sp|Q945P0|FHA1_TOBAC ----> Transcriptional activator FHA1

Intron 1 GTATTGTGCG ... GATATTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	77.64	37	131	126
A2	80.32	37	166	136
A3	82.59	47	247	199
A4	74.06	45	144	113
A5	80.57	24	113	86
A6	78.23	154	563	544
A7	79.64	170	681	649
A8	79.67	98	409	359
A9	76.98	186	640	604
A10	73.44	208	591	559

>TRINITY_DN106265_c0_g1_i2 from sample A3 / Example spliced isoform

TTCTGCGTTACCGCTTACGCTAGAATTGCTGCTATCTCCTGACGGTCACATGGGATGACGCCCGGGCTCATGGAGGCCGTCGAATCAACCAATCCATCCGTCTCCCGATGACTTGGGAGACTGGGGTTTCGGGCTAGGCAGTACAAGATCCTGTGTTCGAATCCGTGCATGATCTACTCTGTAGGTGTTTCGAACCATTA
AAGCCATGGGAGACGTGGAAGCGGGGTTCGCCAAGCTGCAGGGGGAGGACTTCGAGTACTACATGCAGACATATTCCATTGTCCTGGGCAGGAACAGCAAGAAATCGTCTGTTGACATCGATCTATCCTACCTGGGAGGCGGCATGAACATTTCCCGTCAACACGCCAGAATTTACTACGACTTCGACAGGAAGAGATTT
GCCCTGGAAGTCATTGGGAAGAATGGCTGCCTGGTGGAAGGGGTGCTCTACCTCCCAGGGAACCCTCCTATCAAATTGGATTCCCAGGATTTGCTTCAGATTGGGGACAAGAAATTCTATTTTCTGTTACCTGTCAGAAAAATCGTTAAACCCCAACATCAGCACCTAAATCTCAATGCCAATGCCAATGCCCCTCTTGC
TCTGCCGTCGTCAGCAGTTTCCGTGCCAGGTGGTGCATCAGGGACCTTGAAGAAGAGGGGTGGGAGAAAAGAAGACGATCACTATCAACAGCAGGAGCAGCAACATCCACCCACGAAAAAATGGAGGTCCCAGACCAAGCAGGATGGAGGGTTGGATAATGCTCCACGAGACCGGAAACAGTCAGCATCCTCATGGTCTC
CCCATGAAATGCATAATCCTTATATCATGCCTAAGCAGGGCTTCCCTTATCATTCAGATCAAAAAGGAGATTTGAGGAGAAGAGCAGACCATGAAGCAGAGATGTTTCAGCAAATGCAAGAAGAAAAAGATGTAGTTTCAGCTGTTGCAACTGTACTTTCAGACCTTTGTGGTCCAGGGGAATGGATGGCAATGGCAAAA
CTTCATTCTGAGCTTCTTGAACACTACAGCGGGATTTGGCATCAGAGTAGGATAAGGAAATTTTTGACATCAGATGATTGGGCAGATGCTGAGAGTAAGGGGAGACCGTGGATTGGACTTCTTTCACTACTTAGAAAATATCCAGAGCACTTTGTTATCAATACAAGGTCTAAAGGAAGAGTGACTCAAGAGTTTGTATC
ATTGGTTTCTCTCCTTTCATAGTTGGGAAACTTCTACATCATGACAATCCGGGAGCATCACTTGTAGTTTATATGCTTTTTTGTTCATGACAAGTGACGAGTTACAAAAAAACTATGTATAGTCTTTATTAACCTTTTATTTTGAGTTTACATGCTAATCATATGTCGTTTATTTTTAACATTGAAAAAGGAGATTATAT
TATGTTTACACAATATTTACAATACAAACTTGATAAGCCTGAGAATCAGAGTTGGTTTCTCTCCTTTCATAATTGGGAAACTTCTACAATACAAACTTGATAAGCTTGAGAACCAGAGTTGGTTTCTCTCCTTTCATAATTGGGAAACTTCTACATCATGGCAAGCCGGGAGCACCAGTTGTAGTTTATATGCTTTTTTG
T

>TRINITY_DN106265_c0_g1_i3 from sample A3 / Example unspliced isoform:

TTCTGCGTTACCGCTTACGCTAGAATTGCTGCTATCTCCTGACGGTCACATGGGATGACGCCCGGGCTCATGGAGGCCGTCGAATCAACCAATCCATCCGTCTCCCGATGACTTGGGAGACTGGGGTTTCGGGCTAGGCAGTACAAGATCCTGTGTTCGAATCCGTGCATGATCTACTCTGTAGGTGTTTCGAACCATTA
AAGgtattgtgcgatttctgtaggtaggctttccaaaaccaaaacagcaaagttttcatccgtccgtccctccttcgatatttcagCCATGGGAGACGTGGAAGCGGGGTTCGCCAAGCTGCAGGGGGAGGACTTCGAGTACTACATGCAGACATATTCCATTGTCCTGGGCAGGAACAGCAAGAAATCGTCTGTTGACA
TCGATCTATCCTACCTGGGAGGCGGCATGAACATTTCCCGTCAACACGCCAGAATTTACTACGACTTCGACAGGAAGAGATTTGCCCTGGAAGTCATTGGGAAGAATGGCTGCCTGGTGGAAGGGGTGCTCTACCTCCCAGGGAACCCTCCTATCAAATTGGATTCCCAGGATTTGCTTCAGATTGGGGACAAGAAATTC
TATTTTCTGTTACCTGTCAGAAAAATCGTTAAACCCCAACATCAGCACCTAAATCTCAATGCCAATGCCAATGCCCCTCTTGCTCTGCCGTCGTCAGCAGTTTCCGTGCCAGGTGGTGCATCAGGGACCTTGAAGAAGAGGGGTGGGAGAAAAGAAGACGATCACTATCAACAGCAGGAGCAGCAACATCCACCCACGAA
AAAATGGAGGTCCCAGACCAAGCAGGATGGAGGGTTGGATAATGCTCCACGAGACCGGAAACAGTCAGCATCCTCATGGTCTCCCCATGAAATGCATAATCCTTATATCATGCCTAAGCAGGGCTTCCCTTATCATTCAGATCAAAAAGGAGATTTGAGGAGAAGAGCAGACCATGAAGCAGAGATGTTTCAGCAAATGC
AAGAAGAAAAAGATGTAGTTTCAGCTGTTGCAACTGTACTTTCAGACCTTTGTGGTCCAGGGGAATGGATGGCAATGGCAAAACTTCATTCTGAGCTTCTTGAACACTACAGCGGGATTTGGCATCAGAGTAGGATAAGGAAATTTTTGACATCAGATGATTGGGCAGATGCTGAGAGTAAGGGGAGACCGTGGATTGGA
CTTCTTTCACTACTTAGAAAATATCCAGAGCACTTTGTTATCAATACAAGGTCTAAAGGAAGAGTGACTCAAGAGTTTGTATCATTGGTTTCTCTCCTTTCATAGTTGGGAAACTTCTACATCATGACAATCCGGGAGCATCACTTGTAGTTTATATGCTTTTTTGTTCATGACAAGTGACGAGTTACAAAAAAACTATG
TATAGTCTTTATTAACCTTTTATTTTGAGTTTACATGCTAATCATATGTCGTTTATTTTTAACATTGAAAAAGGAGATTATATTATGTTTACACAATATTTACAATACAAACTTGATAAGCCTGAGAATCAGAGTTGGTTTCTCTCCTTTCATAATTGGGAAACTTCTACAATACAAACTTGATAAGCTTGAGAACCAGA
GTTGGTTTCTCTCCTTTCATAATTGGGAAACTTCTACATCATGGCAAGCCGGGAGCACCAGTTGTAGTTTATATGCTTTTTTGT

Intron 2 GTCAGCAATT ... CCTGCAATAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	53.23	58	66	22
A2	50.67	37	38	7
A3	53.92	47	55	14
A4	55.56	44	55	9
A5	58.82	21	30	2
A6	50.97	279	290	40
A7	51.99	313	339	56
A8	52.58	349	387	53
A9	51.32	294	310	59
A10	52.94	240	270	29

>TRINITY_DN44244_c0_g2_i1 from sample A7 / Example spliced isoform

CAAAATTCCACACAAATACCATCGGCACGTCAAAGTTACATGGAAAGCCTTCTGCGTTACCGCTTACGCTAGAATTGCTGCTATCTCCTGACGGTCACATGGGATGACGCCCGGGCTCATGGAGGCCGTCGAATCAACCAATCCATCCGTCTCCCGATGACTTGGGAGACTGGGGTTTCGGGCTAGGCAGTACAAGATCC
TGTGTTCGAATCCGTGCATGATCTACTCTGTAGGTGTTTCGAACCATTAAAGGTATTGTGCGATTTCTGTAGGTAGGCTTTCCAAAACCAAAACAGCAAAGTTTTCATCCGTCCGTCCCTCCTTCGATATTTCAGCCATGGGAGACGTGGAAGCGGGGTTCGCCAAGCTGCAGGGGGAGGACTTCGAGTACTACATGCAG
ACATATTCCATTGTCCTGGGCAGGAACAGCAAGAAATCGTCTGTTGACATCGATCTATCCTACCTGGGAGGCGGCATGAACATTTCCCGTCAACACGCCAGAATTTACTACGACTTCGACAGGAAGAGATTTGCCCTGGAAGTCATTGGGAAGAATGGCTGCCTGGTGGAAGGGGTGCTCTACCTCCCAGGGAACCCTCC
TATCAAATTGGATTCCCAGGATTTGCTTCAGATCGGGGACAAGAAATTCTATTTTCTGTTACCTGTCAGAAAAATCGTTAAACCCCAACATCAGCACCTAAATCTCAATGCCAATGCCAATGCCCCTCTTGCTCTGCCGTCGTCAGCAGTTTCCGTGCCAGGTGGTGCATCAGGGACCTTGAAGAAGAGGGGTGGGAGAA
AAGAAGACGATCACTATCAACAGCAGGAGCAGCAACATCCACCCACAAAAAAATGGAGGTCCCAGACTAAGCAGGATGGAGGGTTGGATAATGCTCCACGAGACCGGAAACAGTCAGCATCCTCATGGTCTCCCCATGAAATGCATAATCCTTATATCATGCCTAAGCAGGGCTTCCCTTATCATTCAGATCAAAAAGGA
GATTTGAGGAGAAGAGCAGACCATGAAGCAGAGATGTTTCAGCAAATGCAAGAAGAAAAAGATGTAGTTTCAGCTGTTGCAACTGTACTTTCAGACCTTTGTGGTCCAGGGGAATGGATGGCAATGGCAAAACTTCATTCTGAGGTGGTCTTGGCACCGAGATAAATCTCTAGAATTGGATTGAATTTTTGAACATGAAG
ACCTTTTCAAGTAAACCAATTTAATATGGCTTCAAGATTCCACTATGGCACTTGTAGACTCCAGAATATGATGTGAAAGTTAGAAACATGGTACCATCAATAGTTTGACTCTATACATAGCTGGTAGTGAGTGCATGTCTTATGTGTTGAAGGAAGGAGATGTTGCATGCTAAGTATGCTTGACTTCCACTGTAAGGAAG
AAGGATGAATCTATAACACCTTCCTTTTTGCACAGGCAATAGTCTAAAAGGCTCAAGGAGAAAATGGGAAGACAGCTTTTTGGCAGATGAACCTGTCTTGCCCATAAAAAAATCCTTTTGATAATATTCATACAAAAGAAATATTTGACGACGTAAATATCCATGGTAGCTATATATTGAAGATTTGGGCTCTGATATAT
TACGAACAAAGTCAAAATTTATATCAGTTCTTGTTATATATATTTTCAATTGGAGCAACCAATTAGATTCTCAATAAGTTATACTTCAATCAAAGTATCACTTAATACTGGCTGCAATGAATATATTTATGTTTTACC

>TRINITY_DN44244_c0_g2_i3 from sample A7 / Example unspliced isoform:

CAAAATTCCACACAAATACCATCGGCACGTCAAAGTTACATGGAAAGCCTTCTGCGTTACCGCTTACGCTAGAATTGCTGCTATCTCCTGACGGTCACATGGGATGACGCCCGGGCTCATGGAGGCCGTCGAATCAACCAATCCATCCGTCTCCCGATGACTTGGGAGACTGGGGTTTCGGGCTAGGCAGTACAAGATCC
TGTGTTCGAATCCGTGCATGATCTACTCTGTAGGTGTTTCGAACCATTAAAGGTATTGTGCGATTTCTGTAGGTAGGCTTTCCAAAACCAAAACAGCAAAGTTTTCATCCGTCCGTCCCTCCTTCGATATTTCAGCCATGGGAGACGTGGAAGCGGGGTTCGCCAAGCTGCAGGGGGAGGACTTCGAGTACTACATGCAG
ACATATTCCATTGTCCTGGGCAGGAACAGCAAGAAATCGTCTGTTGACATCGATCTATCCTACCTGGGAGGCGGCATGAACATTTCCCGTCAACACGCCAGAATTTACTACGACTTCGACAGGAAGAGATTTGCCCTGGAAGTCATTGGGAAGAATGGCTGCCTGGTGGAAGGGGTGCTCTACCTCCCAGGGAACCCTCC
TATCAAATTGGATTCCCAGGATTTGCTTCAGATCGGGGACAAGAAATTCTATTTTCTGTTACCTGTCAGAAAAATCGTTAAACCCCAACATCAGCACCTAAATCTCAATGCCAATGCCAATGCCCCTCTTGCTCTGCCGTCGTCAGCAGTTTCCGTGCCAGGTGGTGCATCAGGGACCTTGAAGAAGAGGGGTGGGAGAA
AAGAAGACGATCACTATCAACAGCAGGAGCAGCAACATCCACCCACAAAAAAATGGAGGTCCCAGACTAAGCAGGATGGAGGGTTGGATAATGCTCCACGAGACCGGAAACAGTCAGCATCCTCATGGTCTCCCCATGAAATGCATAATCCTTATATCATGCCTAAGCAGGGCTTCCCTTATCATTCAGATCAAAAAGGA
GATTTGAGGAGAAGAGCAGACCATGAAGCAGAGATGTTTCAGCAAATGCAAGAAGAAAAAGATGTAGTTTCAGCTGTTGCAACTGTACTTTCAGACCTTTGTGGTCCAGGGGAATGGATGGCAATGGCAAAACTTCATTCTGAGgtcagcaattttttctcagatgtcagcatgaagtgaaaacttataattctttataa
tgattttatgagtgggacttgtaatactagccatataagaaaacagactgaatctgcttatctttcatcaggatttgacaagtttaggcaaacaccatagcttgtcaagtataactaaaattggataattttagatataattgttcgagtgtgttatgatttatgatcccatttcctgcaatagGTGGTCTTGGCACCGA
GATAAATCTCTAGAATTGGATTGAATTTTTGAACATGAAGACCTTTTCAAGTAAACCAATTTAATATGGCTTCAAGATTCCACTATGGCACTTGTAGACTCCAGAATATGATGTGAAAGTTAGAAACATGGTACCATCAATAGTTTGACTCTATACATAGCTGGTAGTGAGTGCATGTCTTATGTGTTGAAGGAAGGAGA
TGTTGCATGCTAAGTATGCTTGACTTCCACTGTAAGGAAGAAGGATGAATCTATAACACCTTCCTTTTTGCACAGGCAATAGTCTAAAAGGCTCAAGGAGAAAATGGGAAGACAGCTTTTTGGCAGATGAACCTGTCTTGCCCATAAAAAAATCCTTTTGATAATATTCATACAAAAGAAATATTTGACGACGTAAATAT
CCATGGTAGCTATATATTGAAGATTTGGGCTCTGATATATTACGAACAAAGTCAAAATTTATATCAGTTCTTGTTATATATATTTTCAATTGGAGCAACCAATTAGATTCTCAATAAGTTATACTTCAATCAAAGTATCACTTAATACTGGCTGCAATGAATATATTTATGTTTTACC

Intron 3 GTAGGTGTTT ... GATATTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	79.67	31	117	126
A2	76.59	46	165	136
A3	86.78	32	221	199
A4	79.87	31	133	113
A5	80.91	23	109	86
A6	80.37	126	488	544
A7	82.14	137	611	649
A8	83.47	71	358	359
A9	78.69	159	570	604
A10	78.24	156	563	559

>TRINITY_DN104571_c1_g1_i2 from sample A4 / Example spliced isoform

CTTTACAAAATTCCACACAAATACCATCGGCACGTCAAAGTTACATGGAAAGCCTTCTGCGTTACCGCTTACGCTAGAATTGCTGCTATCTCCTGACGGTCACATGGGATGACGCCCGGGCTCATGGAGGCCGTCGAATCAACCAATCCATCCGTCTCCCGATGACTTGGGAGACTGGGGTTTCGGGCTAGGCAGTACAA
GATCCTGTGTTCGAATCCGTGCATGATCTACTCTCCATGGGAGACGTGGAAGCGGGGTTCGCCAAGCTGCAGGGGGAGGACTTCGAGTACTACATGCAGACATATTCCATTGTCCTGGGCAGGAACAGCAAGAAATCGTCTGTTGACATCGATCTATCCTACCTGGGAGGCGGCATGAACATTTCCCGTCAACACGCCAG
AATTTACTACGACTTCGACAGGAAGAGATTTGCCCTGGAAGTCATTGGGAAGAATGGCTGCCTGGTGGAAGGGGTGCTCTACCTCCCAGGGAACCCTCCTATCAAATTGGATTCCCAGGATTTGCTTCAGATCGGGGACAAGAAATTCTATTTTCTGTTACCTGTCAGAAAAATCGTTAAACCCCAACATCAGCACCTAA
ATCTCAATGCCAATGCCAATGCCCCTCTTGCTCTGCCGTCGTCAGCAGTTTCCGTGCCAGGTGGTGCATCAGGGACCTTGAAGAAGAGGGGTGGGAGAAAAGAAGACGATCACTATCAACAGCAGGAGCAGCAACATCCACCCACGAAAAAATGGAGGTCCCAGACCAAGCAGGATGGAGGGTTGGATAATGCTCCACGA
GACCGGAAACAGTCAGCATCCTCATGGTCTCCCCATGAAATGCATAATCCTTATATCATGCCTAAGCAGGGCTTCCCTTATCATTCAGATCAAAAAGGAGATTTGAGGAGAAGAGCAGACCATGAAGCAGAGATGTTTCAGCAAATGCAAGAAGAAAAAGATGTAGTTTCAGCTGTTGCAACTGTACTTTCAGACCTTTG
TGGTCCAGGGGAATGGATGGCAATGGCAAAACTTCATTCTGAGCTTCTTGAACACTACAGCGGGATTTGGCATCAGAGTAGGATAAGGAAATTTTTGACATCAGATGATTGGGCAGATGCTGAGAGTAAGGGGAGACCGTGGATTGGACTTCTTTCACTACTTAGAAAATATCCAGAGCACTTTGTTATCAATACAAGGT
CTAAAGGAAGAGTGACTCAAGAGTTTGTATCATTGGTTTCTCTCCTTTCATAGTTGGGAAACTTCCACATCATGACAATCCGGGAGCATCACTTGTAGTTTATATGCTTTTTTGTTCATGACAAGTGACGAGTTACAAAAAAACTATGTATAGTCTTTATTAACCTTTTATTTGGAGTTTACATGCTAATCATATGTCGT
TTATTTTTAACATTGAAAAAGGAGATTATATTATGTTTACACAATATTTACAATACAAACTTGATAAGCCTGAGAATCAGAGTTGGTTTCTCTCCTTTCATAATTGGGAAACTTCTACAATACAAACTTGATAAGCCTGAGAATCAGAGTTGGTTTCTCTCCTTTCATAATTGGGAAACTTCTACATCATGGCAAGCCGG
GAGCACCAGTTGTAGTTTATATGCTTTTTTGTTCATGACAAGTGACGAGTTACAAAAAAACTATGTATAGTCTTTATTAACCTTTTATTT

>TRINITY_DN104571_c1_g1_i1 from sample A4 / Example unspliced isoform:

CTTTACAAAATTCCACACAAATACCATCGGCACGTCAAAGTTACATGGAAAGCCTTCTGCGTTACCGCTTACGCTAGAATTGCTGCTATCTCCTGACGGTCACATGGGATGACGCCCGGGCTCATGGAGGCCGTCGAATCAACCAATCCATCCGTCTCCCGATGACTTGGGAGACTGGGGTTTCGGGCTAGGCAGTACAA
GATCCTGTGTTCGAATCCGTGCATGATCTACTCTgtaggtgtttcgaaccattaaaggtattgtgcgatttctgtaggtaggctttccaaaaccaaaacagcaaagttttcatccgtccgtccctccttcgatatttcagCCATGGGAGACGTGGAAGCGGGGTTCGCCAAGCTGCAGGGGGAGGACTTCGAGTACTACA
TGCAGACATATTCCATTGTCCTGGGCAGGAACAGCAAGAAATCGTCTGTTGACATCGATCTATCCTACCTGGGAGGCGGCATGAACATTTCCCGTCAACACGCCAGAATTTACTACGACTTCGACAGGAAGAGATTTGCCCTGGAAGTCATTGGGAAGAATGGCTGCCTGGTGGAAGGGGTGCTCTACCTCCCAGGGAAC
CCTCCTATCAAATTGGATTCCCAGGATTTGCTTCAGATCGGGGACAAGAAATTCTATTTTCTGTTACCTGTCAGAAAAATCGTTAAACCCCAACATCAGCACCTAAATCTCAATGCCAATGCCAATGCCCCTCTTGCTCTGCCGTCGTCAGCAGTTTCCGTGCCAGGTGGTGCATCAGGGACCTTGAAGAAGAGGGGTGG
GAGAAAAGAAGACGATCACTATCAACAGCAGGAGCAGCAACATCCACCCACGAAAAAATGGAGGTCCCAGACCAAGCAGGATGGAGGGTTGGATAATGCTCCACGAGACCGGAAACAGTCAGCATCCTCATGGTCTCCCCATGAAATGCATAATCCTTATATCATGCCTAAGCAGGGCTTCCCTTATCATTCAGATCAAA
AAGGAGATTTGAGGAGAAGAGCAGACCATGAAGCAGAGATGTTTCAGCAAATGCAAGAAGAAAAAGATGTAGTTTCAGCTGTTGCAACTGTACTTTCAGACCTTTGTGGTCCAGGGGAATGGATGGCAATGGCAAAACTTCATTCTGAGCTTCTTGAACACTACAGCGGGATTTGGCATCAGAGTAGGATAAGGAAATTT
TTGACATCAGATGATTGGGCAGATGCTGAGAGTAAGGGGAGACCGTGGATTGGACTTCTTTCACTACTTAGAAAATATCCAGAGCACTTTGTTATCAATACAAGGTCTAAAGGAAGAGTGACTCAAGAGTTTGTATCATTGGTTTCTCTCCTTTCATAGTTGGGAAACTTCCACATCATGACAATCCGGGAGCATCACTT
GTAGTTTATATGCTTTTTTGTTCATGACAAGTGACGAGTTACAAAAAAACTATGTATAGTCTTTATTAACCTTTTATTTGGAGTTTACATGCTAATCATATGTCGTTTATTTTTAACATTGAAAAAGGAGATTATATTATGTTTACACAATATTTACAATACAAACTTGATAAGCCTGAGAATCAGAGTTGGTTTCTCTC
CTTTCATAATTGGGAAACTTCTACAATACAAACTTGATAAGCCTGAGAATCAGAGTTGGTTTCTCTCCTTTCATAATTGGGAAACTTCTACATCATGGCAAGCCGGGAGCACCAGTTGTAGTTTATATGCTTTTTTGTTCATGACAAGTGACGAGTTACAAAAAAACTATGTATAGTCTTTATTAACCTTTTATTT

Intron 4 GTCAGCAATT ... CTTTCATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	57.89	48	66	9
A2	53.1	34	38.5	4
A3	53.4	48	55	19
A4	55.56	44	55	7
A5	57.69	22	30	4
A6	51.46	274	290.5	25
A7	54.1	288.5	340	55
A8	54.28	326	387	41
A9	52.65	281	312.5	44
A10	53.57	234	270	34

>TRINITY_DN104571_c1_g1_i5 from sample A4 / Example spliced isoform

CTTTACAAAATTCCACACAAATACCATCGGCACGTCAAAGTTACATGGAAAGCCTTCTGCGTTACCGCTTACGCTAGAATTGCTGCTATCTCCTGACGGTCACATGGGATGACGCCCGGGCTCATGGAGGCCGTCGAATCAACCAATCCATCCGTCTCCCGATGACTTGGGAGACTGGGGTTTCGGGCTAGGCAGTACAA
GATCCTGTGTTCGAATCCGTGCATGATCTACTCTGTAGGTGTTTCGAACCATTAAAGGTATTGTGCGATTTCTGTAGGTAGGCTTTCCAAAACCAAAACAGCAAAGTTTTCATCCGTCCGTCCCTCCTTCGATATTTCAGCCATGGGAGACGTGGAAGCGGGGTTCGCCAAGCTGCAGGGGGAGGACTTCGAGTACTACA
TGCAGACATATTCCATTGTCCTGGGCAGGAACAGCAAGAAATCGTCTGTTGACATCGATCTATCCTACCTGGGAGGCGGCATGAACATTTCCCGTCAACACGCCAGAATTTACTACGACTTCGACAGGAAGAGATTTGCCCTGGAAGTCATTGGGAAGAATGGCTGCCTGGTGGAAGGGGTGCTCTACCTCCCAGGGAAC
CCTCCTATCAAATTGGATTCCCAGGATTTGCTTCAGATCGGGGACAAGAAATTCTATTTTCTGTTACCTGTCAGAAAAATCGTTAAACCCCAACATCAGCACCTAAATCTCAATGCCAATGCCAATGCCCCTCTTGCTCTGCCGTCGTCAGCAGTTTCCGTGCCAGGTGGTGCATCAGGGACCTTGAAGAAGAGGGGTGG
GAGAAAAGAAGACGATCACTATCAACAGCAGGAGCAGCAACATCCACCCACGAAAAAATGGAGGTCCCAGACCAAGCAGGATGGAGGGTTGGATAATGCTCCACGAGACCGGAAACAGTCAGCATCCTCATGGTCTCCCCATGAAATGCATAATCCTTATATCATGCCTAAGCAGGGCTTCCCTTATCATTCAGATCAAA
AAGGAGATTTGAGGAGAAGAGCAGACCATGAAGCAGAGATGTTTCAGCAAATGCAAGAAGAAAAAGATGTAGTTTCAGCTGTTGCAACTGTACTTTCAGACCTTTGTGGTCCAGGGGAATGGATGGCAATGGCAAAACTTCATTCTGAGGATTTGACAAGTTTAGGCAAACACCATAGCTTGTCAAGTATAACTAAAATT
GGATAATTTTAGATATAATTGTTCGAGTGTGTTATGATTTATGATCCCATTTCCTGCAATAGGTGGTCTTGGCACCGAGATAAATCTCTAGAATTGGATTGAATTTTTGAACATGAAGACCTTTTCAAGTAAACCAATTTAATATGGCTTCAAGATTCCACTATGGCACTTGTAGACTCCAGAATATGATGTGAAAGTTA
GAAACATGGTACCATCAATAGTTTGACTCTATACACAGCTGGTAGTGAG

>TRINITY_DN104571_c1_g1_i3 from sample A4 / Example unspliced isoform:

TGCGGTGATGATTGGAACATATTTACATGGGCTGGGTTGGTAGCCTGTTAACAGAGCAAGCTTATTTTTCTAATCCTGTTTCGATTATCCCAGATCAAAAAGGAGATTTGAGGAGAAGAGCAGACCATGAAGCAGAGATGTTTCAGCAAATGCAAGAAGAAAAAGATGTAGTTTCAGCTGTTGCAACTGTACTTTCAGAC
CTTTGTGGTCCAGGGGAATGGATGGCAATGGCAAAACTTCATTCTGAGgtcagcaattttttctcagatgtcagcatgaagtgaaaacttataattctttataatgattttatgagtgggacttgtaatactagccatataagaaaacagactgaatctgcttatctttcatcagGATTTGACAAGTTTAGGCAAACACC
ATAGCTTGTCAAGTATAACTAAAATTGGATAATTTTAGATATAATTGTTCGAGTGTGTTATGATTTATGATCCCATTTCCTGCAATAGGTGGTCTTGGCACCGAGATAAATCTCTAGAATTGGATTGAATTTTTGAACATGAAGACCTTTTCAAGTAAACCAATTTAATATGGCTTCAAGATTCCACTATGGCACTTGTA
GACTCCAGAATATGATGTGAAAGTTAGAAACATGGTACCATCAATAGTTTGACTCTATACACAGCTGGTAGTGAG