sp|Q9SRX2|RL191_ARATH ----> Large ribosomal subunit protein eL19x

Intron 1 GTATGTGCCG ... ATTTCCACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	26.29	171	61	1
A2	29.26	162	67	0
A3	30.96	136	61	2
A4	25.53	105	36	0
A5	29.17	102	42	0
A6	27.64	542	207	0
A7	28.93	656	267	0
A8	26.97	593	219	0
A9	25.72	667	231	0
A10	27.21	511	191	0

>TRINITY_DN133626_c6_g1_i8 from sample A1 / Example spliced isoform

CGAGTTTTGGTGCCTGGGACTCGGCGGTGGGTGAACATCAGTGGGGATACAAGCGTCAGAGCATGGGACTGCTGTGAAATGACAGTCTGACTAAAGAAAATAATGACTCTAGTCCTCTTGCAAGTCCTCCTTCCTGTCAATCAGTACCTCTTGCGACTGCGATTGAGGTTTTCTTTGCCTACATGCATCTCAAGGTTATA
CTGTTTTCTATTCATTTGTAAAAAAAAATGCTATCTCCTGTATAAATGAAACCCTCAAAACCCTAATTGAGGTTATGAAATTGGGGTGTTGTATATTATCAAACCCTTAAACCCCCAAAATTGACAGAGGAGAGGAGCTTGTGAGGGAGACGAAGGTTCAGGAACAATGGTTTCGCTGAAGTTGCAGAAGCGGCGAGCGG
CGAGCGTTCTGAAGTGTGGGAAGGGAAAAGTCTGGCTCGACCCCACCCTTAAACCCCCAAAATTGACAGAGGAGAGGAGCTTGTGAGGGAGACGAAGGTTCAGGAACAATGGTTTCGCTGAAGTTGCAGAAGCGGCTCGCGGCTAGCGTTCTGAAGTGCGGGAAGGGAAAAGTCTGGCTCGACCCCAATGAAGTCAGCGA
GATTTCCATGGCCAATTCCAGGCAAAACATTCGGAAGTTGGTCAAAGATGGGTTTGTTATCAGGAAGCCAATGAAAATTCACTCTCGTGCTCGTGCTCGACGTGCTTTGGAAGCAAAAAGAAAGGGTCGTCATTCTGGATATGGTAAGCGCAAAGGTACTAGGGAGGCAAGGTTGCCTACAAAGATTCTGTGGATGAGGC
GGATGAGGGTTTTGCGTCGATTGTTACGCAAGTATAGAGAATCTAAGAAAATTGACAAACACATGTACCATGATATGTACATGAAAGTCAAGGGTAATGTGTTCAAAAATAAGCGGGTCTTGATGGAAAGTATTCACAAGTCCAAGGCTGAGAAGGCTAGAGAGAAGACCTTATCTGACCAATTTGAAGCAAAACGTGCA
AAGAACAAGGCAAGTCGTGAAAGGAAGATTGCTAGGAGGGAAGAAAGGTTGGCCCAGGGACCTACCGAGGCACCGCCAGGACCTGCACAACAATCTGCTGCAGGGGGAACAAAGAAGAAGAAGTGAGATGTCAGCTTTAGAACTTAGTGTAGCTAGAGTATATGTTATCTTGTGGGGCTTTCTAAGAGTTACTTTTAGAA
GCGAAGATGAGTAGAGAAATCAAGACTGTTGAATTTTTATCTGTAGAGCAGGGTGAGCTTATAGCAATTTTGATTTTAATGGATCTTTGCAGGGCGAGCTTATAACAATTTTGATTTTAATGGATCTTTATGGGTTATTTACTTGGATGGATTAATGCATATGATGATACCTATTCACTTTGCCATGACAAGTGCTAATT
TATGGTTAAATTGCTCGATTTGTACCCTGCAATGTTTTTTTGGATTAAAGCAGAATTCTTGTGCTTTTCATCCTCAAATCTTTGTAGAACAGATTGTAGTGGTCTCTGAAATTTGAGTTTTCCATGCGATTATAGACTGTAGCAAAAATGTTGAACTTATAATTTTGTTATAATGCTCCAGTAGAAAAGGTAGAAGCCAT
AAGAATTTCTTGATTTTAAAGGATTGGAGGTGGCTTGAAGTTGCACTGGTCATTTGTAATGTACAACTTTCCTTAGATTGGAACTTGGAAATCATTCTATGTAAATTGAAGTTATACTGGTTGTGCAATATAAGGCAACAGAATGTGTTAATGGTTCTGATTATTACTAAAATTCAGTAAATAGACTTGTATATGC

>TRINITY_DN133626_c6_g1_i9 from sample A1 / Example unspliced isoform:

GTTAAGTAATGGAGGTGATATTTCCCATCAAGATTCAAATCCTTCAATAGACATGTTTCGCTTGGCGTGGGCTGTGTTGCCTTTGCAATCCGTCTTCAGTTTAGGGTTGGACTCATGCGCAAGTCCGATTTTTATTTTTATTTGTTAACAGTGTTGTGTGTATGTGGCGGGTTTATAGGGTACATGTCGCAGGGATAATT
TTTTCTCGAATGTTGAACAGAACTTATACTGAAGTATATTTTTCTTATTGCAGGGCAAAACATTCGGAAGTTGGTCAAAGATGGGTTTGTTATCAGGAAGCCAATGAAAATTCACTCTCGTGCTCGTGCTCGACGTGCTTTGGAAGCAAAAAGAAAGGGTCGTCATTCTGGATATGgtatgtgccggttttattggtttt
catatgtattgtgccattgtaaatccttttggtgtagcaagtcgctgttagtatcatgtaatttttgtagctattcattaattcattaaatcgtccataagattgctgtatcgtcctattattaaaatccatgttttcaaatacaattgctgtgtgcaattctgtttcttatgtattacagattaatattttttaaaata
tgctacagctgtgcatttatattctattgaatacttgctaaatgattttcgatgttcgatttccacagGTAAGCGCAAAGGTACTAGGGA

Intron 2 GTTTTCTTTG ... GCATCTCAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	38.53	6	3.7	2.7
A2	51.15	26.3	27.7	17
A3	46.29	4.7	4	0.7
A4	46.29	9.3	8	2.3
A5	69.84	2	4.7	3.7
A6	57.65	36	49	22
A7	49.78	68.7	68	19.3
A8	51.59	26	27.7	10.3
A9	52.8	50.7	56.7	18.7
A10	51.6	35.3	37.7	11.3

>TRINITY_DN45379_c2_g3_i3 from sample A7 / Example spliced isoform

GATCGCTAACGCCAGCCTCGAGTTTTGGTGCCTGGGACTCGGCGGTGGGTGAACATCAGTGGGGATACAAGCGTCAGAGCATGGGACTGCTGTGAAATGACAGTCTGACTAAAGAAAATAATGACTCTAGTCCTCTTGCAAGTCCTCCTTCCTGTCAATCAGTACCTCTTGCGACTGCGATTGAGATGGATGCCATCGAT
GGACTCAGCATTTGGACTTACTTTGAATTACTTTGCAATACAGAAGAACACTCAATTAGGAAGGGAAATTAGGGCTTTTACTCCCATGAACTCCGTGTCTAACTCTCTCTAACATTTCTTGGGTTTCTTTAATACATATCACGGAGTGCACCTCAAGCATATCATTGGAGTCATCAAAACCCTTGGAGATGGCATTGGCT
ATTTGTGAAGGATGCAAATGACAATGAGATGGAGAATGATCAGAGAAGAGCTGTGGATAAGCTAGATATTGAATTAAGTGAGAAACAAAGTAGTATGGCAGATCTTGAATGGTATAAAGAGAGTTGTGAGAAAGACGGTGGGATCGGATATTATGATACCTTCAAAAATCAAAATGACAAGGAAGATATCCATGCTGATA
TGAGAAGGCTAAAGCTTGCAGAGTTTTGGGATAAGATTATAGAAATGTGGGAGGGTCATGAGTTGCCCAGTGATTTCGAATTCCGAAAGAAGTGGATAAATGCTGGCCATGCATATAGAATAGTTGTAGAACCTCTGGATATTGCACATTATTATCGCACTAATGGCAACGGCAACTATCTTTTAGATGGAAGACCCAAT
CGCCATAAAGTTCTTCAGAAA

>TRINITY_DN45379_c2_g3_i5 from sample A7 / Example unspliced isoform:

GATCGCTAACGCCAGCCTCGAGTTTTGGTGCCTGGGACTCGGCGGTGGGTGAACATCAGTGGGGATACAAGCGTCAGAGCATGGGACTGCTGTGAAATGACAGTCTGACTAAAGAAAATAATGACTCTAGTCCTCTTGCAAGTCCTCCTTCCTGTCAATCAGTACCTCTTGCGACTGCGATTGAGgttttctttgcctac
atgcatctcaagATGGATGCCATCGATGGACTCAGCATTTGGACTTACTTTGAATTACTTTGCAATACAGAAGAACACTCAATTAGGAAGGGAAATTAGGGCTTTTACTCCCATGAACTCCGTGTCTAACTCTCTCTAACATTTCTTGGGTTTCTTTAATACATATCACGGAGTGCACCTCAAGCATATCATTGGAGTCA
TCAAAACCCTTGGAGATGGCATTGGCTATTTGTGAAGGATGCAAATGACAATGAGATGGAGAATGATCAGAGAAGAGCTGTGGATAAGCTAGATATTGAATTAAGTGAGAAACAAAGTAGTATGGCAGATCTTGAATGGTATAAAGAGAGTTGTGAGAAAGACGGTGGGATCGGATATTATGATACCTTCAAAAATCAAA
ATGACAAGGAAGATATCCATGCTGATATGAGAAGGCTAAAGCTTGCAGAGTTTTGGGATAAGATTATAGAAATGTGGGAGGGTCATGAGTTGCCCAGTGATTTCGAATTCCGAAAGAAGTGGATAAATGCTGGCCATGCATATAGAATAGTTGTAGAACCTCTGGATATTGCACATTATTATCGCACTAATGGCAACGGC
AACTATCTTTTAGATGGAAGACCCAATCGCCATAAAGTTCTTCAGAAA