sp|Q2R2B4|RFC1_ORYSJ ----> Replication factor C subunit 1
Intron 1 GTACGCACTA ... TCATATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.09 | 56 | 4.7 | 10 |
| A2 | 23.02 | 42 | 2.7 | 14 |
| A3 | 17.02 | 58 | 1 | 13 |
| A4 | 16.99 | 37 | 5.7 | 8 |
| A5 | 17.06 | 25 | 2 | 5.3 |
| A6 | 20.11 | 44 | 0.7 | 12.7 |
| A7 | 14.93 | 97 | 0.7 | 18.7 |
| A8 | 21.07 | 39 | 3 | 11.7 |
| A9 | 13.33 | 68 | 0.7 | 11.3 |
| A10 | 12.63 | 77 | 2 | 12 |
>TRINITY_DN106647_c0_g1_i1 from sample A4 / Example spliced isoformGGTACCAACACTGGAAAAATACAGAGAAGGAAAGCAGCTCCCGGCCCTGCTCAGCAGAAATGGAGATGGAGATGCCAGATGTAGATGAGCTTGAATGGTTGGCTCAGCAACAACAGCATTACAATTCAGATGACAATGAAGACGACCATCTTGATCCTGTTCCTCTTTCTCCGTCTCCAAGTCCATCAAAATTCAAATCC
AGTTCTTCAACTCAGCAGCAGCAGCCGGAGGACAAGGGGTGTCGGAAGAGGCTCTACCCGGACGTTGATGGTGAGGATGACGATCAAGTCGCCGAGAAGCGGAACAGGACCGATGAAATGCTATTCGTTGAGGATGAATGGCTGCAGGATCCACCGGACCATTTTCCGGTCCCAAACCAAATTGAGAAAGAGAAGGAGAG
GGAGAATGAGTGGATTCCTCGCAGAATGGCGGGTGATATTGAAGGCGATTTTATTTCTATCACAGGGCCCTCTGGCGACCGGGTTTATGCCAAACTCAATGGAATGGTCCCCCTTTCCACCACCTCCACCACCACTAGGATTGTAAATGGCAATGGACAAGGACTTCTTTCTGAACCAATTCATGCTTTACTTGAAAAAG
TTGAAGAAGAAATGTTTCATCAGGCTTGCCATGCTACGACAGAAGGTACGAGTGATGAAAACTATGTCTGCAGCCAAACAACAAGTGAGCAGCTGTGGGTGGAAAAATATGCTCCAAAGTCATTTACTGAACTCTTGAGTGATGAGCAGACAAATAGAGAGGTCTTACGCTGGCTGAAGCAATGGGATCCTTGTGTATTT
GGATCTAAAAACACAAGGACCTCTAGTGAGGTCCTGTCTGCATTAAAAATACATTCTTCTATTTCGCAAAGCCATGGATTCGTCGGCAATAAGAACTTTTCATTTAAGGGAAACAGGGGAGTTCCACCAAGCGAGATAAATGATGGGAAAGATAAATGGAATAACTCAAATCATCCAAATGATTATTCTACAAAAACTTC
AGATCAATTAAAGAAGGAGACCTGTGATGACCGCCCTGATGAAAAGATACTTTTACTCTGTGGTCCTCCAGGTTTGGGAAAGACTACCCTTGCTCATGTTGCTGCTAAACATTGTGGTTATCGTGTTGTGGAGATAAATGCAAGCGATGACCGGTCTGCATCTACAATAGAGGGGAAAATTCTTGATGTGGTGCAAATGA
ACTCCGTCATGGCTGATTCTAAGCCAAAGTGTTTAGTGATTGATGAAATTGATGGAGCCCTTGGTGAGGGAAAGGGCGCTGTTGAAGTTTTGTTAAAGATGATTTCCTCGGAAAAGAAGCCAACTTTGGACAAGGAAAATGATGAAAGTATTACACAATCTGTAAAGGCTACCAAGAAGAAAGGCCCAAAGAAAACTGGC
AGACTGTCAAGACCGGTGATTTGCATATGTAACGATATGTTTGCACCTGCTTTGCGGTCATTACGGGAAGTGGCCAGGGTGCATACCTTTGTCCAACCGAGTCCTAGCCGGGTAGTAAGCAGGCTTAAATATATCTGCAAGAAGGAAGGATTTAAGGCAAGTGCGCAAGGGCTTACTACACTGGCTGAATTTACTGAATG
TGATATACGAGCTTGTCTTAATACTCTTCAGTTTCTTAACAGAAAGAAAGAATTTCTAAATATGGTAGATATTGGTTCTCAGGTGGTTGGTCGAAAAGATATGACCAGCAGCATCTTTGATATTTGGAGGGCGGTTCTGCAAAAGCGTAAGTCCAAAGTCAAAGGACCTGCATTAGACAGTTGCAAGCAAGAAGGGCAAA
ATTTTGCACAACTTCATAACATTATTTCACACCATGGGGATTATGAATTGGGGGTTGAAGGAATTCATGAAAATTTTCTACATCTGAGGTACCATGATTCAGCGATGGAGAAGACTGTCAAGTGTCTTGATTTTCTTTGTGACTCCAATTTGCTTAGTCAGCGTACTGTGCGATCTCAGCAATTCTTTCTTTATGCATAT
CAACCTTCAATTATCATTTCTATCCAACGTCTAATAGCCCAAATAGAAAAGCCATATATTGAATGGCCAAAATCACATCAAAGGTACAGGGCAACCCTCACTGTAAAGAAAGATTTATTGAAATCATGGATGAACAGAATTTCACCAACTGTTTCAAGATATCTTTCGCTTGATTCGATTGTGGTGGACGTTGTTTCTTC
GTTGCTGTACATCTTATCACCTCCAGCTTTGAGGCCTGTGGCATCACAACTGTTATCAGAAAAGGAACATGGAGAAATAACTGAACTAGTAAACACAATGATCGATTACGCAGTCATTTACAAGAAAGGGAAAGTCCCGACTCCAAATGAGACTCAGATGCAGCATTCAACTTTAGATTCTGTTGGACTTTGCTTTGACC
CACCAATCCATGATTTTGTCAATTTCCAGGATTATACTGTGAGGCATTGTGTTCTTTCATCTGCTATGCGCCAGATCTTGAGTCACGAGGTTGAGAAGCAGAAAATATTGCGTGAAAGCATTTCTAGAACTTCTCGTGCAAATGAAGTATCTATCTTGCCAAAAGAGGCATCTATCATGGAAGAAGTCAAAGCACATGTA
AGCAAAGGCAGTCTCGCAGCTGAAAGTACATCAAACCTTCTGTCCACTCAAATCAAAATGAAAAACTCTGTACCTTCATTAATAAACCCTTTGAAGTTCAGTAGTTCAAACAATGCCGATCTCGGAAGCAATGCCACTGCACCTACAGTTGATTCCAAGTTTAAACTGGCTGCAGCCGTGAAGAAGCCTAGTGGCAGTTT
CAATTTCTTTGACAGATTCAGGAAATCTTCTCAGAATGAATCTGGAAACAATGAAAAATCTCCCGTTCTTTCGTTAACATCACGGAGAGATTTACGGCCTCTAGTTTTTAAATTTAATGAGGGATTTACCAATGCAGTAAAAAGGCCTGTGCGTGTGCGTGATCTGCTTTAAATATGGCGGTGAAGTTGATGCAGACGTC
ACTGTCAATGTTTCAAGTCAATTCAGTACAAAAGGGAAGGGAAGGGAAGGATGGAAAGTGCCTGCTTGCCTTGTGGGTAAAGTATACCGCATGAATCAATCTCTCAATTGGCAGAACGAAGTCCTTCCCCATCATCCATTGGGATGACGGGTTGACAGCCATGTTATTTGATTAGGATTGAGGGTCAACAGGATAATCAA
TAATGAAACAGCATCTGAAATTAGTGGTGGCTCACCATATAGTCATCGCATTCATCATAAATTTCCTTTTCCATTAATTCACGGAGTTGCTTAATTAACATCTGGTTAATTGGTTCCTCTTTTTCAGTGCCTTGGCAGATGCATTTTGGTATTCATGAGTTGCATCGCTTTTCATCTATCCAAATATGTGATTTTTTTAT
TAATTTGTTGTCCCTGAATCTGAAAAATATGCATGCTTTGGTGCATACAATATGGAATATACTTTAATTTTCTATTGTAGTGTTGAGTCTGAATCTAGAAATATGCATGCTTTGGTGTATACAGTATTGAATCTAATGCCTGATCCCAGGGTTTAATATCATTATTTTCCGGAATTTTGCCCAGTGGATCTAGGGGCGAT
ATCATTTTGGAAGGCACTGGCTATAGTAATATTTACCTGTCTTACTTCTTCCAATTATTCTCCGCTGGTTATTAGACTGCCATCAGAAGAGTAAACTGCACCACTGTTAACAAAGTGTTTTACAAATACACCTCTTCATATTTTTAATTTGCAGCATTAACATCAAGGTCTTTGGAAATTTCACCTCGCATTGGAC
>TRINITY_DN106647_c0_g1_i4 from sample A4 / Example unspliced isoform:GGTACCAACACTGGAAAAATACAGAGAAGGAAAGCAGCTCCCGGCCCTGCTCAGCAGAAATGGAGATGGAGATGCCAGATGTAGATGAGCTTGAATGGTTGGCTCAGCAACAACAGCATTACAATTCAGATGACAATGAAGACGACCATCTTGATCCTGTTCCTCTTTCTCCGTCTCCAAGTCCATCAAAATTCAAATCC
AGTTCTTCAACTCAGCAGCAGCAGCCGGAGGACAAGGGGTGTCGGAAGAGGCTCTACCCGGACGTTGATGGTGAGGATGACGATCAAGTCGCCGAGAAGCGGAACAGGACCGATGAAATGCTATTCGTTGAGGATGAATGGCTGCAGGATCCACCGGACCATTTTCCGGTCCCAAACCAAATTGAGAAAGAGAAGGAGAG
GGAGAATGAGTGGATTCCTCGCAGAATGGCGGGTGATATTGAAGGCGATTTTATTTCTATCACAGGGCCCTCTGGCGACCGGGTTTATGCCAAACTCAATGGAATGGTCCCCCTTTCCACCACCTCCACCACCACTAGGATTGTAAATGGCAATGGACAAGGACTTCTTTCTGAACCAATTCATGCTTTACTTGAAAAAG
TTGAAGAAGAAATGTTTCATCAGGCTTGCCATGCTACGACAGAAGGTACGAGTGATGAAAACTATGTCTGCAGCCAAACAACAAGTGAGCAGCTGTGGGTGGAAAAATATGCTCCAAAGTCATTTACTGAACTCTTGAGTGATGAGCAGACAAATAGAGAGGTCTTACGCTGGCTGAAGCAATGGGATCCTTGTGTATTT
GGATCTAAAAACACAAGGACCTCTAGTGAGGTCCTGTCTGCATTAAAAATACATTCTTCTATTTCGCAAAGCCATGGATTCGTCGGCAATAAGAACTTTTCATTTAAGGGAAACAGGGGAGTTCCACCAAGCGAGATAAATGATGGGAAAGATAAATGGAATAACTCAAATCATCCAAATGATTATTCTACAAAAACTTC
AGATCAATTAAAGAAGGAGACCTGTGATGACCGCCCTGATGAAAAGATACTTTTACTCTGTGGTCCTCCAGGTTTGGGAAAGACTACCCTTGCTCATGTTGCTGCTAAACATTGTGGTTATCGTGTTGTGGAGATAAATGCAAGCGATGACCGGTCTGCATCTACAATAGAGGGGAAAATTCTTGATGTGGTGCAAATGA
ACTCCGTCATGGCTGATTCTAAGCCAAAGTGTTTAGTGATTGATGAAATTGATGGAGCCCTTGGTGAGGGAAAGGGCGCTGTTGAAGTTTTGTTAAAGATGATTTCCTCGGAAAAGAAGCCAACTTTGGACAAGGAAAATGATGAAAGTATTACACAATCTGTAAAGGCTACCAAGAAGAAAGGCCCAAAGAAAACTGGC
AGACTGTCAAGACCGGTGATTTGCATATGTAACGATATGTTTGCACCTGCTTTGCGGTCATTACGGGAAGTGGCCAGGGTGCATACCTTTGTCCAACCGAGTCCTAGCCGGGTAGTAAGCAGGCTTAAATATATCTGCAAGAAGGAAGGATTTAAGGCAAGTGCGCAAGGGCTTACTACACTGGCTGAATTTACTGAATG
TGATATACGAGCTTGTCTTAATACTCTTCAGTTTCTTAACAGAAAGAAAGAATTTCTAAATATGGTAGATATTGGTTCTCAGGTGGTTGGTCGAAAAGATATGACCAGCAGCATCTTTGATATTTGGAGGGCGGTTCTGCAAAAGCGTAAGTCCAAAGTCAAAGGACCTGCATTAGACAGTTGCAAGCAAGAAGGGCAAA
ATTTTGCACAACTTCATAACATTATTTCACACCATGGGGATTATGAATTGGGGGTTGAAGGAATTCATGAAAATTTTCTACATCTGAGGTACCATGATTCAGCGATGGAGAAGACTgtacgcactatatgcttgatctcattttcagccagttggtgtgtttgtctgtattattaattacgtatccaattttttgactgg
ttgataatgttgtcatctcatatacagGTCAAGTGTCTTGATTTTCTTTGTGACTCCAATTTGCTTAGTCAGCGTACTGTGCGATCTCAGCAATTCTTTCTTTATGGTACTCTCTTGATCCCAGCGTTCAGTACATTTCTTTGAGTTGCAATTGGAATAAACTTGCTCAGCAGTCTTGTAACATATACTTTTGGGCTTAA
TGGCTACGCTAGGATCTATGGTTATGTTAACATTTACCTACTTCAATCTGAC
Intron 2 GTTTGGGCCT ... TTGCTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.12 | 73 | 15 | 9 |
| A2 | 14.61 | 76 | 12 | 14 |
| A3 | 10.94 | 57 | 12 | 2 |
| A4 | 20 | 44 | 14 | 8 |
| A5 | 27.27 | 8 | 2 | 4 |
| A6 | 20.98 | 81 | 29 | 14 |
| A7 | 15.38 | 88 | 14 | 18 |
| A8 | 14.86 | 106 | 25 | 12 |
| A9 | 19.3 | 69 | 18 | 15 |
| A10 | 15.09 | 45 | 11 | 5 |
>TRINITY_DN123619_c0_g2_i4 from sample A1 / Example spliced isoformGGAAAATTCTTGATGTGGTGCAAATGAACTCCGTCATGGCTGATTCTAAGCCAAAGTGTTTAGTGATTGATGAAATTGATGGAGCCCTTGGTGAGGGAAAGGGCGCTGTTGAAGTTTTGTTAAAGATGATTTCCTCGGAAAAGAAGCCAACTTTGGACAAGGAAAATGATGAAAGTATTACACAATCTGTAAAGGCTACC
AAGAAGAAAGGCCCAAAGAAAACTGGCAGACTGTCAAGACCGGTGATTTGCATATGTAACGATATGTTTGCACCTGCTTTGCGGTCATTACGGGAAGTGGCCAGGGTGCATACCTTTGTCCAACCGAGTCCTAGCCGGGTAGTAAGCAGGCTTAAATATATCTGCAAGAAGGAAGGATTTAAGGCAAGTGCGCAAGGGCT
TACTACACTGGCTGAATTTACTGAATGTGATATACGAGCTTGTCTTAATACTCTTCAGTTTCTTAACAGAAAGAAAGAATTTCTAAATATGGTAGATATTGGTTCTCAGGTGGTTGGTCGAAAAGATATGACCAGCAGCATCTTTGATATTTGGAGGGCGGTTCTGCAAAAGCGTAAGTCCAAAGTCAAAGGACCTGCAT
TAGACAGTTGCAAGCAAGAAGGGCAAAATTTTGCACAACTTCATAACATTATTTCACACCATGGGGATTATGAATTGGGGGTTGAAGGAATTCATGAAAATTTTCTACATCTGAGGTACCATGATTCAGCGATGGAGAAGACTGTCAAGTGTCTTGATTTTCTTTGTGACTCCAATTTGCTTAGTCAGCGTACTATGCGA
TCTCAGCAATTCTTTCTTTATGCATATCAACCTTCAATTATCATTTCTATCCAACGTCTAATAGCCCAAATAGAAAAGCCATATATTGAATGGCCAAAATCACATCAAAGGTACAGGGCAACCCTCACTGTAAAGAAAGATTTATTGAAATCATGGATGAACAGAATTTCACCAACTGTTTCAAGATATCTTTCGCTTGA
TTCGATTGTGGTGGACGTTGTTTCTTCGTTGCTGTACATCTTATCACCTCCAGCTTTGAGGCCTGTGGCATCACAACTGTTATCAGAAAAGGAACATGGAGAAATAACTGAACTAGTAAACACAATGATCGATTACGCAGTCATTTACAAGAAAGGGAAAGTCCCGACTCCAAATGAGACTCAGATGCAGCATTCAACTT
TAGATTCTGTTGGACTTTGCTTTGACCCACCAATCCATGATTTTGTCAATTTCCAGGATTATACTGTGAGGCATTGTGTTCTTTCATCTGCTATGCGCCAGATCTTGAGTCACGAGGTTGAGAAGCAGAAAATATTGCGTGAAAGCATTTCTAGAACTTCTCGTGCAAATGAAGTATCTATCTTGCCAAAAGAGGCATCT
ATCATGGAAGAAGTCAAAGCACATGTAAGCAAAGGCAGTCTCGCAGCTGAAAGTACATCAAACCTTCTGTCCACTCAAATCAAAATGAAAAACTCTGTACCTTCATTAATAAACCCTTTGAAGTTCAGTAGTTCAAACAATGCCGATCTCGGAAGCAATGCCACTGCACCTACAGTTGATTCCAAGTTTAAACTGGCTGC
AGCCGTGAAGAAGCCTAGTGGCAGTTTCAATTTCTTTGACAGATTCAGGAAATCTTCTCAGAATGAATCTGGAAACAATGAAAAATCTCCCGTTCTTTCGTTAACATCACGGAGAGATTTACGGCCTCTAGTTTTTAAATTTAATGAGGGATTTACCAATGCAGTAAAAAGGCCTGTGCGTGTACGTGATCTGCTTTAAA
TATGGCGGTGAAGTTGATGCAGACGTCACTGTCAATGTTTCAAGTCAATTCAGTACAAAAGGGAAGGGAAGGATGTAAAGTGCCTGCTTGCCTTGTGGGTAAAGTATACCGCATGAATCAATCTCTCAATTGGCAGAACGAAGTCCTTCCCCATCATCCATTGGGATGACGGGTTGACAGCCATGTTATTTGATTAGGAT
TGAGGGTCAACAGGATAATCAATAATGAAACAGCATCTGAAATTAGTGGTGGCTCACCATATAGTCATCGCATATCATCATAAATTTCCTTTTCCATTAATTCAAGGAGTTGCTTAATTAACATCTGGTTAATTGGTTCCTCTTTTTCAGTGCCTTGGCAGATGCATTTTGGTATTCATATGAGTTGCATCGCTTTTCAT
CTATCCAAATATGTGATTTTTTTATTAATTTGTTGTCCCTGAATCTGAAAAATATGCATGCTTTGGTGCATACAATATGGAATATACTTTAATTTTCTATTGTAGTGTTGAGTCTGAATCTAGAAATATGCATGCTTTGGTGTATACAGTATTGAATCTAATGCCTGATCCCAGGGTTTAATATCATTATTTTCCGGAAT
TTTGCCCAGTGGATCTAGGGGCGATATCATTTTGGAAGGCACTGGCTATAGTAATATTTACCCGTCTTACTTCATCCAATTATTCTC
>TRINITY_DN123619_c0_g2_i1 from sample A1 / Example unspliced isoform:GGAAAATTCTTGATGTGGTGCAAATGAACTCCGTCATGGCTGATTCTAAGCCAAAGTGTTTAGTGATTGATGAAATTGATGGAGCCCTTGGTGAGGGAAAGGGCGCTGTTGAAGTTTTGTTAAAGATGATTTCCTCGGAAAAGAAGCCAACTTTGGACAAGGAAAATGATGAAAGTATTACACAATCTGTAAAGGCTACC
AAGAAGAAAGGCCCAAAGAAAACTGGCAGACTGTCAAGACCGGTGATTTGCATATGTAACGATATGTTTGCACCTGCTTTGCGGTCATTACGGGAAGTGGCCAGGGTGCATACCTTTGTCCAACCGAGTCCTAGCCGGGTAGTAAGCAGGCTTAAATATATCTGCAAGAAGGAAGGATTTAAGGCAAGTGCGCAAGGGCT
TACTACACTGGCTGAATTTACTGAATGTGATATACGAGCTTGTCTTAATACTCTTCAGTTTCTTAACAGAAAGAAAGAATTTCTAAATATGGTAGATATTGGTTCTCAGGTGGTTGGTCGAAAAGATATGACCAGCAGCATCTTTGATATTTGGAGGGCGGTTCTGCAAAAGCGTAAGTCCAAAGTCAAAGGACCTGCAT
TAGACAGTTGCAAGCAAGAAGGGCAAAATTTTGCACAACTTCATAACATTATTTCACACCATGGGGATTATGAATTGGGGGTTGAAGGAATTCATGAAAATTTTCTACATCTGAGGTACCATGATTCAGCGATGGAGAAGACTGTCAAGTGTCTTGATTTTCTTTGTGACTCCAATTTGCTTAGTCAGCGTACTATGCGA
TCTCAGCAATTCTTTCTTTATGCATATCAACCTTCAATTATCATTTCTATCCAACGTCTAATAGCCCAAATAGAAAAGCCATATATTGAATGGCCAAAATCACATCAAAGGTACAGGGCAACCCTCACTGTAAAGAAAGATTTATTGAAATCATGGATGAACAGAATTTCACCAACTGTTTCAAGATATCTTTCGCTTGA
TTCGATTGTGGTGGACGTTGTTTCTTCGTTGCTGTACATCTTATCACCTCCAGCTTTGAGGCCTGTGGCATCACAACTGTTATCAGAAAAGGAACATGGAGAAATAACTGAACTAGTAAACACAATGATCGATTACGCAGTCATTTACAAGAAAGGGAAAGTCCCGACTCCAAATGAGACTCAGATGCAGCATTCAACTT
TAGATTCTGTTGGACTTTGCTTTGACCCACCAATCCATGATTTTGTCAATTTCCAGgtttgggcctcatctttatattgtgcttctttggttaagatcgttgtttacatcagaatattggttggaccatacttttgaaagttgctctaaatcagttttcatgcctgtttcttgcttgaaggattaagttgctctaaatca
gttttcatgcctgtttcttgcttgaagGATTATACTGTGAGGCATTGTGTTCTTTCATCTGCTATGCGCCAGATCTTGAGTCACGAGGTTGAGAAGCAGAAAATATTGCGTGAAAGCATTTCTAGAACTTCTCGTGCAAATGAAGTATCTATCTTGCCAAAAGAGGCATCTATCATGGAAGAAGTCAAAGCACATGTAAG
CAAAGGCAGTCTCGCAGCTGAAAGTACATCAAACCTTCTGTCCACTCAAATCAAAATGAAAAACTCTGTACCTTCATTAATAAACCCTTTGAAGTTCAGTAGTTCAAACAATGCCGATCTCGGAAGCAATGCCACTGCACCTACAGTTGATTCCAAGTTTAAACTGGCTGCAGCCGTGAAGAAGCCTAGTGGCAGTTTCA
ATTTCTTTGACAGATTCAGGAAATCTTCTCAGAATGAATCTGGAAACAATGAAAAATCTCCCGTTCTTTCGTTAACATCACGGAGAGATTTACGGCCTCTAGTTTTTAAATTTAATGAGGGATTTACCAATGCAGTAAAAAGGCCTGTGCGTGTACGTGATCTGCTTTAAATATGGCGGTGAAGTTGATGCAGACGTCAC
TGTCAATGTTTCAAGTCAATTCAGTACAAAAGGGAAGGGAAGGATGTAAAGTGCCTGCTTGCCTTGTGGGTAAAGTATACCGCATGAATCAATCTCTCAATTGGCAGAACGAAGTCCTTCCCCATCATCCATTGGGATGACGGGTTGACAGCCATGTTATTTGATTAGGATTGAGGGTCAACAGGATAATCAATAATGAA
ACAGCATCTGAAATTAGTGGTGGCTCACCATATAGTCATCGCATATCATCATAAATTTCCTTTTCCATTAATTCAAGGAGTTGCTTAATTAACATCTGGTTAATTGGTTCCTCTTTTTCAGTGCCTTGGCAGATGCATTTTGGTATTCATATGAGTTGCATCGCTTTTCATCTATCCAAATATGTGATTTTTTTATTAAT
TTGTTGTCCCTGAATCTGAAAAATATGCATGCTTTGGTGCATACAATATGGAATATACTTTAATTTTCTATTGTAGTGTTGAGTCTGAATCTAGAAATATGCATGCTTTGGTGTATACAGTATTGAATCTAATGCCTGATCCCAGGGTTTAATATCATTATTTTCCGGAATTTTGCCCAGTGGATCTAGGGGCGATATCA
TTTTGGAAGGCACTGGCTATAGTAATATTTACCCGTCTTACTTCATCCAATTATTCTC
Intron 3 GTGATTCTCT ... ATGAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.46 | 71 | 3 | 12 |
| A2 | 26.47 | 25 | 2 | 9 |
| A3 | 23.08 | 30 | 2 | 9 |
| A4 | 9.3 | 39 | 2 | 4 |
| A5 | 16.67 | 10 | 0 | 2 |
| A6 | 10.81 | 33 | 0 | 4 |
| A7 | 22.73 | 51 | 2 | 15 |
| A8 | 29.41 | 48 | 2 | 20 |
| A9 | 21.05 | 60 | 2 | 16 |
| A10 | 12 | 44 | 4 | 6 |
>TRINITY_DN120405_c2_g1_i2 from sample A3 / Example spliced isoformGGTACCAACACTGGAAAAATACAGAGAAGGAAAGCAGCTCCCGGCCCTGCTCGGCAGAAATGGAGATGGAGATGCCAGATGTAGATGAGCTTGAATGGTTGGCTCAGCAACAACAGCATTACAATTCAGATGACAATGAAGACGACCATCTTGATCCTGTTCCTCTTTCTCCGTCTCCAAGTCCATCAAAATTCAAATCC
AGTTCTTCAACTCAGCAGCAGCAGCCGGAGGACAAGGGGTGTCGGAAGAGGCTCTACCCGGACGTTGATGGTGAGGATGACGATCAAGTCGCCGAGAAGCGGAACAGGACCGATGAAATGCTATTCGTTGAGGATGAATGGCTGCAGGATCCACCGGACCATTTTCCGGTCCCAAACCAAATTGAGAAAGAGAAGGAGAG
GGAGAATGAGTGGATTCCTCGCAGAATGGCGGGTGATATTGAAGGCGATTTTATTTCTATCACAGGGCCCTCTGGCGACCGGGTTTATGCCAAACTCAATGGAATGGTCCCCCTTTCCACCACCTCCACCACCACTAGGATTGTAAATGGCAATGGACAAGGACTTCTTTCTGAACCAATTCATGCTTTACTTGAAAAAG
TTGAAGAAGAAATGTTTCATCAGGCTTGCCATGCTACGACAGAAGGTACGAGTGATGAAAACTATGTCTGCAGCCAAACAACAAGTGAGCAGCTGTGGGTGGAAAAATATGCTCCAAAGTCATTTACTGAACTCTTGAGTGATGAGCAGACAAATAGAGAGGTCTTACGCTGGCTGAAGCAATGGGATCCTTGTGTATTT
GGATCTAAAAACACAAGGACCTCTAGTGAGGTCCTGTCTGCATTAAAAATACATTCTTCTATTTCGCAAAGCCATGGATTCGTCGGCAATAAGAACTTTTCATTTAAGGGAAACAGGGGAGTTCCACCAAGCGAGATAAATGATGGGAAAGATAAATGGAATAACTCAAATCATCCAAATGATTATTCTACAAAAACTTC
AGATCAATTAAAGAAGGAGACCTGTGATGACCGCCCTGATGAAAAGATACTTTTACTCTGTGGTCCTCCAGGTTTGGGAAAGACTACCCTTGCTCATGTTGCTGCTAAACATTGTGGTTATCGTGTTGTGGAGATAAATGCAAGCGATGACCGGTCTGCATCTACAATAGAGGGGAAAATTCTTGATGTGGTGCAAATGA
ACTCCGTCATGGCTGATTCTAAGCCAAAGTGTTTAGTGATTGATGAAATTGATGGAGCCCTTGGTGAGGGAAAGGGCGCTGTTGAAGTTTTGTTAAAGATGATTTCCTCGGAAAAGAAGCCAACTTTAGACAAGGAAAATGATGAAAGTATTACACAATCTGTAAAGGCTACCAAGAAGAAAGGCCCAAAGAAAACTGGC
AGACTGTCAAGACCGGTGATTTGCATATGTAACGATATGTTTGCACCTGCTTTGCGGTCATTACGGGAAGTGGCCAGGGTGCATACCTTTGTCCAACCGAGTCCTAGCCGGGTAGTAAGCAGGCTTAAATATATCTGCAAGAAGGAAGGATTTAAGGCAAGTGCGCAAGGGCTTACTACACTGGCTGAATTTACTGAATG
TGATATACGAGCTTGTCTTAATACTCTTCAGTTTCTTAACAGAAAGAAAGAATTTCTAAATATGGTAGATATTGGTTCTCAGGTGGTTGGTCGAAAAGATATGACCAGCAGCATCTTTGATATTTGGAGGGCGGTTCTGCAAAAGCGTAAGTCCAAAGTCAAAGGACCTGCATTAGACAGTTGCAAGCAAGAAGGGCAAA
ATTTTGCACAACTTCATAACATTATTTCACACCATGGGGATTATGAATTGGGGGTTGAAGGAATTCATGAAAATTTTCTACATCTGAGGTACCATGATTCAGCGATGGAGAAGACTGTCAAGTGTCTTGATTTTCTTTGTGACTCCAATTTGCTTAGTCAGCGTACTATGCGATCTCAGCAATTCTTTCTTTATGCATAT
CAACCTTCAATTATCATTTCTATCCAACGTCTAATAGCCCAAATAGAAAAGCCATATATTGAATGGCCAAAATCACATCAAAGGTACAGGGCAACCCTCACTGTAAAGAAAGATTTATTGAAATCATGGATGAACAGAATTTCACCAACTGTTTCAAGATATCTTTCGCTTGATTCGATTGTGGTGGACGTTGTTTCTTC
GTTGCTGTACATCTTATCACCTCCAGCTATGAGGCCTGTAAGGAATTGAGTACATTACCATATGCTTATTTGTTCTGTCTTCTTGATTACGTAAAATAGATTCAATAGCTCCAGAAATGTGTATAAGAAAAGGAATAAGGAATTGAAACGACCTTCTAGGAGGAGGCTATCTTGGCTGCAAGGAATACTGATTTGCAGGG
GTAGCTTGCTGATTTTGTTGATTTCATTCAATCCAGATCATTTTATTGCTCAAATCTTGCAATAACTCCATGAACTTGGCAGGAACTTTGCCCTCGTTGCTTTCTTACTTCTTGGGCGCAGCTAGTGACAGAGAGGATAAGTTCAGACGAACCTTCTTAGCTGCATTCATATCTTTTCAAGCTTGAGGCAGAAACATAGG
CAGCCTCCAGGTTCCATGGATCATTTTCCTTGAACAAAAGGATGAAAGATTCATCAAAAGCATTGGTATAAAAACACCAAAGTAGTACCATCACTTGGGCTTAGAGCTTGTAGGATACTTGCATGTAATTTGGCAAGGTAGCTGGTGAACTCTGTTACCGGGCAAACTAGCAGACATAGTGCTCAGTAAGTGCATGCACA
GATTTGTGACCCATTGTCACCTCGATCACAAATCTAAAATCTTTAACCTCTTCAGAGAGTCTTGACCTCCAAGGCGGGAGCCCTTATAGAACACCCGCAG
>TRINITY_DN120405_c2_g1_i10 from sample A3 / Example unspliced isoform:ATCTCAGCAATTCTTTCTTTATGGTACTCTCTTGATCCCAGCGTTCAGTACATTTCTTTGAGTTGCAATTGGAATAAACTTGCTCAGCAGTCTTGTAACATATACTTTTGGGCTTAATGGCTACGCTAGGATCTATGGTTATGTTAACATTTACCTACTTCAATCTGACAATGTGACTCACATGTATTTCTTGTGTTTAG
CATATCAACCTTCAATTATCATTTCTATCCAACGTCTAATAGCCCAAATAGAAAAGCCATATATTGAATGGCCAAAATCACATCAAAGgtgattctctgcttgtcttttttttctgaagattgtatttttttttgtacattatatggttattctttgttcttttgcaacttgttacagtcaaagttgtgtatgaattcag
GTACAGGGCAACCCTCACTGTAAAGAAAGATTTATTGAAATCATGGATGAACAGAATTTCACCAACTGTTTCAAGATATCTTTCGCTTGATTCGATTGTGGTGGACGTTGTTTCTTCGTTGCTGTACATCTTATCACCTCCAGCTATGAGGCCTGTGGCATCACAACTGTTATCAGAAAAGGAACATGGAGAAATAATTG
AACTAGTAAACACAATGATCGATTACGCAGTCATTTACAAGAAAGGGAAAGTCCCGACTCCAAATGGGACTCAGATGCAGCATTCAACTTTAGATTCTGTTGGACTTTGCTTTGACCCACCAATCCATGATTTTGTCAATTTCCAGGATTATACTGTGAGGCATTGTGTTCTTTCATCTGCTATGCGCCAGATCTTGAGT
CACGAGGT
Intron 4 GTACTCTCTT ... TTGTGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.16 | 92 | 2 | 3 |
| A2 | 5.77 | 49 | 0 | 3 |
| A3 | 1.61 | 61 | 2 | 1 |
| A4 | 4.55 | 42 | 0 | 2 |
| A5 | 0 | 26 | 0 | 0 |
| A6 | 0 | 45 | 0 | 0 |
| A7 | 2.11 | 93 | 0 | 2 |
| A8 | 6.52 | 43 | 0 | 3 |
| A9 | 2.15 | 91 | 0 | 2 |
| A10 | 2 | 98 | 0 | 2 |
>TRINITY_DN120405_c2_g1_i2 from sample A3 / Example spliced isoformGGTACCAACACTGGAAAAATACAGAGAAGGAAAGCAGCTCCCGGCCCTGCTCGGCAGAAATGGAGATGGAGATGCCAGATGTAGATGAGCTTGAATGGTTGGCTCAGCAACAACAGCATTACAATTCAGATGACAATGAAGACGACCATCTTGATCCTGTTCCTCTTTCTCCGTCTCCAAGTCCATCAAAATTCAAATCC
AGTTCTTCAACTCAGCAGCAGCAGCCGGAGGACAAGGGGTGTCGGAAGAGGCTCTACCCGGACGTTGATGGTGAGGATGACGATCAAGTCGCCGAGAAGCGGAACAGGACCGATGAAATGCTATTCGTTGAGGATGAATGGCTGCAGGATCCACCGGACCATTTTCCGGTCCCAAACCAAATTGAGAAAGAGAAGGAGAG
GGAGAATGAGTGGATTCCTCGCAGAATGGCGGGTGATATTGAAGGCGATTTTATTTCTATCACAGGGCCCTCTGGCGACCGGGTTTATGCCAAACTCAATGGAATGGTCCCCCTTTCCACCACCTCCACCACCACTAGGATTGTAAATGGCAATGGACAAGGACTTCTTTCTGAACCAATTCATGCTTTACTTGAAAAAG
TTGAAGAAGAAATGTTTCATCAGGCTTGCCATGCTACGACAGAAGGTACGAGTGATGAAAACTATGTCTGCAGCCAAACAACAAGTGAGCAGCTGTGGGTGGAAAAATATGCTCCAAAGTCATTTACTGAACTCTTGAGTGATGAGCAGACAAATAGAGAGGTCTTACGCTGGCTGAAGCAATGGGATCCTTGTGTATTT
GGATCTAAAAACACAAGGACCTCTAGTGAGGTCCTGTCTGCATTAAAAATACATTCTTCTATTTCGCAAAGCCATGGATTCGTCGGCAATAAGAACTTTTCATTTAAGGGAAACAGGGGAGTTCCACCAAGCGAGATAAATGATGGGAAAGATAAATGGAATAACTCAAATCATCCAAATGATTATTCTACAAAAACTTC
AGATCAATTAAAGAAGGAGACCTGTGATGACCGCCCTGATGAAAAGATACTTTTACTCTGTGGTCCTCCAGGTTTGGGAAAGACTACCCTTGCTCATGTTGCTGCTAAACATTGTGGTTATCGTGTTGTGGAGATAAATGCAAGCGATGACCGGTCTGCATCTACAATAGAGGGGAAAATTCTTGATGTGGTGCAAATGA
ACTCCGTCATGGCTGATTCTAAGCCAAAGTGTTTAGTGATTGATGAAATTGATGGAGCCCTTGGTGAGGGAAAGGGCGCTGTTGAAGTTTTGTTAAAGATGATTTCCTCGGAAAAGAAGCCAACTTTAGACAAGGAAAATGATGAAAGTATTACACAATCTGTAAAGGCTACCAAGAAGAAAGGCCCAAAGAAAACTGGC
AGACTGTCAAGACCGGTGATTTGCATATGTAACGATATGTTTGCACCTGCTTTGCGGTCATTACGGGAAGTGGCCAGGGTGCATACCTTTGTCCAACCGAGTCCTAGCCGGGTAGTAAGCAGGCTTAAATATATCTGCAAGAAGGAAGGATTTAAGGCAAGTGCGCAAGGGCTTACTACACTGGCTGAATTTACTGAATG
TGATATACGAGCTTGTCTTAATACTCTTCAGTTTCTTAACAGAAAGAAAGAATTTCTAAATATGGTAGATATTGGTTCTCAGGTGGTTGGTCGAAAAGATATGACCAGCAGCATCTTTGATATTTGGAGGGCGGTTCTGCAAAAGCGTAAGTCCAAAGTCAAAGGACCTGCATTAGACAGTTGCAAGCAAGAAGGGCAAA
ATTTTGCACAACTTCATAACATTATTTCACACCATGGGGATTATGAATTGGGGGTTGAAGGAATTCATGAAAATTTTCTACATCTGAGGTACCATGATTCAGCGATGGAGAAGACTGTCAAGTGTCTTGATTTTCTTTGTGACTCCAATTTGCTTAGTCAGCGTACTATGCGATCTCAGCAATTCTTTCTTTATGCATAT
CAACCTTCAATTATCATTTCTATCCAACGTCTAATAGCCCAAATAGAAAAGCCATATATTGAATGGCCAAAATCACATCAAAGGTACAGGGCAACCCTCACTGTAAAGAAAGATTTATTGAAATCATGGATGAACAGAATTTCACCAACTGTTTCAAGATATCTTTCGCTTGATTCGATTGTGGTGGACGTTGTTTCTTC
GTTGCTGTACATCTTATCACCTCCAGCTATGAGGCCTGTAAGGAATTGAGTACATTACCATATGCTTATTTGTTCTGTCTTCTTGATTACGTAAAATAGATTCAATAGCTCCAGAAATGTGTATAAGAAAAGGAATAAGGAATTGAAACGACCTTCTAGGAGGAGGCTATCTTGGCTGCAAGGAATACTGATTTGCAGGG
GTAGCTTGCTGATTTTGTTGATTTCATTCAATCCAGATCATTTTATTGCTCAAATCTTGCAATAACTCCATGAACTTGGCAGGAACTTTGCCCTCGTTGCTTTCTTACTTCTTGGGCGCAGCTAGTGACAGAGAGGATAAGTTCAGACGAACCTTCTTAGCTGCATTCATATCTTTTCAAGCTTGAGGCAGAAACATAGG
CAGCCTCCAGGTTCCATGGATCATTTTCCTTGAACAAAAGGATGAAAGATTCATCAAAAGCATTGGTATAAAAACACCAAAGTAGTACCATCACTTGGGCTTAGAGCTTGTAGGATACTTGCATGTAATTTGGCAAGGTAGCTGGTGAACTCTGTTACCGGGCAAACTAGCAGACATAGTGCTCAGTAAGTGCATGCACA
GATTTGTGACCCATTGTCACCTCGATCACAAATCTAAAATCTTTAACCTCTTCAGAGAGTCTTGACCTCCAAGGCGGGAGCCCTTATAGAACACCCGCAG
>TRINITY_DN120405_c2_g1_i10 from sample A3 / Example unspliced isoform:ATCTCAGCAATTCTTTCTTTATGgtactctcttgatcccagcgttcagtacatttctttgagttgcaattggaataaacttgctcagcagtcttgtaacatatacttttgggcttaatggctacgctaggatctatggttatgttaacatttacctacttcaatctgacaatgtgactcacatgtatttcttgtgtttag
CATATCAACCTTCAATTATCATTTCTATCCAACGTCTAATAGCCCAAATAGAAAAGCCATATATTGAATGGCCAAAATCACATCAAAGGTGATTCTCTGCTTGTCTTTTTTTTCTGAAGATTGTATTTTTTTTTGTACATTATATGGTTATTCTTTGTTCTTTTGCAACTTGTTACAGTCAAAGTTGTGTATGAATTCAG
GTACAGGGCAACCCTCACTGTAAAGAAAGATTTATTGAAATCATGGATGAACAGAATTTCACCAACTGTTTCAAGATATCTTTCGCTTGATTCGATTGTGGTGGACGTTGTTTCTTCGTTGCTGTACATCTTATCACCTCCAGCTATGAGGCCTGTGGCATCACAACTGTTATCAGAAAAGGAACATGGAGAAATAATTG
AACTAGTAAACACAATGATCGATTACGCAGTCATTTACAAGAAAGGGAAAGTCCCGACTCCAAATGGGACTCAGATGCAGCATTCAACTTTAGATTCTGTTGGACTTTGCTTTGACCCACCAATCCATGATTTTGTCAATTTCCAGGATTATACTGTGAGGCATTGTGTTCTTTCATCTGCTATGCGCCAGATCTTGAGT
CACGAGGT
Intron 5 GTGATTCTCT ... ATGAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.46 | 71 | 3 | 12 |
| A2 | 26.47 | 25 | 2 | 9 |
| A3 | 23.08 | 30 | 2 | 9 |
| A4 | 9.3 | 39 | 2 | 4 |
| A5 | 16.67 | 10 | 0 | 2 |
| A6 | 10.81 | 33 | 0 | 4 |
| A7 | 22.73 | 51 | 2 | 15 |
| A8 | 29.41 | 48 | 2 | 20 |
| A9 | 21.34 | 59 | 2 | 16 |
| A10 | 12 | 44 | 4 | 6 |
>TRINITY_DN118219_c0_g1_i4 from sample A2 / Example spliced isoformGTTTTGTGTGAATAGGTACCCACACTGGAAAAATACAGAGAAGGAAAGCAGCTCCCGGCCCTGCTCGGCAGAAATGGAGATGGAGATGCCAGATGTAGATGAGCTTGAATGGTTGGCTCAGCAACAACAGCATTACAATTCAGATGACAATGAAGACGACCATCTTGATCCTGTTCCTCTTTCTCCGTCTCCAAGTCCAT
CAAAATTCAAATCCAGTTCTTCAACTCAGCAGCAGCAGCCGGAGGACAAGGGGTGTCGGAAGAGGCTCTACCCGGACGTTGATGGTGAGGATGACGATCAAGTCGCCGAGAAGCGGAACAGGACCGATGAAATGCTATTCGTTGAGGATGAATGGCTGCAGGATCCACCGGACCATTTTCCGGTCCCAAACCAAATTGAG
AAAGAGAAGGAGAGGGAGAATGAGTGGATTCCTCGCAGAATGGCGGGTGATATTGAAGGCGATTTTATTTCTATCACAGGGCCCTCTGGCGACCGGGTTTATGCCAAACTCAATGGAATGGTCCCCCTTTCCACCACCTCCACCACCACTAGGATTGTAAATGGCAATGGACAAGGACTTCTTTCTGAACCAATTCATGC
TTTACTTGAAAAAGTTGAAGAAGAAATGTTTCATCAGGCTTGCCATGCTACGACAGAAGGTACGAGTGATGAAAACTATGTCTGCAGCCAAACAACAAGTGAGCAGCTGTGGGTGGAAAAATATGCTCCAAAGTCATTTACTGAACTCTTGAGTGATGAGCAGACAAATAGAGAGGTCTTACGCTGGCTGAAGCAATGGG
ATCCTTGTGTATTTGGATCTAAAAACACAAGGACCTCTAGTGAGGTCCTGTCTGCATTAAAAATACATTCTTCTATTTCGCAAAGCCATGGATTCGTCGGCAATAAGAACTTTTCATTTAAGGGAAACAGGGGAGTTCCACCAAGCGAGATAAATGATGGGAAAGATAAATGGAATAACTCAAATCATCCAAATGATTAT
TCTACAAAAACTTCAGATCAATTAAAGAAGGAGACCTGTGATGACCGCCCTGATGAAAAGATACTTTTACTCTGTGGTCCTCCAGGTTTGGGAAAGACTACCCTTGCTCATGTTGCTGCTAAACATTGTGGTTATCGTGTTGTGGAGATAAATGCAAGCGATGACCGGTCTGCATCTACAATAGAGGGGAAAATTCTTGA
TGTGGTGCAAATGAACTCCGTCATGGCTGATTCTAAGCCAAAGTGTTTAGTGATTGATGAAATTGATGGAGCCCTTGGTGAGGGAAAGGGCGCTGTTGAAGTTTTGTTAAAGATGATTTCCTCGGAAAAGAAGCCAACTTTAGACAAGGAAAATGATGAAAGTATTACACAATCTGTAAAGGCTACCAAGAAGAAAGGCC
CAAAGAAAACTGGCAGACTGTCAAGACCGGTGATTTGCATATGTAACGATATGTTTGCACCTGCTTTGCGGTCATTACGGGAAGTGGCCAGGGTGCATACCTTTGTCCAACCGAGTCCTAGCCGGGTAGTAAGCAGGCTTAAATATATCTGCAAGAAGGAAGGATTTAAGGCAAGTGCGCAAGGGCTTACTACACTGGCT
GAATTTACTGAATGTGATATACGAGCTTGTCTTAATACTCTTCAGTTTCTTAACAGAAAGAAAGAATTTCTAAATATGGTAGATATTGGTTCTCAGGTGGTTGGTCGAAAAGATATGACCAGCAGCATCTTTGATATTTGGAGGGCGGTTCTGCAAAAGCGTAAGTCCAAAGTCAAAGGACCTGCATTAGACAGTTGCAA
GCAAGAAGGGCAAAATTTTGCACAACTTCATAACATTATTTCACACCATGGGGATTATGAATTGGGGGTTGAAGGAATTCATGAAAATTTTCTACATCTGAGGTCAAGTGTCTTGATTTTCTTTGTGACTCCAATTTGCTTAGTCAGCGTACTATGCGATCTCAGCAATTCTTTCTTTATGCATATCAACCTTCAATTAT
CATTTCTATCCAACGTCTAATAGCCCAAATAGAAAAGCCATATATTGAATGGCCAAAATCACATCAAAGGTACAGGGCAACCCTCACTGTAAAGAAAGATTTATTGAAATCATGGATGAACAGAATTTCACCAACTGTTTCAAGATATCTTTCGCTTGATTCGATTGTGGTGGACGTTGTTTCTTCGTTGCTGTACATCT
TATCACCTCCAGCTTTGAGGCCTGTGGCATCACAACTGTTATCAGAAAAGGAACATGGAGAAATAACTGAACTAGTAAACACAATGATCGATTACGCAGTCATTTACAAGAAAGGGAAAGTCCCGACTCCAAATGAGACTCAGATGCAGCATTCAACTTTAGATTCTGTTGGACTTTGCTTTGACCCACCAATCCATGAT
TTTGTCAATTTCCAGGATTATACTGTGAGGCATTGTGTTCTTTCATCTGCTATGCGCCAGATCTTGAGTCACGAGGTTGAGAAGCAGAAAATATTGCGTGAAAGCATTTCTAGAACTTCTCGTGCAAATGAAGTATCTATCTTGCCAAAAGAGGCATCTATCATGGAAGAAGTCAAAGCACATGTAAGCAAAGGCAGTCT
CGCAGCTGAAAGTACATCAAACCTTCTGTCCACTCAAATCAAAATGAAAAACTCTGTACCTTCATTAATAAACCCTTTGAAGTTCAGTAGTTCAAACAATGCCGATCTCGGAAGCAATGCCACTGCACCTACAGTTGATTCCAAGTTTAAACTGGCTGCAGCCGTGAAGAAGCCTAGTGGCAGTTTCAATTTCTTTGACA
GATTCAGGAAATCTTCTCAGAATGAATCTGGAAACAATGAAAAATCTCCCGTTCTTTCGTTAACATCACGGAGAGATTTACGGCCTCTAGTTTTTAAATTTAATGAGGGATTTACCAATGCAGTAAAAAGGCCTGTGCGTGTACGTGATCTGCTTTAAATATGGCGGTGAAGTTGATGCAGACGTCACTGTCAATGTTTC
AAGTCAATTCAGTACAAAAGGGAAGGGAAGGATGTAAAGTGCCTGCTTGCCTTGTGGGTAAAGTATACCGCATGAATCAATCTCTCAATTGGCAGAACGAAGTCCTTCCCCATCATCCATTGGGATGACGGGTTGACAGCCATGTTATTTGATTAGGATTGAGGGTCAACAGGATAATCAATAATGAAACAGCATCTGAA
ATTAGTGGTGGCTCACCATATAGTCATCGCATATCATCATAAATTTCCTTTTCCATTAATTCACGGAGTTGCTTAATTAACATCTGGTTAATTGGTTCCTCTTTTTCAGTGCCTTGGCAGATGCATTTTGGTATTCATATGAGTTGCATCGCTTTTCATCTATCCAAATATGTGATTTTTTTATTAATTTGTTGTCCCTG
AATCTGAAAAATATGCATGCTTTGGTGCATACAATATGGAATATACTTTAATTTTCTATTGTAGTGTTGAGTCTGAATCTAGAAATATGCATGCTTTGGTGTATACAGTATTGAATCTAATGCCTGATCCCAGGGTTTAATATCATTAT
>TRINITY_DN118219_c0_g1_i1 from sample A2 / Example unspliced isoform:GCTACGCTAGGATCTATGGTTATGTTAACATTTACCTACTTCAATCTGACAATGTGACTCACATGTATTTCTTGTGTTTAGCATATCAACCTTCAATTATCATTTCTATCCAACGTCTAATAGCCCAAATAGAAAAGCCATATATTGAATGGCCAAAATCACATCAAAGgtgattctctgcttgtcttttttctgaagat
tgtatttttttttgtacattatatggttattctttgttcttttgcaacttgttacagtcaaagttgtgtatgaattcagGTACAGGGCAACCCTCACTGTAAAGAAAGATTTATTGAAATCATGGATGAACAGAATTTCACCAACTGTTTCAAGATATCTTTCGCTTGATTCGATTGTGGTGGACGTTGTTTCTTCGTTG
CTGTACATCTTATCACCTCCAGCTTTGAGGCCTGTGGCATCACAACTGTTATCAGAAAAGGAACATGGAGAAATAACTGAACTAGTAAACACAATGATCGATTACGCAGTCATTTACAAGAAAGGGAAAGTCCCGACTCCAAATGAGACTCAGATGCAGCATTCAACTTTAGATTCTGTTGGACTTTGCTTTGACCCACC
AATCCATGATTTTGTCAATTTCCAGGATTATACTGTGAGGCATTGTGTTCTTTCATCTGCTATGCGCCAGATCTTGAGTCACGAGGTTGAGAAGCAGAAAATATTGCGTGAAAGCATTTCTAGAACTTCTCGTGCAAATGAAGTATCTATCTTGCCAAAAGAGGCATCTATCATGGAAGAAGTCAAAGCACATGTAAGCA
AAGGCAGTCTCGCAGCTGAAAGTACATCAAACCTTCTGTCCACTCAAATCAAAATGAAAAACTCTGTACCTTCATTAATAAACCCTTTGAAGTTCAGTAGTTCAAACAATGCCGATCTCGGAAGCAATGCCACTGCACCTACAGTTGATTCCAAGTTTAAACTGGCTGCAGCCGTGAAGAAGCCTAGTGGCAGTTTCAAT
TTCTTTGACAGATTCAGGAAATCTTCTCAGAATGAATCTGGAAACAATGAAAAATCTCCCGTTCTTTCGTTAACATCACGGAGAGATTTACGGCCTCTAGTTTTTAAATTTAATGAGGGATTTACCAATGCAGTAAAAAGGCCTGTGCGTGTACGTGATCTGCTTTAAATATGGCGGTGAAGTTGATGCAGACGTCACTG
TCAATGTTTCAAGTCAATTCAGTACAAAAGGGAAGGGAAGGATGTAAAGTGCCTGCTTGCCTTGTGGGTAAAGTATACCGCATGAATCAATCTCTCAATTGGCAGAACGAAGTCCTTCCCCATCATCCATTGGGATGACGGGTTGACAGCCATGTTATTTGATTAGGATTGAGGGTCAACAGGATAATCAATAATGAAAC
AGCATCTGAAATTAGTGGTGGCTCACCATATAGTCATCGCATATCATCATAAATTTCCTTTTCCATTAATTCACGGAGTTGCTTAATTAACATCTGGTTAATTGGTTCCTCTTTTTCAGTGCCTTGGCAGATGCATTTTGGTATTCATATGAGTTGCATCGCTTTTCATCTATCCAAATATGTGATTTTTTTATTAATTT
GTTGTCCCTGAATCTGAAAAATATGCATGCTTTGGTGCATACAATATGGAATATACTTTAATTTTCTATTGTAGTGTTGAGTCTGAATCTAGAAATATGCATGCTTTGGTGTATACAGTATTGAATCTAATGCCTGATCCCAGGGTTTAATATCATTAT