sp|Q9MAT0|PSD1B_ARATH ----> 26S proteasome non-ATPase regulatory subunit 1 homolog B
Intron 1 GTTAACTTTC ... ATTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.43 | 37 | 7 | 12 |
| A2 | 21.13 | 28 | 1 | 14 |
| A3 | 38.18 | 17 | 10 | 11 |
| A4 | 17.95 | 32 | 2 | 12 |
| A5 | 36.36 | 7 | 0 | 8 |
| A6 | 19.1 | 36 | 8 | 9 |
| A7 | 23.23 | 38 | 5 | 18 |
| A8 | 23.64 | 21 | 5 | 8 |
| A9 | 25 | 36 | 5 | 19 |
| A10 | 18.18 | 27 | 3 | 9 |
>TRINITY_DN119161_c0_g1_i2 from sample A3 / Example spliced isoformGCCTTGGCGTACTGTGGAACAGCCAATAACAAGGCTATCCGACGCCTTCTACACTTTGCTGTCTCAGATGTCAGCGATGATGTGCGAAGAACTGCAGTGTTGGACCTTGAGTTTGTTTTATACTAAGAACCTGAGCAGTGTTGGACCTTGAGTTTGTTTTATACTAAGAACCTGAGCAGACACCACGGGTTATATCTTTG
CTTTCTGAATCACACAATCCACATGTTAGGTATGGAGAAACTATAGCAGTTGGTGTTTCGTGTGCTGGTACATGATTGAGTGAAGCCATTTCACTGCTAGAGCCTCTGACATCAGATGTAGTTGATTTTGTTCGTCAAGGGGCTCTTATAGCAATGGCTATGGTTCTTGTTCAGACAAATGAATCACATGAACCACGAGT
AGGTAACTTCAGG
>TRINITY_DN119161_c0_g1_i4 from sample A3 / Example unspliced isoform:CGTGGGCACTTTCAAGCGTTGCCCCTACCTCGCGGCTACGATCCCCATATAAAATTACTTTGCGTTGCTCCAACTCATCCTTCTCGTTCCCCTACTCTCCCAGTAATGTCTTAGCATCATTTCACTCTTTCAGGCCCACGGCCGAACAGAAATCCGGAGAAGCAAGGGTATATACATTGAATATATCACGCATATTCGAG
GTTTTTCAGAGAGGGAAATTCCCGATATCATTTCGAAGAACAAATTTTGAGGGTTTTCGGTCCCAGGGAAGATTTTATTTTCTTTTAAATTCGATTCGAACGAATCTTTGAACGAATACTGTTGAAAGCGTTCGATCTACAACAATGGTTGCTTGCATTAGCTCAGCCAGCGGGCTGCTGGCAATGCTCAACGAAGAACA
TCCGATGCTCAAGCTTCACGCGCTGACGAATCTTAACAGACTCGTGGACAATTTTTGGCCGGAGATTTCAACCAGCGTCTCTATAATAGAAAGCTTATATGAAGATGAAGGTTTTGATCAACGACAGCTTGCTGGACTGGTGGCTTCAAAGGTTTTTTATTACCTTGGTGAGCTCAACGACTCCTTGTCGTATGCGCTAG
GTGCTGGACCCTTGTTTAATGTGTCAGAGGATTCAGATTACGTGCATGCTTTGCTTGCTAAAGCCATAGATGAGTACTCCAGTCTTCGCATGAAAGCTGCAGAATCAAGTAAAGATACAGTGGAGATAGACCCTAGACTAGAGGAAATAGTAGAAAGAATGCTTGACAAGTGCATACTAGATGGCAAGTTCCAGCAGGCA
TTGGGAATTGCATTGGAGTGCCGAAGACTTGATAAGTTAGAAGAGTCGATCTTAAAAAGTGATAATGTTGTTGGAATGCTTTCGTACTGCATTAATGTTTCTCATGGATTTGTCAGTAGAAGAGAGTATCGACACGAGGTTCTTGCACTCCTTGTTAAAATTTATCAAAAACTACCGTCACCTGATTATTTAAGCATTTG
TCAGTGCCTCATGTTTCTAGATAAGCCTGCGAATGTTGCAAGTATATTGGAGAAGCTCCTAAGAGGGGACAAGGATGATGCCTTGTTGGCCTTTCAGATAGCATTTGATTTGTTTGAGAATGAGGATCAAGCTTTCCTGATAAATGTTAGAAATCAACTTCCTGAGCCCAAGCATCAAGGCACCAGAAGTGCAGATGCTG
GACAATCTTCAGGAGTGCAGGGTGATGTTTCTAATAATGGTAACACTGCAGCTCAAACGCCTGTTGCAATGGATACCTCTGATGATGTCCAAATGGCAGATGGTGCCACTGTTCCCAGTGGAGCTGATGAGGAATTGGATGCAGTAGAATCCGTTTATGCAGAAAGACTAGTGAAGATTAAAGGGATTTTATCTGGTGAA
ACGGCTATACATCTAATATTACAGTTTTTGTACAGTCACAACAGGTCAGATCTGCTCATACTGAAGACCATAAAACAGTCTGTTGAAATGCGCAATAGTGTATGCCACAGTGCTACCATTTATGCCAATGCTTTGATGCATGCTGGAACAACTGCAGACACTTTCCTAAGAGAAAATTTGGAATGGCTGAGCAGAGCCAC
AAACTGGGCAAAGTTCAGTGCTACTGCTGGCTTGGGAGTCATTCACAGAGGTCATCTTCAACAAGGTCGTTCTTTGATGGCTCCTTACCTTCCACAGAATGGTGCTAGTGGAGGTGGAAGTCCCTTTTCTGAGGGTGGAGCCCTATATGCCCTGGGACTTATACATGCAAACCATGGAGAAGGGATCAAGCAGTTCCTTC
GTGAAAGCTTAAGCAGCGCAAATCTTGAAGTAATTCAGCATGGTGCATGCTTGGGTTTGGGATTGGCAGCTTTAGGAACTGCTGATGAAGAAATTTATGATGAAGTCAGAACTGTTCTCTATACAGATAGTGCAGTTGCTGGAGAAGCTGCAGGTATTAGCATGGGTCTGCTTATGGTTGGGACTGCAAGTGAAAAAGCT
GGTGAAATGCTTCAATATGCACATGAAACACAACATGAGAAGATTATCAGGGGTTTGGCTCTTGGAATAGCCCTTACTGTTTATGGAAGGGAAGAAGAGGCAGATACACTTATTGAACAAATGACAAGGGATCAGGATCCTATTTTGCGATACGGTGGAATGTATGCACTAGCCTTGGCGTACTGTGGAACAGCCAATAA
CAAGGCTATCCGACGCCTTCTACACTTTGCTGTCTCAGATGTCAGCGATGATGTGCGAAGAACTGCAGTGTTGGACCTTGAGTTTGTTTTATACTAAGAACCTGAGCAGTGTTGGACCTTGAGTTTGTTTTATACTAAGAACCTGAGCAGgttaactttctttgcatgtttctgattcaatgctttcttattgatttcaa
aatctaaaccatcttgacaggaatatattcttttggtcaaaacacgagtcgaattatttcacacaaatacataggcatcattactgttgtttctatattcctacgttgatttgacgaatttccttgtattttcacagACACCACGGGTTATATCTTTGCTTTCTGAATCACACAATCCACATGTTAGGTATGGAGAAACT
ATAGCAGTTGGTGTTTCGTGTGCTGGTACATGATTGAGTGAAGCCATTTCACTGCTAGAGCCTCTGACATCAGATGTAGTTGATTTTGTTCGTCAAGGGGCTCTTATAGCAATGGCTATGGTTCTTGTTCAGACAAATGAATCACATGAACCACGAGTAGGTAACTTCAGGTATGTTCTCCCTTGGACTTTACAATGGCT
AATGAGTACTACATAGAAATTCAAATTTTAAAAGCAAATAGTCCAACAGTTCACCAAATTGTTTTCAAAATGTTGGTCTATACCATAGTGCAATTTTCACTCTGTTCAAATGCTTCATGCCATTGTTTCAGGCGTCAATTGGAGAAGATAATTCTCGATAAGCATGAGGACACCATGAGTAAGATGGGTGCAATTTTGGC
TTCTGGTATTTTAGATGCAGGTGGCAGAAATGTAACTATTAAAGTACTTTCCAGGTCAAAACATGATAGAATGACTGCTGTTATTGGAATGGCAGTCTTCACACAGTTTTGGTATTGGTATCCACTTATCTATTTTTTGAGTCTTTCTTTCGCACCGACTGCTTTTATTGGGCTTAACTATGACTTGAAGACCCCAAAGT
TTGAATTTATATCTAATGCAAAACCTTCATTGTTTGACTATCCCCGCCCAATGGCACCTCCCGCAACTACCTCAGCTGCAAAGCTACCAACAACTGTTTTGTCAACACCAGCAAGGGATAAAACCAGAGGAAAAAGAGACGTAGATCATAAAACTACAGTTGAAAAATTATCTGGTGATGATGGTAATACATCTATATTT
GCTAATGGTGGTGCAGGCTCTGGAAAGGGCCCAAACTCTAGTTATAAGGATGGTGAACCAATGCAGGTAATTAATGTTCCTGTTAAGGTGCTTTTTGTTAAGAGGGGTTTCTTTTAAAAATGAACCATAAAAGTACCAAATAACATATCGGTGGCATTTAATACAGGGATAATGGTGATTTTTGTTTGTTTGTTTCTCAG
TTTACTTGTTTTTTGGTAAATAGTAATGTTCTTCCTCCTATTTTGATTTGATAATGGTCATTTGGATCCAAATTTGGAGATTATTATTGATAACAAAAGGCTAAAAATTTGATTCATCCTATGCATAAATCATCCCAGATTTTTTATCCGGTGTCTTGTACATTACTGCAGATGTAGTCGCTAGTGCTCTTAAGCAGTAC
CATTGTCAGCCCATATTTACCCTGTATGGTTGTCCATATAAATCAAAATAAATGTCCACACATCCTCTATCTCGGACAAATGACATTCCACCCACCTGTACCCCTCTCCTAACCATACCTCCAACTCCTTAGTCCAATTCTTCCCTACCATCCATCTTCCTCATTTGGGTCTATGGGTACTTGGAGTCTCCAAG
Intron 2 GTAAGCATCT ... ATTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.12 | 32.8 | 22 | 13 |
| A2 | 54.55 | 5 | 6 | 0 |
| A3 | 38.89 | 11 | 7 | 4 |
| A4 | 54.29 | 16 | 19 | 5 |
| A5 | 60 | 4 | 6 | 2 |
| A6 | 45.31 | 35 | 29 | 7.3 |
| A7 | 31.58 | 26 | 12 | 2 |
| A8 | 36.67 | 19 | 11 | 4 |
| A9 | 28.86 | 24.7 | 10 | 4 |
| A10 | 37.25 | 32 | 19 | 9.7 |
>TRINITY_DN119161_c0_g1_i15 from sample A3 / Example spliced isoformACCTTCCACCGACTAAAGCCCGAATGCATGAGAAGTAGGGGGGAAAAAAGAAAAAAAAGTCAGTCTAGGGTTTTAGAAACTCTGTAATGAGTTCTTTTGATTTATGATGCTCAACGATCCTCAGGGAAGGCACGGCCCCTTGAATGCGCAGCGTTGCATCGGGTTTTCTTTTGGAAATCTCAAGGAAGAAAAGTCTCTGG
AAAAGAAAGTCTCAAGGCGATCTGTAGGTCTGATCTCAAGTGGTCAACATGAAGGGTTGAAATCCGAAATCCCATTCTGTAAGTTCATTCTGAAGGTTTCGATCCTCTGTCTAGATTGGGATGTGAACACTTGGAAAAGGAATGGCTGAGCAGAGCCACAAACTGGGCAAAGTTCAGTGCTACTGCTGGCTTGGGAGTCA
TTCACAGGGGTCATTCACGGGGATCATCTTCAACAAGGTCGTTCTTTGATGGCTCCTTACCTTGCATAGAATGGTGCTAGTGGAGGTGGAAGTCCCTTTTCTGAGGGTGGATCCCTATATTCCTTGGGACTTATACATTCAAACCATGGAGGAGGGATCAAGCAGTTCCTTCATGAAATCTTAAGCAGCGGAAATCTTGA
AGTAATTTAACATGGTGAAGTAACATAGAACTCTCTTTGAATATTTTTCTACTTGAAGCTATCAAAATATTCTTATTGCTTGGATCTACCTAGAAGATATGATCCCGATTTAAAAATGATATGCGGGGGTTTGGATCTTGGGATAGTCCTTATTGTTTATGGAAGGGAAGAAGAGGCAGATACACTTATTGAACAAATGA
CAAGGGATCAGGATCCTATTTTGCGATATGGTGGAATGTATGCACTCGCCTTGGCGTACTGTGGAACAGCCAATAACAAGGCTATCCGACGCCTTCTACACTTTGCTGTCTCAGATGTCAG
>TRINITY_DN119161_c0_g1_i1 from sample A3 / Example unspliced isoform:ACCTTCCACCGACTAAAGCCCGAATGCATGAGAAGTAGGGGGGAAAAAAGAAAAAAAAGTCAGTCTAGGGTTTTAGAAACTCTGTAATGAGTTCTTTTGATTTATGATGCTCAACGATCCTCAGGGAAGGCACGGCCCCTTGAATGCGCAGCGTTGCATCGGGTTTTCTTTTGGAAATCTCAAGGAAGAAAAGTCTCTGG
AAAAGAAAGTCTCAAGGCGATCTGTAGGTCTGATCTCAAGTGGTCAACATGAAGGGTTGAAATCCGAAATCCCATTCTGTAAGTTCATTCTGAAGGTTTCGATCCTCTGTCTAGATTGGGATGTGAACACTTGGAAAAGGAATGGCTGAGCAGAGCCACAAACTGGGCAAAGTTCAGTGCTACTGCTGGCTTGGGAGTCA
TTCACAGGGGTCATTCACGGGGATCATCTTCAACAAGGTCGTTCTTTGATGGCTCCTTACCTTGCATAGAATGGTGCTAGTGGAGGTGGAAGTCCCTTTTCTGAGGGTGGATCCCTATATTCCTTGGGACTTATACATTCAAACCATGGAGGAGGGATCAAGCAGTTCCTTCATGAAATCTTAAGCAGCGGAAATCTTGA
AgtaagcatctgctttggttacatatatgcactattttataataaaaattttgattcaccctatttctgcagtttgttttactctcaaagggaacccttacagatgtgatgtaatttttacagGTAATTTAACATGGTGAAGTAACATAGAACTCTCTTTGAATATTTTTCTACTTGAAGCTATCAAAATATTCTTATTG
CTTGGATCTACCTAGAAGATATGATCCCGATTTAAAAATGATATGCGGGGGTTTGGATCTTGGGATAGTCCTTATTGTTTATGGAAGGGAAGAAGAGGCAGATACACTTATTGAACAAATGACAAGGGATCAGGATCCTATTTTGCGATATGGTGGAATGTATGCACTCGCCTTGGCGTACTGTGGAACAGCCAATAACA
AGGCTATCCGACGCCTTCTACACTTTGCTGTCTCAGATGTCAG
Intron 3 GTAATTAATG ... ATTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.56 | 67 | 3 | 23 |
| A2 | 21.54 | 51 | 5 | 14 |
| A3 | 23.3 | 79 | 18 | 24 |
| A4 | 26.76 | 52 | 12 | 19 |
| A5 | 25 | 63 | 2 | 21 |
| A6 | 20.63 | 300 | 8 | 78 |
| A7 | 20.36 | 223 | 14 | 57 |
| A8 | 25.33 | 224 | 7 | 76 |
| A9 | 17.72 | 209 | 11 | 45 |
| A10 | 21.95 | 96 | 5 | 27 |
>TRINITY_DN45282_c0_g2_i2 from sample A8 / Example spliced isoformGTAGATCATAAAACTACAGTTGAAAAATTATCTGGTGATGATGGTAATACATCTATATTTGCTAATGGTGGTGCAGGCTCTGGAAAGGGCCCAAACTCTAGTTATAAGGATGGTGAACCAATGCAGGTTGATGGTACATCTGACAAGAAAACTGAAGTGGACCTATCTTCAGAGGTTCTCACAAATCCAGCTAGGGTTGT
GTACCAGCACAGGAAAACTATATCAAATTTTTTGAAGGGAGTAGATACATGCCTATTAAGCCAGCACGCTCGGGTTTTGTTCTACTAAGG
>TRINITY_DN45282_c0_g2_i17 from sample A8 / Example unspliced isoform:GTAGATCATAAAACTACAGTTGAAAAATTATCTGGTGATGATGGTAATACATCTATATTTGCTAATGGTGGTGCAGGCTCTGGAAAGGGCCCAAACTCTAGTTATAAGGATGGTGAACCAATGCAGgtaattaatgttcctgttaaggtgctttttgttaagaggggtttcttttaaaaatgaaccataaaagtaccaaa
taacatatcggtggcatttaatacagggataatggtgatttttgtttgtttgtttctcagtttacttgttttttggtaaatagtaatgtacttcctcctattttgatttgataatggtcatttggatccaaatttggagattattattgataacaaaaggctaaaaatttgattcatcctatgcataaatcatcccagat
tttttatccagtgtcttgtacattactgcagatgcagtcgctagtgctcttaagcagtgccattgtcagcccatatttaccctgtatggttgtccatataaatcaaaataaatatccacacatcctcgaagagtaccactgtcagcctatatttaccctttatggttgtccatataaatcaaaataaatatccacacatc
ctctgtctcggacaaatgacattccacccaactgtacccctctcctaaccatacctccaactccttagtccaattcttccctaccatccatctttctcatttgggtctaggggtacttggagtcttcaagaaatatggcattttttggtgtgtgtgtatgtctaagttctaaccaacaacatgtgtatctaataacaaca
atttcgatcactgctctctttccgtggataaacacacacacacacattacatttttcaatcttgatttattggttattattgcagGTTGATGGTACATCTGACAAGAAAACTGAAGTGGACCTATCTTCAGAGGTTCTCACAAATCCAGCTAGGGTTGTGTACCAGCACAGGAAAACTATATCAAATTTTTTGAAGGGAG
TAGATACATGCCTATTAAGCCAGCACGCTCGGGTTTTGTTCTACTAAGG
Intron 4 GTAATTAATG ... ATTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.56 | 67 | 3 | 23 |
| A2 | 21.54 | 51 | 5 | 14 |
| A3 | 23.3 | 79 | 18 | 24 |
| A4 | 26.76 | 52 | 12 | 19 |
| A5 | 25 | 63 | 2 | 21 |
| A6 | 20.63 | 300 | 8 | 78 |
| A7 | 20.36 | 223 | 14 | 57 |
| A8 | 25.33 | 224 | 7 | 76 |
| A9 | 17.72 | 209 | 11 | 45 |
| A10 | 21.95 | 96 | 5 | 27 |
>TRINITY_DN45282_c0_g2_i2 from sample A8 / Example spliced isoformGTAGATCATAAAACTACAGTTGAAAAATTATCTGGTGATGATGGTAATACATCTATATTTGCTAATGGTGGTGCAGGCTCTGGAAAGGGCCCAAACTCTAGTTATAAGGATGGTGAACCAATGCAGGTTGATGGTACATCTGACAAGAAAACTGAAGTGGACCTATCTTCAGAGGTTCTCACAAATCCAGCTAGGGTTGT
GTACCAGCACAGGAAAACTATATCAAATTTTTTGAAGGGAGTAGATACATGCCTATTAAGCCAGCACGCTCGGGTTTTGTTCTACTAAGG
>TRINITY_DN45282_c0_g2_i3 from sample A8 / Example unspliced isoform:GTAGATCATAAAACTACAGTTGAAAAATTATCTGGTGATGATGGTAATACATCTATATTTGCTAATGGTGGTGCAGGCTCTGGAAAGGGCCCAAACTCTAGTTATAAGGATGGTGAACCAATGCAGgtaattaatgttcctgttaaggtgctttttgttaagaggggtttcttttaaaaatgaaccataaaagtaccaaa
taacatatcggtggcatttaatacagggataatggtgatttttgtttgtttgtttctcagtttacttgttttttggtaaatagtaatgtacttcctcctattttgatttgataatggtcatttggatccaaatttggagattattattgataacaaaaggctaaaaatttgattcatcctatgcataaatcatcccagat
tttttatccagtgtcttgtacattactgcagatgcagtcgctagtgctcttaagcagtgccattgtcagcccatatttaccctgtatggttgtccatataaatcaaaataaatatccacacatcctcgaagagtaccactgtcagcctatatttaccctttatggttgtccatataaatcaaaataaatatccacacatc
ctctgtctcggacaaatgacattccacccaactgtacccctctcctaaccatacctccaactccttagtccaattcttccctaccatccatctttctcatttgggtctaggggtacttggagtcttcaagaaatatggcattttttggtgtgtgtgtatgtctaagttctaaccaacaacatgtgtatctaataacaaca
atttcgatcactgctctctttccgtggataaacacacacacacattacatttttcaatcttgatttattggttattattgcagGTTGATGGTACATCTGACAAGAAAACTGAAGTGGACCTATCTTCAGAGGTTCTCACAAATCCAGCTAGGGTTGTGTACCAGCACAGGAAAACTATATCAAATTTTTTGAAGGGAGTA
GATACATGCCTATTAAGCCAGCACGCTCGGGTTTTGTTCTACTAAGG
Intron 5 GTAAGTTCAT ... ACTCCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.62 | 8.5 | 28 | 16 |
| A2 | 90.1 | 1.5 | 16 | 11 |
| A3 | 78.21 | 3.5 | 16 | 9 |
| A4 | 70.84 | 10 | 26 | 22 |
| A5 | 72.91 | 2 | 8 | 2 |
| A6 | 69.74 | 13.5 | 31 | 23 |
| A7 | 71.64 | 8 | 26 | 7 |
| A8 | 64.37 | 7.5 | 15 | 11 |
| A9 | 69.69 | 8.5 | 26 | 5 |
| A10 | 65.47 | 13 | 26 | 14 |
>TRINITY_DN39448_c0_g1_i2 from sample A6 / Example spliced isoformGAGGAATAGAAGTGAAGTTTTCCGGAATGAGGAACGCCACTTGGTGCAAGCTTCCACCTGTCTGTGTAAGAACACAAGAAACAAAGACGCCACTTCTCATCTCAGGTAGGAGGTGGCACTAATAAACCTTCCACCGACTAAAGCCCTCGGGGGTTAAGAATATACGAATGCATGAGAAGTAGGGGGAAAAAAGAAAACAA
AGTCAGTCTAGGGTTTTAGAAACTCTGTAATGAGTTCTTTTGATTTATGATGCTCAACGATCCTCAGGGAAGGCACGGCCCCTTGAATGCGCAGCTTTGCATCGGGTTTTCTTTTGGAAATCTCAAGGAATGAGAGTCTCTGGAAAAGAAAGTCTCAAGGCGATCTGTAGGTCTGATCTCAAGTGGTCAACATGAAGGGT
TGAAATCCGAAATCCCATTCTTAATGGCGGTAAGGCCAGATCGCTGGCTAATCTGAAAAGGGTTTTTGGATGATACTGGTTGTGTGAAGTTAGTTAGTTCAACTCGCGTGGTAAAGGCTGTAAAGCCAGATCTTTGACTATTCCCAAATCGTTTATTAATTCCTCCTTTCCATGGGATATGGATTATTTACAAGTATTTT
TATAGGGAAGTCGCAGTTGTAGATCTCTGTGGACGCGGCGTCATGTAAACAATTGTTTCCCCCCTTTATAATTTATATCATTAGCCGATGGAGTGTAAAATTATATTGTATATGTATACGACATAGCGAAGTCATAGATCTATGCCTGTGCAAATCCTATTGTCTTATGTTGTAGTGAATTTACGATATATTTATATCTA
CGATATACTGGAGAGCAGTCATAGGTCTCTGCCATTATATTATTATTGTTATATGTCGGAGAGAAATTGCAAAATATCTGCCTATCAGAGTAAAATAGCAGATCTCTGTCGGTATTAATTATTTATATAGAGTGAAATCGCAGACCTCTGTCCATATAATACGATTTCAGTTTGTGGTTATTTTATAGAGATCAGAGATT
TGAACCTCTGCAAATGTACACACACTGTATTTATATTTATTTTAGAAGCTAGAGACTAGAATATGTATGAAGGTGTAGGCTCTGTTTATATCCAGTTTGTTTATGAGAGTCTAGATCTCTGCGGATGCATAAATTTAGCAGGAGTCGACTTTTTTGTTTTCCCTTATTATATAGTAGGTCTTTGTGAAGAACTCTGTGGG
TTAATAGTTTTATCTGAGATGAAACTCAGAAATCATACTGATATTAGTTTTGATTGTCTTGGAAGTACTCCGGATGACATAGGTGGTCATAAGTGGAGAACTATAACAACAGAGTTGTACATTGTAATTTCTATTTGACTAATGGAAATAATTCTTTGTGGACGTAGACCAGAGTTATGGGTGAACCACCGTATATGGCG
TCCCGT
>TRINITY_DN39448_c0_g1_i3 from sample A6 / Example unspliced isoform:GAGGAATAGAAGTGAAGTTTTCCGGAATGAGGAACGCCACTTGGTGCAAGCTTCCACCTGTCTGTGTAAGAACACAAGAAACAAAGACGCCACTTCTCATCTCAGGTAGGAGGTGGCACTAATAAACCTTCCACCGACTAAAGCCCTCGGGGGTTAAGAATATACGAATGCATGAGAAGTAGGGGGAAAAAAGAAAACAA
AGTCAGTCTAGGGTTTTAGAAACTCTGTAATGAGTTCTTTTGATTTATGATGCTCAACGATCCTCAGGGAAGGCACGGCCCCTTGAATGCGCAGCTTTGCATCGGGTTTTCTTTTGGAAATCTCAAGGAATGAGAGTCTCTGGAAAAGAAAGTCTCAAGGCGATCTGTAGGTCTGATCTCAAGTGGTCAACATGAAGGGT
TGAAATCCGAAATCCCATTCTgtaagttcattctgaaggtttcgatcctctgtctagattgggatgtgaacacttggaaaaggttaattactatatgctgccgagagtttgatttcgtaattgcttgtatataaatgctagattcctgtatgatagatagaaaatcgtgaatgctgtatacaaatgacaagttcctatat
gaggttcaatagatcggaaatcctgaacgctggtataaaggttagttacggtacgctcgcaagagatcgaatccgtgattgcttgcataccagtgctagttcctgtataatgtcatcagtttaggaaattacatttatataaccagatcgccggctgatcataaaaaggattatgacatttctgtctgcgtgagtttaat
tacatgttttactcctgtagTAATGGCGGTAAGGCCAGATCGCTGGCTAATCTGAAAAGGGTTTTTGGATGATACTGGTTGTGTGAAGTTAGTTAGTTCAACTCGCGTGGTAAAGGCTGTAAAGCCAGATCTTTGACTATTCCCAAATCGTTTATTAATTCCTCCTTTCCATGGGATATGGATTATTTACAAGTATTTTT
ATAGGGAAGTCGCAGTTGTAGATCTCTGTGGACGCGGCGTCATGTAAACAATTGTTTCCCCCCTTTATAATTTATATCATTAGCCGATGGAGTGTAAAATTATATTGTATATGTATACGACATAGCGAAGTCATAGATCTATGCCTGTGCAAATCCTATTGTCTTATGTTGTAGTGAATTTACGATATATTTATATCTAC
GATATACTGGAGAGCAGTCATAGGTCTCTGCCATTATATTATTATTGTTATATGTCGGAGAGAAATTGCAAAATATCTGCCTATCAGAGTAAAATAGCAGATCTCTGTCGGTATTAATTATTTATATAGAGTGAAATCGCAGACCTCTGTCCATATAATACGATTTCAGTTTGTGGTTATTTTATAGAGATCAGAGATTT
GAACCTCTGCAAATGTACACACACTGTATTTATATTTATTTTAGAAGCTAGAGACTAGAATATGTATGAAGGTGTAGGCTCTGTTTATATCCAGTTTGTTTATGAGAGTCTAGATCTCTGCGGATGCATAAATTTAGCAGGAGTCGACTTTTTTGTTTTCCCTTATTATATAGTAGGTCTTTGTGAAGAACTCTGTGGGT
TAATAGTTTTATCTGAGATGAAACTCAGAAATCATACTGATATTAGTTTTGATTGTCTTGGAAGTACTCCGGATGACATAGGTGGTCATAAGTGGAGAACTATAACAACAGAGTTGTACATTGTAATTTCTATTTGACTAATGGAAATAATTCTTTGTGGACGTAGACCAGAGTTATGGGTGAACCACCGTATATGGCGT
CCCGT
Intron 6 GTAATTTAAC ... GTAACTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.59 | 32 | 33 | 38 |
| A2 | 61.54 | 15 | 5 | 43 |
| A3 | 51.65 | 22 | 11 | 36 |
| A4 | 53.66 | 19 | 16 | 28 |
| A5 | 63.64 | 8 | 4 | 24 |
| A6 | 48.1 | 75 | 35 | 104 |
| A7 | 52.56 | 51 | 26 | 87 |
| A8 | 52.07 | 52 | 19 | 94 |
| A9 | 50.53 | 47 | 25 | 71 |
| A10 | 48.47 | 42 | 32 | 47 |
>TRINITY_DN44985_c1_g1_i1 from sample A9 / Example spliced isoformGTTGATGAGAGGAGTTAGTCGAGGAATAGAAGTGAAGTTTTCCGGAATGAGGAACGCCACTTGGTGCAAGCTTCCACCTGTCTGTGTAAGAACACAAGAAACAAAGACGCCACTTCTCATCTCAGGTAGGAGGTGGCACTAATAAACCTTCCACCGACTAAAGCCCTCGGGGGTTAAGAATATACGAATGCATGAGAAGT
AGGGGGAAAAAAGAAAACAAAGTCAGTCTAGGGTTTTAGAAACTCTGTAATGAGTTCTTTTGATTTATGATGCTCAACGATCCTCAGGGAAGGCACGGCCCCTTGAATGCGCAGCTTTGCATCGGGTTTTCTTTTGGAAATCTCAAGGAATGAGAGTCTCTGGAAAAGAAAGTCTCAAGGCGATCTGTAGGTCTGATCTC
AAGTGGTCAACATGAAGGGTTGAAATCCGAAATCCCATTCTGTAAGTTCATTCTGAAGGTTTCGATCCTCTGTCTAGATTGGGATGTGAACACTTGGAAAAGGAATGGCTGAGCAGAGCCACAAACTGGGCAAAGTTCAGTGCTACTGCTGGCTTGGGAGTCATTCACAGGGGTCATTCACGGGGATCATCTTCAACAAG
GTCGTTCTTTGATGGCTCCTTACCTTGCATAGAATGGTGCTAGTGGAGGTGGAAGTCCCTTTTCTGAGGGTGGATCCCTATATTCCTTGGGACTTATACATTCAAACCATGGAGGAGGGATCAAGCAGTTCCTTCATGAAATCTTAAGCAGCGGAAATCTTGAAGTTGATGGTACATCTGACAAGAAAACTGAAGTGGAC
CTATCTTCAGAGGTTCTCACAAATCCAGCTAGGGTTGTGTACCAGCACAGGAAAACTATATCAAATTTTTTGAAGGGAGTAGATACATGCCTATTAAGCCAGCACGCTCGGGTTTTGTTCTACTAAGGGACATGCA
>TRINITY_DN44985_c1_g1_i9 from sample A9 / Example unspliced isoform:GTTGATGAGAGGAGTTAGTCGAGGAATAGAAGTGAAGTTTTCCGGAATGAGGAACGCCACTTGGTGCAAGCTTCCACCTGTCTGTGTAAGAACACAAGAAACAAAGACGCCACTTCTCATCTCAGGTAGGAGGTGGCACTAATAAACCTTCCACCGACTAAAGCCCTCGGGGGTTAAGAATATACGAATGCATGAGAAGT
AGGGGGAAAAAAGAAAACAAAGTCAGTCTAGGGTTTTAGAAACTCTGTAATGAGTTCTTTTGATTTATGATGCTCAACGATCCTCAGGGAAGGCACGGCCCCTTGAATGCGCAGCTTTGCATCGGGTTTTCTTTTGGAAATCTCAAGGAAGTTAGGTATGGAGCAGCTATAGCAGTTGGTGTTTCTTGTGCTGGTACATG
ATTGAGTGAAGCCATTTCACTGCTAGAGCCTCTGACATCAGATGTAGTTGATTTTGTTCGTCAAGGGGCTCTTATAGCAATGGCTATGAGTGGTTCTTGTTCAAACAAATGAATCACATGAACCACGAGTAGGTAACTTCAGGAACATCGGCCTGTCCTGAAGGAAAATTTTACTGCAGAAATGTGGGGCATACACCTCT
TTTACTATTCTCATCTCGGGTGAATGATGAGTCTCTGGAAAAGAAAGTCTCAAGGCGATCTGTAGGTCTGATCTCAAGTGGTCAACATGAAGGGTTGAAATCCGAAATCCCATTCTGTAAGTTCATTCTGAAGGTTTCGATCCTCTGTCTAGATTGGGATGTGAACACTTGGAAAAGGAATGGCTGAGCAGAGCCACAAA
CTGGGCAAAGTTCAGTGCTACTGCTGGCTTGGGAGTCATTCACAGGGGTCATTCACGGGGATCATCTTCAACAAGGTCGTTCTTTGATGGCTCCTTACCTTGCATAGAATGGTGCTAGTGGAGGTGGAAGTCCCTTTTCTGAGGGTGGATCCCTATATTCCTTGGGACTTATACATTCAAACCATGGAGGAGGGATCAAG
CAGTTCCTTCATGAAATCTTAAGCAGCGGAAATCTTGAAgtaatttaacatggtgaagtaacatagaactctctttgaatatttttctacttgaagctatcaaaatattcttattgcttggatctacctagaagatatgatcccgatttaaaaatgatatgcgggggtttggatcttgggatagtccttattgtttatgg
aagggaagaagaggcagatacacttactgaacaaatgacaagggatcaggatcctattttgcgatatggtggaatgtatgcactcgccttggcgtacggtggaacaaccaataagaaggctatccaattccttctacactttgttgtctcagatgtcagcgatgatgtgcgaagaactgcagtgttggaccttgagtttg
ttttatactaagaacctgagcagacaccacgggttatatctttgctttctgagtcacacaatccacatgttaggtatggagaaactatagcagttggtgtttcgtgtgctggtacatgattgagtgaagccatttcactgctacagcctctgacgttagatgtagttgattttgttcgtcaaggagctcttatagcaatg
gctatggttcttgtttttaaacaaatgaatcacatgaaccacgagtaggtaacttcagGTTGATGGTACATCTGACAAGAAAACTGAAGTGGACCTATCTTCAGAGGTTCTCACAAATCCAGCTAGGGTTGTGTACCAGCACAGGAAAACTATATCAAATTTTTTGAAGGGAGTAGATACATGCCTATTAAGCCAGCACG
CTCGGGTTTTGTTCTACTAAGGGACATGCA
Intron 7 GTTAACTTTC ... ATTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.43 | 37 | 7 | 12 |
| A2 | 21.13 | 28 | 1 | 14 |
| A3 | 35.85 | 17 | 10 | 9 |
| A4 | 16.88 | 32 | 2 | 11 |
| A5 | 39.13 | 7 | 0 | 9 |
| A6 | 19.1 | 36 | 8 | 9 |
| A7 | 23.23 | 38 | 5 | 18 |
| A8 | 23.64 | 21 | 5 | 8 |
| A9 | 22.58 | 36 | 5 | 16 |
| A10 | 16.92 | 27 | 3 | 8 |
>TRINITY_DN119161_c0_g1_i2 from sample A3 / Example spliced isoformGCCTTGGCGTACTGTGGAACAGCCAATAACAAGGCTATCCGACGCCTTCTACACTTTGCTGTCTCAGATGTCAGCGATGATGTGCGAAGAACTGCAGTGTTGGACCTTGAGTTTGTTTTATACTAAGAACCTGAGCAGTGTTGGACCTTGAGTTTGTTTTATACTAAGAACCTGAGCAGACACCACGGGTTATATCTTTG
CTTTCTGAATCACACAATCCACATGTTAGGTATGGAGAAACTATAGCAGTTGGTGTTTCGTGTGCTGGTACATGATTGAGTGAAGCCATTTCACTGCTAGAGCCTCTGACATCAGATGTAGTTGATTTTGTTCGTCAAGGGGCTCTTATAGCAATGGCTATGGTTCTTGTTCAGACAAATGAATCACATGAACCACGAGT
AGGTAACTTCAGG
>TRINITY_DN119161_c0_g1_i9 from sample A3 / Example unspliced isoform:CGTGGGCACTTTCAAGCGTTGCCCCTACCTCGCGGCTACGATCCCCATATAAAATTACTTTGCGTTGCTCCAACTCATCCTTCTCGTTCCCCTACTCTCCCAGTAATGTCTTAGCATCATTTCACTCTTTCAGGCCCACGGCCGAACAGAAATCCGGAGAAGCAAGGGTATATACATTGAATATATCACGCATATTCGAG
GTTTTTCAGAGAGGGAAATTCCCGATATCATTTCGAAGAACAAATTTTGAGGGTTTTCGGTCCCAGGGAAGATTTTATTTTCTTTTAAATTCGATTCGAACGAATCTTTGAACGAATACTGTTGAAAGCGTTCGATCTACAACAATGGTTGCTTGCATTAGCTCAGCCAGCGGGCTGCTGGCAATGCTCAACGAAGAACA
TCCGATGCTCAAGCTTCACGCGCTGACGAATCTTAACAGACTCGTGGACAATTTTTGGCCGGAGATTTCAACCAGCGTCTCTATAATAGAAAGCTTATATGAAGATGAAGGTTTTGATCAACGACAGCTTGCTGGACTGGTGGCTTCAAAGGTTTTTTATTACCTTGGTGAGCTCAACGACTCCTTGTCGTATGCGCTAG
GTGCTGGACCCTTGTTTAATGTGTCAGAGGATTCAGATTACGTGCATGCTTTGCTTGCTAAAGCCATAGATGAGTACTCCAGTCTTCGCATGAAAGCTGCAGAATCAAGTAAAGATACAGTGGAGATAGACCCTAGACTAGAGGAAATAGTAGAAAGAATGCTTGACAAGTGCATACTAGATGGCAAGTTCCAGCAGGCA
TTGGGAATTGCATTGGAGTGCCGAAGACTTGATAAGTTAGAAGAGTCGATCTTAAAAAGTGATAATGTTGTTGGAATGCTTTCGTACTGCATTAATGTTTCTCATGGATTTGTCAGTAGAAGAGAGTATCGACACGAGGTTCTTGCACTCCTTGTTAAAATTTATCAAAAACTACCGTCACCTGATTATTTAAGCATTTG
TCAGTGCCTCATGTTTCTAGATAAGCCTGCGAATGTTGCAAGTATATTGGAGAAGCTCCTAAGAGGGGACAAGGATGATGCCTTGTTGGCCTTTCAGATAGCATTTGATTTGTTTGAGAATGAGGATCAAGCTTTCCTGATAAATGTTAGAAATCAACTTCCTGAGCCCAAGCATCAAGGCACCAGAAGTGCAGATGCTG
GACAATCTTCAGGAGTGCAGGGTGATGTTTCTAATAATGGTAACACTGCAGCTCAAACGCCTGTTGCAATGGATACCTCTGATGATGTCCAAATGGCAGATGGTGCCACTGTTCCCAGTGGAGCTGATGAGGAATTGGATGCAGTAGAATCCGTTTATGCAGAAAGACTAGTGAAGATTAAAGGGATTTTATCTGGTGAA
ACGGCTATACATCTAATATTACAGTTTTTGTACAGTCACAACAGGTCAGATCTGCTCATACTGAAGACCATAAAACAGTCTGTTGAAATGCGCAATAGTGTATGCCACAGTGCTACCATTTATGCCAATGCTTTGATGCATGCTGGAACAACTGCAGACACTTTCCTAAGAGAAAATTTGGAATGGCTGAGCAGAGCCAC
AAACTGGGCAAAGTTCAGTGCTACTGCTGGCTTGGGAGTCATTCACAGAGGTCATCTTCAACAAGGTCGTTCTTTGATGGCTCCTTACCTTCCACAGAATGGTGCTAGTGGAGGTGGAAGTCCCTTTTCTGAGGGTGGAGCCCTATATGCCCTGGGACTTATACATGCAAACCATGGAGAAGGGATCAAGCAGTTCCTTC
GTGAAAGCTTAAGCAGCGCAAATCTTGAAGTAATTCAGCATGGTGCATGCTTGGGTTTGGGATTGGCAGCTTTAGGAACTGCTGATGAAGAAATTTATGATGAAGTCAGAACTGTTCTCTATACAGATAGTGCAGTTGCTGGAGAAGCTGCAGGTATTAGCATGGGTCTGCTTATGGTTGGGACTGCAAGTGAAAAAGCT
GGTGAAATGCTTCAATATGCACATGAAACACAACATGAGAAGATTATCAGGGGTTTGGCTCTTGGAATAGCCCTTACTGTTTATGGAAGGGAAGAAGAGGCAGATACACTTATTGAACAAATGACAAGGGATCAGGATCCTATTTTGCGATACGGTGGAATGTATGCACTAGCCTTGGCGTACTGTGGAACAGCCAATAA
CAAGGCTATCCGACGCCTTCTACACTTTGCTGTCTCAGATGTCAGCGATGATGTGCGAAGAACTGCAGTGTTGGACCTTGAGTTTGTTTTATACTAAGAACCTGAGCAGTGTTGGACCTTGAGTTTGTTTTATACTAAGAACCTGAGCAGgttaactttctttgcatgtttctgattcaatgctttcttattgatttcaa
aatctaaaccatcttgacaagaatatatttttttggtcaaaatcacgagtggaattatttcacacaaatacataggcatcattactgttgtttctatattcctacgttgatttgacgaatttccttgtattttcacagACACCACGGGTTATATCTTTGCTTTCTGAATCACACAATCCACATGTTAGGTATGGAGAAAC
TATAACAGTTGGTGTTTCTTGTGCTGGTACATGATTGAGTGAAGCCATTTCACTGCTAGAGCCTCTGACATCAGATGTAGTTGATTTTGTTCGTCAAGGGGCTCTTATAGCAATGGCTATGGTTCTTGTTCAAACAAATGAATCACATGAACCACGAGTAGGTAACTTCAGGTATGTTCTCCCTTGGACTTTACAATGGC
TAATGAGTACTACATAGAAATTCAAATTTTAAAAGCAAATAGTCCAACAGTTCACCAAATTGTTTTCAAAATGTTGGTCTATACCATAGTGCAATTTTCACTCTGTTCAAATGCTTCATGCCATTGTTTCAGGCGTCAATTGGAGAAGATAATTATTGATAAGTACGAGAACACCCTGAGTAACATGGGTGCAATTATGG
CTTCTTGTATTTTAGATGCAGGAGGTAGAAATGTAACCAAGTTCTGTTTAAGTAGAAAGGAGAAATTTGGCCACTGGACATATATAAATGTAGAAAACTAATTTGATC