sp|P42751|CCD11_ARATH ----> Cyclin-D1-1
Intron 1 GTATGTAACA ... TCCCCCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.55 | 31 | 27.5 | 50 |
| A2 | 67.84 | 32 | 65 | 70 |
| A3 | 82.86 | 18 | 90 | 84 |
| A4 | 69.54 | 30 | 59 | 78 |
| A5 | 83.74 | 10 | 54 | 49 |
| A6 | 77.31 | 29.5 | 103 | 98 |
| A7 | 81.04 | 46.5 | 206.5 | 191 |
| A8 | 75 | 25 | 69 | 81 |
| A9 | 80.72 | 40 | 163 | 172 |
| A10 | 80.08 | 51.5 | 239 | 175 |
>TRINITY_DN122424_c0_g1_i9 from sample A1 / Example spliced isoformCGGATGCATTGAAGCGAGGGCGCCGAGCGGAGTTGTATGCCTATTACCCGCCTGTGACTTCAGTTAGCGTCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGGTACGATTTTGTTCTTCACAACCGGGCTT
CCTACACTTTCTTTCTTTTTTCGTTAAAGATTAGCTTCGGCATTCGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTCAAGCGTACAGCCGAATCTCTGATTAGCAATAATGTGCAGCA
TCGTCGACAGTTTGTTGTGTAAAGAAGAAATTGGCGGAAGTCCGTGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGCTAGCCAAGGAGACGAGCTTCATGCCCGGACATGAATATCTG
AGGCGTTTGCAGTCCACCGACCTCCGACTTCGCGCCGTTCGTTGCAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCCTTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCGTGGAAGCCGTGGATGATAGAGTTGCTAACCGTTGGATGCAT
ATCCATTGCCGCAAAGCAGGAGGAAGTGCATGTCCCGCGTCTGGAAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGCTTATACCGATTCAATGCTTCAATATTTAGATCTATCTTCGA
GTATTCCAGCCTTCTTACATGCTCGTGTAACGGAATTGCTGCTGCAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAAAGCTCTGCAAGTTTATCTCTGTGGACAAGCAAAAGCTTCAG
GATTGTTACGAAATTATGGAAGAGCTGGTAGTAGATCCGCCGTGTCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAATAATGCAAATGTAGTAGTAATGTATAGGCAGCATGCCGATTC
AGTCCGAACTGTCTGCAAGTGGATCTCTCCCTGCAGAAATTCAAGCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCCTGATTCCAAGGCGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGTGTCCAAACACCTCATAAAAAAAATATTTCGTTCAAAATATT
GTTTGTTTTCCTCTTCAAAGTTTTGACATCCCGATTCCCAACGCGTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAAAAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTAAGAAGTGTTGCAGCTTCTCGTGAGATTCAATTGGACTTTGT
AGTCTTCGAGGGTCAGTTGTCTGCCAGATTACGGTCAAAACGATTCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGGTTTCTCCGGTGTGTTGAAGTGGTCAAAGTCCGTGGACAGAATATTTAAGCGATAAGTAATGATGTGTCTATAGGCACAGAC
TTCATGGTCGAACGGTTTGCAGTGTGTCTTGATTTGTGCACCTCAATATTTTACAAAGTATTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGAT
>TRINITY_DN122424_c0_g1_i6 from sample A1 / Example unspliced isoform:CGGATGCATTGAAGCGAGGGCGCCGAGCGGAGTTGTATGCCTATTACCCGCCTGTGACTTCAGTTAGCGTCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGGTACGATTTTGTTgtatgtaacaggctac
ctacaaaatctctgcttgatttctctgcatttttcttgtcttcattagaccattagttcattattgttgatttttcattaccccgcgccaatatccaagggatcaagctaaagagggctcccgacctcgatcccccgcagCTTCACAACCGGGCTTCCTACACTTTCTTTCTTTTTTCGTTAAAGATTAGCTTCGGCATT
CGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTCAAGCGTACAGCCGAATCTCTGATTAGCAATAATGTGCAGCATCGTCGACAGTTTGTTGTGTAAAGAAGAAATTGGCGGAAGTCCG
TGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGCTAGCCAAGGAGACGAGCTTCATGCCCGGACATGAATATCTGAGGCGTTTGCAGTCCACCGACCTCCGACTTCGCGCCGTTCGTTG
CAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCCTTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCGTGGAAGCCGTGGATGATAGAGTTGCTAACCGTTGGATGCATATCCATTGCCGCAAAGCAGGAGGAAGTGCATGTCCCGCGTCTGG
AAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGCTTATACCGATTCAATGCTTCAATATTTAGATCTATCTTCGAGTATTCCAGCCTTCTTACATGCTCGTGTAACGGAATTGCTGCTG
CAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAAAGCTCTGCAAGTTTATCTCTGTGGACAAGCAAAAGCTTCAGGATTGTTACGAAATTATGGAAGAGCTGGTAGTAGATCCGCCGTG
TCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAATAATGCAAATGTAGTAGTAATGTATAGGCAGCATGCCGATTCAGTCCGAACTGTCTGCAAGTGGATCTCTCCCTGCAGAAATTCAA
GCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCCTGATTCCAAGGCGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGTGTCCAAACACCTCATAAAAAAAATATTTCGTTCAAAATATTGTTTGTTTTCCTCTTCAAAGTTTTGACATCCCGATTCCCAACGC
GTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAAAAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTAAGAAGTGTTGCAGCTTCTCGTGAGATTCAATTGGACTTTGTAGTCTTCGAGGGTCAGTTGTCTGCCAGATTACGGTCAAAACGAT
TCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGGTTTCTCCGGTGTGTTGAAGTGGTCAAAGTCCGTGGACAGAATATTTAAGCGATAAGTAATGATGTGTCTATAGGCACAGACTTCATGGTCGAACGGTTTGCAGTGTGTCTTGATTTGTGCACCTC
AATATTTTACAAAGTATTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGAT
Intron 2 GTACGATTTT ... AATATCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.62 | 27 | 24.5 | 46 |
| A2 | 72.6 | 20 | 56 | 50 |
| A3 | 61.34 | 52 | 85 | 80 |
| A4 | 59.8 | 40 | 57 | 62 |
| A5 | 70.51 | 23 | 50 | 60 |
| A6 | 70.11 | 42 | 98 | 99 |
| A7 | 63.79 | 110 | 175.5 | 212 |
| A8 | 66.67 | 33 | 64 | 68 |
| A9 | 61.61 | 100 | 156 | 165 |
| A10 | 73.13 | 79 | 222 | 208 |
>TRINITY_DN122424_c0_g1_i3 from sample A1 / Example spliced isoformCGGATGCATTGAAGCGAGGGCGCCGAGCGGAGTTGTATGCCTATTACCCGCCTGTGACTTCAGTTAGCGTCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGGGATCAAGCTAAAGAGGGCTCCCGACCTC
GATCCCCCGCAGCTTCACAACCGGGCTTCCTACACTTTCTTTCTTTTTTCGTTAAAGATTAGCTTCGGCATTCGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTCAAGCGTACAGCCG
AATCTCTGATTAGCAATAATGTGCAGCATCGTCGACAGTTTGTTGTGTAAAGAAGAAATTGGCGGAAGTCCGTGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGCTAGCCAAGGAGAC
GAGCTTCATGCCCGGACATGAATATCTGAGGCGTTTGCAGTCCACCGACCTCCGACTTCGCGCCGTTCGTTGCAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCCTTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCGTGGAAGCCGTGGA
TGATAGAGTTGCTAACCGTTGGATGCATATCCATTGCCGCAAAGCAGGAGGAAGTGCATGTCCCGCGTCTGGAAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGCTTATACCGATTCA
ATGCTTCAATATTTAGATCTATCTTCGAGTATTCCAGCCTTCTTACATGCTCGTGTAACGGAATTGCTGCTGCAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAAAGCTCTGCAAGTT
TATCTCTGTGGACAAGCAAAAGCTTCAGGATTGTTACGAAATTATGGAAGAGCTGGTAGTAGATCCGCCGTGTCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAATAATGCAAATGTAG
TAGTAATGTATAGGCAGCATGCCGATTCAGTCCGAACTGTCTGCAAGTGGATCTCTCCCTGCAGAAATTCAAGCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCCTGATTCCAAGGCGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGTGTCCAAACACCTC
ATAAAAAAAATATTTCGTTCAAAATATTGTTTGTTTTCCTCTTCAAAGTTTTGACATCCCGATTCCCAACGCGTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAAAAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTAAGAAGTGTTGCAG
CTTCTCGTGAGATTCAATTGGACTTTGTAGTCTTCGAGGGTCAGTTGTCTGCCAGATTACGGTCAAAACGATTCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGGTTTCTCCGGTGTGTTGAAGTGGTCAAAGTCCGTGGACAGAATATTTAAGCGAT
AAGTAATGATGTGTCTATAGGCACAGACTTCATGGTCGAACGGTTTGCAGTGTGTCTTGATTTGTGCACCTCAATATTTTACAAAGTATTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGAT
>TRINITY_DN122424_c0_g1_i6 from sample A1 / Example unspliced isoform:CGGATGCATTGAAGCGAGGGCGCCGAGCGGAGTTGTATGCCTATTACCCGCCTGTGACTTCAGTTAGCGTCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGgtacgattttgttgtatgtaacaggctac
ctacaaaatctctgcttgatttctctgcatttttcttgtcttcattagaccattagttcattattgttgatttttcattaccccgcgccaatatccaagGGATCAAGCTAAAGAGGGCTCCCGACCTCGATCCCCCGCAGCTTCACAACCGGGCTTCCTACACTTTCTTTCTTTTTTCGTTAAAGATTAGCTTCGGCATT
CGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTCAAGCGTACAGCCGAATCTCTGATTAGCAATAATGTGCAGCATCGTCGACAGTTTGTTGTGTAAAGAAGAAATTGGCGGAAGTCCG
TGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGCTAGCCAAGGAGACGAGCTTCATGCCCGGACATGAATATCTGAGGCGTTTGCAGTCCACCGACCTCCGACTTCGCGCCGTTCGTTG
CAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCCTTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCGTGGAAGCCGTGGATGATAGAGTTGCTAACCGTTGGATGCATATCCATTGCCGCAAAGCAGGAGGAAGTGCATGTCCCGCGTCTGG
AAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGCTTATACCGATTCAATGCTTCAATATTTAGATCTATCTTCGAGTATTCCAGCCTTCTTACATGCTCGTGTAACGGAATTGCTGCTG
CAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAAAGCTCTGCAAGTTTATCTCTGTGGACAAGCAAAAGCTTCAGGATTGTTACGAAATTATGGAAGAGCTGGTAGTAGATCCGCCGTG
TCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAATAATGCAAATGTAGTAGTAATGTATAGGCAGCATGCCGATTCAGTCCGAACTGTCTGCAAGTGGATCTCTCCCTGCAGAAATTCAA
GCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCCTGATTCCAAGGCGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGTGTCCAAACACCTCATAAAAAAAATATTTCGTTCAAAATATTGTTTGTTTTCCTCTTCAAAGTTTTGACATCCCGATTCCCAACGC
GTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAAAAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTAAGAAGTGTTGCAGCTTCTCGTGAGATTCAATTGGACTTTGTAGTCTTCGAGGGTCAGTTGTCTGCCAGATTACGGTCAAAACGAT
TCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGGTTTCTCCGGTGTGTTGAAGTGGTCAAAGTCCGTGGACAGAATATTTAAGCGATAAGTAATGATGTGTCTATAGGCACAGACTTCATGGTCGAACGGTTTGCAGTGTGTCTTGATTTGTGCACCTC
AATATTTTACAAAGTATTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGAT
Intron 3 GTATGTAACA ... AATATCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.36 | 25 | 27 | 46 |
| A2 | 77.71 | 16.5 | 65 | 50 |
| A3 | 63.43 | 49 | 90 | 80 |
| A4 | 63.35 | 35 | 59 | 62 |
| A5 | 74.03 | 20 | 54 | 60 |
| A6 | 72.14 | 39 | 103 | 99 |
| A7 | 66.27 | 106.5 | 206.5 | 212 |
| A8 | 69.54 | 30 | 69 | 68 |
| A9 | 64.56 | 90 | 163 | 165 |
| A10 | 75.25 | 73.5 | 239 | 208 |
>TRINITY_DN122424_c0_g1_i10 from sample A1 / Example spliced isoformCGGATGCATTGAAGCGAGGGCGCCGAGCGGAGTTGTATGCCTATTACCCGCCTGTGACTTCAGTTAGCGTCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGGTACGATTTTGTTGGATCAAGCTAAAGAG
GGCTCCCGACCTCGATCCCCCGCAGCTTCACAACCGGGCTTCCTACACTTTCTTTCTTTTTTCGTTAAAGATTAGCTTCGGCATTCGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTC
AAGCGTACAGCCGAATCTCTGATTAGCAATAATGTGCAGCATCGTCGACAGTTTGTTGTGTAAAGAAGAAATTGGCGGAAGTCCGTGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGC
TAGCCAAGGAGACGAGCTTCATGCCCGGACATGAATATCTGAGGCGTTTGCAGTCCACCGACCTCCGACTTCGCGCCGTTCGTTGCAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCCTTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCG
TGGAAGCCGTGGATGATAGAGTTGCTAACCGTTGGATGCATATCCATTGCCGCAAAGCAGGAGGAAGTGCATGTCCCGCGTCTGGAAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGC
TTATACCGATTCAATGCTTCAATATTTAGATCTATCTTCGAGTATTCCAGCCTTCTTACATGCTCGTGTAACGGAATTGCTGCTGCAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAA
AGCTCTGCAAGTTTATCTCTGTGGACAAGCAAAAGCTTCAGGATTGTTACGAAATTATGGAAGAGCTGGTAGTAGATCCGCCGTGTCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAAT
AATGCAAATGTAGTAGTAATGTATAGGCAGCATGCCGATTCAGTCCGAACTGTCTGCAAGTGGATCTCTCCCTGCAGAAATTCAAGCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCCTGATTCCAAGGCGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGT
GTCCAAACACCTCATAAAAAAAATATTTCGTTCAAAATATTGTTTGTTTTCCTCTTCAAAGTTTTGACATCCCGATTCCCAACGCGTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAAAAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTA
AGAAGTGTTGCAGCTTCTCGTGAGATTCAATTGGACTTTGTAGTCTTCGAGGGTCAGTTGTCTGCCAGATTACGGTCAAAACGATTCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGGTTTCTCCGGTGTGTTGAAGTGGTCAAAGTCCGTGGACAGA
ATATTTAAGCGATAAGTAATGATGTGTCTATAGGCACAGACTTCATGGTCGAACGGTTTGCAGTGTGTCTTGATTTGTGCACCTCAATATTTTACAAAGTATTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGAT
>TRINITY_DN122424_c0_g1_i7 from sample A1 / Example unspliced isoform:CGGATGCATTGAAGCGAGGGCGCCGAGCGGAGTTGTATGCCTATTACCCGCCTGTGACTTCAGTTAGCGTCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGGTACGATTTTGTTgtatgtaacaggctac
ctacaaaatctctgcttgatttctctgcatttttcttgtcttcattagaccattagttcattattgttgatttttcattaccccgcgccaatatccaagGGATCAAGCTAAAGAGGGCTCCCGACCTCGATCCCCCGCAGCTTCACAACCGGGCTTCCTACACTTTCTTTCTTTTTTCGTTAAAGATTAGCTTCGGCATT
CGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTCAAGCGTACAGCCGAATCTCTGATTAGCAATAATGTGCAGCATCGTCGACAGTTTGTTGTGTAAAGAAGAAATTGGCGGAAGTCCG
TGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGCTAGCCAAGGAGACGAGCTTCATGCCCGGACATGAATATCTGAGGCGTTTGCAGTCCACCGACCTCCGACTTCGCGCCGTTCGTTG
CAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCCTTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCGTGGAAGCCGTGGATGATAGAGTTGCTAACCGTTGGATGCATATCCATTGCCGCAAAGCAGGAGGAAGTGCATGTCCCGCGTCTGG
AAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGCTTATACCGATTCAATGCTTCAATATTTAGATCTATCTTCGAGTATTCCAGCCTTCTTACATGCTCGTGTAACGGAATTGCTGCTG
CAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAAAGCTCTGCAAGTTTATCTCTGTGGACAAGCAAAAGCTTCAGGATTGTTACGAAATTATGGAAGAGCTGGTAGTAGATCCGCCGTG
TCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAATAATGCAAATGTAGTAGTAATGTATAGGCAGCATGCCGATTCAGTCCGAACTGTCTGCAAGTGGATCTCTCCCTGCAGAAATTCAA
GCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCATGATTCCAAGGAGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGTGTCCAAACACCTCATAACAAAAAATATTTCGTTCAAAATATTGTTTGTTTTCCTCTTCAAAGTTTTGACATCCCGATTCCCAACG
CGTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAAAAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTAAGAAGTGTTGCAGCTTCTCGTGAGATTCAATTGGACTTTGTAGTCTTCGAGGGTCAGTTGTCTGCCAGATTACGGTCAAAACGA
TTCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGAAGTGGTCAAAGTCCGTGGACAGAATATTTAAGCGATAAGTAATGATGTGTCTATAGGCACAGACTTCATGGTCGAACGGTTTGCAGTGTGTCTTGATTTGTGCACCTCAATATTTTACAAAGTA
TTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGAT
Intron 4 GTTGTTATAA ... AAAATCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.7 | 71 | 0 | 30 |
| A2 | 28.17 | 51 | 0 | 20 |
| A3 | 23.81 | 48 | 0 | 15 |
| A4 | 37.84 | 23 | 3 | 14 |
| A5 | 19.44 | 29 | 0 | 7 |
| A6 | 26.67 | 176 | 1 | 64 |
| A7 | 21.58 | 218 | 2 | 60 |
| A8 | 24.63 | 205 | 0 | 67 |
| A9 | 25.3 | 245 | 0 | 83 |
| A10 | 21.74 | 198 | 0 | 55 |
>TRINITY_DN44354_c0_g1_i3 from sample A7 / Example spliced isoformGCGCCGAGCGGAGTTGTATACCTATTACCCGCCTGTGACTTCAGTTAGCATCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGGGATCAAGCTAAAGAGGGCTCCCGACCTCGATCCCCCGCAGCTTCACA
ACCGGGCTTCCTACACTTTCTTTCTTTTTTCGTTAAAGATTAGCTTCGGCATTCGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTCAAGCGTACAGCCGAATCTCTGATTAGCAATAA
TGTGCAGCATCGTCGACAGTTTGTTGTGTAAAGAAGAAATTGGCGGAAGTCCGTGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGCTAGCCAAGGAGACGAGCTTCATGCCCGGACAT
GAATATCTGAGGCGTTTGCAGTCCACCGACCTCCGACTTCGCGCCGTTCGTTGCAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCATTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCGTGGAAGCCGTGGATGATAGAGTTGCTAACCGT
TGGATGCATATCCATTGCCGCAAAGCAGGAGGAAGTGCATGTCCCGCGTCTGGAAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGCTTATACCGATTCAATGCTTCAATATTTAGATC
TATCTTCGAGTATTCCAGCCTTCTTACATGCTCGTGTAACGGAATTGCTGCTGCAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAAAGCTCTGCAAGTTTATCTCTGTGGACAAGCAA
AAGCTTCAGGATTGTTACGAAATTATGGAAGAGCTGGTAGTAGATCCGCCGTGTCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAATAATGCAAATGTAGTAGTAATGTATAGGCAGCA
TGCCGATTCAGTCCGAACTGTCTGCAAGTGGATCTCTCCCTGCAGAAATTCAAGCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCCTGATTCCAAGGCGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGTGTCCAAACACCTCATAAAAAAAATATTTCGTT
CAAAATATTGTTTGTTTTCCTCTTCAAAGTTTTGACATCCCGATTCCCAACGCGTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAACAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTAAGAAGTGTTGCAGCTTCTCGTGAGATTCAATT
GGACTTTGTAGTCTTCGAGGGTCAGTTGTCTGCCAGATTACGGTCAAAACGATTCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGGTTTCTCCGGTGTGTTGAAGTGGTCAAAGTCCGTGGACAGAATATTTAAGCGATAAGTAATGATGTGTCTATA
TGCACAGACTTCATGGTCGAACGGTTTGCAGTGTGTCTTGATTTGTGCACCTCAATATTTTACAAAGTATTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGATATTATAAGTAAATAAATAATGCAAGTGGTGGACAAAATCATAA
>TRINITY_DN44354_c0_g1_i4 from sample A7 / Example unspliced isoform:GCAAGTTTATCTCTGTGGACAAGgttgttataattacgtaaattttaaagttttttcttgattatttataccttcaagagaactcatgtccattcttgtgaattatctttttttgtatagatctttccttaatttcccgggctgatttaagtcatttttttctgaaaatctcagCAAAAGCTTCAGGATTGTTACGAAAT
TATGGAAGAGCTGGTAGTAGATCCGCCGTGTCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAATAATGCAAATGTAGTAGTAATGTATAGGCAGCATGCCGATTCAGTCCGAACTGTCT
GCAAGTGGATCTCTCCCTGCAGAAATTCAAGCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATC
Intron 5 GTACGATTTT ... TCCCCCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.08 | 31.1 | 23.9 | 49.4 |
| A2 | 67.02 | 30.8 | 56 | 69.1 |
| A3 | 80.95 | 19.9 | 84.6 | 84 |
| A4 | 68.44 | 31.1 | 56.6 | 78 |
| A5 | 82.31 | 10.6 | 50 | 49 |
| A6 | 76.51 | 30.1 | 98 | 97.8 |
| A7 | 80.04 | 45.7 | 175.4 | 191.1 |
| A8 | 74.87 | 24.4 | 64 | 81 |
| A9 | 80.2 | 40.4 | 155.4 | 172 |
| A10 | 79.04 | 52.5 | 221.6 | 174.1 |
>TRINITY_DN122424_c0_g1_i2 from sample A1 / Example spliced isoformCGGATGCATTGAAGCGAGGGCGCCGAGCGGAGTTGTATGCCTATTACCCGCCTGTGACTTCAGTTAGCGTCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGCTTCACAACCGGGCTTCCTACACTTTCTT
TCTTTTTTCGTTAAAGATTAGCTTCGGCATTCGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTCAAGCGTACAGCCGAATCTCTGATTAGCAATAATGTGCAGCATCGTCGACAGTTT
GTTGTGTAAAGAAGAAATTGGCGGAAGTCCGTGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGCTAGCCAAGGAGACGAGCTTCATGCCCGGACATGAATATCTGAGGCGTTTGCAGT
CCACCGACCTCCGACTTCGCGCCGTTCGTTGCAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCCTTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCGTGGAAGCCGTGGATGATAGAGTTGCTAACCGTTGGATGCATATCCATTGCCGCA
AAGCAGGAGGAAGTGCATGTCCCGCGTCTGGAAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGCTTATACCGATTCAATGCTTCAATATTTAGATCTATCTTCGAGTATTCCAGCCTT
CTTACATGCTCGTGTAACGGAATTGCTGCTGCAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAAAGCTCTGCAAGTTTATCTCTGTGGACAAGCAAAAGCTTCAGGATTGTTACGAAA
TTATGGAAGAGCTGGTAGTAGATCCGCCGTGTCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAATAATGCAAATGTAGTAGTAATGTATAGGCAGCATGCCGATTCAGTCCGAACTGTC
TGCAAGTGGATCTCTCCCTGCAGAAATTCAAGCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCCTGATTCCAAGGCGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGTGTCCAAACACCTCATAAAAAAAATATTTCGTTCAAAATATTGTTTGTTTTCCTC
TTCAAAGTTTTGACATCCCGATTCCCAACGCGTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAAAAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTAAGAAGTGTTGCAGCTTCTCGTGAGATTCAATTGGACTTTGTAGTCTTCGAGGGT
CAGTTGTCTGCCAGATTACGGTCAAAACGATTCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGGTTTCTCCGGTGTGTTGAAGTGGTCAAAGTCCGTGGACAGAATATTTAAGCGATAAGTAATGATGTGTCTATAGGCACAGACTTCATGGTCGAAC
GGTTTGCAGTGTGTCTTGATTTGTGCACCTCAATATTTTACAAAGTATTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGAT
>TRINITY_DN122424_c0_g1_i7 from sample A1 / Example unspliced isoform:CGGATGCATTGAAGCGAGGGCGCCGAGCGGAGTTGTATGCCTATTACCCGCCTGTGACTTCAGTTAGCGTCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGgtacgattttgttgtatgtaacaggctac
ctacaaaatctctgcttgatttctctgcatttttcttgtcttcattagaccattagttcattattgttgatttttcattaccccgcgccaatatccaagggatcaagctaaagagggctcccgacctcgatcccccgcagCTTCACAACCGGGCTTCCTACACTTTCTTTCTTTTTTCGTTAAAGATTAGCTTCGGCATT
CGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTCAAGCGTACAGCCGAATCTCTGATTAGCAATAATGTGCAGCATCGTCGACAGTTTGTTGTGTAAAGAAGAAATTGGCGGAAGTCCG
TGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGCTAGCCAAGGAGACGAGCTTCATGCCCGGACATGAATATCTGAGGCGTTTGCAGTCCACCGACCTCCGACTTCGCGCCGTTCGTTG
CAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCCTTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCGTGGAAGCCGTGGATGATAGAGTTGCTAACCGTTGGATGCATATCCATTGCCGCAAAGCAGGAGGAAGTGCATGTCCCGCGTCTGG
AAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGCTTATACCGATTCAATGCTTCAATATTTAGATCTATCTTCGAGTATTCCAGCCTTCTTACATGCTCGTGTAACGGAATTGCTGCTG
CAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAAAGCTCTGCAAGTTTATCTCTGTGGACAAGCAAAAGCTTCAGGATTGTTACGAAATTATGGAAGAGCTGGTAGTAGATCCGCCGTG
TCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAATAATGCAAATGTAGTAGTAATGTATAGGCAGCATGCCGATTCAGTCCGAACTGTCTGCAAGTGGATCTCTCCCTGCAGAAATTCAA
GCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCATGATTCCAAGGAGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGTGTCCAAACACCTCATAACAAAAAATATTTCGTTCAAAATATTGTTTGTTTTCCTCTTCAAAGTTTTGACATCCCGATTCCCAACG
CGTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAAAAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTAAGAAGTGTTGCAGCTTCTCGTGAGATTCAATTGGACTTTGTAGTCTTCGAGGGTCAGTTGTCTGCCAGATTACGGTCAAAACGA
TTCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGAAGTGGTCAAAGTCCGTGGACAGAATATTTAAGCGATAAGTAATGATGTGTCTATAGGCACAGACTTCATGGTCGAACGGTTTGCAGTGTGTCTTGATTTGTGCACCTCAATATTTTACAAAGTA
TTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGAT
Intron 6 GTACGATTTT ... TCCCCCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.01 | 31.3 | 21 | 47 |
| A2 | 62.2 | 31 | 12.7 | 51 |
| A3 | 78.84 | 19.3 | 22.3 | 72 |
| A4 | 68.14 | 31.3 | 21.3 | 67 |
| A5 | 71.79 | 11 | 10 | 28 |
| A6 | 72.22 | 30 | 23 | 78 |
| A7 | 78.22 | 45.7 | 63.7 | 164 |
| A8 | 67.95 | 25 | 14 | 53 |
| A9 | 76.97 | 41 | 40.3 | 137 |
| A10 | 71.92 | 52.3 | 38.3 | 134 |
>TRINITY_DN122424_c0_g1_i2 from sample A1 / Example spliced isoformCGGATGCATTGAAGCGAGGGCGCCGAGCGGAGTTGTATGCCTATTACCCGCCTGTGACTTCAGTTAGCGTCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGCTTCACAACCGGGCTTCCTACACTTTCTT
TCTTTTTTCGTTAAAGATTAGCTTCGGCATTCGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTCAAGCGTACAGCCGAATCTCTGATTAGCAATAATGTGCAGCATCGTCGACAGTTT
GTTGTGTAAAGAAGAAATTGGCGGAAGTCCGTGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGCTAGCCAAGGAGACGAGCTTCATGCCCGGACATGAATATCTGAGGCGTTTGCAGT
CCACCGACCTCCGACTTCGCGCCGTTCGTTGCAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCCTTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCGTGGAAGCCGTGGATGATAGAGTTGCTAACCGTTGGATGCATATCCATTGCCGCA
AAGCAGGAGGAAGTGCATGTCCCGCGTCTGGAAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGCTTATACCGATTCAATGCTTCAATATTTAGATCTATCTTCGAGTATTCCAGCCTT
CTTACATGCTCGTGTAACGGAATTGCTGCTGCAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAAAGCTCTGCAAGTTTATCTCTGTGGACAAGCAAAAGCTTCAGGATTGTTACGAAA
TTATGGAAGAGCTGGTAGTAGATCCGCCGTGTCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAATAATGCAAATGTAGTAGTAATGTATAGGCAGCATGCCGATTCAGTCCGAACTGTC
TGCAAGTGGATCTCTCCCTGCAGAAATTCAAGCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCCTGATTCCAAGGCGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGTGTCCAAACACCTCATAAAAAAAATATTTCGTTCAAAATATTGTTTGTTTTCCTC
TTCAAAGTTTTGACATCCCGATTCCCAACGCGTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAAAAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTAAGAAGTGTTGCAGCTTCTCGTGAGATTCAATTGGACTTTGTAGTCTTCGAGGGT
CAGTTGTCTGCCAGATTACGGTCAAAACGATTCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGGTTTCTCCGGTGTGTTGAAGTGGTCAAAGTCCGTGGACAGAATATTTAAGCGATAAGTAATGATGTGTCTATAGGCACAGACTTCATGGTCGAAC
GGTTTGCAGTGTGTCTTGATTTGTGCACCTCAATATTTTACAAAGTATTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGAT
>TRINITY_DN122424_c0_g1_i10 from sample A1 / Example unspliced isoform:CGGATGCATTGAAGCGAGGGCGCCGAGCGGAGTTGTATGCCTATTACCCGCCTGTGACTTCAGTTAGCGTCTGAGAAGCCCGGGCGGGCTTTATTATTTAACGGCCAACAGAGAGGGACGATTGGAATTTGGAATTTGGCGGCAGGGATTCAGCGGAGATGCAATTGCACGgtacgattttgttggatcaagctaaagag
ggctcccgacctcgatcccccgcagCTTCACAACCGGGCTTCCTACACTTTCTTTCTTTTTTCGTTAAAGATTAGCTTCGGCATTCGGTCTGCTATCGCCAGAGGAGCCAGGACGTACTGAGCGTCTGCCATTGTTGCATTCAATTGATAATTCGTTAGCGTTGGGGTTCGTTCAAGGAAGAAAAACCCGAGGCAACTTC
AAGCGTACAGCCGAATCTCTGATTAGCAATAATGTGCAGCATCGTCGACAGTTTGTTGTGTAAAGAAGAAATTGGCGGAAGTCCGTGGACAGAAGAAGATGGAGGTTGCATCGGTCCGTTGGATTCGAACGAAGAAGCGCTTCGTAGTACGTATTCGCCTTCAGAATTCGTGGAAGATGAGGAAACGCTTGGGATTTTGC
TAGCCAAGGAGACGAGCTTCATGCCCGGACATGAATATCTGAGGCGTTTGCAGTCCACCGACCTCCGACTTCGCGCCGTTCGTTGCAGGGCCGTGCAATGGATGCTGAAGGTCGGTGTCCATTTTAGCTTCAATGCTCACACCCTTAGCTCGGCAGCTAATTATTTGGACCGGTTTCTAGCAATGAGCCTCGACAAGCCG
TGGAAGCCGTGGATGATAGAGTTGCTAACCGTTGGATGCATATCCATTGCCGCAAAGCAGGAGGAAGTGCATGTCCCGCGTCTGGAAGATTTACAGGTTGAAGGATTGGAGTACACCTTCAATTCAACGGCAATACGACGCATGGAGTTTGCAATCTTAAACACGCTCGAATGGCGAATGAATTCCGTTACAGCTTTCGC
TTATACCGATTCAATGCTTCAATATTTAGATCTATCTTCGAGTATTCCAGCCTTCTTACATGCTCGTGTAACGGAATTGCTGCTGCAGTGTCTTCCCGTAGTCGAGTTTCTGGAATATAGGCCTTCAGTGCTAGCAACGTCATCCCTCTACTGTGCATTGGACGAATTGGTCCCTATACAGGCAGATTTGCACAAGGCAA
AGCTCTGCAAGTTTATCTCTGTGGACAAGCAAAAGCTTCAGGATTGTTACGAAATTATGGAAGAGCTGGTAGTAGATCCGCCGTGTCCGACGGTGTCCTCAGACGCCAAGTCCCCAGCGAGCCCCGTAACAATAACAGAAATTGCAGCCAATGGAAATGTAGGATTACACAGGGGCAATGACATATTGAAATACATAAAT
AATGCAAATGTAGTAGTAATGTATAGGCAGCATGCCGATTCAGTCCGAACTGTCTGCAAGTGGATCTCTCCCTGCAGAAATTCAAGCAAACGAATCAAACTGGCGCCGGAATCTCCGCATGAATTTCCATCCTGATTCCAAGGCGATTCAGCAGAGAAGGGGTTGCACATCAGAACAGTATTATCCTGTAATGCTCCTGT
GTCCAAACACCTCATAAAAAAAATATTTCGTTCAAAATATTGTTTGTTTTCCTCTTCAAAGTTTTGACATCCCGATTCCCAACGCGTGCAATAATCACCAGGCCACGTGATTGCACGAAGCTCTGGTGAAAAGGCAAAAGAATAAGCCCCGGTTTTGCTGATGTACATGGCTACGGAATGCCATCACATGCTTTTCTGTA
AGAAGTGTTGCAGCTTCTCGTGAGATTCAATTGGACTTTGTAGTCTTCGAGGGTCAGTTGTCTGCCAGATTACGGTCAAAACGATTCGTCTCCATTTCCATTGCCACCGACGCGGTGGTACATTAAGGGCTACAATAAGCTCTTCTTTCACAGTTTAAGGTTTCTCCGGTGTGTTGAAGTGGTCAAAGTCCGTGGACAGA
ATATTTAAGCGATAAGTAATGATGTGTCTATAGGCACAGACTTCATGGTCGAACGGTTTGCAGTGTGTCTTGATTTGTGCACCTCAATATTTTACAAAGTATTGTTTTTGGAAGGTTATTCTTTTCCATTGATCCTTGGAACTTTGTTCAAGAT