NA ----> NA


Intron 1 GTCTTGAACG ... GTTTGAAAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A178.79145549
A261.97274444
A368.54286062
A457.89364653
A560212736
A668.563138136
A764.8989168161
A866.67336567
A965.06478689
A1062.1275112134



>TRINITY_DN43333_c1_g2_i4 from sample A9 / Example spliced isoform
CTAAGCGGTTCTATGATCTTGATTCCGCGGTCCTATTTGTAGAGAAGTTCTATTATCTACCATAATTTGACACGAGATAGGAGGCTTATGCTGAATTATTGGGGTGGAGCAGATGCAGGTCGATATCAAACTTGCTTTTGGCCGTTAAGAGTCCCAAATCTACAGCATATTTGTAATTGTAACTCGTTGGCCTGTCAGCC
TTATTTGATAGGAACCCATGCCTCGATATGTCGACAAAACTGTCACGAGTATTCTTCAGAAGAGGCGGTGGACTAGCTGTATCATAATTATAAACATTGTAATGCCATAAGGTTACACGTTATCCCTGGACATGGCCCAGGATATGGCTATTGCCGTCGACCACACACAAGGTATTAATTGACTTGACCCAACTGGGGAA
GGCAATTCTGAATGGTAGTTGGAATCAAGTTTTCTACTCCCAAAAGCATGGACACTTGGCCAACATCTAGCTCTCAACTATCCTATTCTTACAGGCAACCCTACTGTTACCACCCACCTGTTAAGCTCTCTCGTTTGTTTATTAATGGTTATCCACCTCTCAACGTGACGAATGCGCACTCCCGAAGCTTCAAGATTCTA
TATCAAGCAGATTGATCACTCATTTATTTATTAGTGGTTATCCACCTCTGAACGTGACGAATGTGCATTCCCGAAGCTTCAAGACTCTATATCTTGCTCCCAATTTCTTTCCTCACAAAAGCAGATTGATCACGTTTGAGGCCCCTGCAAGCACGGGAATCGGGAGAGACAAGTCACAAGGAGTAGAAGAGAAGCAAGAT
ATATAGGAGAAAGAGAAATGGAGAGTAATATGATACTTGATGGGTTGAAGCTGGAGCAACTTGTTGAAGACAATGAGGCTTTTGCCAAGTACGTGGACAAGAGGTTCGAAGCGCTGGATAAAGATCACAATGGCAGACTTTCTCCGCAAGAGCTTCGGCCGGCCGTGGCCGCCATTGGCATTGCCCTGGGACTGCCTGCT
CAAGGCTCCTCCCCCGACGCCGACATCATCTATGACCAGAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAGAACTATGCCCGCAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAGAAATTGACAAATCTGAACTGTCTCTGGAAAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGC
CTCCCGCTTCTGATCCATGGGTGATGGAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCCGGAGCGAAATGTGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAATCGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGAT
GGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGATCAGGCTTTGCAACTGATATGGAAATCATTGCCCAAAGACCCTCGTGGAACTTTGCCCAGAGAGTACCTTCGTGTTGCTTTGGACATGATAGCCCCAGCTGCTGGCTTACCACCGTTGGGAGGAGTTGAACAGATGGATCGAGTTGTTTCTGAAAT
TTTTAAAATGGTGAAAGCAGACGAGGGTGGAGTCTTGAAGCAAGACCAATTCAATAAGCTGTTACTGGAGATTCTGGGCAGCCTTATGCTTCAACTCGAGGGAAATCCAATCTCTGTTTCATCCAACGCTGTCGTTGAGTCTGATCAGCCTGACTTCCTTCCTCAGCTGTGATTCTGTATACACAGCTTTCAATGGCTGT
AAATGCTGCACATACTGGCCCATGCCCGGTCCTGAAAGAAACTTAGTGGACCATTAATCCGTACTAGTATTATTATAGTGTTGGTATTTGAGTAACTTCTTGCCATATTCCTTTCAAGTCTCCTGACCGGGGGATCCCTCTTGGACCAGGAAAGAAACTTAGTGGAGCATTAATTCCTTGTATTATTACTTCAGTGTTGG
CATTTGAGTAACTTCTTGCCATATTCATGAGAATCCGTGTTGGACTTCTAGATAACCACTACTCTGTTTGGTATCTGCATGTTCAATTCAACGAAAAAAAATTCTACATATCTCTGTCAAACATAAATGCAGTTACATTGACGGCATTAGTACTTACAATTTATAGTTCTATAATAATTGAATGCTGTCCTCTTAAATAA
ATCAAAAAAAAAAAAAAAATTCTACATATCTCTGTCAAACATAAATGCAGTTACATTGACGGCATTAGTACTTACAATTTATAGTTCTATAATAATTGAATGCTGTCCTCTTAAATAAAAAAAAAAAAAAATATAAAAAAAAAAAAAAATCCATGGCTGCCTCTGAGCGACCTAGAACTTTCGGTCGTTTAAAAGTCTTT
GACTTTTCAAAAATTGTTGGGTATCCTCATCA


>TRINITY_DN43333_c1_g2_i12 from sample A9 / Example unspliced isoform:
CTAAGCGGTTCTATGATCTTGATTCCGCGGTCCTATTTGTAGAGAAGTTCTATTATCTACCATAATTTGACACGAGATAGGAGGCTTATGCTGAATTATTGGGGTGGAGCAGATGCAGGTCGATATCAAACTTGCTTTTGGCCGTTAAGAGTCCCAAATCTACAGCATATTTGTAATTGTAACTCGTTGGCCTGTCAGCC
TTATTTGATAGGAACCCATGCCTCGATATGTCGACAAAACTGTCACGAGTATTCTTCAGAAGAGGCGGTGGACTAGCTGTATCATAATTATAAACATTGTAATGCCATAAGGTTACACGTTATCCCTGGACATGGCCCAGGATATGGCTATTGCCGTCGACCACACACAAGGTATTAATTGACTTGACCCAACTGGGGAA
GGCAATTCTGAATGGTAGTTGGAATCAAGTTTTCTACTCCCAAAAGCATGGACACTTGGCCAACATCTAGCTCTCAACTATCCTATTCTTACAGGCAACCCTACTGTTACCACCCACCTGTTAAGCTCTCTCGTTTGTTTATTAATGGTTATCCACCTCTCAACGTGACGAATGCGCACTCCCGAAGCTTCAAGATTCTA
TATCAAGCAGATTGATCACTCATTTATTTATTAGTGGTTATCCACCTCTGAACGTGACGAATGTGCATTCCCGAAGCTTCAAGACTCTATATCTTGCTCCCAATTTCTTTCCTCACAAAAGCAGATTGATCACGTTTGAGGCCCCTGCAAGCACGGGAATCGGGAGAGACAAGTCACAAGGAGTAGAAGAGAAGCAAGAT
ATATAGGAGAAAGAGAAATGGAGAGTAATATGATACTTGATGGGTTGAAGCTGGAGCAACTTGTTGAAGACAATGAGGCTTTTGCCAAGTACGTGGACAAGAGGTTCGAAGCGCTGGATAAAGATCACAATGGCAGACTTTCTCCGCAAGAGCTTCGGCCGGCCGTGGCCGCCATTGGCATTGCCCTGGGACTGCCTGCT
CAAGGCTCCTCCCCCGACGCCGACATCATCTATGACCAGgtcttgaacgaatatttcataagtggtaaaactgatgggatcagcaaagaggattttcgcacagttctgtctgacattcttttgggtgtggccgacggtttgaaaagAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAGAACTATGCCCG
CAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAGAAATTGACAAATCTGAACTGTCTCTGGAAAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGCCTCCCGCTTCTGATCCATGGGTGATGGAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCCGGAGCGAAATG
TGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAATCGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGATCAGGCTTTGCAACTGATATGGAAATCATTGCCCAAAGACCCTCGTGGA
ACTTTGCCCAGAGAGTACCTTCGTGTTGCTTTGGACATGATAGCCCCAGCTGCTGGCTTACCACCGTTGGGAGGAGTTGAACAGATGGATCGAGTTGTTTCTGAAATTTTTAAAATGGTGAAAGCAGACGAGGGTGGAGTCTTGAAGCAAGACCAATTCAATAAGCTGTTACTGGAGATTCTGGGCAGCCTTATGCTTCA
ACTCGAGGGAAATCCAATCTCTGTTTCATCCAACGCTGTCGTTGAGTCTGATCAGCCTGACTTCCTTCCTCAGCTGTGATTCTGTATACACAGCTTTCAATGGCTGTAAATGCTGCACATACTGGCCCATGCCCGGTCCTGAAAGAAACTTAGTGGACCATTAATCCGTACTAGTATTATTATAGTGTTGGTATTTGAGT
AACTTCTTGCCATATTCCTTTCAAGTCTCCTGACCGGGGGATCCCTCTTGGACCAGGAAAGAAACTTAGTGGAGCATTAATTCCTTGTATTATTACTTCAGTGTTGGCATTTGAGTAACTTCTTGCCATATTCATGAGAATCCGTGTTGGACTTCTAGATAACCACTACTCTGTTTGGTATCTGCATGTTCAATTCAACG
AAAAAAAATTCTACATATCTCTGTCAAACATAAATGCAGTTACATTGACGGCATTAGTACTTACAATTTATAGTTCTATAATAATTGAATGCTGTCCTCTTAAATAAATCAAAAAAAAAAAAAAAATTCTACATATCTCTGTCAAACATAAATGCAGTTACATTGACGGCATTAGTACTTACAATTTATAGTTCTATAAT
AATTGAATGCTGTCCTCTTAAATAAAAAAAAAAAAAAATATAAAAAAAAAAAAAAATCCATGGCTGCCTCTGAGCGACCTAGAACTTTCGGTCGTTTAAAAGTCTTTGACTTTTCAAAAATTGTTGGGTATCCTCATCATATTCCTCATCAAGCATGTGCAAGGTTGCCTATTTTCGATGGAAGTTATGAAATCTCTGCT
AAAAGACACCTTGAACTTTTTAGGGAAATGATTAAAGAGTTATCCATAACCCATGAGGATGTGTGTATGAGACTATTGGCTTCATCTTTCAAAGAAAGAGCTGGGCTCTGGCTTTCGAATTTGAAACCCAATAGCATTTCCG




Intron 2 GTCAGTCCAC ... CCGATTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A1203096
A221.0545177
A318.52551312
A421.9548189
A520.752129
A618.641553932
A717.511061431
A818.09772113
A915.25751314
A1019.48932223



>TRINITY_DN93944_c0_g1_i1 from sample A4 / Example spliced isoform
TCAAGATTCTATATCAAGCAGATTGATCACTCATTTATTTATTAGTGGTTATCCACCTCTGAACGTGACGAATGTGCATTCCCGAAGCTTCAAGACTCTATATCTTGCTCCCAATTTCTTTCCTCACAAAAGCAGATTGATCACGTTTGAGGCCCCTGCAAGCACGGGAATCGGGAGAGACAAGTCACAAGGAGTAGAAG
AGAAGCAAGATATATAGGAGAAAGAGAAATGGAGAGTAATATGATACTTGATGGGTTGAAGCTGGAGCAACTTGTTGAAGACAATGAGGCTTTTGCCAAGTACGTGGACAAGAGGTTCGAAGCGCTGGATAAAGATCACAATGGCAGACTTTCTCCGCAAGAGCTTCGGCCGGCCGTGGCCGCCATTGGCATTGCCCTGG
GACTGCCTGCTCAAGGCTCCTCCCCCGACGCCGACATCATCTATGACCAGGTCTTGAACGAATATTTCATAAGTGGTAAAACTGATGGGATCAGCAAAGAGGATTTTCGCACAGTTCTGTCTGACATTCTTTTGGGTGTGGCCGACGGTTTGAAAAGAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAG
AACTATGCCCGCAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAGAAATTGACAAATCTGAACTGTCTCTGGAAAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGCCTCCCGCTTCTGATCCATGGGTGATGGAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCC
GGAGCGAAATGTGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAATCGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGATCAGGCTTTGCAACTGATATGGAAATCATTGCCCAAAG
ACCCTCGTGGAACTTTGCCCAGAGAGTACCTTCGTGTTGCTTTGGACATGATAGCCCCAGCTGCTGGCTTACCACCGTTGGGAGGAGTTGAACAGATGGATCGAGTTGTTTCTGAAATTTTTAAAATGGTGAAAGCAGACGAGGGTGGAGTCTTGAAGCAAGACCAATTCAATAAGCTGTTACTGGAGATTCTGGGCAGC
CTTATGCTTCAACTCGAGGGAAATCCAATCTCTGTTTCATCCAACGCTGTCGTTGAGTCTGATCAGCCTGACTTCCTTCCTCAGCTGTGATTCTGTATACACAGCTTTCAATGGCTGTAAATGCTGCACATACTGGCCCATGCCCGGTCCTGAAAGAAACTTAGTGGACCATTAATCCGTACTAGTATTATTATAGTGTT
GGTATTTGAGTAACTTCTTGCCATATTCCTTTCAAGTCTCCTGACCGGGGGATCCCTCTTGGACCAGGAAAGAAACTTAGTGGAGCATTAATTCCTTGTATTATTACTTCAGTGTTGGCATTTGAGTAACTTCTTGCCATATTCATGAGAATCCGTGTTGGACTTCTAGATAACCACTACTCTGTTTGGTATCTGCATGT
TCAATTCAACGAAAAAAAATTCTACATATCTC


>TRINITY_DN93944_c0_g1_i4 from sample A4 / Example unspliced isoform:
CTTGAACGAATATTTCATAAGTGGTAAAACTGATGGGATCAGCAAAGAGGATTTTCGCACAGTTCTGTCTGACATTCTTTTGGGTGTGGCCGACGGTTTGAAAAGAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAGAACTATGCCCGCAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAG
AAATTGACAAATCTGAACTGTCTCTGGAAAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGCCTCCCGCTTCTGATCCATGGgtcagtccacaattgcttcatttcttggctctaacttgattttgatcttgattttgaatcacggaaccctcatcctgatccgattgcagGTGATGGAGAAGATTGTAAAACCGG
CAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCCGGAGCGAAATGTGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAATCGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGAT
CAGGCTTTGCAACTGATATGGAAATCATTGCCCAAAGACCCTCGTGGAACTTTGCCCAGAGAGTACCTTCGTGTTGCTTTGGACATGATAGCCCCAGCTGCTGGCTTACCACCGTTGGGAGGAGTTGAACAGATGGATCGAGTTGTTTCTGAAATTTTTAAAATGGTGAAAGCAGACGAGGGTGGAGTCTTGAAGCAAGA
CCAATTCAATAAGCTGTTACTGGAGATTCTGGGCAGCCTTATGCTTCAACTCGAGGGAAATCCAATCTCTGTTTCATCCAACGCTGTCGTTGAGTCTGATCAGCCTGACTTCCTTCCTCAGCTGTGATTCTGTATACACAGCTTTCAATGGCTGTAAATGCTGCACATACTGGCCCATGCCCGGTCCTGAAAGAAACTTA
GTGGACCATTAATCCGTACTAGTATTATTATAGTGTTGGTATTTGAGTAACTTCTTGCCATATTCCTTTCAAGTCTCCTGACCGGGGGATCCCTCTTGGACCAGGAAAGAAACTTAGTGGAGCATTAATTCCTTGTATTATTACTTCAGTGTTGGCATTTGAGTAACTTCTTGCCATATTCATGAGAATCCGTGTTGGAC
TTCTAGATAACCACTACTCTGTTTGGTATCTGCATGTTCAATTCAACGAAAAAAAATTCTACATATCTC




Intron 3 GTCAATATAA ... GGGAATGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A128.89482613
A225.79592021
A317.9957817
A423.634129
A522.534414.611
A621.3134977112
A722.242575493
A820.52249.85871
A920.8618143.452
A1022.0520450.465



>TRINITY_DN114339_c0_g1_i3 from sample A1 / Example spliced isoform
GCTCTCAACTATCCTATTCTTACAGGCAACCTTACTGTTACCACCCACCTGTTAAGCTCTCTCGTTTGTTTATTAATGGTTATCCACCTCTCAACGTGACGAATGCGCACTCCTGAAGCTTCAAGATTCTATATCAAGCAGATTGATCACTCATTTATTTATTAGTGGTTATCCACCTCTGAACGTGACGAATGTGCATT
CCCGAAGCTTCAAGACTCTATATCTTGCTCCCAATTTCTTTCCTCACAAAAGCAGATTGATCACGTTTGAGGCCCCTGCAAGCACGGGAATCGGGAGAGACAAGTCACAAGGAGTAGAAGAGAAGCAAGATATATAGGAGAAAGAGAAATGGAGAGTAATATGATACTTGATGGGTTGAAGCTGGAGCAACTTGTTGAAG
ACAATGAGGCTTTTGCCAAGTACGTGGACAAGAGGTTCGAAGCGCTGGATAAAGATCACAATGGCAGACTTTCTCCGCAAGAGCTTCGGCCGGCCGTGGCCGCCATTGGCATTGCCCTGGGACTGCCTGCTCAAGGCTCCTCCCCCGACGCCGACATCATCTATGACCAGGTCTTGAACGAATATTTCATAAGTGGTAAA
ACTGATGGGATCAGCAAAGAGGATTTTCGCACAGTTCTGTCTGACATTCTTTTGGGTGTGGCCGACGGTTTGAAAAGAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAGAACTATGCCCGCAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAGAAATTGACAAATCTGAACTGTCTCTGGA
AAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGCCTCCCGCTTCTGATCCATGGGTGATGGAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCCGGAGCGAAATGTGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAAT
CGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGATCAGGCTTTGCAACTGATATGGAAATCATTGCCCAAAGACCCTCGTGGAACTTTGCCCAGAGAGTACCTTCGTGTTGCTTTGGACATGATAGCCCCAGCTGCCGGCTTACCACCGTTG
GGAGGAGTTGAACAGATGGATCGAGTTGTTTCTGAAATTTTTAAAATGGTGAAAGCAGACGAGGGTGGAGTCTTGAAGCAAGACCAATTCAATAAGCTGTTACTGGAGATTCTGGGCAGCCTTATGCTTCAACTCGAGGGAAATCCAATCTCTGTTTCATCCAACGCTGTCGTTGAGTCTGATCAGCCTGACTTCCTTCC
TCAGCTGTGATTCTGTATACACAGCTTTCAATGGCTGTAAATGCTGCACATACTGGCCCATGCCCGGTCCTGAAAGAAACTTAGTGGACCATTAATCCGTACTAGTATTATTATAGTGTTGGTATTTGAGTAACTTCTTGCCATATTCCTTTCAAGTCTCCTGACCGGGGGATCCCTCTTGGACCAGGAAAGAAACTTAG
TGGAGCATTAATTCCTTGTATTATTACTTCAGTGTTGGCATTTGAGTAACTTCTTGCCATATTCATGAGAATCCGTGTTGGACTTCTAGATAACCACTACTCTGTTTGGTATCTGCATGTTCAATTCAACGAAAAAAAATTCTACATATCTCTGTCAAACATAAATGCAGTTACATTGACGGCATTAGTACTTACAATTT
ATAGTTCTATAATAATTGAATGCTGTCCTCTTAAATAAATCATTGCTTCGAGTATTGTTGC


>TRINITY_DN114339_c0_g1_i2 from sample A1 / Example unspliced isoform:
GCTCTCAACTATCCTATTCTTACAGGCAACCTTACTGTTACCACCCACCTGTTAAGCTCTCTCGTTTGTTTATTAATGGTTATCCACCTCTCAACGTGACGAATGCGCACTCCTGAAGCTTCAAGATTCTATATCAAGCAGATTGATCACTCATTTATTTATTAGTGGTTATCCACCTCTGAACGTGACGAATGTGCATT
CCCGAAGCTTCAAGACTCTATATCTTGCTCCCAATTTCTTTCCTCACAAAAGCAGATTGATCACGTTTGAGGCCCCTGCAAGCACGGGAATCGGGAGAGACAAGTCACAAGGAGTAGAAGAGAAGCAAGATATATAGGAGAAAGAGAAATGGAGAGTAATATGATACTTGATGGGTTGAAGCTGGAGCAACTTGTTGAAG
ACAATGAGGCTTTTGCCAAGTACGTGGACAAGAGGTTCGAAGCGCTGGATAAAGATCACAATGGCAGACTTTCTCCGCAAGAGCTTCGGCCGGCCGTGGCCGCCATTGGCATTGCCCTGGGACTGCCTGCTCAAGGCTCCTCCCCCGACGCCGACATCATCTATGACCAGGTCTTGAACGAATATTTCATAAGTGGTAAA
ACTGATGGGATCAGCAAAGAGGATTTTCGCACAGTTCTGTCTGACATTCTTTTGGGTGTGGCCGACGGTTTGAAAAGAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAGAACTATGCCCGCAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAGAAATTGACAAATCTGAACTGTCTCTGGA
AAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGCCTCCCGCTTCTGATCCATGGGTGATGGAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCCGGAGCGAAATGTGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAAT
CGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGATCAGGCTTTGCAACTGATATGGAAATCATTGCCCAAAGACCCTCGTGGAACTTTGCCCAGAGAGTACCTTCGTGTTGCTTTGGACATGATAGCCCCAGCTGCCGGCTTACCACCGTTG
GGAGGAGTTGAACAGgtcaatataatctataatgttagttaatttgtttgtgtttttatttttctatcaatgaattttgatgcttaatcttgaatataatgtggggaatgcagATGGATCGAGTTGTTTCTGAAATTTTTAAAATGGTGAAAGCAGACGAGGGTGGAGTCTTGAAGCAAGACCAATTCAATAAGCTGTTA
CTGGAGATTCTGGGCAGCCTTATGCTTCAACTCGAGGGAAATCCAATCTCTGTTTCATCCAACGCTGTCGTTGAGTCTGATCAGCCTGACTTCCTTCCTCAGCTGTGATTCTGTATACACAGCTTTCAATGGCTGTAAATGCTGCACATACTGGCCCATGCCCGGTCCTGAAAGAAACTTAGTGGACCATTAATCCGTAC
TAGTATTATTATAGTGTTGGTATTTGAGTAACTTCTTGCCATATTCCTTTCAAGTCTCCTGACCGGGGGATCCCTCTTGGACCAGGAAAGAAACTTAGTGGAGCATTAATTCCTTGTATTATTACTTCAGTGTTGGCATTTGAGTAACTTCTTGCCATATTCATGAGAATCCGTGTTGGACTTCTAGATAACCACTACTC
TGTTTGGTATCTGCATGTTCAATTCAACGAAAAAAAATTCTACATATCTCTGTCAAACATAAATGCAGTTACATTGACGGCATTAGTACTTACAATTTATAGTTCTATAATAATTGAATGCTGTCCTCTTAAATAAATCATTGCTTCGAGTATTGTTGC




Intron 4 GTCAGTCCAC ... CCGATTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A116.673006
A213.464507
A317.9155012
A414.294828
A5302109
A617.55155033
A722.63106031
A814.4477013
A917.5875016
A1019.8393323



>TRINITY_DN102058_c0_g1_i4 from sample A3 / Example spliced isoform
CTCTCGTTTGTTTATTAATGGTTATCCACCTCTCAACGTGACGAATGCGCACTCCCGAAGCTTCAAGATTCTATATCAAGCAGATTGATCACTCATTTATTTATTAGTGGTTATCCACCTCTGAACGTGACGAATGTGCATTCCCGAAGCTTCAAGACTCTATATCTTGCTCCCAATTTCTTTCCTCACAAAAGCAGATT
GATCACGTTTGAGGCCCCTGCAAGCACGGGAATCGGGAGAGACAAGTCACAAGGAGTAGAAGAGAAGCAAGATATATAGGAGAAAGAGAAATGGAGAGTAATATGATACTTGATGGGTTGAAGCTGGAGCAACTTGTTGAAGACAATGAGGCTTTTGCCAAGTACGTGGACAAGAGGTTCGAAGCGCTGGATAAAGATCA
CAATGGCAGACTTTCTCCGCAAGAGCTTCGGCCGGCCGTGGCCGCCATTGGCATTGCCCTGGGACTGCCTGCTCAAGGCTCCTCCCCCGACGCCGACATCATCTATGACCAGGTCTTGAACGAATATTTCATAAGTGGTAAAACTGATGGGATCAGCAAAGAGGATTTTCGCACAGTTCTGTCTGACATTCTTTTGGGTG
TGGCCGACGGTTTGAAAAGAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAGAACTATGCCCGCAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAGAAATTGACAAATCTGAACTGTCTCTGGAAAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGCCTCCCGCTTCTGATCCATGG


GTGATG
GAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCCGGAGCGAAATGTGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAATCGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTT
TGTCAAGAATAAAGATGAGTTGGATCAGGCTTTGCAACTGATATGGAAATCATTGCCCAAAGACCCTCGTGGAACTTTGCCCAGAGAGTACCTTCGTGTTGCTTTGGACATGATAGCCCCAGCTGCTGGCTTACCACCGTTGGGAGGAGTTGAACAGATGGATCGAGTTGTTTCTGAAATTTTTAAAATGGTGAAAGCAG
ACGAGGGTGGAGTCTTGAAGCAAGACCAATTCAATAAGCTGTTACTGGAGATTCTGGGCAGCCTTATGCTTCAACTCGAGGGAAATCCAATCTCTGTTTCATCCAACGCTGTCGTTGAGTCTGATCAGCCTGACTTCCTTCCTCAGCTGTGATTCTGTATACACAGCTTTCAATGGCTGTAAATGCTGCACATACTGGCC
CATGCCCGGTCCTGAAAGAAACTTAGTGGACCATTAATCCGTACTAGTATTATTATAGTGTTGGTATTTGAGTAACTTCTTGCCATATTCCTTTCAAGTCTCCTGACCGGGGGATCCCTCTTGGACCAGGAAAGAAACTTAGTGGAGCATTAATTCCTTGTATTATTACTTCAGTGTTGGCATTTGAGTAACTTCTTGCC
ATATTCATGAGAATCCGTGTTGGACTTCTAGATAACCACTACTCTGTTTGGTATCTGCATGTTCAATTCAACGAAAAAAAATTCTACATATCTCTGTCAAACATAAATGCAGTTACATTGACGGCATTAGTACTTACAATTTATAGTTCTATAATAATTGAATGCTGTCCTCTTAAATAAATCATTGCTTCGAGTATTGT
TGCCATAGATACAAATAATAGATACCTCTAGAGTGACAATTTTGCATGGTATAGTATCATTCAGAGGAGCACGAAGCTGTA


>TRINITY_DN102058_c0_g1_i2 from sample A3 / Example unspliced isoform:
CCTCCCGCTTCTGATCCATGGgtcagtccacaattgcttcatttcttggctctaacttgattttgatcttgattttgaatcacggaaccctctcctgatccgattgcagGTGATGGAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCCGGAGCGAAATGTGAGTCAGGAGGAATTTG
TGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAATCGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGATCAGGTGAGTAATTTCAGCATTTCAATTTCATTTATGCAAGAACCTTTAATTCCAGCATCAGTGTCC
TTATATTCGACTGAAATTACTTGAGCTACAGTAGGTAAATCTACTGTGATATTGAAAACCTTTATTTTTCTGAGTGTTCAGG




Intron 5 GTGAGTAATT ... GAGTGTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A19.278123.89.5
A24.397521.84
A36.415819.54.5
A47.5956185
A58.39278.82.8
A64.9537710223.3
A74.3732683.317.3
A85.372737518.3
A95.38192.347.313.3
A105.1122266.814.3



>TRINITY_DN114339_c0_g1_i2 from sample A1 / Example spliced isoform
GCTCTCAACTATCCTATTCTTACAGGCAACCTTACTGTTACCACCCACCTGTTAAGCTCTCTCGTTTGTTTATTAATGGTTATCCACCTCTCAACGTGACGAATGCGCACTCCTGAAGCTTCAAGATTCTATATCAAGCAGATTGATCACTCATTTATTTATTAGTGGTTATCCACCTCTGAACGTGACGAATGTGCATT
CCCGAAGCTTCAAGACTCTATATCTTGCTCCCAATTTCTTTCCTCACAAAAGCAGATTGATCACGTTTGAGGCCCCTGCAAGCACGGGAATCGGGAGAGACAAGTCACAAGGAGTAGAAGAGAAGCAAGATATATAGGAGAAAGAGAAATGGAGAGTAATATGATACTTGATGGGTTGAAGCTGGAGCAACTTGTTGAAG
ACAATGAGGCTTTTGCCAAGTACGTGGACAAGAGGTTCGAAGCGCTGGATAAAGATCACAATGGCAGACTTTCTCCGCAAGAGCTTCGGCCGGCCGTGGCCGCCATTGGCATTGCCCTGGGACTGCCTGCTCAAGGCTCCTCCCCCGACGCCGACATCATCTATGACCAGGTCTTGAACGAATATTTCATAAGTGGTAAA
ACTGATGGGATCAGCAAAGAGGATTTTCGCACAGTTCTGTCTGACATTCTTTTGGGTGTGGCCGACGGTTTGAAAAGAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAGAACTATGCCCGCAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAGAAATTGACAAATCTGAACTGTCTCTGGA
AAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGCCTCCCGCTTCTGATCCATGGGTGATGGAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCCGGAGCGAAATGTGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAAT
CGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGATCAGGCTTTGCAACTGATATGGAAATCATTGCCCAAAGACCCTCGTGGAACTTTGCCCAGAGAGTACCTTCGTGTTGCTTTGGACATGATAGCCCCAGCTGCCGGCTTACCACCGTTG
GGAGGAGTTGAACAGGTCAATATAATCTATAATGTTAGTTAATTTGTTTGTGTTTTTATTTTTCTATCAATGAATTTTGATGCTTAATCTTGAATATAATGTGGGGAATGCAGATGGATCGAGTTGTTTCTGAAATTTTTAAAATGGTGAAAGCAGACGAGGGTGGAGTCTTGAAGCAAGACCAATTCAATAAGCTGTTA
CTGGAGATTCTGGGCAGCCTTATGCTTCAACTCGAGGGAAATCCAATCTCTGTTTCATCCAACGCTGTCGTTGAGTCTGATCAGCCTGACTTCCTTCCTCAGCTGTGATTCTGTATACACAGCTTTCAATGGCTGTAAATGCTGCACATACTGGCCCATGCCCGGTCCTGAAAGAAACTTAGTGGACCATTAATCCGTAC
TAGTATTATTATAGTGTTGGTATTTGAGTAACTTCTTGCCATATTCCTTTCAAGTCTCCTGACCGGGGGATCCCTCTTGGACCAGGAAAGAAACTTAGTGGAGCATTAATTCCTTGTATTATTACTTCAGTGTTGGCATTTGAGTAACTTCTTGCCATATTCATGAGAATCCGTGTTGGACTTCTAGATAACCACTACTC
TGTTTGGTATCTGCATGTTCAATTCAACGAAAAAAAATTCTACATATCTCTGTCAAACATAAATGCAGTTACATTGACGGCATTAGTACTTACAATTTATAGTTCTATAATAATTGAATGCTGTCCTCTTAAATAAATCATTGCTTCGAGTATTGTTGC


>TRINITY_DN114339_c0_g1_i1 from sample A1 / Example unspliced isoform:
GCTCTCAACTATCCTATTCTTACAGGCAACCTTACTGTTACCACCCACCTGTTAAGCTCTCTCGTTTGTTTATTAATGGTTATCCACCTCTCAACGTGACGAATGCGCACTCCTGAAGCTTCAAGATTCTATATCAAGCAGATTGATCACTCATTTATTTATTAGTGGTTATCCACCTCTGAACGTGACGAATGTGCATT
CCCGAAGCTTCAAGACTCTATATCTTGCTCCCAATTTCTTTCCTCACAAAAGCAGATTGATCACGTTTGAGGCCCCTGCAAGCACGGGAATCGGGAGAGACAAGTCACAAGGAGTAGAAGAGAAGCAAGATATATAGGAGAAAGAGAAATGGAGAGTAATATGATACTTGATGGGTTGAAGCTGGAGCAACTTGTTGAAG
ACAATGAGGCTTTTGCCAAGTACGTGGACAAGAGGTTCGAAGCGCTGGATAAAGATCACAATGGCAGACTTTCTCCGCAAGAGCTTCGGCCGGCCGTGGCCGCCATTGGCATTGCCCTGGGACTGCCTGCTCAAGGCTCCTCCCCCGACGCCGACATCATCTATGACCAGGTCTTGAACGAATATTTCATAAGTGGTAAA
ACTGATGGGATCAGCAAAGAGGATTTTCGCACAGTTCTGTCTGACATTCTTTTGGGTGTGGCCGACGGTTTGAAAAGAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAGAACTATGCCCGCAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAGAAATTGACAAATCTGAACTGTCTCTGGA
AAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGCCTCCCGCTTCTGATCCATGGGTGATGGAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCCGGAGCGAAATGTGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAAT
CGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGATCAGgtgagtaatttcagcatttcaatttcatttatgcaagaacctttaattccagcatcagtgtccttatattcgactgaaattacttgagctacagtaggtaaatctactgtgata
ttgaaaacctttatttttctgagtgttcag
GCTTTGCAACTGATATGGA




Intron 6 GTATGTATTC ... TATTGTCCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A117.2955149
A236.69443516
A327.71602818
A429.77462514
A528271011
A621.141383341
A720.941685138
A822.62651721
A926.18863031
A1022.761124026



>TRINITY_DN114339_c0_g1_i2 from sample A1 / Example spliced isoform
GCTCTCAACTATCCTATTCTTACAGGCAACCTTACTGTTACCACCCACCTGTTAAGCTCTCTCGTTTGTTTATTAATGGTTATCCACCTCTCAACGTGACGAATGCGCACTCCTGAAGCTTCAAGATTCTATATCAAGCAGATTGATCACTCATTTATTTATTAGTGGTTATCCACCTCTGAACGTGACGAATGTGCATT
CCCGAAGCTTCAAGACTCTATATCTTGCTCCCAATTTCTTTCCTCACAAAAGCAGATTGATCACGTTTGAGGCCCCTGCAAGCACGGGAATCGGGAGAGACAAGTCACAAGGAGTAGAAGAGAAGCAAGATATATAGGAGAAAGAGAAATGGAGAGTAATATGATACTTGATGGGTTGAAGCTGGAGCAACTTGTTGAAG
ACAATGAGGCTTTTGCCAAGTACGTGGACAAGAGGTTCGAAGCGCTGGATAAAGATCACAATGGCAGACTTTCTCCGCAAGAGCTTCGGCCGGCCGTGGCCGCCATTGGCATTGCCCTGGGACTGCCTGCTCAAGGCTCCTCCCCCGACGCCGACATCATCTATGACCAGGTCTTGAACGAATATTTCATAAGTGGTAAA
ACTGATGGGATCAGCAAAGAGGATTTTCGCACAGTTCTGTCTGACATTCTTTTGGGTGTGGCCGACGGTTTGAAAAGAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAGAACTATGCCCGCAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAGAAATTGACAAATCTGAACTGTCTCTGGA
AAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGCCTCCCGCTTCTGATCCATGGGTGATGGAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCCGGAGCGAAATGTGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAAT
CGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGATCAGGCTTTGCAACTGATATGGAAATCATTGCCCAAAGACCCTCGTGGAACTTTGCCCAGAGAGTACCTTCGTGTTGCTTTGGACATGATAGCCCCAGCTGCCGGCTTACCACCGTTG
GGAGGAGTTGAACAGGTCAATATAATCTATAATGTTAGTTAATTTGTTTGTGTTTTTATTTTTCTATCAATGAATTTTGATGCTTAATCTTGAATATAATGTGGGGAATGCAGATGGATCGAGTTGTTTCTGAAATTTTTAAAATGGTGAAAGCAGACGAGGGTGGAGTCTTGAAGCAAGACCAATTCAATAAGCTGTTA
CTGGAGATTCTGGGCAGCCTTATGCTTCAACTCGAGGGAAATCCAATCTCTGTTTCATCCAACGCTGTCGTTGAGTCTGATCAGCCTGACTTCCTTCCTCAGCTGTGATTCTGTATACACAGCTTTCAATGGCTGTAAATGCTGCACATACTGGCCCATGCCCGGTCCTGAAAGAAACTTAGTGGACCATTAATCCGTAC
TAGTATTATTATAGTGTTGGTATTTGAGTAACTTCTTGCCATATTCCTTTCAAGTCTCCTGACCGGGGGATCCCTCTTGGACCAGGAAAGAAACTTAGTGGAGCATTAATTCCTTGTATTATTACTTCAGTGTTGGCATTTGAGTAACTTCTTGCCATATTCATGAGAATCCGTGTTGGACTTCTAGATAACCACTACTC
TGTTTGGTATCTGCATGTTCAATTCAACGAAAAAAAATTCTACATATCTCTGTCAAACATAAATGCAGTTACATTGACGGCATTAGTACTTACAATTTATAGTTCTATAATAATTGAATGCTGTCCTCTTAAATAAATCATTGCTTCGAGTATTGTTGC


>TRINITY_DN114339_c0_g1_i4 from sample A1 / Example unspliced isoform:
GCTCTCAACTATCCTATTCTTACAGGCAACCTTACTGTTACCACCCACCTGTTAAGCTCTCTCGTTTGTTTATTAATGGTTATCCACCTCTCAACGTGACGAATGCGCACTCCTGAAGCTTCAAGATTCTATATCAAGCAGATTGATCACTCATTTATTTATTAGTGGTTATCCACCTCTGAACGTGACGAATGTGCATT
CCCGAAGCTTCAAGACTCTATATCTTGCTCCCAATTTCTTTCCTCACAAAAGCAGATTGATCACGTTTGAGGCCCCTGCAAGCACGGGAATCGGGAGAGACAAGTCACAAGGAGTAGAAGAGAAGCAAGATATATAGGAGAAAGAGAAATGGAGAGTAATATGATACTTGATGGGTTGAAGCTGGAGCAACTTGTTGAAG
ACAATGAGGCTTTTGCCAAGTACGTGGACAAGAGGTTCGAAGCGCTGGATAAAGATCACAATGGCAGACTTTCTCCGCAAGAGCTTCGGCCGGCCGTGGCCGCCATTGGCATTGCCCTGGGACTGCCTGCTCAAGGCTCCTCCCCCGACGCCGACATCATCTATGACCAGgtatgtattccttcgtcaaatcttcatccg
ccattaatcataaaaacagtaaacagcgtcctaagagtattattgtccag
GTCTTGAACGAATATTTCATAAGTGGTAAAACTGATGGGATCAGCAAAGAGGATTTTCGCACAGTTCTGTCTGACATTCTTTTGGGTGTGGCCGACGGTTTGAAAAGAGACCCCGTTTCCCTTGTTACCATTGATGGCCGCCTCCTCGAG
AACTATGCCCGCAGCCGGGCTTTTGAGTTGGATGCGCTCACCATATTTACAGAAATTGACAAATCTGAACTGTCTCTGGAAAAAGCTCTGGGCAAGCTTACGGTGGAGCAAGGCATGCCTCCCGCTTCTGATCCATGGGTGATGGAGAAGATTGTAAAACCGGCAGCAGAGTCCTGCGGGTTCCAGCAGCTGATAAATCC
GGAGCGAAATGTGAGTCAGGAGGAATTTGTGGAGGTTTTCCGCAATGTGGTGTTGGAAGTGGCATCGCGATTGGAGAAATCGCCGGTGACAGTGGCACACAGCGAGAAGATTTACGATGGTAAATCGATCCAAAACTTTGTCAAGAATAAAGATGAGTTGGATCAGGCTTTGCAACTGATATGGAAATCATTGCCCAAAG
ACCCTCGTGGAACTTTGCCCAGAGAGTACCTTCGTGTTGCTTTGGACATGATAGCCCCAGCTGCCGGCTTACCACCGTTGGGAGGAGTTGAACAGATGGATCGAGTTGTTTCTGAAATTTTTAAAATGGTGAAAGCAGACGAGGGTGGAGTCTTGAAGCAAGACCAATTCAATAAGCTGTTACTGGAGATTCTGGGCAGC
CTTATGCTTCAACTCGAGGGAAATCCAATCTCTGTTTCATCCAACGCTGTCGTTGAGTCTGATCAGCCTGACTTCCTTCCTCAGCTGTGATTCTGTATACACAGCTTTCAATGGCTGTAAATGCTGCACATACTGGCCCATGCCCGGTCCTGAAAGAAACTTAGTGGACCATTAATCCGTACTAGTATTATTATAGTGTT
GGTATTTGAGTAACTTCTTGCCATATTCCTTTCAAGTCTCCTGACCGGGGGATCCCTCTTGGACCAGGAAAGAAACTTAGTGGAGCATTAATTCCTTGTATTATTACTTCAGTGTTGGCATTTGAGTAACTTCTTGCCATATTCATGAGAATCCGTGTTGGACTTCTAGATAACCACTACTCTGTTTGGTATCTGCATGT
TCAATTCAACGAAAAAAAATTCTACATATCTCTGTCAAACATAAATGCAGTTACATTGACGGCATTAGTACTTACAATTTATAGTTCTATAATAATTGAATGCTGTCCTCTTAAATAAATCATTGCTTCGAGTATTGTTGC