sp|Q9M9G7|CAPZB_ARATH ----> Probable F-actin-capping protein subunit beta
Intron 1 GTCCTTTACT ... ATGTTGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.24 | 72 | 15 | 15 |
| A2 | 15.12 | 73 | 10 | 16 |
| A3 | 19.15 | 76 | 19 | 17 |
| A4 | 14.13 | 79 | 17 | 9 |
| A5 | 18.18 | 45 | 7 | 13 |
| A6 | 13.95 | 367 | 51 | 68 |
| A7 | 15.19 | 335 | 57 | 63 |
| A8 | 15.74 | 257 | 40 | 56 |
| A9 | 15.72 | 343 | 58 | 70 |
| A10 | 16.09 | 292 | 48 | 64 |
>TRINITY_DN104099_c0_g2_i2 from sample A3 / Example spliced isoformACCGGAGAAGCATACAATTGTTGGTGCGTTGCTTTCGAAAGCAAGCCACATTGTCGAGCCAACGACAAAAAGATAGGCCTTAGCTACATGTGGCCCGTTTGTTTCGAAGGCTCCACGGGACTAGTCAACTTTTTCATCAATACAAAGTCAGGTGACCCAGGTTCCAAACCCCGCCAAGTACCTGTAAACAACCGCCTGCG
CGGGAACGGGGAAGCCTCGATTCGTCACCGAGTTTTTTACAGACGGTTTTGCTTAAATAGTTTTTGATCCGCTACCTGAGCATTGTCGACAGAAATTATTCCGAAAGAATTGGCGGCATTGAAGCTCGAGTGAGCGTGTTGGAATGGAGGCAGCGATGGATCTGATGCGAAGAATGCCGCCTTCTCTGTCGCAGAACGCT
TTGACGTCTTTGCTAGCACTGTTGCCTGAGCACTCGCCCGAGCTCCTGTCTCGCGTAGATCAACCTCTTCAGGTGGCAATTGATGAGGAGTCAGGGAAGGATTTTTTGCTGTGCGATTACAATCGAGATGGTGATTCATACAGGTAAGTTTCATGAAATGGTATGTCATTCTGGTTGCATTCCAGTTAATATTTTCATGC
ACGATGGCCTGTGGCCATATATAGGAGAAAGAGATACTCATGTTGAGAGTTGAATATTTAATGATTACCCAATATGGTAAAGACTTTGATCTGCAAAAGCAATGGATTTTTAGTTTAAGGATCAATGGCAACCAGTAGGATGAAGGAAGAATCGGAATTGGGACTTATGCAATAATCCATACCTTGTTGCTCCGCAATTT
ATAGAAAAAACTTGCTCAATGAAGTATTGAAATATGTTTATGATGATGACGCCACTGTGTTATAGGTCTCCATGGTCAAACAAGTACTATCCACCATTGGAAGATGGAGCGCAGCCATCAATTGATTTACGAAAGCTTGAAGTGGAAGCAAATGATATTTTTGCCATTTATCGTGACCAGTGAGGTATTATGAAGGTGGA
ATCTCTTCTGTATACATGTGGGAACCGGATGAAGGAGAAGGCTTCGCAGCATGTTTTTTGATAAAGAAGGATGGTTCGCAGACAGGGCAAGGGCGGAGGGGTAGCTTGCAGCAAGGTGTATGGGATGCTATCCATGTTGTTGAAGTAGGAGTTGAAGACGAGGGCACAGCTCATTACTGTTTGACCAGTACTGTCATGCT
TTCCATGACTACAAGTGATAAACCATCAGGCACCTTCAAGTTGTCAGGATCAATCACTCGTCAGATGGCAGCTGATATGTCAGTTGCTGATGGTCATTTGAGCAACATGGGACGGATGATTGAAGAAATGGAGAGCAAGTTGAGAAATGCCCTGGACCAGGTATATTTTGGGAAAACAAGGGAGATGGTGTTTACATTGC
GACAGCCAATTGGTGTACTGACCTCAACATCAGCGACAGGGCAGAGCTTGCAGAAAAGTATTGTGGGTGACATGCATCGTTGATTATAGCAGGAGACACATTTGCATTGGTTCGAAAATATTCTTTTTGCTAATTAGCAGTTGTGAATATAATGGTGTTAATAGATTATGATTTAATTCACATGATATTTTATTACTGTA
ATGCATGTATTTGCATTAGATACAGTAAATTCAATTTTTTTGTTTGGAATTAGCAGTGTAGCAGTTCACGTCGCTGAACACTAGATAAGGAGATATTTTTATTGTCTGAAAATCTTATAACTGCCACACATTTAGTTAGATTTCCTCCTCCTTTCCCTCCTTTTTGATTGAAGGGGGTTGGGAGTGGGCTTGGGTTGGGT
TTCATGGTATTTTTCCTATGTATTATTTGCTTGGGGTGAGTCATTGTGAAATAGTCTTTGGTGTTTGAACTTTTTGCTGAGTGATGTTTTGTTTCCTTTCCCCTTTAATTTCAATGGTTACCTCGTTGTGACTTTAATCATTGCTTTGACCCATTTCTAATGCAAC
>TRINITY_DN104099_c0_g2_i4 from sample A3 / Example unspliced isoform:ACCGGAGAAGCATACAATTGTTGGTGCGTTGCTTTCGAAAGCAAGCCACATTGTCGAGCCAACGACAAAAAGATAGGCCTTAGCTACATGTGGCCCGTTTGTTTCGAAGGCTCCACGGGACTAGTCAACTTTTTCATCAATACAAAGTCAGGTGACCCAGGTTCCAAACCCCGCCAAGTACCTGTAAACAACCGCCTGCG
CGGGAACGGGGAAGCCTCGATTCGTCACCGAGTTTTTTACAGACGGTTTTGCTTAAATAGTTTTTGATCCGCTACCTGAGCATTGTCGACAGAAATTATTCCGAAAGAATTGGCGGCATTGAAGCTCGAGTGAGCGTGTTGGAATGGAGGCAGCGATGGATCTGATGCGAAGAATGCCGCCTTCTCTGTCGCAGAACGCT
TTGACGTCTTTGCTAGCACTGTTGCCTGAGCACTCGCCCGAGCTCCTGTCTCGCGTAGATCAACCTCTTCAGGTGGCAATTGATGAGGAGTCAGGGAAGGATTTTTTGCTGTGCGATTACAATCGAGATGGTGATTCATACAGGTAAGTTTCATGAAATGGTATGTCATTCTGGTTGCATTCCAGTTAATATTTTCATGC
ACGATGGCCTGTGGCCATATATAGGAGAAAGAGATACTCATGTTGAGAGTTGAATATTTAATGATTACCCAATATGGTAAAGACTTTGATCTGCAAAAGCAATGGATTTTTAGTTTAAGGATCAATGGCAACCAGTAGGATGAAGGAAGAATCGGAATTGGGACTTATGCAATAATCCATACCTTGTTGCTCCGCAATTT
ATAGAAAAAACTTGCTCAATGAAGTATTGAAATATGTTTATGATGATGACGCCACTGTGTTATAGGTCTCCATGGTCAAACAAGTACTATCCACCATTGGAAGATGGAGCGCAGCCATCAATTGATTTACGAAAGCTTGAAGTGGAAGCAAATGATATTTTTGCCATTTATCGTGACCAGTGAGgtcctttacttacctt
gtctttggcaatgctttcttttgttgattacctaatccatctttggtctaaaggacctcccaatcaccacaggttcaagtataagtggttgctgatgaagtaatagcaatcgtttaatgtgctcatgttgatagGTATTATGAAGGTGGAATCTCTTCTGTATACATGTGGGAACCGGATGAAGGAGAAGGCTTCGCAGC
ATGTTTTTTGATAAAGAAGGATGGTTCGCAGACAGGGCAAGGGCGGAGGGGTAGCTTGCAGCAAGGTGTATGGGATGCTATCCATGTTGTTGAAGTAGGAGTTGAAGACGAGGGCACAGCTCATTACTGTTTGACCAGTACTGTCATGCTTTCCATGACTACAAGTGATAAACCATCAGGCACCTTCAAGTTGTCAGGAT
CAATCACTCGTCAGATGGCAGCTGATATGTCAGTTGCTGATGGTCATTTGAGCAACATGGGACGGATGATTGAAGAAATGGAGAGCAAGTTGAGAAATGCCCTGGACCAGGT
Intron 2 GTAAGTTTCA ... TGTGTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.49 | 121 | 22.6 | 25.7 |
| A2 | 11.78 | 110 | 14.5 | 14.8 |
| A3 | 16.05 | 132 | 12.4 | 25.4 |
| A4 | 14.79 | 149 | 15.9 | 26 |
| A5 | 16.76 | 82 | 14 | 16.6 |
| A6 | 12.58 | 484 | 40 | 70.2 |
| A7 | 12.7 | 438 | 33.6 | 64.4 |
| A8 | 16.08 | 277 | 17.7 | 53.7 |
| A9 | 15.18 | 380 | 34.4 | 69 |
| A10 | 13.47 | 389 | 30.3 | 61.2 |
>TRINITY_DN111818_c0_g2_i4 from sample A1 / Example spliced isoformTGCGTTGCTTTCGAAAGCAAGCCACATTGTCGAGCCAACGACAAAAAGATAGGCCTTAGCTACATGTGGCCCGTTTGTTTCGAAGGCTCCACGGGACTAGTCAACTTTTTCATCAATACAAAGTCAGGTGACCCAGGTTCCAAACCCCGCCAAGTACCTGTAAACAACCGCCTGCGCGGGAACGGGGAAGCCTCGATTCG
TCACCGAGTTTTTTACAGACGGTTTTGCTTAAATAGTTTTTGATCCGCTACCTGAGCATTGTCGACAGAAATTATTCCGAAAGAATTGGCGGCATTGAAGCTCGAGTGAGCGTGTTGGAATGGAGGCAGCGATGGATCTGATGCGAAGAATGCCGCCTTCTCTGTCGCAGAACGCTTTGACGTCTTTGCTAGCACTGTTG
CCTGAGCACTCGCCCGAGCTCCTGTCTCGCGTAGATCAACCTCTTCAGGTGGCAATTGATGAGGAGTCAGGGAAGGATTTTTTGCTGTGCGATTACAATCGAGATGGTGATTCATACAGGTCTCCATGGTCAAACAAGTACTATCCACCATTGGAAGATGGAGCGCAGCCATCAATTGATTTACGAAAGCTTGAAGTGGA
AGCAAATGATATTTTTGCCATTTATCGTGACCAGTATTATGAAGGTGGAATCTCTTCTGTATACATGTGGGAACCGGATGAAGGAGAAGGCTTCGCAGCATGTTTTTTGATAAAGAAGGATGGTTCGCAGACAGGGCAAGGGCGGAGGGGTAGCTTGCAGCAAGGTGTATGGGATGCTATCCATGTTGTTGAAGTAGGAG
TTGAAGACGAGGGCACAGCTCATTACTGTTTGACCAGTACTGTCATGCTTTCCATGACTACAAGTGATAAACCATCAGGCACCTTCAAGTTGTCAGGATCAATCACTCGTCAGATGGCAGCTGATATGTCAGTTGCTGATGGTCATTTGAGCAACATGGGACGGATGATTGAAGAAATGGAGAGCAAGTTGAGAAATGCC
CTGGACCAGGTATATTTTGGGAAAACAAGGGAGATGGTGTTTACATTGCGACAGCCAATTGGTGTACTGACCTCAACATCAGCGACAGGGCAGAGCTTGCAGAAAAGTATTGTGGGTGACATGCATCGTTGATTATAGCAGGAGACACATTTGCATTGGTTCGAAAATATTCTTTTTGCTAATTAGCAGTTGTGAATATA
ATGGTGTTAATAGATTATGATTTAATTCACATGATATTTTATTACTGTAATGCATGTATTTGCATTAGATACAGTAAATTCAATTTTTTTGTTTGGAATTAGCAGTGTAGCAGTTCACGTCGCTGAACACTAGATAAGGAGATATTTTTATTGTCTGAAAATCTTATAACTGCCACACATTTAGTTAGATTTCCTCCTCC
TTTCCCTCCTTTTTGATTGAAGGGGGTTGGGAGTGGGCTTGGGTTGGGTTTCATGGTATTTTTCCTATGTATTATTTGCTTGGGGTGAGTCATTGTGAAATAGTCTTTGGTGTTTGAACTTTTTGCTGAGTGATGTTTTGTTTCCTTTCCCC
>TRINITY_DN111818_c0_g2_i3 from sample A1 / Example unspliced isoform:TGCGTTGCTTTCGAAAGCAAGCCACATTGTCGAGCCAACGACAAAAAGATAGGCCTTAGCTACATGTGGCCCGTTTGTTTCGAAGGCTCCACGGGACTAGTCAACTTTTTCATCAATACAAAGTCAGGTGACCCAGGTTCCAAACCCCGCCAAGTACCTGTAAACAACCGCCTGCGCGGGAACGGGGAAGCCTCGATTCG
TCACCGAGTTTTTTACAGACGGTTTTGCTTAAATAGTTTTTGATCCGCTACCTGAGCATTGTCGACAGAAATTATTCCGAAAGAATTGGCGGCATTGAAGCTCGAGTGAGCGTGTTGGAATGGAGGCAGCGATGGATCTGATGCGAAGAATGCCGCCTTCTCTGTCGCAGAACGCTTTGACGTCTTTGCTAGCACTGTTG
CCTGAGCACTCGCCCGAGCTCCTGTCTCGCGTAGATCAACCTCTTCAGGTGGCAATTGATGAGGAGTCAGGGAAGGATTTTTTGCTGTGCGATTACAATCGAGATGGTGATTCATACAGgtaagtttcatgaaatggtatgtcattctggttgcattccagttaatattttcatgcacgatggcctgtggccatatatag
gagaaagagatactcatgttgagagttgaatatttaatgattacccaatatggtaaagactttgatctgcaaaagcaatggatttttagtttaaggatcaatggcaaccagtaggatgaaggaagaatcggaattgggacttatgcaataatccataccttgttgctccgcaatttatagaaaaaacttgctcaatgaag
tattgaaatatgtttatgatgatgacgccactgtgttatagGTCTCCATGGTCAAACAAGTACTATCCACCATTGGAAGATGGAGCGCAGCCATCAATTGATTTACGAAAGCTTGAAGTGGAAGCAAATGATATTTTTGCCATTTATCGTGACCAGTGAGGTCCTTTACTTACCTTGTCTTTGGCAATGCTTTCTTTTGT
TGATTACCTAATCCATCTTTGGTCTAAAGGACCTCCCAATCACCACAGGTTCAAGTATAAGTGGTTGCTGATGAAGTAATAGCAATCGTTTAATGTGCTCATGTTGATA
Intron 3 GTGAGTGTTT ... CCCTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.87 | 157 | 1 | 41.4 |
| A2 | 23.83 | 147 | 8 | 46 |
| A3 | 21.26 | 163 | 1 | 44 |
| A4 | 19.27 | 155 | 5 | 37 |
| A5 | 29.05 | 86 | 2 | 35.2 |
| A6 | 22.64 | 951.2 | 1 | 278.4 |
| A7 | 23.22 | 724.8 | 0 | 219.2 |
| A8 | 21.85 | 679.4 | 1 | 190 |
| A9 | 20.46 | 696.8 | 3 | 179.2 |
| A10 | 21.18 | 678 | 0 | 182.2 |
>TRINITY_DN108298_c1_g1_i2 from sample A2 / Example spliced isoformATACAATTGTTGGTGCGTTGCTTTCGAAAGCAAGCCACATTGTCGAGCCAACGACAAAAAGATAGGCCTTAGCTACATGTGGCCCGTTTGTTTCGAAGGCTCCACGGGACTAGTCAACTTTTTCATCAATACAAAGTCAGGTGACCCAGGTTCCAAACCCCGCCAAGTACCTGTAAACAACCGCCTGCGCGGGAACGGGG
AAGCCTCGATTCGTCACCGAGTTTTTTACAGACGGTTTTGCTTAAATAGTTTTTGATCCGCTACCTGAGCATTGTCGACAGAAATTATTCCGAAAGAATTGGCGGCATTGAAGCTCGAGTGAGCGTGTTGGAATGGAGGCAGCGATGGATCTGATGCGAAGAATGCCGCCTTCTCTGTCGCAGAACGCTTTGACGTCTTT
GCTAGCACTGTTGCCTGAGCACTCGCCCGAGCTCCTGTCTCGCGTAGATCAACCTCTTCAGGTGGCAATTGATGAGGAGTCAGGGAAGGATTTTTTGCTGTGCGATTACAATCGAGATGGTGATTCATACAGGTCTCCATGGTCAAACAAGTACTATCCACCATTGGAAGATGGAGCGCAGCCATCAATTGATTTACGAA
AGCTTGAAGTGGAAGCAAATGATATTTTTGCCATTTATCGTGACCAGTATTATGAAGGTGGAATCTCTTCTGTATACATGTGGGAACCGGATGAAGGAGAAGGCTTCGCAGCATGTTTTTTGATAAAGAAGGATGGTTCGCAGACAGGGCAAGGGCGGAGGGGTAGCTTGCAGCAAGGTGTATGGGATGCTATCCATGTT
GTTGAAGTAGGAGTTGAAGACGAGGGCACAGCTCATTACTGTTTGACCAGTACTGTCATGCTTTCCATGACTACAAGTGATAAACCATCAGGCACCTTCAAGTTGTCAGGATCAATCACTCGTCAGATGGCAGCTGATATGTCAGTTGCTGATGGTCATTTGAGCAACATGGGACGGATGATTGAAGAAATGGAGAGCAA
GTTGAGAAATGCCCTGGACCAGGTATATTTTGGGAAAACAAGGGAGATGGTGTTTACATTGCGACAGCCAATTGGTGTACTGACCTCAACATCAGCGACAGGGCAGAGCTTGCAGAAAAGTATTGTGGGTGACATGCATCGTTGATTATAGCAGGAGACACATTTGCATTGGTTCGAAAATATTCTTTTTGCTAATTAGC
AGTTGTGAATATAATGGTGTTAATAGATTATGATTTAATTCACATGATATTTTATTACTGTAATGCATGTATTTGCATTAGATACAGTAAATTCAATTTTTTTGTTTGGAATTAGCAGTGTAGCAGTTCACGTCGCTGAACACTAGATAAGGAGATATTTTTATTGTCTGAAAATCTTATAACTGCCACACATTTAGTTA
GATTTCCTCCTCCTTTCCCTCCTTTTTGATTGAAGGGGGTTGGGAGTGGGCTTGGGTTGGGTTTCATGGTATTTTTCCTATGTATTATTTGCTTGGGGTGAGTCATTGTGAAATAGTCTTTGGTGTTTGAACTTTTTGCTGAGTGATGTTTTGTTTCCTTTCCCCTTTAATTTCAATGGTTACCTCGTTGTGACTTTAAT
CATTGCTTTGACCCATTTCTAATGTAACAGAACTTGTGTCTCTAAGTATACTACTAATTGCAAGCAAAACTATAAGACCTCGAGCTTCCTTGTGTGGAAGCACATAATTGGCAAGCAAAGTCTTATAAGATTATTCTAACTATTTTTTCACTTGCATTTAGCCTTCAAGAACAGAGATACTTCTACAAAGCAC
>TRINITY_DN108298_c1_g1_i4 from sample A2 / Example unspliced isoform:GTTTCTTAGATATTTCCTGGGAAAGACTACATAGTTTCCATCAGAATATATTCTCTTTATTTTCCTTGTCACTTTTTTTCAACTCTGGACTAAAAGTTGATTTGGGGGATGAAAAATGAAGATGGTTCGCAGACAGGGCAAGGGCGGAGGGGTAGCTTGCAGCAAGGTGTATGGGATGCTATCCATGTTGTTGAAgtgag
tgttttatatattgtttttaaagtttaatatttgcaatagagctcaagtagaacagcaattttccttctcttgcagaatgactgtttctgcagaaatactatatagtatagagactttgtgaggaggcattatattgtgtcccttttcagGTAGGAGTTGAAGACGAGGGCACAGCTCATTACTGTTTGACCAGTACTGT
CATGCTTTCCATGACTACAAGTGATAAACCATCAGGCACCTTCAAGTTGTCAGGATCAATCACTCGTCAGATGGCAGCTGATATGTCAGTTGCTGATGGTCATTTGAGCAACATGGGACGGATGATTGAAGAAATGGAGAGCAAGTTGAGAAATGCCCTGGACCAGGTATATTTTGGGAAAACAAGGGAGATGGTGTTTA
CATTGCGACAGCCAATTGGTGTACTGACCTCAACATCAGCGACAGGGCAGAGCTTGCAGAAAAGTATTGTGGGTGACATGCATCGTTGATTATAGCAGGAGACACATTTGCATTGGTTCGAAAATATTCTTTTTGCTAATTAGCAGTTGTGAATATAATGGTGTTAATAGATTATGATTTAATTCACATGATATTTTATT
ACTGTAATGCATGTATTTGCATTAGATACAGTAAATTCAATTTTTTTGTTTGGAATTAGCAGTGTAGCAGTTCACGTCGCTGAACACTAGATAAGGAGATATTTTTATTGTCTGAAAATCTTATAACTGCCACACATTTAGTTAGATTTCCTCCTCCTTTCCCTCCTTTTTGATTGAAGGGGGTTGGGAGTGGGCTTGGG
TTGGGTTTCATGGTATTTTTCCTATGTATTATTTGCTTGGGGTGAGTCATTGTGAAATAGTCTTTGGTGTTTGAACTTTTTGCTGAGTGATGTTTTGTTTCCTTTCCCCTTTAATTTCAATGGTTACCTCGTTGTGACTTTAATCATTGCTTTGACCCATTTCTAATGTAACAGAACTTGTGTCTCTAAGTATACTACTA
ATTGCAAGCAAAACTATAAGACCTCGAGCTTCCTTGTGTGGAAGCACATAATTGGCAAGCAAAGTCTTATAAGATTATTCTAACTATTTTTTCACTTGCATTTAGCCTTCAAGAACAGAGATACTTCTACAAAGCAC
Intron 4 GTGAGGTCCT ... ATGTTGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.78 | 74 | 17 | 15 |
| A2 | 16.13 | 78 | 14 | 16 |
| A3 | 19.8 | 79 | 22 | 17 |
| A4 | 15.03 | 82 | 20 | 9 |
| A5 | 20 | 50 | 12 | 13 |
| A6 | 14.76 | 387 | 66 | 68 |
| A7 | 15.62 | 343 | 64 | 63 |
| A8 | 16.72 | 269 | 52 | 56 |
| A9 | 15.65 | 353 | 61 | 70 |
| A10 | 16.67 | 305 | 58 | 64 |
>TRINITY_DN104099_c0_g2_i1 from sample A3 / Example spliced isoformACCGGAGAAGCATACAATTGTTGGTGCGTTGCTTTCGAAAGCAAGCCACATTGTCGAGCCAACGACAAAAAGATAGGCCTTAGCTACATGTGGCCCGTTTGTTTCGAAGGCTCCACGGGACTAGTCAACTTTTTCATCAATACAAAGTCAGGTGACCCAGGTTCCAAACCCCGCCAAGTACCTGTAAACAACCGCCTGCG
CGGGAACGGGGAAGCCTCGATTCGTCACCGAGTTTTTTACAGACGGTTTTGCTTAAATAGTTTTTGATCCGCTACCTGAGCATTGTCGACAGAAATTATTCCGAAAGAATTGGCGGCATTGAAGCTCGAGTGAGCGTGTTGGAATGGAGGCAGCGATGGATCTGATGCGAAGAATGCCGCCTTCTCTGTCGCAGAACGCT
TTGACGTCTTTGCTAGCACTGTTGCCTGAGCACTCGCCCGAGCTCCTGTCTCGCGTAGATCAACCTCTTCAGGTGGCAATTGATGAGGAGTCAGGGAAGGATTTTTTGCTGTGCGATTACAATCGAGATGGTGATTCATACAGGTCTCCATGGTCAAACAAGTACTATCCACCATTGGAAGATGGAGCGCAGCCATCAAT
TGATTTACGAAAGCTTGAAGTGGAAGCAAATGATATTTTTGCCATTTATCGTGACCAGTATTATGAAGGTGGAATCTCTTCTGTATACATGTGGGAACCGGATGAAGGAGAAGGCTTCGCAGCATGTTTTTTGATAAAGAAGGATGGTTCGCAGACAGGGCAAGGGCGGAGGGGTAGCTTGCAGCAAGGTGTATGGGATG
CTATCCATGTTGTTGAAGTAGGAGTTGAAGACGAGGGCACAGCTCATTACTGTTTGACCAGTACTGTCATGCTTTCCATGACTACAAGTGATAAACCATCAGGCACCTTCAAGTTGTCAGGATCAATCACTCGTCAGATGGCAGCTGATATGTCAGTTGCTGATGGTCATTTGAGCAACATGGGACGGATGATTGAAGAA
ATGGAGAGCAAGTTGAGAAATGCCCTGGACCAGGTATATTTTGGGAAAACAAGGGAGATGGTGTTTACATTGCGACAGCCAATTGGTGTACTGACCTCAACATCAGCGACAGGGCAGAGCTTGCAGAAAAGTATTGTGGGTGACATGCATCGTTGATTATAGCAGGAGACACATTTGCATTGGTTCGAAAATATTCTTTT
TGCTAATTAGCAGTTGTGAATATAATGGTGTTAATAGATTATGATTTAATTCACATGATATTTTATTACTGTAATGCATGTATTTGCATTAGATACAGTAAATTCAATTTTTTTGTTTGGAATTAGCAGTGTAGCAGTTCACGTCGCTGAACACTAGATAAGGAGATATTTTTATTGTCTGAAAATCTTATAACTGCCAC
ACATTTAGTTAGATTTCCTCCTCCTTTCCCTCCTTTTTGATTGAAGGGGGTTGGGAGTGGGCTTGGGTTGGGTTTCATGGTATTTTTCCTATGTATTATTTGCTTGGGGTGAGTCATTGTGAAATAGTCTTTGGTGTTTGAACTTTTTGCTGAGTGATGTTTTGTTTCCTTTCCCCTTTAATTTCAATGGTTACCTCGTT
GTGACTTTAATCATTGCTTTGACCCATTTCTAATGCAAC
>TRINITY_DN104099_c0_g2_i4 from sample A3 / Example unspliced isoform:ACCGGAGAAGCATACAATTGTTGGTGCGTTGCTTTCGAAAGCAAGCCACATTGTCGAGCCAACGACAAAAAGATAGGCCTTAGCTACATGTGGCCCGTTTGTTTCGAAGGCTCCACGGGACTAGTCAACTTTTTCATCAATACAAAGTCAGGTGACCCAGGTTCCAAACCCCGCCAAGTACCTGTAAACAACCGCCTGCG
CGGGAACGGGGAAGCCTCGATTCGTCACCGAGTTTTTTACAGACGGTTTTGCTTAAATAGTTTTTGATCCGCTACCTGAGCATTGTCGACAGAAATTATTCCGAAAGAATTGGCGGCATTGAAGCTCGAGTGAGCGTGTTGGAATGGAGGCAGCGATGGATCTGATGCGAAGAATGCCGCCTTCTCTGTCGCAGAACGCT
TTGACGTCTTTGCTAGCACTGTTGCCTGAGCACTCGCCCGAGCTCCTGTCTCGCGTAGATCAACCTCTTCAGGTGGCAATTGATGAGGAGTCAGGGAAGGATTTTTTGCTGTGCGATTACAATCGAGATGGTGATTCATACAGGTAAGTTTCATGAAATGGTATGTCATTCTGGTTGCATTCCAGTTAATATTTTCATGC
ACGATGGCCTGTGGCCATATATAGGAGAAAGAGATACTCATGTTGAGAGTTGAATATTTAATGATTACCCAATATGGTAAAGACTTTGATCTGCAAAAGCAATGGATTTTTAGTTTAAGGATCAATGGCAACCAGTAGGATGAAGGAAGAATCGGAATTGGGACTTATGCAATAATCCATACCTTGTTGCTCCGCAATTT
ATAGAAAAAACTTGCTCAATGAAGTATTGAAATATGTTTATGATGATGACGCCACTGTGTTATAGGTCTCCATGGTCAAACAAGTACTATCCACCATTGGAAGATGGAGCGCAGCCATCAATTGATTTACGAAAGCTTGAAGTGGAAGCAAATGATATTTTTGCCATTTATCGTGACCAgtgaggtcctttacttacctt
gtctttggcaatgctttcttttgttgattacctaatccatctttggtctaaaggacctcccaatcaccacaggttcaagtataagtggttgctgatgaagtaatagcaatcgtttaatgtgctcatgttgatagGTATTATGAAGGTGGAATCTCTTCTGTATACATGTGGGAACCGGATGAAGGAGAAGGCTTCGCAGC
ATGTTTTTTGATAAAGAAGGATGGTTCGCAGACAGGGCAAGGGCGGAGGGGTAGCTTGCAGCAAGGTGTATGGGATGCTATCCATGTTGTTGAAGTAGGAGTTGAAGACGAGGGCACAGCTCATTACTGTTTGACCAGTACTGTCATGCTTTCCATGACTACAAGTGATAAACCATCAGGCACCTTCAAGTTGTCAGGAT
CAATCACTCGTCAGATGGCAGCTGATATGTCAGTTGCTGATGGTCATTTGAGCAACATGGGACGGATGATTGAAGAAATGGAGAGCAAGTTGAGAAATGCCCTGGACCAGGT
Intron 5 GTGGGTTGTT ... AAAAATGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.73 | 95 | 12.7 | 7.7 |
| A2 | 9.19 | 95 | 16.8 | 10.3 |
| A3 | 5.65 | 95 | 15.3 | 6 |
| A4 | 13.69 | 94 | 21.2 | 16 |
| A5 | 9.5 | 39 | 10.7 | 4.3 |
| A6 | 6.78 | 530 | 73.3 | 43.7 |
| A7 | 5.92 | 398 | 49.8 | 28.7 |
| A8 | 7.15 | 367.3 | 35.8 | 33 |
| A9 | 5.36 | 442 | 65 | 27.3 |
| A10 | 6.81 | 377 | 49.3 | 30 |
>TRINITY_DN98127_c0_g1_i5 from sample A4 / Example spliced isoformGGTGACCACTCTCCAATAAAAAGATTGTGTGGAAACCATGCCTTGTAAAGGGTGGACTCGCTTACCGGAGAAGCATACAATTGTTGGTGCGTTGCTTTCGAAAGCAAGCCACATTGTCGAGCCAACGACAAAAAGATAGGCCTTAGCTACATGTGGCCCGTTTGTTTCGAAGGCTCCACGGGACTAGTCAACTTTTTCAT
CAATACAAAGTCAGGTGACCCAGGTTCCAAACCCCGCCAAGTACCTGTAAACAACCGCCTGCGCGGGAACGGGGAAGCCTCGATTCGTCACCGAGTTTTTTACAGACGGTTTTGCTTAAATAGTTTTTGATCCGCTACCTGAGCATTGTCGACAGAAATTATTCCGAAAGAATTGGCGGCATTGAAGCTCGAGTGAGCGT
GTTGGAATGGAGGCAGCGATGGATCTGATGCGAAGAATGCCGCCTTCTCTGTCGCAGAACGCTTTGACGTCTTTGCTAGCACTGTTGCCTGAGCACTCGCCCGAGCTCCTGTCTCGCGTAGATCAACCTCTTCAGGTGGCAATTGATGAGGAGTCAGGGAAGGATTTTTTGCTGTGCGATTACAATCGAGATGGTGATTC
ATACAGGTCTCCATGGTCAAACAAGTACTATCCACCATTGGAAGATGGAGCGCAGCCATCAATTGATTTACGAAAGCTTGAAGTGGAAGCAAATGATATTTTTGCCATTTATCGTGACCAGTATTATGAAGGTGGAATCTCTTCTGTATACATGTGGGAACCGGATGAAGGAGAAGGCTTCGCAGCATGTTTTTTGATAA
AGAAGGATGGTTCGCAGACAGGGCAAGGGCGGAGGGGTAGCTTGCAGCAAGGTGTATGGGATGCTATCCATGTTGTTGAAGTAGGAGTTGAAGACGAGGGCACAGCTCATTACTGTTTGACCAGTACTGTCATGCTTTCCATGACTACAAGTGATAAACCATCAGGCACCTTCAAGTTGTCAGGATCAATCACTCGTCAG
ATGGCAGCTGATATGTCAGTTGCTGATGGTCATTTGAGCAACATGGGACGGATGATTGAAGAAATGGAGAGCAAGTTGAGAAATGCCCTGGACCAGGTATATTTTGGGAAAACAAGGGAGATGGTGTTTACATTGCGACAGCCAATTGGTGTACTGACCTCAACATCAGCGACAGGGCAGAGCTTGCAGAAAAGTATTGT
GGGTGACATGCATCGTTGATTATAGCAGGAGACACATTTGCATTGGTTCGAAAATATTCTTTTTGCTAATTAGCAGTTGTGAATATAATGGTGTTAATAGATTATGATTTAATTCACATGATATTTTATTACTGTAATGCATGTATTTGCATTAGATACAGTAAATTCAATTTTTTTGTTTGGAATTAGCAGTGTAGCAG
TTCACGTCGCTGAACACTAGATAAGGAGATATTTTTATTGTCTGAAAATCTTATAACTGCCACACATTTAGTTAGATTTCCTCCTCCTTTCCCTCCTTTTTGATTGAAGGGGGTTGGGAGTGGGCTTGGGTTGGGTTTCATGGTATTTTTCCTATGTATTATTTGCTTGGGGTGAGTCATTGTGAAATAGTCTTTGGTGT
TTGAACTTTTTGCTGAGTGATGTTTTGTTTCCTTTCCCCTTTAATTTCAATGGTTACCTCGTTGTGACTTTAATCATTGCTTTGACCCATTTCTAATGCAACAGAACTTGTGTCTCTAAGTATACTACTAATTGC
>TRINITY_DN98127_c0_g1_i2 from sample A4 / Example unspliced isoform:GGAGGTGGTGGGGAATACGAAAGTCTTCGAAATTGATTTTAATTTTTAGAATGTTTGGATTCTTCTGATGCATTGGCTGCACTGTACATTGTTTACATGTAAATAGTTGTAGGAAAATAAATAACCTGGATAACTCACTCCACTCATAATCCGGGAAATGAGCAGGTGGCAATTGATGAGGAGTCAGGGAAGGATTTTTT
GCTGTGCGATTACAATCGAGATGGTGATTCATACAGGTAAGTTTCATGAAATGGTATGTCATTCTGGTTGCATTCCAGTTAATATTTTCATGCACGATGGCCTGTGGCCATATATAGGAGAAAGAGATACTCATGTTGAGAGTTGAATATTTAATGATTACCCAATATGGTAAAGACTTTGATCTGCAAAAGCAATGGAT
TTTTAGTTTAAGGATCAATGGCAACCAGTAGGATGAAGGAAGAATCGGAATTGGGACTTATGCAATAATCCATACCTTGTTGCTCCGCAATTTATAGAAAAAACTTGCTCAATGAAGTATTGAAATATGTTTATGATGATGACGCCACTGTGTTATAGGTCTCCATGGTCAAACAAGTACTATCCACCATTGGAAGATGG
AGCGCAGCCATCAATTGATTTACGAAAGCTTGAAGTGGAAGCAAATGATATTTTTGCCATTTATCGTGACCAGTGAGGTATTATGAAGGTGGAATCTCTTCTGTATACATGTGGGAACCGGATGAAGGAGAAGGCTTCGCAGCATGTTTTTTGATAAAGAAGGgtgggttgtttcttagatatttcctgggaaagactac
atagtttccatcagaatatattctctttattttccttgtcactttttttcaactctggactaaaagttgatttgggggatgaaaaatgaagATGGTTCGCAGACAGGGCAAGGGCGGAGGGGTAGCTTGCAGCAAGGTGTATGGGATGCTATCCATGTTGTTGAAGTGAGTGTTTTATATATTGTTTTTAAAGTTTAATA
TTTGCAATAGAGCTCAAGTAGAACAGCAATTTTCCTTCTCTTGCAGAATGACTGTTTCTGCAGAAATACTATATAGTATAGAGACTTTGTGAGGAGGCATTATATTGTGTCCCTTTTCAGGTAGGAGTTGAAGACGAGGGCACAGCTCATTACTGTTTGACCAGTACTGTCATGCTTTCCATGACTACAAGTGATAAACC
ATCAGGCACCTTCAAGTTGTCAGGATCAATCACTCGTCAGGTATTTTGATTCTTTGATATATTTAGAAAGGGCTGCTGCTTCAATTTGTAGAAAAAATGTAGAACACAGATGATATCTGAAACGAAGCAAACTAACTGTGATTTCAAAGTACCTTATTATCAACCTTAAGAACTTCCTCAGAAAAAGAGATTGCCTATAT
GTGTACTGCTTGCATAAGGGCACTTTCTGGCAAAAAATATAATAAAGTTCAGAGTACATTACAACTTGTATGTGCTTGTTCCCATGGTAGAAGAATGACTTCACAACATAGAAATGTTCAACCTCTGGACAATGACAGACTACTCTACTAAAAAGAATGGTAGATGCTTCATCTTAAAATTAACAACCCCAATGAAAAAA
ATACCAATCCAAGTGTGTATATAACCACCTTGAAACTTTACTATGCTTTTCTGAACAGCATAGTAATACCCTTTCTAGTCGTTGGTTGGTCGCCTTGACCTCCTCTAGCACTGCTTTATCTAACCTTCTTTTGATGGGTGCAACTTGTCTCTCCTAACTTGATTAAAGAGGCTTTACGAGCACTAACAACATTCCACAAA
ACAGTGCAATCTATTCCTTCTTGGTTTGACAATAAAATTCCAAATTCTCATAATGCTTTTCAGATAGTCTAGACTCTAGAGACTTCAAATGGGAAGCACTGGCATTATACATTGTTTTTTTGGGGAATGGCATGTTAGATCCCCAAACATTTTTTCAAAGTTATCAGATAGTGCTTCAAAAATGATGCTGCTCTCAACAT
GTTCATTGGCCTAGATCCAAAGTAAATGCGTTCCAAAAAAAGATCATGTCTCGGATTGATATGGTCTTATAAATATTTGGTTATCCTTTTGGTAAAAATTGGACTAGGTAAACCATTGTTCATGTGATTGGTGACATTGGTCCCTTCTATGGAGGTTGGGATTATATAGATCCAAATTCTCACATGATACTAGGCTTCCT
ATATCATAAGAAACCCTTCCTTATCCTTGGGATTTTCTATAAATGATAGTTCCTTGCCACGAGGAGGTGCGAATGGCTCCTAGCCCTTTACTGTTTCCCTTAGGCTTTCTGGCGTACCCTCTTCCCCAATAAATCTGCCCCACCACTCTTGGTTCTCCCATTCTAG
Intron 6 GTTTTTATTG ... TCATGTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.63 | 153 | 13.8 | 50 |
| A2 | 21 | 158 | 8 | 42 |
| A3 | 19.74 | 122 | 20.6 | 30 |
| A4 | 16.82 | 89 | 8.6 | 18 |
| A5 | 18.82 | 69 | 5 | 16 |
| A6 | 21.01 | 1199.1 | 86.2 | 319 |
| A7 | 20.52 | 891.2 | 70 | 230 |
| A8 | 21.91 | 841 | 70.2 | 236 |
| A9 | 20.86 | 812.1 | 62.2 | 214 |
| A10 | 21.06 | 761 | 43.4 | 203 |
>TRINITY_DN111818_c0_g2_i4 from sample A1 / Example spliced isoformTGCGTTGCTTTCGAAAGCAAGCCACATTGTCGAGCCAACGACAAAAAGATAGGCCTTAGCTACATGTGGCCCGTTTGTTTCGAAGGCTCCACGGGACTAGTCAACTTTTTCATCAATACAAAGTCAGGTGACCCAGGTTCCAAACCCCGCCAAGTACCTGTAAACAACCGCCTGCGCGGGAACGGGGAAGCCTCGATTCG
TCACCGAGTTTTTTACAGACGGTTTTGCTTAAATAGTTTTTGATCCGCTACCTGAGCATTGTCGACAGAAATTATTCCGAAAGAATTGGCGGCATTGAAGCTCGAGTGAGCGTGTTGGAATGGAGGCAGCGATGGATCTGATGCGAAGAATGCCGCCTTCTCTGTCGCAGAACGCTTTGACGTCTTTGCTAGCACTGTTG
CCTGAGCACTCGCCCGAGCTCCTGTCTCGCGTAGATCAACCTCTTCAGGTGGCAATTGATGAGGAGTCAGGGAAGGATTTTTTGCTGTGCGATTACAATCGAGATGGTGATTCATACAGGTCTCCATGGTCAAACAAGTACTATCCACCATTGGAAGATGGAGCGCAGCCATCAATTGATTTACGAAAGCTTGAAGTGGA
AGCAAATGATATTTTTGCCATTTATCGTGACCAGTATTATGAAGGTGGAATCTCTTCTGTATACATGTGGGAACCGGATGAAGGAGAAGGCTTCGCAGCATGTTTTTTGATAAAGAAGGATGGTTCGCAGACAGGGCAAGGGCGGAGGGGTAGCTTGCAGCAAGGTGTATGGGATGCTATCCATGTTGTTGAAGTAGGAG
TTGAAGACGAGGGCACAGCTCATTACTGTTTGACCAGTACTGTCATGCTTTCCATGACTACAAGTGATAAACCATCAGGCACCTTCAAGTTGTCAGGATCAATCACTCGTCAGATGGCAGCTGATATGTCAGTTGCTGATGGTCATTTGAGCAACATGGGACGGATGATTGAAGAAATGGAGAGCAAGTTGAGAAATGCC
CTGGACCAGGTATATTTTGGGAAAACAAGGGAGATGGTGTTTACATTGCGACAGCCAATTGGTGTACTGACCTCAACATCAGCGACAGGGCAGAGCTTGCAGAAAAGTATTGTGGGTGACATGCATCGTTGATTATAGCAGGAGACACATTTGCATTGGTTCGAAAATATTCTTTTTGCTAATTAGCAGTTGTGAATATA
ATGGTGTTAATAGATTATGATTTAATTCACATGATATTTTATTACTGTAATGCATGTATTTGCATTAGATACAGTAAATTCAATTTTTTTGTTTGGAATTAGCAGTGTAGCAGTTCACGTCGCTGAACACTAGATAAGGAGATATTTTTATTGTCTGAAAATCTTATAACTGCCACACATTTAGTTAGATTTCCTCCTCC
TTTCCCTCCTTTTTGATTGAAGGGGGTTGGGAGTGGGCTTGGGTTGGGTTTCATGGTATTTTTCCTATGTATTATTTGCTTGGGGTGAGTCATTGTGAAATAGTCTTTGGTGTTTGAACTTTTTGCTGAGTGATGTTTTGTTTCCTTTCCCC
>TRINITY_DN111818_c0_g2_i6 from sample A1 / Example unspliced isoform:AAAAGTAGGTCCAATGGATTTTTTATGATGTTCCAAATATTAGTGTTAAGGTTTGTAAGATGTTACATTTGGTGATTGTTGCAAGGTATCAATTTTTTTCAATAATGATTAAATTCTTCATCATTCAGATGGCAGCTGATATGTCAGTTGCTGATGGTCATTTGAGCAACATGGGACGGATGATTGAAGAAATGGAGAGC
AAGTTGAGAAATGCCCTGGACCAGgtttttattgcagtcggaatttgctattttttatctagctagcaaacaatagattactgtgacaatgacatttatttgtgtggatcatgttaagGTATATTTTGGGAAAACAAGGGAGATGGTGTTTACATTGCGACAGCCAATTGGTGTACTGACCTCAACATCAGCGACAGGGC
AGAGCTTGCAGAAAAGTATTGTGGGTGACATGCATCGTTGATTATAGCAGGAGACACATTTGCATTGGTTCGAAAATATTCTTTTTGCTAATTAGCAGTTGTGAATATAATGGTGTTAATAGATTATGATTTAATTCACATGATATTTTATTACTGTAATGCATGTATTTGCATTAGATACAGTAAATTCAATTTTTTTG
TTTGGAATTAGCAGTGTAGCAGTTCACGTCGCTGAACACTAGATAAGGAGATATTTTTATTGTCTGAAAATCTTATAACTGCCACACATTTAGTTAGATTTCCTCCTCCTTTCCCTCCTTTTTGATTGAAGGGGGTTGGGAGTGGGCTTGGGTTGGGTTTCATGGTATTTTTCCTATGTATTATTTGCTTGGGGTGAGTC
ATTGTGAAATAGTCTTTGGTGTTTGAACTTTTTGCTGAGTGATGTTTTGTTTCCTTTCCCC