTCTCGAAGTATTCCAGTTGTTGCACCTATCTACATCGTTGGGGTGAAAGCTGTTGGGGGCAAACACTG
GCTTCCTTGTATATTCTTGTTCTTCATTACACATAAAAGGACGAGTTTGCTTTGTATAGAGGAGTTGGAGAGCTAATTTATGTTAGGCACACATTTAATTCCTATTCTATTAAGTTCCTGTAACATACTTCCTTTTTAAGGCTTGAAGAATGGACAGGTGTAAAATAATGGATGGGAGGTGGTGAAGGACAATCTTGCCT
ATGATGAAAATATTGAGTCAATCTCATATCTATTGCCAACCATGAATTGTATTTATGAGGTGCTTATAGTCATTAATATTTTTTGACCTCCATAATTTTCCATTATAATATCAAAATTAAGTGCACAAGTTTGATGTTTGTCCCTTCTATTTTGCTTGAAAATTTTCAAGCACTCTTGTCCATTTAGGTTAAATTGTTCA
TTGCTTATAGTGAC
Intron 2 GTATGTTGAA ... AGGGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.92 | 50 | 30 | 54 |
| A2 | 54.65 | 39 | 21 | 47 |
| A3 | 68.75 | 35 | 19 | 77 |
| A4 | 64.71 | 42 | 11 | 77 |
| A5 | 79.31 | 6 | 6 | 23 |
| A6 | 60 | 4 | 0 | 6 |
| A7 | 100 | 0 | 0 | 1 |
| A8 | 75 | 1 | 0 | 3 |
| A9 | 63.64 | 4 | 3 | 7 |
| A10 | 70.83 | 7 | 4 | 17 |
>TRINITY_DN123232_c0_g1_i10 from sample A1 / Example spliced isoformAGAACGCCGAGAGGAACCAAGATGCTGGCATTTACTGCGACGGTAACAAGCTAAAGGGACAAAAGAACACATATCTTTGTAGGAAAATTTAACGGCAGGGTAACATTTCATTGAACGAACTCACTCCGTTAAGGATGATGAACATCTACTGCTAAAAGCATAGGAGAGAGAAGATGTGATGGATGATTATAGCATTAAAT
GTTAACATTCCATGCTAAGGTTCGGCTCACCTCTCTCTCACCATGCGATTTGGATTTGGAATTGGAATTGGGCGTCCTCAACGGTTTTCATGGTGATTAGCTGCGTTATTTTGGGCACAACCAGTCCTTAATTTTTAGCGCCCACGGTTTTATTCTCTTTGCATTTTCAAGCGTTTCGATTTTTCAGTTTGTTCCTTAAT
TTCCCCGAAGTCGGCTTCTTCTTCGTTCCTTTATTTCTTCCGGAACGATACAGAATCTAGGGCTCTCTCTCGGACCTATCATGAACTCCAGCAGGTCGTTTCGGGGTCGAAGGCAGGGCTCAATTCGTGGTTTGAAGGTATTCAAATGCTCTTTTTTCGCGGAAATTCACATCTAGTTTTACCGGATTCTTCAAAGTCAG
AATTATTCAACACAAGAAGGTCCCGCCGGAGAAAAAGGCAAAAACATTTCCGTGGGGTTAGCAGCCAATTCCAATCTCAGGCACCGTGCAATTCTTCCATTTATGACGACGGGCCCAGGGGGAAGCACAGTCGGCCGTATCACGACGACGACGACGACGACGACGATGCAGACTCCGAGGCGGCGTCGGAGTCGTCGGAT
GGTTCCGACGTTGGAGAGAAAGGCACAGAATTGTGCCGTGTTGGGGAGCAGAATTCTAATATCCCTTATGAGCTTTTTGACCTGCCTGACTTGAGGCCTGTATTGTCCCTTGATACATGGAATCACTGCCTTACGGATGAAGAGCGATTCGGTCTATCAGCTTATCTTCCCGATGCTGACCAGCAGACATTCATGCATAC
GTTGAAGGAATTGCTGGCTGGAGAGAATTTCCACTTTGGCAGCCCTTTGGTTGAACTTTTTGATATGTTGAAAGGAGGTCTTTGTCAGCCGCATGTTGCTCGGTATCGGGAAGGTCTGAAGTATTTGGAGAGGAAAGAGCATTATCACTTTTTAAGAACATATCAGGATAGCATGGTCAGTAATCTCCTTGAAATGAGGG
AAACCTGGGAACGCTGCAGACACCTAAGTATTGATGATAGGCTTAGTATTTGGAATTTGAGGAAATATAGGAAGGCTTTGGTTCAAACTGAACCGCAGGCTTTGCCACCAAGGCTTTCGCTTTCAGAGCAAAAGCACAAGTTCAAGCATTTACGAAAGGGAAAAATGGGACCACTAACACGCTCGATCAAAATGCCCAAG
CTTCCTAGGGATGAAAACTTGTTTGAAGTAGTTGAGCCTCTTCCAAAAGAAAAGGCCTTGACTAACAAACTTGATGGCAGGTATTTATTGGCAGGAAAGGTACACGCGGAGACTTATTTGGAGGTCCACCGCTCTGGAACATTGCAATCAAAAGAGACTGAAAAAATTGGAAAACAATTTCCGAAAGGAATGCTAAAACT
AGCAAAAAAATGTGTTATGACAAAGCATGGGCGGACTGGAATGCACCCTGAAATCAGTCAACAGGCACAATTTCCAGAAATGCAGGATTTTGGAACTAAATATGAACCATTGTCCTTGCTTCCTCCTGTTAACAAATGGGAGGCTGATGACTTTGTTGGAGAGACATCGTTTACGATGCGGAAGACAAGAAGTAGGACCA
AAATTAACAGCTCAGGAACATCTTTGAGTCATGAAAAGGGACACCAATCTTGGAATTATTTGAATAGCGATGCAGGTCAAGAGAGAAGTAGCTCACTGCATGGCAGGAAGTTGGGAAGGATAAAGGAGCAAGAAATGTCTAACAGGATAGGTGTTCAGGTCCCTTTAAAGTTCAGCAAAAACATTGGACGGTTCAAGGAA
GAAAGCAATCTTGCAGGAGGGAGGGCAATTTTTGAAGATTCTGAAAAAAGAGGAGAAAGGGCAAAAGAATTGCAAGAGGGCACAAGAAAGCGCCCACAAGAACTATCAAAGGAAAAAGTGAATATGATATCTTCAAAAAATTCAAGGAAATATCCCCAAGAGAGAGTCATGTTTGATCTTTATTCAGATGCTGAGGAGCA
AGGGCAAAACTCAGAGAAAATGAAAAGAAATCTTCTTAAGCATCAGAAAAGACCAACTGAACAGTACAGAGTACCAGTTGGTCATGATTATGCTTGGGACAAGCAACAGTCCTTGCCATTTCTGCTAAAACAAAATTGTCACAAAGAGCTGGACATGAAACAACCAGAACCATGCAAAGAGAAGAAAAGGAAAACTGACT
ATATTAAAAACTTGGAGCAACTTAAAAAGAAGAATGGAGCAATCAATCAATCATCACAAGATCTGTTGAGGATCTCAGCAAAGAAAAATAAATCAATTGAACAGTCCTCGGGAGAGCACCAGGTAAAGTGCCTGGAAGTGCAGTCAGCACTTGCAGAGAATAGAAGATATGATTTGGGTATTAGTTTGTCTTTGGATAAC
TCAAGAAAATCTGATGAAGGGAAGAAAAAGAAAAGAAAGCAAAGACAAATTGATGATGAACAGCAAGGATTAATAGGTTCAGACAGCACCAAAGAGCATATGGAGAATCTAAAAAGATTTAAAAGGAAAATCAAGGACTCAGAGAAAAGTGAGTCACATGAAATTCTTCTATCTCCAACAGAAGACGATGAGGATGTTAC
TCAAATTGGTGATACAAAACTGGTTTCAAGCATTCATAATGATGCTGAAATGAGTTTATGGCTGCAGTCAGGTGAAGATACATTGCTGCAGAAAAGACCTAAGATTGACTTGGAAGAGGATGGAGAAACAGTTGTTGGGGAGGTGTCAAATAGATCACTTGGCAATTCACAGTATGGTTTAGATGAACAGACAGAAAAAG
AAAAGCCACTAAAGAAAATGGGGAAGAAGATGTCAAAAGCAGATGCTATTGTCCTTACTGGAGTGAAAGAAATGAATGGGCTGCATATTAACCCTAGGCTTAGTCCATGCCAGGAATTGTTTGGAGCAAAGCCATTGAAGAGAGGAACTAAGAAGGTAGAGGATGCCAAAATCCTTGACGGGATGGCAGAGTCTAATGGA
ATTAAAGGTAGTGCTCAGCCTCTTATGTACTTGAATGGAGATGAATGCAAGCCTGGAAATAGAAAAACAAGGAAAGTAACAGCTGATGCTGAAATCCTTACTAGGGTGTCAGAGCTAAATGCTTTGCATAATAATGATCAGCCTAACTGCCAACAGACAGATGAAAGGAAGCCTGGGAAAAAAGTAAAACAAGCTAGGAA
GGAGGATAATATTGTATCTTTAGCGACCTTGCCTTCCAAACAGGCTATTGTAGCCGATAAAGTAACTACAGACACAAAACCCTCAAAGAAGCTCCCTCCTTTGGTTATACCTCCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTAGAACAGCTATGCTTTCTCCCTCCTTTGGTTATACCT
CCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTAGAACAGCTATGCTTTCTCCCTCTGTAGAAGATATTTCAGAGGTGGTGAATCATTCTGAAAAAAGTGACGGGGAGAGAGAGAGCTCAAACCAGGAGGGTCAGTTCACATTTTCTTCTGATGGGAAGGCTGAGGATCAAAATTGTGTGTT
CTTAAACCACCGTCTTGATGGCCATCCTGACATGTGTAAAACAGGTACAGATCCCAGTTATCTGGAACGTGAAAGACAGGTCAGTCCATCCTCTATACCTTTCCAAGAAATTTGCAAGCGGGTGCAGTTGAATCCAGGGGATCCTTGCATCCTTGAAACACCAGAGCCACTCCAGGATCTAGTTCGTGGAGCATTGAAAA
TTTTTACATCAAAGACAGCACCTCCAGGAGTCAAGGGTTGGAAGCCCCTTGCAGTCTATGATAAATCTACCAGGAGCTGGTCATGGATTGGTCCAGTGCCCTCTAACTCCCTACGGCATGAGTCCATGGAAGTCCAGACTTCTCCAGAAGCATGGGGCATTTCTCAGAAGATGCTTTTAAAATTGGTGGAAGCATTTGCA
AATTGGCTGAAAAATGGGCAAGAAACTCTTCAGCAGATTGTTCTTTTGCCTTCCCCACCACCACCGTCAATGCCAACATGTATAGATGAAAAGGAAAGGTTTCGGGACTTGAGAGCTCAGAAAAGTTCAATCACTATCACCCCAAGTTCTGCTGACATGAGAACTTATTTCCGTAGAGAAGAAATTCTTCGATACTCTGT
ACCTGACAGGGCCTTTTCTTACACTGCTGTAGATGGGCGTAAGGCAGTTGTTGCTCCACTGAGGAGATGTGGTGGAAAACCCACCTCAAAGGCTCGAGACCATTTTATGCTGAAGCCTGATAGGCCTCCTCATGTGACAATACTATGTCTTGTGAGAGATGCAGCTGCTAGATTGCCTGGGAGCATTGGCACAAGGGCAG
ATGTTTGTACACTTATTAGGGATTCTCAGTACATTGTAGAAGACGTATCAGATGCACAAGTTAATCAGGTTGTTAGTGGAGCACTGGATCGCTTGCATTATGAGCGTGATCCTTGTGTGCAATTTGACGGAGATAGAAAATTGTGGGTTTACTTACACTCTGAAAGAGCTGAAGAAGATTTTGAGGATGATGGGACATCT
TCTACAAAGAGATGGAAAAGGCAAAAGAAGGACAATGTTGAGAACTCTGACATTGGGCCTTGTAATGATGGTACTTATCATGGCATGGATGATCAGGATGCTTGTGGTTCAGGCCTTGGGTTTGATTTCTGCTCTCCTGATTATAATGGTGACTCATCATCTATATATTCTGGTGGCAAGGCAGAACTTGTGTACAATAA
GAATGGTTCTTTGACTAGTCCTCGTGTTCTTAGAAGTGGTTTCAATGGATCAAATATGGATGATGGTATGGTACCATTTATAGATCTCCCTCCATCCATACATTCTATTCCTGGTAGTATGCATGAAAGTCATCCGATGGGGTGGGAGGTCCTTGGATTAAATCCCTTGGGTCATGGATCAAATCTTAAATCACAAGAGC
ACATATCCAATAAGGAATTTGATAATGACACTTTTAGTAGAGAGAGACCTATTGAACTCTTAAGTGCCAGCCTGCTATGAGGAGTCTAATGATTACTTCTATCCAAGATGCCCAAG
>TRINITY_DN123232_c0_g1_i7 from sample A1 / Example unspliced isoform:AGAACGCCGAGAGGAACCAAGATGCTGGCATTTACTGCGACGGTAACAAGCTAAAGGGACAAAAGAACACATATCTTTGTAGGAAAATTTAACGGCAGGGTAACATTTCATTGAACGAACTCACTCCGTTAAGGATGATGAACATCTACTGCTAAAAGCATAGGAGAGAGAAGATGTGATGGATGATTATAGCATTAAAT
GTTAACATTCCATGCTAAGGTTCGGCTCACCTCTCTCTCACCATGCGATTTGGATTTGGAATTGGAATTGGGCGTCCTCAACGGTTTTCATGGTGATTAGCTGCGTTATTTTGGGCACAACCAGTCCTTAATTTTTAGCGCCCACGGTTTTATTCTCTTTGCATTTTCAAGCGTTTCGATTTTTCAGTTTGTTCCTTAAT
TTCCCCGAAGTCGGCTTCTTCTTCGTTCCTTTATTTCTTCCGGAACGATACAGAATCTAGGGCTCTCTCTCGGACCTATCATGAACTCCAGCAGGTCGTTTCGGGGTCGAAGGCAGGGCTCAATTCGTGGTTTGAAGGTATTCAAATGCTCTTTTTTCGCGGAAATTCACATCTAGTTTTACCGGATTCTTCAAAGTCAG
AATTATTCAACACAAGAAGGTCCCGCCGGAGAAAAAGGCAAAAACATTTCCGTGgtatgttgaatttcttcttttatgcttttaatttgttcgaattttgctagaatgtatcgtttgaacaattctttaggggttatcccagattattttactgtattttcttttttctttttccttgaagttgttcgaaatatcttccc
gtcagcaattttgtctgtcaagatgtctgaaaatttgaatcggagtattggagacaatacggagttctggtcgagttcggtttgatttctgtagaaagtcgtgttggccctgttgtgtggataagagttgctttcgtgagatttacaaggttttgtgttatattcccaatggctattgttaagagaggatatagggtttc
agGGGTTAGCAGCCAATTCCAATCTCAGGCACCGTGCAATTCTTCCATTTATGACGACGGGCCCAGGGGGAAGCACAGTCGGCCGTATCACGACGACGACGACGACGACGACGATGCAGACTCCGAGGCGGCGTCGGAGTCGTCGGATGGTTCCGACGTTGGAGAGAAAGGCACAGAATTGTGCCGTGTTGGGGAGCAGA
ATTCTAATATCCCTTATGAGCTTTTTGACCTGCCTGACTTGAGGCCTGTATTGTCCCTTGATACATGGAATCACTGCCTTACGGATGAAGAGCGATTCGGTCTATCAGCTTATCTTCCCGATGCTGACCAGCAGACATTCATGCATACGTTGAAGGAATTGCTGGCTGGAGAGAATTTCCACTTTGGCAGCCCTTTGGTT
GAACTTTTTGATATGTTGAAAGGAGGTCTTTGTCAGCCGCATGTTGCTCGGTATCGGGAAGGTCTGAAGTATTTGGAGAGGAAAGAGCATTATCACTTTTTAAGAACATATCAGGATAGCATGGTCAGTAATCTCCTTGAAATGAGGGAAACCTGGGAACGCTGCAGACACCTAAGTATTGATGATAGGCTTAGTATTTG
GAATTTGAGGAAATATAGGAAGGCTTTGGTTCAAACTGAACCGCAGGCTTTGCCACCAAGGCTTTCGCTTTCAGAGCAAAAGCACAAGTTCAAGCATTTACGAAAGGGAAAAATGGGACCACTAACACGCTCGATCAAAATGCCCAAGCTTCCTAGGGATGAAAACTTGTTTGAAGTAGTTGAGCCTCTTCCAAAAGAAA
AGGCCTTGACTAACAAACTTGATGGCAGGTATTTATTGGCAGGAAAGGTACACGCGGAGACTTATTTGGAGGTCCACCGCTCTGGAACATTGCAATCAAAAGAGACTGAAAAAATTGGAAAACAATTTCCGAAAGGAATGCTAAAACTAGCAAAAAAATGTGTTATGACAAAGCATGGGCGGACTGGAATGCACCCTGAA
ATCAGTCAACAGGCACAATTTCCAGAAATGCAGGATTTTGGAACTAAATATGAACCATTGTCCTTGCTTCCTCCTGTTAACAAATGGGAGGCTGATGACTTTGTTGGAGAGACATCGTTTACGATGCGGAAGACAAGAAGTAGGACCAAAATTAACAGCTCAGGAACATCTTTGAGTCATGAAAAGGGACACCAATCTTG
GAATTATTTGAATAGCGATGCAGGTCAAGAGAGAAGTAGCTCACTGCATGGCAGGAAGTTGGGAAGGATAAAGGAGCAAGAAATGTCTAACAGGATAGGTGTTCAGGTCCCTTTAAAGTTCAGCAAAAACATTGGACGGTTCAAGGAAGAAAGCAATCTTGCAGGAGGGAGGGCAATTTTTGAAGATTCTGAAAAAAGAG
GAGAAAGGGCAAAAGAATTGCAAGAGGGCACAAGAAAGCGCCCACAAGAACTATCAAAGGAAAAAGTGAATATGATATCTTCAAAAAATTCAAGGAAATATCCCCAAGAGAGAGTCATGTTTGATCTTTATTCAGATGCTGAGGAGCAAGGGCAAAACTCAGAGAAAATGAAAAGAAATCTTCTTAAGCATCAGAAAAGA
CCAACTGAACAGTACAGAGTACCAGTTGGTCATGATTATGCTTGGGACAAGCAACAGTCCTTGCCATTTCTGCTAAAACAAAATTGTCACAAAGAGCTGGACATGAAACAACCAGAACCATGCAAAGAGAAGAAAAGGAAAACTGACTATATTAAAAACTTGGAGCAACTTAAAAAGAAGAATGGAGCAATCAATCAATC
ATCACAAGATCTGTTGAGGATCTCAGCAAAGAAAAATAAATCAATTGAACAGTCCTCGGGAGAGCACCAGGTAAAGTGCCTGGAAGTGCAGTCAGCACTTGCAGAGAATAGAAGATATGATTTGGGTATTAGTTTGTCTTTGGATAACTCAAGAAAATCTGATGAAGGGAAGAAAAAGAAAAGAAAGCAAAGACAAATTG
ATGATGAACAGCAAGGATTAATAGGTTCAGACAGCACCAAAGAGCATATGGAGAATCTAAAAAGATTTAAAAGGAAAATCAAGGACTCAGAGAAAAGTGAGTCACATGAAATTCTTCTATCTCCAACAGAAGACGATGAGGATGTTACTCAAATTGGTGATACAAAACTGGTTTCAAGCATTCATAATGATGCTGAAATG
AGTTTATGGCTGCAGTCAGGTGAAGATACATTGCTGCAGAAAAGACCTAAGATTGACTTGGAAGAGGATGGAGAAACAGTTGTTGGGGAGGTGTCAAATAGATCACTTGGCAATTCACAGTATGGTTTAGATGAACAGACAGAAAAAGAAAAGCCACTAAAGAAAATGGGGAAGAAGATGTCAAAAGCAGATGCTATTGT
CCTTACTGGAGTGAAAGAAATGAATGGGCTGCATATTAACCCTAGGCTTAGTCCATGCCAGGAATTGTTTGGAGCAAAGCCATTGAAGAGAGGAACTAAGAAGGTAGAGGATGCCAAAATCCTTGACGGGATGGCAGAGTCTAATGGAATTAAAGGTAGTGCTCAGCCTCTTATGTACTTGAATGGAGATGAATGCAAGC
CTGGAAATAGAAAAACAAGGAAAGTAACAGCTGATGCTGAAATCCTTACTAGGGTGTCAGAGCTAAATGCTTTGCATAATAATGATCAGCCTAACTGCCAACAGACAGATGAAAGGAAGCCTGGGAAAAAAGTAAAACAAGCTAGGAAGGAGGATAATATTGTATCTTTAGCGACCTTGCCTTCCAAACAGGCTATTGTA
GCCGATAAAGTAACTACAGACACAAAACCCTCAAAGAAGCTCCCTCCTTTGGTTATACCTCCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTAGAACAGCTATGCTTTCTCCCTCCTTTGGTTATACCTCCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTA
GAACAGCTATGCTTTCTCCCTCTGTAGAAGATATTTCAGAGGTGGTGAATCATTCTGAAAAAAGTGACGGGGAGAGAGAGAGCTCAAACCAGGAGGGTCAGTTCACATTTTCTTCTGATGGGAAGGCTGAGGATCAAAATTGTGTGTTCTTAAACCACCGTCTTGATGGCCATCCTGACATGTGTAAAACAGGTACAGAT
CCCAGTTATCTGGAACGTGAAAGACAGGTCAGTCCATCCTCTATACCTTTCCAAGAAATTTGCAAGCGGGTGCAGTTGAATCCAGGGGATCCTTGCATCCTTGAAACACCAGAGCCACTCCAGGATCTAGTTCGTGGAGCATTGAAAATTTTTACATCAAAGACAGCACCTCCAGGAGTCAAGGGTTGGAAGCCCCTTGC
AGTCTATGATAAATCTACCAGGAGCTGGTCATGGATTGGTCCAGTGCCCTCTAACTCCCTACGGCATGAGTCCATGGAAGTCCAGACTTCTCCAGAAGCATGGGGCATTTCTCAGAAGATGCTTTTAAAATTGGTGGAAGCATTTGCAAATTGGCTGAAAAATGGGCAAGAAACTCTTCAGCAGATTGTTCTTTTGCCTT
CCCCACCACCACCGTCAATGCCAACATGTATAGATGAAAAGGAAAGGTTTCGGGACTTGAGAGCTCAGAAAAGTTCAATCACTATCACCCCAAGTTCTGCTGACATGAGAACTTATTTCCGTAGAGAAGAAATTCTTCGATACTCTGTACCTGACAGGGCCTTTTCTTACACTGCTGTAGATGGGCGTAAGGCAGTTGTT
GCTCCACTGAGGAGATGTGGTGGAAAACCCACCTCAAAGGCTCGAGACCATTTTATGCTGAAGCCTGATAGGCCTCCTCATGTGACAATACTATGTCTTGTGAGAGATGCAGCTGCTAGATTGCCTGGGAGCATTGGCACAAGGGCAGATGTTTGTACACTTATTAGGGATTCTCAGTACATTGTAGAAGACGTATCAGA
TGCACAAGTTAATCAGGTTGTTAGTGGAGCACTGGATCGCTTGCATTATGAGCGTGATCCTTGTGTGCAATTTGACGGAGATAGAAAATTGTGGGTTTACTTACACTCTGAAAGAGCTGAAGAAGATTTTGAGGATGATGGGACATCTTCTACAAAGAGATGGAAAAGGCAAAAGAAGGACAATGTTGAGAACTCTGACA
TTGGGCCTTGTAATGATGGTACTTATCATGGCATGGATGATCAGGATGCTTGTGGTTCAGGCCTTGGGTTTGATTTCTGCTCTCCTGATTATAATGGTGACTCATCATCTATATATTCTGGTGGCAAGGCAGAACTTGTGTACAATAAGAATGGTTCTTTGACTAGTCCTCGTGTTCTTAGAAGTGGTTTCAATGGATCA
AATATGGATGATGGTATGGTACCATTTATAGATCTCCCTCCATCCATACATTCTATTCCTGGTAGTATGCATGAAAGTCATCCGATGGGGTGGGAGGTCCTTGGATTAAATCCCTTGGGTCATGGATCAAATCTTAAATCACAAGAGCACATATCCAATAAGGAATTTGATAATGACACTTTTAGTAGAGAGAGACCTAT
TGAACTCTTAAGTGCCAGCCTGCTATGAGGAGTCTAATGATTACTTCTATCCAAGATGCCCAAGGAAAGAATCTGACAATCTATTCTAATGATTTGGCGGGGTCTCTCAATTTGACAACAGCATTCTATTACTGTTCTCGAAGTATTCCAGTTGTTGCACCTATCTACATCGTTGGGGTGAAAGCTGTTGGGGGCAAACA
CTGGCTTCCTTGTATATTCTTGTTCTTCATTACACATAAAAGGACGAGTTTGCTTTGTATAGAGGAGTTGGAGAGCTAATTTATGTTAGGCACACATTTAATTCCTATTCTATTAAGTTCCTGTAACATACTTCCTTTTTAAGGCTTGAAGAATGGACAGGTGTAAAATAATGGATGGGAGGTGGTGAAGGACAATCTTG
CCTATGATGAAAATATTGAGTCAATCTCATATCTATTGCCAACCATGAATTGTATTTATGAGGTGCTTATAGTCATTAATATTTTTTGACCTCCATAATTTTCCATTATAATATCAAAATTAAGTGCACAAGTTTGATGTTTGTCCCTTCTATTTTGCTTGAAAATTTTCAAGCACTCTTGTCCATTTAGGTTAAATTGT
TCATTGCTTATAGTTACAATCTTGAGCCCCA
Intron 3 GTATGTTGAA ... TTCCTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.85 | 51 | 30 | 27 |
| A2 | 30.34 | 31 | 21 | 6 |
| A3 | 26.67 | 44 | 19 | 13 |
| A4 | 28.12 | 23 | 11 | 7 |
| A5 | 24.32 | 14 | 6 | 3 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 0 | 3 | 0 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 33.33 | 3 | 3 | 0 |
| A10 | 33.33 | 6 | 4 | 2 |
>TRINITY_DN123232_c0_g1_i2 from sample A1 / Example spliced isoformAGAACGCCGAGAGGAACCAAGATGCTGGCATTTACTGCGACGGTAACAAGCTAAAGGGACAAAAGAACACATATCTTTGTAGGAAAATTTAACGGCAGGGTAACATTTCATTGAACGAACTCACTCCGTTAAGGATGATGAACATCTACTGCTAAAAGCATAGGAGAGAGAAGATGTGATGGATGATTATAGCATTAAAT
GTTAACATTCCATGCTAAGGTTCGGCTCACCTCTCTCTCACCATGCGATTTGGATTTGGAATTGGAATTGGGCGTCCTCAACGGTTTTCATGGTGATTAGCTGCGTTATTTTGGGCACAACCAGTCCTTAATTTTTAGCGCCCACGGTTTTATTCTCTTTGCATTTTCAAGCGTTTCGATTTTTCAGTTTGTTCCTTAAT
TTCCCCGAAGTCGGCTTCTTCTTCGTTCCTTTATTTCTTCCGGAACGATACAGAATCTAGGGCTCTCTCTCGGACCTATCATGAACTCCAGCAGGTCGTTTCGGGGTCGAAGGCAGGGCTCAATTCGTGGTTTGAAGGTATTCAAATGCTCTTTTTTCGCGGAAATTCACATCTAGTTTTACCGGATTCTTCAAAGTCAG
AATTATTCAACACAAGAAGGTCCCGCCGGAGAAAAAGGCAAAAACATTTCCGTGTTGTTCGAAATATCTTCCCGTCAGCAATTTTGTCTGTCAAGATGTCTGAAAATTTGAATCGGAGTATTGGAGACAATACGGAGTTCTGGTCGAGTTCGGTTTGATTTCTGTAGAAAGTCGTGTTGGCCCTGTTGTGTGGATAAGAG
TTGCTTTCGTGAGATTTACAAGGTTTTGTGTTATATTCCCAATGGCTATTGTTAAGAGAGGATATAGGGTTTCAGGGGTTAGCAGCCAATTCCAATCTCAGGCACCGTGCAATTCTTCCATTTATGACGACGGGCCCAGGGGGAAGCACAGTCGGCCGTATCACGACGACGACGACGACGACGACGATGCAGACTCCGAG
GCGGCGTCGGAGTCGTCGGATGGTTCCGACGTTGGAGAGAAAGGCACAGAATTGTGCCGTGTTGGGGAGCAGAATTCTAATATCCCTTATGAGCTTTTTGACCTGCCTGACTTGAGGCCTGTATTGTCCCTTGATACATGGAATCACTGCCTTACGGATGAAGAGCGATTCGGTCTATCAGCTTATCTTCCCGATGCTGA
CCAGCAGACATTCATGCATACGTTGAAGGAATTGCTGGCTGGAGAGAATTTCCACTTTGGCAGCCCTTTGGTTGAACTTTTTGATATGTTGAAAGGAGGTCTTTGTCAGCCGCATGTTGCTCGGTATCGGGAAGGTCTGAAGTATTTGGAGAGGAAAGAGCATTATCACTTTTTAAGAACATATCAGGATAGCATGGTCA
GTAATCTCCTTGAAATGAGGGAAACCTGGGAACGCTGCAGACACCTAAGTATTGATGATAGGCTTAGTATTTGGAATTTGAGGAAATATAGGAAGGCTTTGGTTCAAACTGAACCGCAGGCTTTGCCACCAAGGCTTTCGCTTTCAGAGCAAAAGCACAAGTTCAAGCATTTACGAAAGGGAAAAATGGGACCACTAACA
CGCTCGATCAAAATGCCCAAGCTTCCTAGGGATGAAAACTTGTTTGAAGTAGTTGAGCCTCTTCCAAAAGAAAAGGCCTTGACTAACAAACTTGATGGCAGGTATTTATTGGCAGGAAAGGTACACGCGGAGACTTATTTGGAGGTCCACCGCTCTGGAACATTGCAATCAAAAGAGACTGAAAAAATTGGAAAACAATT
TCCGAAAGGAATGCTAAAACTAGCAAAAAAATGTGTTATGACAAAGCATGGGCGGACTGGAATGCACCCTGAAATCAGTCAACAGGCACAATTTCCAGAAATGCAGGATTTTGGAACTAAATATGAACCATTGTCCTTGCTTCCTCCTGTTAACAAATGGGAGGCTGATGACTTTGTTGGAGAGACATCGTTTACGATGC
GGAAGACAAGAAGTAGGACCAAAATTAACAGCTCAGGAACATCTTTGAGTCATGAAAAGGGACACCAATCTTGGAATTATTTGAATAGCGATGCAGGTCAAGAGAGAAGTAGCTCACTGCATGGCAGGAAGTTGGGAAGGATAAAGGAGCAAGAAATGTCTAACAGGATAGGTGTTCAGGTCCCTTTAAAGTTCAGCAAA
AACATTGGACGGTTCAAGGAAGAAAGCAATCTTGCAGGAGGGAGGGCAATTTTTGAAGATTCTGAAAAAAGAGGAGAAAGGGCAAAAGAATTGCAAGAGGGCACAAGAAAGCGCCCACAAGAACTATCAAAGGAAAAAGTGAATATGATATCTTCAAAAAATTCAAGGAAATATCCCCAAGAGAGAGTCATGTTTGATCT
TTATTCAGATGCTGAGGAGCAAGGGCAAAACTCAGAGAAAATGAAAAGAAATCTTCTTAAGCATCAGAAAAGACCAACTGAACAGTACAGAGTACCAGTTGGTCATGATTATGCTTGGGACAAGCAACAGTCCTTGCCATTTCTGCTAAAACAAAATTGTCACAAAGAGCTGGACATGAAACAACCAGAACCATGCAAAG
AGAAGAAAAGGAAAACTGACTATATTAAAAACTTGGAGCAACTTAAAAAGAAGAATGGAGCAATCAATCAATCATCACAAGATCTGTTGAGGATCTCAGCAAAGAAAAATAAATCAATTGAACAGTCCTCGGGAGAGCACCAGGTAAAGTGCCTGGAAGTGCAGTCAGCACTTGCAGAGAATAGAAGATATGATTTGGGT
ATTAGTTTGTCTTTGGATAACTCAAGAAAATCTGATGAAGGGAAGAAAAAGAAAAGAAAGCAAAGACAAATTGATGATGAACAGCAAGGATTAATAGGTTCAGACAGCACCAAAGAGCATATGGAGAATCTAAAAAGATTTAAAAGGAAAATCAAGGACTCAGAGAAAAGTGAGTCACATGAAATTCTTCTATCTCCAAC
AGAAGACGATGAGGATGTTACTCAAATTGGTGATACAAAACTGGTTTCAAGCATTCATAATGATGCTGAAATGAGTTTATGGCTGCAGTCAGGTGAAGATACATTGCTGCAGAAAAGACCTAAGATTGACTTGGAAGAGGATGGAGAAACAGTTGTTGGGGAGGTGTCAAATAGATCACTTGGCAATTCACAGTATGGTT
TAGATGAACAGACAGAAAAAGAAAAGCCACTAAAGAAAATGGGGAAGAAGATGTCAAAAGCAGATGCTATTGTCCTTACTGGAGTGAAAGAAATGAATGGGCTGCATATTAACCCTAGGCTTAGTCCATGCCAGGAATTGTTTGGAGCAAAGCCATTGAAGAGAGGAACTAAGAAGGTAGAGGATGCCAAAATCCTTGAC
GGGATGGCAGAGTCTAATGGAATTAAAGGTAGTGCTCAGCCTCTTATGTACTTGAATGGAGATGAATGCAAGCCTGGAAATAGAAAAACAAGGAAAGTAACAGCTGATGCTGAAATCCTTACTAGGGTGTCAGAGCTAAATGCTTTGCATAATAATGATCAGCCTAACTGCCAACAGACAGATGAAAGGAAGCCTGGGAA
AAAAGTAAAACAAGCTAGGAAGGAGGATAATATTGTATCTTTAGCGACCTTGCCTTCCAAACAGGCTATTGTAGCCGATAAAGTAACTACAGACACAAAACCCTCAAAGAAGCTCCCTCCTTTGGTTATACCTCCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTAGAACAGCTATGCTTT
CTCCCTCCTTTGGTTATACCTCCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTAGAACAGCTATGCTTTCTCCCTCTGTAGAAGATATTTCAGAGGTGGTGAATCATTCTGAAAAAAGTGACGGGGAGAGAGAGAGCTCAAACCAGGAGGGTCAGTTCACATTTTCTTCTGATGGGAAGGC
TGAGGATCAAAATTGTGTGTTCTTAAACCACCGTCTTGATGGCCATCCTGACATGTGTAAAACAGGTACAGATCCCAGTTATCTGGAACGTGAAAGACAGGTCAGTCCATCCTCTATACCTTTCCAAGAAATTTGCAAGCGGGTGCAGTTGAATCCAGGGGATCCTTGCATCCTTGAAACACCAGAGCCACTCCAGGATC
TAGTTCGTGGAGCATTGAAAATTTTTACATCAAAGACAGCACCTCCAGGAGTCAAGGGTTGGAAGCCCCTTGCAGTCTATGATAAATCTACCAGGAGCTGGTCATGGATTGGTCCAGTGCCCTCTAACTCCCTACGGCATGAGTCCATGGAAGTCCAGACTTCTCCAGAAGCATGGGGCATTTCTCAGAAGATGCTTTTA
AAATTGGTGGAAGCATTTGCAAATTGGCTGAAAAATGGGCAAGAAACTCTTCAGCAGATTGTTCTTTTGCCTTCCCCACCACCACCGTCAATGCCAACATGTATAGATGAAAAGGAAAGGTTTCGGGACTTGAGAGCTCAGAAAAGTTCAATCACTATCACCCCAAGTTCTGCTGACATGAGAACTTATTTCCGTAGAGA
AGAAATTCTTCGATACTCTGTACCTGACAGGGCCTTTTCTTACACTGCTGTAGATGGGCGTAAGGCAGTTGTTGCTCCACTGAGGAGATGTGGTGGAAAACCCACCTCAAAGGCTCGAGACCATTTTATGCTGAAGCCTGATAGGCCTCCTCATGTGACAATACTATGTCTTGTGAGAGATGCAGCTGCTAGATTGCCTG
GGAGCATTGGCACAAGGGCAGATGTTTGTACACTTATTAGGGATTCTCAGTACATTGTAGAAGACGTATCAGATGCACAAGTTAATCAGGTTGTTAGTGGAGCACTGGATCGCTTGCATTATGAGCGTGATCCTTGTGTGCAATTTGACGGAGATAGAAAATTGTGGGTTTACTTACACTCTGAAAGAGCTGAAGAAGAT
TTTGAGGATGATGGGACATCTTCTACAAAGAGATGGAAAAGGCAAAAGAAGGACAATGTTGAGAACTCTGACATTGGGCCTTGTAATGATGGTACTTATCATGGCATGGATGATCAGGATGCTTGTGGTTCAGGCCTTGGGTTTGATTTCTGCTCTCCTGATTATAATGGTGACTCATCATCTATATATTCTGGTGGCAA
GGCAGAACTTGTGTACAATAAGAATGGTTCTTTGACTAGTCCTCGTGTTCTTAGAAGTGGTTTCAATGGATCAAATATGGATGATGGTATGGTACCATTTATAGATCTCCCTCCATCCATACATTCTATTCCTGGTAGTATGCATGAAAGTCATCCGATGGGGTGGGAGGTCCTTGGATTAAATCCCTTGGGTCATGGAT
CAAATCTTAAATCACAAGAGCACATATCCAATAAGGAATTTGATAATGACACTTTTAGTAGAGAGAGACCTATTGAACTCTTAAGTGCCAGCCTGCTATGAGGAGTCTAATGATTACTTCTATCCAAGATGCCCAAGCTTTTGCCGTTTCAGGCTTTCAGCAAACTAGAGAAATGACACATTGCATTTCTGTCAATTTTA
CTTGGTGAAATAGGAAAATTCTGCAACTGCATCTCTTTGGAAAATCAATTCAATGTAAGTTTGCAGTTAAGGGAAATTGAGAAGGATCTGCTATAACTACTAGAGTGGATTAGCATGAAAGGCTGCCTTTAAAATATGGATAATGACTCAAAAGCAAAGTTACCTTGAAATCGATGTCAGCCACTTCAGCTAGGCCTAAT
CCTGCACCCGAACTTGTTAAACCCAAGCTCAATCTCTCCATTCATATTTGGACATGGCTTCTACAGGAAGAAGACTCTGGGCAATTATGTGAAAGCTGCTGTGATTGTGTGGAGGGGGACGGTGTCATATGGGGGCAGCCACATGGTATATGGAAAGAATCTGACAATCTATTCTAATGATTTGGCGGGGTCTCTCAATT
TGACAACAGCATTCTATTACTGTTCTCGAAGTATTCCAGTTGTTGCACCTATCTACATCGTTGGGGTGAAAGCTGTTGGGGGCAAACACTGGCTTCCTTGTATATTCTTGTTCTTCATTACACATAAAAGGACGAGTTTGCTTTGTATAGAGGAGTTGGAGAGCTAATTTATGTTAGGCACACATTTAATTCCTATTCTA
TTAAGTTCCTGTAACATACTTCCTTTTTAAGGCTTGAAGAATGGACAGGTGTAAAATAATGGATGGGAGGTGGTGAAGGACAATCTTGCCTATGATGAAAATATTGAGTCAATCTCATATCTATTGCCAACCATGAATTGTATTTATGAGGTGCTTATAGTCATTAATATTTTTTGACCTCCATAATTTTCCATTATAAT
ATCAAAATTAAGTGCACAAGTTTGATGTTTGTCCCTTCTATTTTGCTTGAAAATTTTCAAGCACTCTTGTCCATTTAGGTTAAATTGTTCATTGCTTATAGTTACAATCTTGAGCCCCA
>TRINITY_DN123232_c0_g1_i7 from sample A1 / Example unspliced isoform:AGAACGCCGAGAGGAACCAAGATGCTGGCATTTACTGCGACGGTAACAAGCTAAAGGGACAAAAGAACACATATCTTTGTAGGAAAATTTAACGGCAGGGTAACATTTCATTGAACGAACTCACTCCGTTAAGGATGATGAACATCTACTGCTAAAAGCATAGGAGAGAGAAGATGTGATGGATGATTATAGCATTAAAT
GTTAACATTCCATGCTAAGGTTCGGCTCACCTCTCTCTCACCATGCGATTTGGATTTGGAATTGGAATTGGGCGTCCTCAACGGTTTTCATGGTGATTAGCTGCGTTATTTTGGGCACAACCAGTCCTTAATTTTTAGCGCCCACGGTTTTATTCTCTTTGCATTTTCAAGCGTTTCGATTTTTCAGTTTGTTCCTTAAT
TTCCCCGAAGTCGGCTTCTTCTTCGTTCCTTTATTTCTTCCGGAACGATACAGAATCTAGGGCTCTCTCTCGGACCTATCATGAACTCCAGCAGGTCGTTTCGGGGTCGAAGGCAGGGCTCAATTCGTGGTTTGAAGGTATTCAAATGCTCTTTTTTCGCGGAAATTCACATCTAGTTTTACCGGATTCTTCAAAGTCAG
AATTATTCAACACAAGAAGGTCCCGCCGGAGAAAAAGGCAAAAACATTTCCGTGgtatgttgaatttcttcttttatgcttttaatttgttcgaattttgctagaatgtatcgtttgaacaattctttaggggttatcccagattattttactgtattttcttttttctttttccttgaagTTGTTCGAAATATCTTCCC
GTCAGCAATTTTGTCTGTCAAGATGTCTGAAAATTTGAATCGGAGTATTGGAGACAATACGGAGTTCTGGTCGAGTTCGGTTTGATTTCTGTAGAAAGTCGTGTTGGCCCTGTTGTGTGGATAAGAGTTGCTTTCGTGAGATTTACAAGGTTTTGTGTTATATTCCCAATGGCTATTGTTAAGAGAGGATATAGGGTTTC
AGGGGTTAGCAGCCAATTCCAATCTCAGGCACCGTGCAATTCTTCCATTTATGACGACGGGCCCAGGGGGAAGCACAGTCGGCCGTATCACGACGACGACGACGACGACGACGATGCAGACTCCGAGGCGGCGTCGGAGTCGTCGGATGGTTCCGACGTTGGAGAGAAAGGCACAGAATTGTGCCGTGTTGGGGAGCAGA
ATTCTAATATCCCTTATGAGCTTTTTGACCTGCCTGACTTGAGGCCTGTATTGTCCCTTGATACATGGAATCACTGCCTTACGGATGAAGAGCGATTCGGTCTATCAGCTTATCTTCCCGATGCTGACCAGCAGACATTCATGCATACGTTGAAGGAATTGCTGGCTGGAGAGAATTTCCACTTTGGCAGCCCTTTGGTT
GAACTTTTTGATATGTTGAAAGGAGGTCTTTGTCAGCCGCATGTTGCTCGGTATCGGGAAGGTCTGAAGTATTTGGAGAGGAAAGAGCATTATCACTTTTTAAGAACATATCAGGATAGCATGGTCAGTAATCTCCTTGAAATGAGGGAAACCTGGGAACGCTGCAGACACCTAAGTATTGATGATAGGCTTAGTATTTG
GAATTTGAGGAAATATAGGAAGGCTTTGGTTCAAACTGAACCGCAGGCTTTGCCACCAAGGCTTTCGCTTTCAGAGCAAAAGCACAAGTTCAAGCATTTACGAAAGGGAAAAATGGGACCACTAACACGCTCGATCAAAATGCCCAAGCTTCCTAGGGATGAAAACTTGTTTGAAGTAGTTGAGCCTCTTCCAAAAGAAA
AGGCCTTGACTAACAAACTTGATGGCAGGTATTTATTGGCAGGAAAGGTACACGCGGAGACTTATTTGGAGGTCCACCGCTCTGGAACATTGCAATCAAAAGAGACTGAAAAAATTGGAAAACAATTTCCGAAAGGAATGCTAAAACTAGCAAAAAAATGTGTTATGACAAAGCATGGGCGGACTGGAATGCACCCTGAA
ATCAGTCAACAGGCACAATTTCCAGAAATGCAGGATTTTGGAACTAAATATGAACCATTGTCCTTGCTTCCTCCTGTTAACAAATGGGAGGCTGATGACTTTGTTGGAGAGACATCGTTTACGATGCGGAAGACAAGAAGTAGGACCAAAATTAACAGCTCAGGAACATCTTTGAGTCATGAAAAGGGACACCAATCTTG
GAATTATTTGAATAGCGATGCAGGTCAAGAGAGAAGTAGCTCACTGCATGGCAGGAAGTTGGGAAGGATAAAGGAGCAAGAAATGTCTAACAGGATAGGTGTTCAGGTCCCTTTAAAGTTCAGCAAAAACATTGGACGGTTCAAGGAAGAAAGCAATCTTGCAGGAGGGAGGGCAATTTTTGAAGATTCTGAAAAAAGAG
GAGAAAGGGCAAAAGAATTGCAAGAGGGCACAAGAAAGCGCCCACAAGAACTATCAAAGGAAAAAGTGAATATGATATCTTCAAAAAATTCAAGGAAATATCCCCAAGAGAGAGTCATGTTTGATCTTTATTCAGATGCTGAGGAGCAAGGGCAAAACTCAGAGAAAATGAAAAGAAATCTTCTTAAGCATCAGAAAAGA
CCAACTGAACAGTACAGAGTACCAGTTGGTCATGATTATGCTTGGGACAAGCAACAGTCCTTGCCATTTCTGCTAAAACAAAATTGTCACAAAGAGCTGGACATGAAACAACCAGAACCATGCAAAGAGAAGAAAAGGAAAACTGACTATATTAAAAACTTGGAGCAACTTAAAAAGAAGAATGGAGCAATCAATCAATC
ATCACAAGATCTGTTGAGGATCTCAGCAAAGAAAAATAAATCAATTGAACAGTCCTCGGGAGAGCACCAGGTAAAGTGCCTGGAAGTGCAGTCAGCACTTGCAGAGAATAGAAGATATGATTTGGGTATTAGTTTGTCTTTGGATAACTCAAGAAAATCTGATGAAGGGAAGAAAAAGAAAAGAAAGCAAAGACAAATTG
ATGATGAACAGCAAGGATTAATAGGTTCAGACAGCACCAAAGAGCATATGGAGAATCTAAAAAGATTTAAAAGGAAAATCAAGGACTCAGAGAAAAGTGAGTCACATGAAATTCTTCTATCTCCAACAGAAGACGATGAGGATGTTACTCAAATTGGTGATACAAAACTGGTTTCAAGCATTCATAATGATGCTGAAATG
AGTTTATGGCTGCAGTCAGGTGAAGATACATTGCTGCAGAAAAGACCTAAGATTGACTTGGAAGAGGATGGAGAAACAGTTGTTGGGGAGGTGTCAAATAGATCACTTGGCAATTCACAGTATGGTTTAGATGAACAGACAGAAAAAGAAAAGCCACTAAAGAAAATGGGGAAGAAGATGTCAAAAGCAGATGCTATTGT
CCTTACTGGAGTGAAAGAAATGAATGGGCTGCATATTAACCCTAGGCTTAGTCCATGCCAGGAATTGTTTGGAGCAAAGCCATTGAAGAGAGGAACTAAGAAGGTAGAGGATGCCAAAATCCTTGACGGGATGGCAGAGTCTAATGGAATTAAAGGTAGTGCTCAGCCTCTTATGTACTTGAATGGAGATGAATGCAAGC
CTGGAAATAGAAAAACAAGGAAAGTAACAGCTGATGCTGAAATCCTTACTAGGGTGTCAGAGCTAAATGCTTTGCATAATAATGATCAGCCTAACTGCCAACAGACAGATGAAAGGAAGCCTGGGAAAAAAGTAAAACAAGCTAGGAAGGAGGATAATATTGTATCTTTAGCGACCTTGCCTTCCAAACAGGCTATTGTA
GCCGATAAAGTAACTACAGACACAAAACCCTCAAAGAAGCTCCCTCCTTTGGTTATACCTCCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTAGAACAGCTATGCTTTCTCCCTCCTTTGGTTATACCTCCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTA
GAACAGCTATGCTTTCTCCCTCTGTAGAAGATATTTCAGAGGTGGTGAATCATTCTGAAAAAAGTGACGGGGAGAGAGAGAGCTCAAACCAGGAGGGTCAGTTCACATTTTCTTCTGATGGGAAGGCTGAGGATCAAAATTGTGTGTTCTTAAACCACCGTCTTGATGGCCATCCTGACATGTGTAAAACAGGTACAGAT
CCCAGTTATCTGGAACGTGAAAGACAGGTCAGTCCATCCTCTATACCTTTCCAAGAAATTTGCAAGCGGGTGCAGTTGAATCCAGGGGATCCTTGCATCCTTGAAACACCAGAGCCACTCCAGGATCTAGTTCGTGGAGCATTGAAAATTTTTACATCAAAGACAGCACCTCCAGGAGTCAAGGGTTGGAAGCCCCTTGC
AGTCTATGATAAATCTACCAGGAGCTGGTCATGGATTGGTCCAGTGCCCTCTAACTCCCTACGGCATGAGTCCATGGAAGTCCAGACTTCTCCAGAAGCATGGGGCATTTCTCAGAAGATGCTTTTAAAATTGGTGGAAGCATTTGCAAATTGGCTGAAAAATGGGCAAGAAACTCTTCAGCAGATTGTTCTTTTGCCTT
CCCCACCACCACCGTCAATGCCAACATGTATAGATGAAAAGGAAAGGTTTCGGGACTTGAGAGCTCAGAAAAGTTCAATCACTATCACCCCAAGTTCTGCTGACATGAGAACTTATTTCCGTAGAGAAGAAATTCTTCGATACTCTGTACCTGACAGGGCCTTTTCTTACACTGCTGTAGATGGGCGTAAGGCAGTTGTT
GCTCCACTGAGGAGATGTGGTGGAAAACCCACCTCAAAGGCTCGAGACCATTTTATGCTGAAGCCTGATAGGCCTCCTCATGTGACAATACTATGTCTTGTGAGAGATGCAGCTGCTAGATTGCCTGGGAGCATTGGCACAAGGGCAGATGTTTGTACACTTATTAGGGATTCTCAGTACATTGTAGAAGACGTATCAGA
TGCACAAGTTAATCAGGTTGTTAGTGGAGCACTGGATCGCTTGCATTATGAGCGTGATCCTTGTGTGCAATTTGACGGAGATAGAAAATTGTGGGTTTACTTACACTCTGAAAGAGCTGAAGAAGATTTTGAGGATGATGGGACATCTTCTACAAAGAGATGGAAAAGGCAAAAGAAGGACAATGTTGAGAACTCTGACA
TTGGGCCTTGTAATGATGGTACTTATCATGGCATGGATGATCAGGATGCTTGTGGTTCAGGCCTTGGGTTTGATTTCTGCTCTCCTGATTATAATGGTGACTCATCATCTATATATTCTGGTGGCAAGGCAGAACTTGTGTACAATAAGAATGGTTCTTTGACTAGTCCTCGTGTTCTTAGAAGTGGTTTCAATGGATCA
AATATGGATGATGGTATGGTACCATTTATAGATCTCCCTCCATCCATACATTCTATTCCTGGTAGTATGCATGAAAGTCATCCGATGGGGTGGGAGGTCCTTGGATTAAATCCCTTGGGTCATGGATCAAATCTTAAATCACAAGAGCACATATCCAATAAGGAATTTGATAATGACACTTTTAGTAGAGAGAGACCTAT
TGAACTCTTAAGTGCCAGCCTGCTATGAGGAGTCTAATGATTACTTCTATCCAAGATGCCCAAGGAAAGAATCTGACAATCTATTCTAATGATTTGGCGGGGTCTCTCAATTTGACAACAGCATTCTATTACTGTTCTCGAAGTATTCCAGTTGTTGCACCTATCTACATCGTTGGGGTGAAAGCTGTTGGGGGCAAACA
CTGGCTTCCTTGTATATTCTTGTTCTTCATTACACATAAAAGGACGAGTTTGCTTTGTATAGAGGAGTTGGAGAGCTAATTTATGTTAGGCACACATTTAATTCCTATTCTATTAAGTTCCTGTAACATACTTCCTTTTTAAGGCTTGAAGAATGGACAGGTGTAAAATAATGGATGGGAGGTGGTGAAGGACAATCTTG
CCTATGATGAAAATATTGAGTCAATCTCATATCTATTGCCAACCATGAATTGTATTTATGAGGTGCTTATAGTCATTAATATTTTTTGACCTCCATAATTTTCCATTATAATATCAAAATTAAGTGCACAAGTTTGATGTTTGTCCCTTCTATTTTGCTTGAAAATTTTCAAGCACTCTTGTCCATTTAGGTTAAATTGT
TCATTGCTTATAGTTACAATCTTGAGCCCCA
Intron 4 GTAAGTTTGC ... GCTTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.73 | 6 | 14 | 18 |
| A2 | 54.29 | 8 | 13 | 6 |
| A3 | 68.42 | 3 | 7 | 6 |
| A4 | 58.33 | 5 | 6 | 8 |
| A5 | 100 | 0 | 6 | 1 |
| A6 | 57.14 | 12 | 12 | 20 |
| A7 | 56.76 | 8 | 9 | 12 |
| A8 | 53.85 | 15 | 15 | 20 |
| A9 | 51.85 | 13 | 12 | 16 |
| A10 | 58.33 | 5 | 7 | 7 |
>TRINITY_DN42258_c0_g1_i4 from sample A7 / Example spliced isoformTTCCACTTTGGCAGCCCTTTGGTTGAACTTTTTGATATGTTGAAAGGAGGTCTTTGTCAGCCGCATGTTGCTCGGTATCGGGAAGGTCTGAAGTATTTGGAGAGGAAAGAGCATTATCACTTTTTAAGAACATATCAGGATAGCATGGTCAGTAATCTCCTTGAAATGAGGGAAACCTGGGAACGCTGCAGACACCTAAG
TATTGATGATAGGCTTAGTATTTGGAATTTGAGGAAATATAGGAAGGCTTTGGTTCAAACTGAACCGCAGGCTTTGCCACCAAGGCTTTCGCTTTCAGAGCAAAAGCACAAGTTCAAGCATTTACGAAAGGGAAAAATGGGACCACTAACACGCTCGATCAAAATGCCCAAGCTTCCTAGGGATGAAAACTTGTTTGAAG
TAGTTGAGCCTCTTCCAAAAGAAAAGGCCTTGACTAACAAACTTGATGGCAGGTATTTATTGGCAGGAAAGGTACACGCGGAGACTTATTTGGAGGTCCACCGCTCTGGAACATTGCAATCAAAAGAGACTGAAAAAATTGGAAAACAATTTCCGAAAGGAATGCTAAAACTAGCAAAAAAATGTGTTATGACAAAGCAT
GGGCGGACTGGAATGCACCCTGAAATCAGTCAACAGGCACAATTTCCAGAAATGCAGGATTTTGGAACTAAATATGAACCATTGTCCTTGCTTCCTCCTGTTAACAAATGGGAGGCTGATGACTTTGTTGGAGAGACATCGTTTACGATGCGGAAGACAAGAAGTAGGACCAAAATTAACAGCTCAGGAACATCTTTGAG
TCATGAAAAGGGACACCAATCTTGGAATTATTTGAATAGCGATGCAGGTCAAGAGAGAAGTAGCTCACTGCATGGCAGGAAGTTGGGAAGGATAAAGGAGCAAGAAATGTCTAACAGGATAGGTGTTCAGGTCCCTTTAAAGTTCAGCAAAAACATTGGACGGTTCAAGGAAGAAAGCAATCTTGCAGGAGGGAGGGCAA
TTTTTGAAGATTCTGAAAAAAGAGGAGAAAGGGCAAAAGAATTGCAAGAGGGCACAAGAAAGCGCCCACAAGAACTATCAAAGGAAAAAGTGAATATGATATCTTCAAAAAATTCAAGGAAATATCCCCAAGAGAGAGTCATGTTTGATCTTTATTCAGATGCTGAGGAGCAAGGGCAAAACTCAGAGAAAATGAAAAGA
AATCTTCTTAAGCATCAGAAAAGACCAACTGAACAGTACAGAGTACCAGTTGGTCATGATTATGCTTGGGACAAGCAACAGTCCTTGCCATTTCTGCTAAAACAAAATTGTCACAAAGAGCTGGACATGAAACAACCAGAACCATGCAAAGAGAAGAAAAGGAAAACTGACTATATTAAAAACTTGGAGCAACTTAAAAA
GAAGAATGGAGCAATCAATCAATCATCACAAGATCTGTTGAGGATCTCAGCAAAGAAAAATAAATCAATTGAACAGTCCTCGGGAGAGCACCAGGTAAAGTGCCTGGAAGTGCAGTCAGCACTTGCAGAGAATAGAAGATATGATTTGGGTATTAGTTTGTCTTTGGATAACTCAAGAAAATCTGATGAAGGGAAGAAAA
AGAAAAGAAAGCAAAGACAAATTGATGATGAACAGCAAGGATTAATAGGTTCAGACAGCACCAAAGAGCATATGGAGAATCTAAAAAGATTTAAAAGGAAAATCAAGGACTCAGAGAAAAGTGAGTCACATGAAATTCTTCTATCTCCAACAGAAGACGATGAGGATGTTACTCAAATTGGTGATACAAAACTGGTTTCA
AGCATTCATAATGATGCTGAAATGAGTTTATGGCTGCAGTCAGGTGAAGATACATTGCTGCAGAAAAGACCTAAGATTGACTTGGAAGAGGATGGAGAAACAGTTGTTGGGGAGGTGTCAAATAGATCACTTGGCAATTCACAGTATGGTTTAGATGAACAGACAGAAAAAGAAAAGCCACTAAAGAAAATGGGGAAGAA
GATGTCAAAAGCAGATGCTATTGTCCTTACTGGAGTGAAAGAAATGAATGGGCTGCATATTAACCCTAGGCTTAGTCCATGCCAGGAATTGTTTGGAGCAAAGCCATTGAAGAGAGGAACTAAGAAGGTAGAGGATGCCAAAATCCTTGACGGGATGGCAGAGTCTAATGGAATTAAAGGTAGTGCTCAGCCTCTTATGT
ACTTGAATGGAGATGAATGCAAGCCTGGAAATAGAAAAACAAGGAAAGTAACAGCTGATGCTGAAATCCTTACTAGGGTGTCAGAGCTAAATGCTTTGCATAATAATGATCAGCCTAACTGCCAACAGACAGATGAAAGGAAGCCTGGGAAAAAAGTAAAACAAGCTAGGAAGGAGGATAATATTGTATCTTTAGCGACC
TTGCCTTCCAAACAGGCTATTGTAGCCGATAAAGTAACTACAGACACAAAACCCTCAAAGAAGCTCCCTCCTTTGGTTATACCTCCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTAGAACAGCTATGCTTTCTCCCTCTGTAGAAGATATTTCAGAGGTGGTGAATCATTCTGAAAAAAG
TGACGGGGAGAGAGAGAGCTCAAACCAGGAGGGTCAGTTCACATTTTCTTCTGATGGGAAGGCTGAGGATCAAAATTGTGTGTTCTTAAACCACCGTCTTGATGGCCATCCTGACATGTGTAAAACAGGTACAGATCCCAGTTATCTGGAACGTGAAAGACAGGTCAGTCCATCCTCTATACCTTTCCAAGAAATTTGCA
AGCGGGTGCAGTTGAATCCAGGGGATCCTTGCATCCTTGAAACACCAGAGCCACTCCAGGATCTAGTTCGTGGAGCATTGAAAATTTTTACATCAAAGACAGCACCTCCAGGAGTCAAGGGTTGGAAGCCCCTTGCAGTCTATGATAAATCTACCAGGAGCTGGTCATGGATTGGTCCAGTGCCCTCTAACTCCCTACGG
CATGAGTCCATGGAAGTCCAGACTTCTCCAGAAGCATGGGGCATTTCTCAGAAGATGCTTTTAAAATTGGTGGAAGCATTTGCAAATTGGCTGAAAAATGGGCAAGAAACTCTTCAGCAGATTGTTCTTTTGCCTTCCCCACCACCACCGTCAATGCCAACATGTATAGATGAAAAGGAAAGGTTTCGGGACTTGAGAGC
TCAGAAAAGTTCAATCACTATCACCCCAAGTTCTGCTGACATGAGAACTTATTTCCGTAGAGAAGAAATTCTTCGATACTCTGTACCTGACAGGGCCTTTTCTTACACTGCTGTAGATGGGCGTAAGGCAGTTGTTGCTCCACTGAGGAGATGTGGTGGAAAACCCACCTCAAAGGCTCGAGACCATTTTATGCTGAAGC
CTGATAGGCCTCCTCATGTGACAATACTATGTCTTGTGAGAGATGCAGCTGCTAGATTGCCTGGGAGCATTGGCACAAGGGCAGATGTTTGTACACTTATTAGGGATTCTCAGTACATTGTAGAAGACGTATCAGATGCACAAGTTAATCAGGTTGTTAGTGGAGCACTGGATCGCTTGCATTATGAGCGTGATCCTTGT
GTGCAATTTGACGGAGATAGAAAATTGTGGGTTTACTTACACTCTGAAAGAGCTGAAGAAGATTTTGAGGATGATGGGACATCTTCTACAAAGAGATGGAAAAGGCAAAAGAAGGACAATGTTGAGAACTCTGACATTGGGCCTTGTAATGATGGTACTTATCATGGCATGGATGATCAGGATGCTTGTGGTTCAGGCCT
TGGGTTTGATTTCTGCTCTCCTGATTATAATGGTGACTCATCATCTATATATTCTGGTGGCAAGGCAGAACTTGTGTACAATAAGAATGGTTCTTTGACTAGTCCTCGTGTTCTTAGAAGTGGTTTCAATGGATCAAATATGGATGATGGTATGGTACCATTTATAGATCTCCCTCCATCCATACATTCTATTCCTGGTA
GTATGCATGAAAGTCATCCGATGGGGTGGGAGGTCCTTGGATTAAATCCCTTGGGTCATGGATCAAATCTTAAATCACAAGAGCACATATCCAATAAGGAATTTGATAATGACACTTTTAGTAGAGAGAGACCTATTGAACTCTTAAGTGCCAGCCTGCTATGAGGAGTCTAATGATTACTTCTATCCAAGATGCCCAAG
CTTTTGCCGTTTCAGGCTTTCAGCAAACTAGAGAAATGACACATTGCATTTCTGTCAATTTTACTTGGTGAAATAGGAAAATTCTGCAACTGCATCTCTTTGGAAAATCAATTCAATGAAGAAGACTCTGGGCAATTATGTGAAAGCTGCTGTGATTGTGTGGAGGGGGACGGTGTCATATGGGGGCAGCCACATGGTAT
ATGGAAAGAATCTGACAATCTATTCTAATGATTTGGCGGGGTCTCTCAATTTGACAACAGCATTCTATTACTGTTCTCGAAGTATTCCAGTTGTTGCACCTATCTACATCGTTGGGGTGAAAGCTGTTGGGGGCAAACACTGGCTTCCTTGTATATTCTTGTTCTTCATTACACATAAAAGGACGAGTTTGCTTTGTATA
GAGGAGTTGGAGAGCTAATTTATGTTAGGCACACATTTAATTCCTATTCTATTAAGTTCCTGTAACATACTTCCTTTTTAAGGCTTGAAGAATGGACAGGTGTAAAATAATGGATGGGAGGTGGTGAAGGACAATCTTGCCTATGATGAAAATATTGAGTCAATCTCATATCTATTGCCAACCATGAATTGTATTTATGA
GGTGCTTATAGTCATTAATATTTTTTGACCTCCATAATTTTCCATTATAATATCAAAATTAAGTGCACAAGTTTGATGTTTGTCCCTTCTATTTTGCTTGAAAATTTTCAAGCACTCTTGTCCATTTAGGTTAAATTGTTCATTGCTTATAGTGACAATCTTGAGCCCCAGGTGCTTATTTTTGGTTCCTTGAATTTTGC
AAGCGG
>TRINITY_DN42258_c0_g1_i2 from sample A7 / Example unspliced isoform:TTCCACTTTGGCAGCCCTTTGGTTGAACTTTTTGATATGTTGAAAGGAGGTCTTTGTCAGCCGCATGTTGCTCGGTATCGGGAAGGTCTGAAGTATTTGGAGAGGAAAGAGCATTATCACTTTTTAAGAACATATCAGGATAGCATGGTCAGTAATCTCCTTGAAATGAGGGAAACCTGGGAACGCTGCAGACACCTAAG
TATTGATGATAGGCTTAGTATTTGGAATTTGAGGAAATATAGGAAGGCTTTGGTTCAAACTGAACCGCAGGCTTTGCCACCAAGGCTTTCGCTTTCAGAGCAAAAGCACAAGTTCAAGCATTTACGAAAGGGAAAAATGGGACCACTAACACGCTCGATCAAAATGCCCAAGCTTCCTAGGGATGAAAACTTGTTTGAAG
TAGTTGAGCCTCTTCCAAAAGAAAAGGCCTTGACTAACAAACTTGATGGCAGGTATTTATTGGCAGGAAAGGTACACGCGGAGACTTATTTGGAGGTCCACCGCTCTGGAACATTGCAATCAAAAGAGACTGAAAAAATTGGAAAACAATTTCCGAAAGGAATGCTAAAACTAGCAAAAAAATGTGTTATGACAAAGCAT
GGGCGGACTGGAATGCACCCTGAAATCAGTCAACAGGCACAATTTCCAGAAATGCAGGATTTTGGAACTAAATATGAACCATTGTCCTTGCTTCCTCCTGTTAACAAATGGGAGGCTGATGACTTTGTTGGAGAGACATCGTTTACGATGCGGAAGACAAGAAGTAGGACCAAAATTAACAGCTCAGGAACATCTTTGAG
TCATGAAAAGGGACACCAATCTTGGAATTATTTGAATAGCGATGCAGGTCAAGAGAGAAGTAGCTCACTGCATGGCAGGAAGTTGGGAAGGATAAAGGAGCAAGAAATGTCTAACAGGATAGGTGTTCAGGTCCCTTTAAAGTTCAGCAAAAACATTGGACGGTTCAAGGAAGAAAGCAATCTTGCAGGAGGGAGGGCAA
TTTTTGAAGATTCTGAAAAAAGAGGAGAAAGGGCAAAAGAATTGCAAGAGGGCACAAGAAAGCGCCCACAAGAACTATCAAAGGAAAAAGTGAATATGATATCTTCAAAAAATTCAAGGAAATATCCCCAAGAGAGAGTCATGTTTGATCTTTATTCAGATGCTGAGGAGCAAGGGCAAAACTCAGAGAAAATGAAAAGA
AATCTTCTTAAGCATCAGAAAAGACCAACTGAACAGTACAGAGTACCAGTTGGTCATGATTATGCTTGGGACAAGCAACAGTCCTTGCCATTTCTGCTAAAACAAAATTGTCACAAAGAGCTGGACATGAAACAACCAGAACCATGCAAAGAGAAGAAAAGGAAAACTGACTATATTAAAAACTTGGAGCAACTTAAAAA
GAAGAATGGAGCAATCAATCAATCATCACAAGATCTGTTGAGGATCTCAGCAAAGAAAAATAAATCAATTGAACAGTCCTCGGGAGAGCACCAGGTAAAGTGCCTGGAAGTGCAGTCAGCACTTGCAGAGAATAGAAGATATGATTTGGGTATTAGTTTGTCTTTGGATAACTCAAGAAAATCTGATGAAGGGAAGAAAA
AGAAAAGAAAGCAAAGACAAATTGATGATGAACAGCAAGGATTAATAGGTTCAGACAGCACCAAAGAGCATATGGAGAATCTAAAAAGATTTAAAAGGAAAATCAAGGACTCAGAGAAAAGTGAGTCACATGAAATTCTTCTATCTCCAACAGAAGACGATGAGGATGTTACTCAAATTGGTGATACAAAACTGGTTTCA
AGCATTCATAATGATGCTGAAATGAGTTTATGGCTGCAGTCAGGTGAAGATACATTGCTGCAGAAAAGACCTAAGATTGACTTGGAAGAGGATGGAGAAACAGTTGTTGGGGAGGTGTCAAATAGATCACTTGGCAATTCACAGTATGGTTTAGATGAACAGACAGAAAAAGAAAAGCCACTAAAGAAAATGGGGAAGAA
GATGTCAAAAGCAGATGCTATTGTCCTTACTGGAGTGAAAGAAATGAATGGGCTGCATATTAACCCTAGGCTTAGTCCATGCCAGGAATTGTTTGGAGCAAAGCCATTGAAGAGAGGAACTAAGAAGGTAGAGGATGCCAAAATCCTTGACGGGATGGCAGAGTCTAATGGAATTAAAGGTAGTGCTCAGCCTCTTATGT
ACTTGAATGGAGATGAATGCAAGCCTGGAAATAGAAAAACAAGGAAAGTAACAGCTGATGCTGAAATCCTTACTAGGGTGTCAGAGCTAAATGCTTTGCATAATAATGATCAGCCTAACTGCCAACAGACAGATGAAAGGAAGCCTGGGAAAAAAGTAAAACAAGCTAGGAAGGAGGATAATATTGTATCTTTAGCGACC
TTGCCTTCCAAACAGGCTATTGTAGCCGATAAAGTAACTACAGACACAAAACCCTCAAAGAAGCTCCCTCCTTTGGTTATACCTCCAGTTGTTTCCAGTTTCTCATTCTCTGTTATACATTTTCTCTCTGCCGTTAGAACAGCTATGCTTTCTCCCTCTGTAGAAGATATTTCAGAGGTGGTGAATCATTCTGAAAAAAG
TGACGGGGAGAGAGAGAGCTCAAACCAGGAGGGTCAGTTCACATTTTCTTCTGATGGGAAGGCTGAGGATCAAAATTGTGTGTTCTTAAACCACCGTCTTGATGGCCATCCTGACATGTGTAAAACAGGTACAGATCCCAGTTATCTGGAACGTGAAAGACAGGTCAGTCCATCCTCTATACCTTTCCAAGAAATTTGCA
AGCGGGTGCAGTTGAATCCAGGGGATCCTTGCATCCTTGAAACACCAGAGCCACTCCAGGATCTAGTTCGTGGAGCATTGAAAATTTTTACATCAAAGACAGCACCTCCAGGAGTCAAGGGTTGGAAGCCCCTTGCAGTCTATGATAAATCTACCAGGAGCTGGTCATGGATTGGTCCAGTGCCCTCTAACTCCCTACGG
CATGAGTCCATGGAAGTCCAGACTTCTCCAGAAGCATGGGGCATTTCTCAGAAGATGCTTTTAAAATTGGTGGAAGCATTTGCAAATTGGCTGAAAAATGGGCAAGAAACTCTTCAGCAGATTGTTCTTTTGCCTTCCCCACCACCACCGTCAATGCCAACATGTATAGATGAAAAGGAAAGGTTTCGGGACTTGAGAGC
TCAGAAAAGTTCAATCACTATCACCCCAAGTTCTGCTGACATGAGAACTTATTTCCGTAGAGAAGAAATTCTTCGATACTCTGTACCTGACAGGGCCTTTTCTTACACTGCTGTAGATGGGCGTAAGGCAGTTGTTGCTCCACTGAGGAGATGTGGTGGAAAACCCACCTCAAAGGCTCGAGACCATTTTATGCTGAAGC
CTGATAGGCCTCCTCATGTGACAATACTATGTCTTGTGAGAGATGCAGCTGCTAGATTGCCTGGGAGCATTGGCACAAGGGCAGATGTTTGTACACTTATTAGGGATTCTCAGTACATTGTAGAAGACGTATCAGATGCACAAGTTAATCAGGTTGTTAGTGGAGCACTGGATCGCTTGCATTATGAGCGTGATCCTTGT
GTGCAATTTGACGGAGATAGAAAATTGTGGGTTTACTTACACTCTGAAAGAGCTGAAGAAGATTTTGAGGATGATGGGACATCTTCTACAAAGAGATGGAAAAGGCAAAAGAAGGACAATGTTGAGAACTCTGACATTGGGCCTTGTAATGATGGTACTTATCATGGCATGGATGATCAGGATGCTTGTGGTTCAGGCCT
TGGGTTTGATTTCTGCTCTCCTGATTATAATGGTGACTCATCATCTATATATTCTGGTGGCAAGGCAGAACTTGTGTACAATAAGAATGGTTCTTTGACTAGTCCTCGTGTTCTTAGAAGTGGTTTCAATGGATCAAATATGGATGATGGTATGGTACCATTTATAGATCTCCCTCCATCCATACATTCTATTCCTGGTA
GTATGCATGAAAGTCATCCGATGGGGTGGGAGGTCCTTGGATTAAATCCCTTGGGTCATGGATCAAATCTTAAATCACAAGAGCACATATCCAATAAGGAATTTGATAATGACACTTTTAGTAGAGAGAGACCTATTGAACTCTTAAGTGCCAGCCTGCTATGAGGAGTCTAATGATTACTTCTATCCAAGATGCCCAAG
CTTTTGCCGTTTCAGGCTTTCAGCAAACTAGAGAAATGACACATTGCATTTCTGTCAATTTTACTTGGTGAAATAGGAAAATTCTGCAACTGCATCTCTTTGGAAAATCAATTCAATgtaagtttgcagttaagggaaattgagaaggatctgctataactactagagtggattagcatgaaaggctgcctttaaaatat
ggataatgactcaaaagcaaagttaccttgaaatcgatgtcagccacttcagctaggcctaatcctgcacccgaacttgttaaacccaagctcaatctctccattcatatttggacatggcttctacagGAAGAAGACTCTGGGCAATTATGTGAAAGCTGCTGTGATTGTGTGGAGGGGGACGGTGTCATATGGGGGCA
GCCACATGGTATATGGAAAGAATCTGACAATCTATTCTAATGATTTGGCGGGGTCTCTCAATTTGACAACAGCATTCTATTACTGTTCTCGAAGTATTCCAGTTGTTGCACCTATCTACATCGTTGGGGTGAAAGCTGTTGGGGGCAAACACTGGCTTCCTTGTATATTCTTGTTCTTCATTACACATAAAAGGACGAGT
TTGCTTTGTATAGAGGAGTTGGAGAGCTAATTTATGTTAGGCACACATTTAATTCCTATTCTATTAAGTTCCTGTAACATACTTCCTTTTTAAGGCTTGAAGAATGGACAGGTGTAAAATAATGGATGGGAGGTGGTGAAGGACAATCTTGCCTATGATGAAAATATTGAGTCAATCTCATATCTATTGCCAACCATGAA
TTGTATTTATGAGGTGCTTATAGTCATTAATATTTTTTGACCTCCATAATTTTCCATTATAATATCAAAATTAAGTGCACAAGTTTGATGTTTGTCCCTTCTATTTTGCTTGAAAATTTTCAAGCACTCTTGTCCATTTAGGTTAAATTGTTCATTGCTTATAGTGACAATCTTGAGCCCCAGGTGCTTATTTTTGGTTC
CTTGAATTTTGCAAGCGG